Query psy9061
Match_columns 99
No_of_seqs 123 out of 1235
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 17:56:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k6j_A Protein F01G10.3, confi 99.9 2.4E-25 8.1E-30 175.8 8.1 93 4-96 308-406 (460)
2 3zwc_A Peroxisomal bifunctiona 99.9 5E-24 1.7E-28 175.8 8.2 93 4-96 587-686 (742)
3 1zcj_A Peroxisomal bifunctiona 99.9 3.1E-23 1E-27 162.7 8.0 92 4-96 308-407 (463)
4 3mog_A Probable 3-hydroxybutyr 99.9 1.1E-22 3.9E-27 160.8 6.4 49 47-96 385-433 (483)
5 1wdk_A Fatty oxidation complex 99.9 2.9E-22 1E-26 164.3 7.3 92 4-96 578-675 (715)
6 2wtb_A MFP2, fatty acid multif 99.8 9.6E-22 3.3E-26 161.5 3.1 93 3-96 573-675 (725)
7 3ctv_A HBD-10, 3-hydroxyacyl-C 99.6 1.8E-16 6E-21 103.3 2.5 49 47-96 15-63 (110)
8 3ado_A Lambda-crystallin; L-gu 99.0 3E-11 1E-15 91.4 1.3 49 47-96 190-241 (319)
9 4e12_A Diketoreductase; oxidor 98.9 6.7E-10 2.3E-14 81.3 3.6 49 47-96 188-236 (283)
10 1f0y_A HCDH, L-3-hydroxyacyl-C 98.9 1.4E-09 4.7E-14 80.0 3.8 47 48-95 203-249 (302)
11 3mog_A Probable 3-hydroxybutyr 98.8 2.6E-09 8.8E-14 84.4 3.2 48 48-96 187-234 (483)
12 3k6j_A Protein F01G10.3, confi 98.7 1E-08 3.4E-13 81.0 3.8 47 47-96 232-279 (460)
13 2dpo_A L-gulonate 3-dehydrogen 98.6 1.1E-08 3.9E-13 76.8 1.6 49 47-96 190-241 (319)
14 3zwc_A Peroxisomal bifunctiona 98.5 5.7E-08 1.9E-12 80.4 3.1 47 47-96 495-541 (742)
15 1zej_A HBD-9, 3-hydroxyacyl-CO 98.4 4E-08 1.4E-12 73.3 1.3 45 50-96 174-221 (293)
16 2wtb_A MFP2, fatty acid multif 98.4 1.2E-07 4.2E-12 77.9 3.3 46 48-96 494-539 (725)
17 1wdk_A Fatty oxidation complex 98.4 1.8E-07 6.2E-12 76.8 3.3 46 48-96 496-541 (715)
18 1zcj_A Peroxisomal bifunctiona 98.3 4E-07 1.4E-11 71.2 3.4 45 48-95 217-261 (463)
19 1zej_A HBD-9, 3-hydroxyacyl-CO 97.5 2.1E-05 7.3E-10 58.5 1.0 17 4-20 257-273 (293)
20 1ybx_A Conserved hypothetical 59.4 5 0.00017 26.9 2.0 43 47-93 101-143 (143)
21 3dfu_A Uncharacterized protein 57.9 4.7 0.00016 28.7 1.8 28 51-79 144-176 (232)
22 2ewd_A Lactate dehydrogenase,; 57.7 0.13 4.4E-06 37.7 -6.6 43 50-96 172-224 (317)
23 2h78_A Hibadh, 3-hydroxyisobut 48.6 22 0.00075 25.0 4.1 36 52-88 175-214 (302)
24 2f69_A Histone-lysine N-methyl 44.7 9 0.00031 27.6 1.6 15 8-22 8-22 (261)
25 1taf_B TFIID TBP associated fa 42.2 42 0.0014 19.5 4.0 31 52-83 36-69 (70)
26 1g2r_A Hypothetical cytosolic 35.1 14 0.00049 22.9 1.2 15 6-20 41-55 (100)
27 3op0_A Signal transduction pro 34.7 6.4 0.00022 29.7 -0.6 19 13-34 297-315 (323)
28 3d1l_A Putative NADP oxidoredu 28.4 60 0.002 22.1 3.7 41 51-94 180-231 (266)
29 3iz5_s 60S acidic ribosomal pr 25.1 1.2E+02 0.0039 22.5 4.8 40 45-85 208-247 (319)
30 3a1y_G Acidic ribosomal protei 22.5 1.7E+02 0.0058 21.0 5.2 40 45-85 207-246 (284)
31 1xrx_A SEQA protein; protein f 22.0 1E+02 0.0034 16.8 3.0 30 26-57 5-34 (50)
No 1
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=99.92 E-value=2.4e-25 Score=175.79 Aligned_cols=93 Identities=22% Similarity=0.275 Sum_probs=80.1
Q ss_pred CCCCccccCceeEeccCCCCCCCCCHHHHHHHHhhcc---CCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHH
Q psy9061 4 WCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSL---QPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVY 80 (99)
Q Consensus 4 ~grlGrKtG~GfY~Y~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~ 80 (99)
+|++|||||+|||+|+++++++.+|+++..++...+. .....+++++|++||+++|+|||++||+|||+.+++|||+
T Consensus 308 ~G~lG~KtG~GFY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~ 387 (460)
T 3k6j_A 308 LKRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKSNIQIINDQDVINFMLYPTVNEGYRCIEEGVISNESLIDI 387 (460)
T ss_dssp TTCCBGGGTBSSSEECTTTCCEECCHHHHHHHHHC---CCCSSCCCSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred CCCCeeecCCEEEECCCCCCCCCCCHHHHHHHHHHHHhcCCCcccCChHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhH
Confidence 6999999999999998765556789999998865431 1123578999999999999999999999999999999999
Q ss_pred HHHhhcCCCC---cccccc
Q psy9061 81 DHHLDGNLEP---GHSRHV 96 (99)
Q Consensus 81 ~~~~g~G~p~---gp~~~~ 96 (99)
+|++|+|||+ |||+..
T Consensus 388 ~~~~G~GfP~~~GGp~~~~ 406 (460)
T 3k6j_A 388 MFILGFGWPIHSGGPMRFG 406 (460)
T ss_dssp HHHHTCCCSEETTEECBCS
T ss_pred HHHhcCCCCccccCHHHHH
Confidence 9999999999 999864
No 2
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=99.90 E-value=5e-24 Score=175.80 Aligned_cols=93 Identities=22% Similarity=0.217 Sum_probs=80.0
Q ss_pred CCCCccccCceeEeccCCC-CCCCCCHHHHHHHHhhc---cCCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHH
Q psy9061 4 WCPPGRKSGKGYFVYAKGS-KARPVNDGALAILKKYS---LQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPV 79 (99)
Q Consensus 4 ~grlGrKtG~GfY~Y~~g~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD 79 (99)
+|++|||||+|||+|++++ +.+.+|+++..++...+ ......+++++|++||+++|+|||++||+|||+.++.|||
T Consensus 587 ~G~lG~KtG~GFY~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~R~l~~~~nEa~~~l~egI~~~~~diD 666 (742)
T 3zwc_A 587 AGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEAFRILEEGMAARPEHID 666 (742)
T ss_dssp TTCCBGGGTBSSSEESSTTCSCEECCHHHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred CCCccccCCCeeEECCCCCCccCCCChHHHHHHHHHhhhcCCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCHHHHH
Confidence 6999999999999998653 34568999888876543 1233568999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC---cccccc
Q psy9061 80 YDHHLDGNLEP---GHSRHV 96 (99)
Q Consensus 80 ~~~~~g~G~p~---gp~~~~ 96 (99)
++|++|+|||+ |||+..
T Consensus 667 ~a~~~G~Gfp~~~GGp~~~~ 686 (742)
T 3zwc_A 667 VIYLHGYGWPRHKGGPMFYA 686 (742)
T ss_dssp HHHHHHSCCCGGGCCHHHHH
T ss_pred HHHHhCcCCCCCcCCHHHHH
Confidence 99999999999 999854
No 3
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=99.88 E-value=3.1e-23 Score=162.67 Aligned_cols=92 Identities=21% Similarity=0.239 Sum_probs=75.3
Q ss_pred CCCCccccCceeEeccC-CCCCCCCCHHHHHHHHhhc----cCCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchH
Q psy9061 4 WCPPGRKSGKGYFVYAK-GSKARPVNDGALAILKKYS----LQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASP 78 (99)
Q Consensus 4 ~grlGrKtG~GfY~Y~~-g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~di 78 (99)
+|++|||||+|||+|++ +++....++++.+++.+.. ..+ ..++.++|+|||+.+++|||++|++|||+.+++||
T Consensus 308 ~g~lG~k~g~Gfy~y~~~g~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dI 386 (463)
T 1zcj_A 308 AGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ-RTISKEEILERCLYSLINEAFRILEEGMAARPEHI 386 (463)
T ss_dssp TTCCBGGGTBSSEEESSTTCSCEEECHHHHHHHHHHHHHTTCCC-CCCCHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHH
T ss_pred CCCCeeecCCeeccCCCCCCCCCCCCHHHHHHHHHHHHHcCCCc-ccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 69999999999999964 3222346888777765432 112 23678999999999999999999999999889999
Q ss_pred HHHHHhhcCCCC---cccccc
Q psy9061 79 VYDHHLDGNLEP---GHSRHV 96 (99)
Q Consensus 79 D~~~~~g~G~p~---gp~~~~ 96 (99)
|.+|++|+|||+ |||+..
T Consensus 387 D~a~~~G~G~p~~~gGP~~~~ 407 (463)
T 1zcj_A 387 DVIYLHGYGWPRHKGGPMFYA 407 (463)
T ss_dssp HHHHHHHSCCCGGGCCHHHHH
T ss_pred HHHHHhCCCCCCCCcChHHHH
Confidence 999999999999 999864
No 4
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=99.87 E-value=1.1e-22 Score=160.76 Aligned_cols=49 Identities=22% Similarity=0.104 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
+..+|+|||+.+|+|||++|++|||+ ||+|||.+|++|+|||+|||+..
T Consensus 385 ~~g~i~~Rll~~~~nEA~~~l~eGva-s~~diD~a~~~G~G~P~GPl~~~ 433 (483)
T 3mog_A 385 YPGMLIWRTVAMIINEALDALQKGVA-SEQDIDTAMRLGVNYPYGPLAWG 433 (483)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHSCCSSCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCCCHHHHH
Confidence 35689999999999999999999998 99999999999999999999853
No 5
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=99.86 E-value=2.9e-22 Score=164.27 Aligned_cols=92 Identities=27% Similarity=0.416 Sum_probs=76.4
Q ss_pred CCCCccccCceeEecc-C--CCCCCCCCHHHHHHHHhhccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHH
Q psy9061 4 WCPPGRKSGKGYFVYA-K--GSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVY 80 (99)
Q Consensus 4 ~grlGrKtG~GfY~Y~-~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~ 80 (99)
+|++|||||+|||+|+ + +++++.+|+++.+++...+. +...++.++|++|++.+++|||++||+|||+.+++|||+
T Consensus 578 ~g~lG~k~g~GfY~y~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~ 656 (715)
T 1wdk_A 578 AKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVY-EQRDVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADM 656 (715)
T ss_dssp TTCCBTTTTBSSSEEC-------CEECCTHHHHHHGGGCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHH
T ss_pred CchhhhcCCcEEEecccCcCCCCcCCCCHHHHHHHhhhcc-CccCCCHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHH
Confidence 6999999999999996 3 32234589999888864332 122368899999999999999999999999999999999
Q ss_pred HHHhhcCCCC---cccccc
Q psy9061 81 DHHLDGNLEP---GHSRHV 96 (99)
Q Consensus 81 ~~~~g~G~p~---gp~~~~ 96 (99)
+|++|+|||+ |||+..
T Consensus 657 ~~~~G~g~p~~~GGp~~~~ 675 (715)
T 1wdk_A 657 GLVYGIGFPLFRGGALRYI 675 (715)
T ss_dssp HHHHHTCCCGGGCCHHHHH
T ss_pred HHHhCCCCCCCCCCHHHHH
Confidence 9999999999 999754
No 6
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=99.83 E-value=9.6e-22 Score=161.52 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=56.5
Q ss_pred CCCCCccccCceeEeccCCCCCCCCCHHHHHHHHhhcc-CC----c--cccCHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q psy9061 3 FWCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSL-QP----Q--SALKDEDLQLRMVSRFVNEAVLCLEETILNSP 75 (99)
Q Consensus 3 ~~grlGrKtG~GfY~Y~~g~~~~~~~~~~~~~~~~~~~-~~----~--~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~ 75 (99)
-+|++|||||+|||+|+ ++++..+|+++..++...+. .+ . ..++.++|++|++.+++|||++|++|||+.++
T Consensus 573 ~~g~lG~k~g~GfY~y~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~nea~~~l~egi~~~~ 651 (725)
T 2wtb_A 573 EDKRAGEATRKGFYLYD-DKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAEGIAVKA 651 (725)
T ss_dssp TTC----------------------CCCCCTTSHHHHHHTCCSCCCTTTTCCHHHHHHHHHHHHHHHHHHHHHTTSSSCH
T ss_pred HCCCceecCCceeEeCC-CCccCCCCHHHHHHHHhhhhhccccchhhcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 36999999999999995 43222366665444332110 00 0 13678999999999999999999999999999
Q ss_pred chHHHHHHhhcCCCC---cccccc
Q psy9061 76 ASPVYDHHLDGNLEP---GHSRHV 96 (99)
Q Consensus 76 ~diD~~~~~g~G~p~---gp~~~~ 96 (99)
+|||++|++|+|||+ |||+..
T Consensus 652 ~diD~~~~~G~g~p~~~GGp~~~~ 675 (725)
T 2wtb_A 652 ADLDIAGIMGMGFPPYRGGIMFWA 675 (725)
T ss_dssp HHHHHHHHHHHCCCGGGCCHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHH
Confidence 999999999999999 999754
No 7
>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}
Probab=99.61 E-value=1.8e-16 Score=103.34 Aligned_cols=49 Identities=20% Similarity=0.068 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
+..+|+|||+.+++|||++|++|||+ |++|||.+|++|+|||+|||+..
T Consensus 15 ~~gfi~nRll~~~~~eA~~ll~eGva-~~~dID~a~~~g~G~p~GPf~~~ 63 (110)
T 3ctv_A 15 TDKINPMDFTFVEINEAVKLVEMGVA-TPQDIDTAIKLGLNRPFGPFELA 63 (110)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHTTCSSCHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHcCCCCccHHHHH
Confidence 45689999999999999999999999 99999999999999999999864
No 8
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=99.05 E-value=3e-11 Score=91.41 Aligned_cols=49 Identities=20% Similarity=0.111 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC---Ccccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE---PGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p---~gp~~~~ 96 (99)
...+|+|||+.+++|||+++++||++ |++|||.+|..|+|+| ||||++.
T Consensus 190 ~pGFi~NRl~~~~~~EA~~lv~eGva-s~edID~~~~~g~g~~~a~mGPf~~~ 241 (319)
T 3ado_A 190 IDGFVLNRLQYAIISEAWRLVEEGIV-SPSDLDLVMSDGLGMRYAFIGPLETM 241 (319)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHTTHHHHHTTSCHHHHH
T ss_pred CCCEeHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCCcchhhhh
Confidence 56899999999999999999999999 9999999999999987 9999864
No 9
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=98.90 E-value=6.7e-10 Score=81.27 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
...+|+||++.++++||+.++++|++ +|++||.++..++|+|+|||+..
T Consensus 188 ~~g~i~nr~~~~~~~ea~~l~~~g~~-~~~~id~~~~~~~g~~~Gp~~~~ 236 (283)
T 4e12_A 188 KAGYVLNSLLVPLLDAAAELLVDGIA-DPETIDKTWRIGTGAPKGPFEIF 236 (283)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHCCSSCHHHHH
T ss_pred CCCEEehHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCcCHHHHH
Confidence 45679999999999999999999999 99999999999999999999863
No 10
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=98.85 E-value=1.4e-09 Score=79.95 Aligned_cols=47 Identities=15% Similarity=0.036 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCccccc
Q psy9061 48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRH 95 (99)
Q Consensus 48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~ 95 (99)
..++.||++.+++|||++++++|++ ++++||.++..|+|||+|||+.
T Consensus 203 ~g~i~nr~l~~~~~Ea~~l~~~g~~-~~~~id~~~~~g~g~p~GP~~~ 249 (302)
T 1f0y_A 203 PGFIVNRLLVPYLMEAIRLYERGDA-SKEDIDTAMKLGAGYPMGPFEL 249 (302)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHCCSSCHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCCCHHHH
Confidence 3589999999999999999999999 9999999999999999999975
No 11
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=98.77 E-value=2.6e-09 Score=84.39 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
..+|+||++.+++|||+.++++|++ |+++||.++..++|||+|||+..
T Consensus 187 ~Gfi~Nr~l~~~~~Ea~~l~~~g~~-~~~~id~a~~~~~G~p~GP~~l~ 234 (483)
T 3mog_A 187 PGFIVNRVARPYYSEAWRALEEQVA-APEVIDAALRDGAGFPMGPLELT 234 (483)
T ss_dssp TTTTHHHHTHHHHHHHHHHHHTTCS-CHHHHHHHHHHTTCCSSCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhcCCCCCCHHHHH
Confidence 3589999999999999999999999 99999999999999999999863
No 12
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=98.68 E-value=1e-08 Score=80.95 Aligned_cols=47 Identities=9% Similarity=-0.057 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCL-EETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l-~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
...+|+||++.++++||+.++ ++| + ++++||.++. ++|||||||+..
T Consensus 232 ~pGfi~Nril~~~~~EA~~l~~~~G-a-~~e~ID~a~~-~~G~pmGPf~l~ 279 (460)
T 3k6j_A 232 CKSFVFNRLLHVYFDQSQKLMYEYG-Y-LPHQIDKIIT-NFGFLMGPMTVA 279 (460)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTSC-C-CHHHHHHHHH-HHTBSSCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHH-HcCCCcCHHHHH
Confidence 357899999999999999999 666 6 8999999998 999999999864
No 13
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=98.58 E-value=1.1e-08 Score=76.84 Aligned_cols=49 Identities=20% Similarity=0.111 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC---Ccccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE---PGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p---~gp~~~~ 96 (99)
...+|.||++.++++||++++++|++ |+++||.++..|+|+| +|||+..
T Consensus 190 ~~Gfi~Nrll~a~~~EA~~l~~~g~~-~~~~id~a~~~g~g~~~a~~GP~~~~ 241 (319)
T 2dpo_A 190 IDGFVLNRLQYAIISEAWRLVEEGIV-SPSDLDLVMSDGLGMRYAFIGPLETM 241 (319)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHTTHHHHHTTSCHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccccCHHHHH
Confidence 34679999999999999999999999 9999999999999998 8999853
No 14
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=98.47 E-value=5.7e-08 Score=80.39 Aligned_cols=47 Identities=19% Similarity=0.106 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
+..+|+|||+.+++|||+++++|| + ++++||.++. ++|||+|||+..
T Consensus 495 ~pGFi~NRi~~~~~~ea~~l~~eG-~-~~~~id~a~~-~~G~pmGPf~l~ 541 (742)
T 3zwc_A 495 CYGFVGNRMLAPYYNQGFFLLEEG-S-KPEDVDGVLE-EFGFKMGPFRVS 541 (742)
T ss_dssp STTTTHHHHHHHHHHHHHHHHHTT-C-CHHHHHHHHH-HHTCSSCHHHHH
T ss_pred CCCccHHHHhhHHHHHHHHHHHcC-C-CHHHHHHHHH-HcCCCCChHHHH
Confidence 457999999999999999999999 4 6899999886 799999999864
No 15
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}
Probab=98.44 E-value=4e-08 Score=73.33 Aligned_cols=45 Identities=18% Similarity=0.079 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCC---cccccc
Q psy9061 50 DLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEP---GHSRHV 96 (99)
Q Consensus 50 ~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~---gp~~~~ 96 (99)
+|+||++.++++||+.++++|+ ++++||.++..++|+|+ |||+..
T Consensus 174 fi~Nrll~~~~~EA~~l~~~Gv--~~e~id~~~~~g~g~~~~~~GP~~l~ 221 (293)
T 1zej_A 174 SLVNRFNAAVLSEASRMIEEGV--RAEDVDRVWKHHLGLLYTLFGPLGNL 221 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTC--CHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHhcCCCCCCCCCHHHHH
Confidence 8999999999999999999987 89999999999999999 999853
No 16
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=98.40 E-value=1.2e-07 Score=77.94 Aligned_cols=46 Identities=15% Similarity=-0.013 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
..+|.||++.+++|||+.++++| + ++++||.++ .++|||||||+..
T Consensus 494 ~Gfi~Nril~~~~~Ea~~l~~~G-~-~~e~id~~~-~~~g~p~Gp~~l~ 539 (725)
T 2wtb_A 494 TGFAVNRMFFPYTQAAMFLVECG-A-DPYLIDRAI-SKFGMPMGPFRLC 539 (725)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHTT-C-CHHHHHHHH-HHHTCSSCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHH-HHcCCCCCHHHHH
Confidence 46799999999999999999999 6 899999999 8999999999863
No 17
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=98.36 E-value=1.8e-07 Score=76.79 Aligned_cols=46 Identities=7% Similarity=-0.155 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
..+|+||++.+++|||+.++++| + ++++||.++ .++|||+|||+..
T Consensus 496 ~Gfi~Nril~~~~~Ea~~l~~~G-~-~~~~id~~~-~~~G~p~Gp~~l~ 541 (715)
T 1wdk_A 496 PGFLVNRVLFPYFGGFAKLVSAG-V-DFVRIDKVM-EKFGWPMGPAYLM 541 (715)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHTT-C-CHHHHHHHH-HHHTCSSCHHHHH
T ss_pred CChhhhHHHHHHHHHHHHHHHCC-C-CHHHHHHHH-HHcCCCCCHHHHH
Confidence 46799999999999999999999 6 899999999 8999999999863
No 18
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=98.27 E-value=4e-07 Score=71.17 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCccccc
Q psy9061 48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRH 95 (99)
Q Consensus 48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~ 95 (99)
..++.||++.++++||++++++| + ++++||.++. ++|||+|||+.
T Consensus 217 ~gfi~Nrll~~~~~ea~~l~~~G-~-~~~~id~~~~-~~g~p~Gp~~l 261 (463)
T 1zcj_A 217 YGFVGNRMLAPYYNQGFFLLEEG-S-KPEDVDGVLE-EFGFKMGPFRV 261 (463)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHTT-C-CHHHHHHHHH-HHTCSSCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHH-HcCCCCcHHHH
Confidence 56799999999999999999999 6 8999999998 99999999975
No 19
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}
Probab=97.50 E-value=2.1e-05 Score=58.48 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=15.6
Q ss_pred CCCCccccCceeEeccC
Q psy9061 4 WCPPGRKSGKGYFVYAK 20 (99)
Q Consensus 4 ~grlGrKtG~GfY~Y~~ 20 (99)
+|++|+|||+|||+|++
T Consensus 257 ~G~lG~Ktg~Gfy~y~~ 273 (293)
T 1zej_A 257 KGEVGVKAGKGIYEYGP 273 (293)
T ss_dssp TTCCBGGGTBSSSBCCT
T ss_pred CCCCccccCCEeeecCc
Confidence 69999999999999954
No 20
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=59.45 E-value=5 Score=26.86 Aligned_cols=43 Identities=21% Similarity=0.088 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCccc
Q psy9061 47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHS 93 (99)
Q Consensus 47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~ 93 (99)
++.|.++.++.+-+|+|.+-+++-.. +.+-. +.-|++.|||-|
T Consensus 101 eD~E~LeDLI~aAvNdA~~ka~e~~~---e~M~~-ltgGl~lpPG~f 143 (143)
T 1ybx_A 101 DDVEMLQDLILAAVNEALRKADEMVT---AEISK-ITGGLGGIPGLF 143 (143)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HC----------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HhCCCCCCCCCC
Confidence 56789999999999999999988543 33333 334666677743
No 21
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=57.93 E-value=4.7 Score=28.68 Aligned_cols=28 Identities=11% Similarity=-0.075 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHH---HcCCCCCcch--HH
Q psy9061 51 LQLRMVSRFVNEAVLCL---EETILNSPAS--PV 79 (99)
Q Consensus 51 i~~Rll~~~vnEA~~~l---~eGv~~s~~d--iD 79 (99)
.....+..++++|.+++ ++|++ +++| +|
T Consensus 144 sh~nhLv~L~~~A~~ll~~~~~g~a-~~~d~~~~ 176 (232)
T 3dfu_A 144 TYAGFLSTLQRDASYFLDEFLGDPD-VTSDIVMD 176 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-Chhhhhhh
Confidence 45777889999999999 99999 8888 55
No 22
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=57.72 E-value=0.13 Score=37.67 Aligned_cols=43 Identities=0% Similarity=-0.163 Sum_probs=32.6
Q ss_pred HHHHH---HHHHHHHHH-------HHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061 50 DLQLR---MVSRFVNEA-------VLCLEETILNSPASPVYDHHLDGNLEPGHSRHV 96 (99)
Q Consensus 50 ~i~~R---ll~~~vnEA-------~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~ 96 (99)
+|.+| .++++++|| ..++++|++ +++++|..+..+ ++||++.+
T Consensus 172 ~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~-~~~~id~~~~~~---~~~~~ei~ 224 (317)
T 2ewd_A 172 NVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLI-TQEQIDEIVCHT---RIAWKEVA 224 (317)
T ss_dssp CEEBCSSTTCEECGGGCEETTEEHHHHHHTTSS-CHHHHHHHHHHH---HHHHHHHH
T ss_pred EEEecCCCceeEEeeccccCCEEHHHHHhccCC-CHHHHHHHHHHH---HhhHHHHH
Confidence 45566 777888888 888999988 889999987755 56666543
No 23
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=48.62 E-value=22 Score=24.98 Aligned_cols=36 Identities=8% Similarity=-0.286 Sum_probs=28.1
Q ss_pred HHHHHH----HHHHHHHHHHHcCCCCCcchHHHHHHhhcCC
Q psy9061 52 QLRMVS----RFVNEAVLCLEETILNSPASPVYDHHLDGNL 88 (99)
Q Consensus 52 ~~Rll~----~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~ 88 (99)
.+.++. .+++|+..+.+..-+ ++++++.++..+.+.
T Consensus 175 ~~n~~~~~~~~~~~Ea~~l~~~~G~-~~~~~~~~~~~~~~~ 214 (302)
T 2h78_A 175 CNNQLLAVLMIGTAEAMALGVANGL-EAKVLAEIMRRSSGG 214 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHcCCCC
Confidence 455554 489999999998888 899999988876543
No 24
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=44.74 E-value=9 Score=27.58 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=8.4
Q ss_pred ccccCceeEeccCCC
Q psy9061 8 GRKSGKGYFVYAKGS 22 (99)
Q Consensus 8 GrKtG~GfY~Y~~g~ 22 (99)
|++.|.|+|.|++|+
T Consensus 8 ~~~~G~g~~~~~dG~ 22 (261)
T 2f69_A 8 NIRHGVCWIYYPDGG 22 (261)
T ss_dssp ---CCCEEEECTTSC
T ss_pred CceecceEEEeCCCC
Confidence 667777777777654
No 25
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=42.25 E-value=42 Score=19.52 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHcC---CCCCcchHHHHHH
Q psy9061 52 QLRMVSRFVNEAVLCLEET---ILNSPASPVYDHH 83 (99)
Q Consensus 52 ~~Rll~~~vnEA~~~l~eG---v~~s~~diD~~~~ 83 (99)
++--+..++.||+.+..-+ .+ +.+|||.|+.
T Consensus 36 vEyr~~eI~qeA~kfmrHakRk~L-t~~DI~~Alk 69 (70)
T 1taf_B 36 VSIKLKRIVQDAAKFMNHAKRQKL-SVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSB-CHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCee-cHHHHHHHHc
Confidence 4445566888999999766 77 7899999875
No 26
>1g2r_A Hypothetical cytosolic protein; NUSA-INFB operon, structural genomics, PSI, protein structure initiative; 1.35A {Streptococcus pneumoniae} SCOP: d.192.1.1
Probab=35.12 E-value=14 Score=22.95 Aligned_cols=15 Identities=27% Similarity=0.813 Sum_probs=12.5
Q ss_pred CCccccCceeEeccC
Q psy9061 6 PPGRKSGKGYFVYAK 20 (99)
Q Consensus 6 rlGrKtG~GfY~Y~~ 20 (99)
..|++.|+|+|.-.+
T Consensus 41 ~~~k~~GRGaYvc~~ 55 (100)
T 1g2r_A 41 PTGKANGRGAYIKLD 55 (100)
T ss_dssp TTSCCCSEEEEEESC
T ss_pred CCCCCCCCEEEeCCC
Confidence 358999999999864
No 27
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=34.65 E-value=6.4 Score=29.70 Aligned_cols=19 Identities=21% Similarity=0.632 Sum_probs=13.9
Q ss_pred ceeEeccCCCCCCCCCHHHHHH
Q psy9061 13 KGYFVYAKGSKARPVNDGALAI 34 (99)
Q Consensus 13 ~GfY~Y~~g~~~~~~~~~~~~~ 34 (99)
.|||.|++|+ ..||++.++
T Consensus 297 eg~ylyp~g~---~~npdl~~l 315 (323)
T 3op0_A 297 DGFYLYPDGK---THNPDLTEL 315 (323)
T ss_dssp TTSSCEETTC---SCCCCCHHH
T ss_pred cceeECCCCC---cCCcCHHHH
Confidence 4799999873 567776555
No 28
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=28.41 E-value=60 Score=22.12 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=25.9
Q ss_pred HHHHHH--HHHHHHHHHHHHcCCCCCcchH--------HHHHHhhc-CCCCcccc
Q psy9061 51 LQLRMV--SRFVNEAVLCLEETILNSPASP--------VYDHHLDG-NLEPGHSR 94 (99)
Q Consensus 51 i~~Rll--~~~vnEA~~~l~eGv~~s~~di--------D~~~~~g~-G~p~gp~~ 94 (99)
+.+++. ...+.|++ +.+.|+ +++++ +.++.++. +.++||+.
T Consensus 180 l~~~~~~~~~~~~eal-~~~~Gl--~~~~~~~l~~~~~~~~~~~~~~~~~~GP~~ 231 (266)
T 3d1l_A 180 FTCNFTNHMYALAAEL-LKKYNL--PFDVMLPLIDETARKVHELEPKTAQTGPAI 231 (266)
T ss_dssp HHHHHHHHHHHHHHHH-HHHTTC--CGGGGHHHHHHHHHHHHHSCHHHHCCSTTT
T ss_pred HHHHHHHHHHHHHHHH-HHHcCC--CHHHHHHHHHHHHHHHHhcChhhhCCCCCc
Confidence 566666 45666663 356776 57777 55555554 66788874
No 29
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=25.12 E-value=1.2e+02 Score=22.50 Aligned_cols=40 Identities=18% Similarity=0.074 Sum_probs=34.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhh
Q psy9061 45 ALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLD 85 (99)
Q Consensus 45 ~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g 85 (99)
.++.+++.++++.+.-|-+..+|+-|.. ++..+-..+..+
T Consensus 208 ~i~~e~~~~~~~~~~~~~~~lsl~~~yp-t~~s~~~~i~~a 247 (319)
T 3iz5_s 208 DLTEDDLMEKFASGVSMVASVSLAISYP-TIAAAPHMFLNG 247 (319)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHTCC-STTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 4678899999999999999999999998 778777666544
No 30
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=22.45 E-value=1.7e+02 Score=20.98 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=32.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhh
Q psy9061 45 ALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLD 85 (99)
Q Consensus 45 ~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g 85 (99)
.++.+++...+..+..+-+..+++-|+. +++.++..+..+
T Consensus 207 ~i~~e~~~~~~~~a~~~a~~lsl~~~~p-t~~s~~~~i~ka 246 (284)
T 3a1y_G 207 AIDEQEYIDMLQKAYMHAFNLAVNIAYP-TPETIEAIIQKA 246 (284)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 3667888899999999989999999998 788888766543
No 31
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=22.00 E-value=1e+02 Score=16.83 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHhhccCCccccCHHHHHHHHHH
Q psy9061 26 PVNDGALAILKKYSLQPQSALKDEDLQLRMVS 57 (99)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~ 57 (99)
++++++..++.... ..-.-|+.+|+.|+|.
T Consensus 5 EvDdelY~YIas~t--~~igEsaSdiLRRll~ 34 (50)
T 1xrx_A 5 EVDDELYSYIASHT--KHIGESASDILRRMLK 34 (50)
T ss_dssp EECHHHHHHHHTTC--SSTTCCHHHHHHHHHT
T ss_pred eecHHHHHHHHHhc--hhhccCHHHHHHHHHc
Confidence 36788888876422 1112367789999884
Done!