RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9061
         (99 letters)



>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha
           subunit, C-terminal domain {Pseudomonas fragi [TaxId:
           296]}
          Length = 124

 Score = 35.6 bits (81), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 8   GRKSGKGYFVYAKGSKARP---VNDGALAILKK 37
           G+K+GKG++ Y    K +    V+   L +LK 
Sbjct: 86  GQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKP 118



 Score = 24.4 bits (52), Expect = 2.6
 Identities = 5/44 (11%), Positives = 10/44 (22%), Gaps = 11/44 (25%)

Query: 54 RMVSRFVNEAVLCLEE-----------TILNSPASPVYDHHLDG 86
          R++  +       +                  P  P Y   + G
Sbjct: 6  RVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVG 49


>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha
          subunit, C-terminal domain {Pseudomonas fragi [TaxId:
          296]}
          Length = 95

 Score = 33.7 bits (77), Expect = 7e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 48 DEDLQLRMVSRFVNEAVLCLEETILNSPA 76
          DED+   M+     E V CLE+ I+ + A
Sbjct: 4  DEDIINWMMIPLCLETVRCLEDGIVETAA 32


>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA
          dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 99

 Score = 24.8 bits (53), Expect = 1.3
 Identities = 5/11 (45%), Positives = 10/11 (90%)

Query: 8  GRKSGKGYFVY 18
          G+K+G+G++ Y
Sbjct: 88 GKKTGEGFYKY 98


>d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine
           516 synthase RsuA {Escherichia coli [TaxId: 562]}
          Length = 172

 Score = 24.7 bits (53), Expect = 1.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 83  HLDGNLEPGHSRHVTSH 99
            LD +L PG  R +T  
Sbjct: 150 TLDADLAPGEYRPLTEE 166


>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor
          eIF4G {Human (Homo sapiens) [TaxId: 9606]}
          Length = 193

 Score = 24.8 bits (54), Expect = 1.9
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 10/41 (24%)

Query: 43 QSALKDEDLQLRMVS--------RFVNEAVLCLEETILNSP 75
          ++AL +E+L+ +  +          + EAV C++E  L SP
Sbjct: 1  KAALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQE--LASP 39


>d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide
          ribonucleotide synthetase PurP {Thermococcus
          kodakaraensis [TaxId: 311400]}
          Length = 213

 Score = 23.5 bits (51), Expect = 6.0
 Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 4/35 (11%)

Query: 7  PGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQ 41
           G + G G+F+         ++     + + Y ++
Sbjct: 34 EGPRGGSGHFIVEGSELEERLST----LEEPYRVE 64


>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit
          {Alcaligenes faecalis [TaxId: 511]}
          Length = 679

 Score = 23.2 bits (48), Expect = 8.9
 Identities = 7/24 (29%), Positives = 8/24 (33%)

Query: 9  RKSGKGYFVYAKGSKARPVNDGAL 32
             G  Y +     KA  VN G  
Sbjct: 72 EHDGARYDIMVVPDKACVVNSGLS 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 366,593
Number of extensions: 13833
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 11
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)