BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9066
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 12/128 (9%)
Query: 26 VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
+ +A W W + T + +G + P + GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 361 IPDAFW--WAVVSMTTVGYGDMV-PTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 417
Query: 86 HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGL--VHNDVGSSWE 143
HRET+ E+ Q+Q + VTSCP +P + D SRS + + + V +S E
Sbjct: 418 HRETEGEE-QAQ-YLQVTSCPKIPSS-----PDLKKSRSASTISKSDYMEIQEGVNNSNE 470
Query: 144 DMQSQNFN 151
D + +N
Sbjct: 471 DFREENLK 478
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 12/128 (9%)
Query: 26 VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
+ +A W W + T + +G + P + GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 361 IPDAFW--WAVVSMTTVGYGDMV-PTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 417
Query: 86 HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGL--VHNDVGSSWE 143
HRET+ E+ Q+Q + VTSCP +P + D SRS + + + V +S E
Sbjct: 418 HRETEGEE-QAQ-YLQVTSCPKIPSS-----PDLKKSRSASTISKSDYMEIQEGVNNSNE 470
Query: 144 DMQSQNFN 151
D + +N
Sbjct: 471 DFREENLK 478
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 78/133 (58%), Gaps = 12/133 (9%)
Query: 26 VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
+ +A W W + T + +G + P + GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 376 IPDAFW--WAVVSMTTVGYGDMV-PTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 432
Query: 86 HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGL--VHNDVGSSWE 143
HRET+ E+ Q+Q + VTS P +P + D SRS + + + V +S E
Sbjct: 433 HRETEGEE-QAQ-YLQVTSSPKIPSS-----PDLKKSRSASTISKSDYMEIQEGVNNSNE 485
Query: 144 DMQSQNFNHVTSC 156
D + +N S
Sbjct: 486 DFREENLKTANST 498
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 78/133 (58%), Gaps = 12/133 (9%)
Query: 26 VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
+ +A W W + T + +G + P + GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 376 IPDAFW--WAVVSMTTVGYGDMV-PTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 432
Query: 86 HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGL--VHNDVGSSWE 143
HRET+ E+ Q+Q + VTS P +P + D SRS + + + V +S E
Sbjct: 433 HRETEGEE-QAQ-YLQVTSSPKIPSS-----PDLKKSRSASTISKSDYMEIQEGVNNSNE 485
Query: 144 DMQSQNFNHVTSC 156
D + +N S
Sbjct: 486 DFREENLKTANST 498
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W T T + +G + PV +WG++V + +AG+ + L V + +F R
Sbjct: 64 RALW--WACETATTVXYG-DLYPVTLWGRLVAVVVMVAGITSFGL---VTAALATWFVGR 117
Query: 88 ETDQE 92
E ++
Sbjct: 118 EQERR 122
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W T T + +G + PV +WG++V + +AG+ + L V + +F R
Sbjct: 64 RALW--WSVETATTVGYG-DLYPVTLWGRLVAVVVMVAGITSFGL---VTAALATWFVGR 117
Query: 88 ETDQE 92
E ++
Sbjct: 118 EQERR 122
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W T T + +G + PV +WG++V + +AG+ + L + + +F R
Sbjct: 43 RALW--WSVETATTVGYG-DLYPVTLWGRLVAVVVMVAGITSFGLVTAALAT---WFVGR 96
Query: 88 ETDQE 92
E ++
Sbjct: 97 EQERR 101
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W T T + +G + PV +WG++V + +AG+ + L V + +F R
Sbjct: 71 RALW--WSVATATTVGYG-DLYPVTLWGRLVAVVVMVAGITSFGL---VTAALATWFVGR 124
Query: 88 ETDQED 93
E ++
Sbjct: 125 EQERRG 130
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
+A+W W T T + +G + PV +WG+ V + +AG+ + L V + +F R
Sbjct: 87 DALW--WSVETATTVGYG-DLYPVTLWGRCVAVVVMVAGITSYGL---VFAAVATWFVGR 140
Query: 88 ETDQE 92
E ++
Sbjct: 141 EQERR 145
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W T T + +G + PV +WG++V + +AG+ + L V + +F R
Sbjct: 43 RALW--WSVETATTVGYG-DLCPVTLWGRLVAVVVMVAGITSFGL---VTAALATWFVGR 96
Query: 88 ETDQE 92
E ++
Sbjct: 97 EQERR 101
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W T T + +G + PV +WG++V + +AG+ + L V + +F R
Sbjct: 42 RALW--WSVETATTVGYG-DLCPVTLWGRLVAVVVMVAGITSFGL---VTAALATWFVGR 95
Query: 88 ETDQE 92
E ++
Sbjct: 96 EQERR 100
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNF------ 81
A+W W T T + +G + PV +WG++V + +AG+ + L + + F
Sbjct: 70 RALW--WSVETATTVGYG-DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQ 126
Query: 82 ---NYFYHRETDQEDMQSQN 98
+ H E E+ ++
Sbjct: 127 QQQQFVRHSEKAAEEAYTRT 146
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W +T T + +G + PV +WG+ V + +AG+ + L V + +F R
Sbjct: 43 RALW--WSVSTATTVGYG-DLYPVTLWGRCVAVVVMVAGITSFGL---VTAALATWFVGR 96
Query: 88 ETDQE 92
E ++
Sbjct: 97 EQERR 101
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 29 AMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE 88
A+W W T T + +G + PV +WG+ V + +AG+ + L V + +F RE
Sbjct: 65 ALW--WSVETATTVGYG-DLYPVTLWGRCVAVVVMVAGITSFGL---VTAALATWFVGRE 118
Query: 89 TDQE 92
++
Sbjct: 119 QERR 122
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W T T + +G + PV +WG++V + +AG+ + L V + +F R
Sbjct: 64 RALW--WSVETATCVGYG-DLYPVTLWGRLVAVVVMVAGITSFGL---VTAALATWFVGR 117
Query: 88 ETDQE 92
E ++
Sbjct: 118 EQERR 122
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W T T + +G + PV +WG+ V + +AG+ + L V + +F R
Sbjct: 64 RALW--WSVETATTVGYG-DLYPVTLWGRCVAVVVMVAGITSFGL---VTAALATWFVGR 117
Query: 88 ETDQE 92
E ++
Sbjct: 118 EQERR 122
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W T T + +G + PV +WG+ V + +AG+ + L V + +F R
Sbjct: 64 RALW--WSVETATTVGYG-DLYPVTLWGRCVAVVVMVAGITSFGL---VTAALATWFVGR 117
Query: 88 ETDQE 92
E ++
Sbjct: 118 EQERR 122
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W T T + +G + PV +WG+ V + +AG+ + L V + +F R
Sbjct: 64 RALW--WSVETATTVGYG-DLYPVTLWGRCVAVVVMVAGITSFGL---VTAALATWFVGR 117
Query: 88 ETDQE 92
E ++
Sbjct: 118 EQERR 122
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W T T + +G + PV +WG+ V + +AG+ + L V + +F R
Sbjct: 43 RALW--WSVQTATTVGYG-DLYPVTLWGRCVAVVVMVAGITSFGL---VTAALATWFVGR 96
Query: 88 ETDQE 92
E ++
Sbjct: 97 EQERR 101
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W T T + +G + PV +WG+ V + +AG+ + L V + +F R
Sbjct: 64 RALW--WSVETATTVGYG-DLYPVTLWGRCVAVVVMVAGITSFGL---VTAALATWFVGR 117
Query: 88 ETDQE 92
E ++
Sbjct: 118 EQERR 122
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W T T + +G + PV +WG+ V + +AG+ + L V + +F R
Sbjct: 43 RALW--WSVETATTVGYG-DLYPVTLWGRCVAVVVMVAGITSFGL---VTAALATWFVGR 96
Query: 88 ETDQE 92
E ++
Sbjct: 97 EQERR 101
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W +T T + +G + PV +WG+ V + +AG+ + L V + +F R
Sbjct: 64 RALW--WSVHTATTVGYG-DLYPVTLWGRCVAVVVMVAGITSAGL---VTAALATWFVGR 117
Query: 88 ETDQED 93
E ++
Sbjct: 118 EQERRG 123
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W T T + +G + PV +WG+ V + +AG+ + L V + +F R
Sbjct: 64 RALW--WSVATATTVGYG-DLYPVTLWGRCVAVVVMVAGITSFGL---VTAALATWFVGR 117
Query: 88 ETDQED 93
E ++
Sbjct: 118 EQERRG 123
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
A+W W T T + +G + PV +WG+ V + +AG+ + L V + +F R
Sbjct: 43 RALW--WSVATATTVGYG-DLYPVTLWGRCVAVVVMVAGITSFGL---VTAALATWFVGR 96
Query: 88 ETDQE 92
E ++
Sbjct: 97 EQERR 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,675,886
Number of Sequences: 62578
Number of extensions: 271679
Number of successful extensions: 466
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 29
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)