Query psy9066
Match_columns 275
No_of_seqs 223 out of 1191
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 18:01:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1545|consensus 99.8 2.8E-22 6E-27 192.9 -2.0 92 12-108 378-471 (507)
2 KOG3713|consensus 99.7 1.5E-18 3.3E-23 170.4 5.5 77 21-100 373-449 (477)
3 KOG4390|consensus 99.5 3.7E-16 8E-21 152.4 -3.5 71 21-94 352-422 (632)
4 KOG1419|consensus 99.5 9.9E-15 2.2E-19 146.1 5.4 77 16-95 260-336 (654)
5 PRK10537 voltage-gated potassi 99.5 1.9E-14 4.1E-19 138.4 7.0 92 22-118 165-257 (393)
6 PF01007 IRK: Inward rectifier 99.3 1.8E-13 3.8E-18 129.8 -1.1 156 23-187 82-250 (336)
7 PF07885 Ion_trans_2: Ion chan 99.3 3.3E-12 7.2E-17 95.6 4.8 58 22-82 21-78 (79)
8 PLN03192 Voltage-dependent pot 99.1 1.6E-10 3.4E-15 118.8 6.1 60 24-86 249-308 (823)
9 KOG1418|consensus 98.7 2.5E-08 5.3E-13 90.3 5.8 62 21-85 111-172 (433)
10 KOG1420|consensus 98.6 8E-09 1.7E-13 105.4 1.0 125 24-153 287-413 (1103)
11 KOG0498|consensus 98.4 2.7E-07 5.9E-12 95.8 5.6 61 24-87 293-353 (727)
12 KOG4404|consensus 97.8 3.5E-05 7.5E-10 74.3 5.7 58 24-84 185-250 (350)
13 KOG3684|consensus 97.6 7.4E-05 1.6E-09 74.7 5.1 55 24-81 286-340 (489)
14 KOG3827|consensus 97.6 6.3E-05 1.4E-09 73.8 3.9 152 22-181 109-273 (400)
15 KOG1418|consensus 97.3 5.1E-05 1.1E-09 68.8 0.3 48 24-74 241-296 (433)
16 KOG0501|consensus 97.3 0.0004 8.8E-09 71.9 5.9 59 24-85 422-480 (971)
17 KOG4404|consensus 97.3 0.00019 4.2E-09 69.3 3.3 58 24-84 79-136 (350)
18 PF00520 Ion_trans: Ion transp 96.9 0.00058 1.3E-08 55.1 2.7 58 17-77 137-200 (200)
19 KOG3193|consensus 96.4 0.0013 2.9E-08 67.9 1.7 37 25-64 217-253 (1087)
20 KOG0500|consensus 95.1 0.038 8.3E-07 56.3 5.8 55 24-82 182-236 (536)
21 PF00060 Lig_chan: Ligand-gate 92.5 0.2 4.3E-06 40.0 4.2 57 23-83 42-98 (148)
22 KOG0499|consensus 83.4 0.98 2.1E-05 47.7 3.1 49 25-77 403-451 (815)
23 PRK10669 putative cation:proto 73.4 3.6 7.7E-05 41.3 3.6 20 97-118 415-434 (558)
24 KOG1054|consensus 72.5 2.1 4.6E-05 45.4 1.8 54 25-82 595-648 (897)
25 COG2165 PulG Type II secretory 49.9 33 0.00072 26.7 4.5 33 56-88 8-40 (149)
26 COG1226 Kch Kef-type K+ transp 48.2 6.4 0.00014 31.5 0.2 45 25-72 117-161 (212)
27 PRK03659 glutathione-regulated 43.3 25 0.00053 36.2 3.5 20 97-118 398-417 (601)
28 KOG4440|consensus 40.8 26 0.00057 37.8 3.3 53 24-79 612-664 (993)
29 PRK03562 glutathione-regulated 38.3 37 0.00081 35.1 3.9 20 97-118 398-417 (621)
30 KOG1052|consensus 37.7 30 0.00066 35.2 3.2 56 23-82 379-434 (656)
31 TIGR01710 typeII_sec_gspG gene 31.8 1E+02 0.0022 25.6 4.9 29 58-86 3-31 (134)
32 PF09538 FYDLN_acid: Protein o 25.1 33 0.00071 28.4 0.8 14 147-160 16-29 (108)
33 TIGR00933 2a38 potassium uptak 23.6 62 0.0013 31.3 2.5 43 24-68 230-273 (390)
34 PF11359 gpUL132: Glycoprotein 22.9 1.3E+02 0.0028 28.4 4.3 93 50-149 43-146 (235)
35 COG0581 PstA ABC-type phosphat 22.5 1.6E+02 0.0035 28.4 5.0 41 55-95 71-111 (292)
36 PHA02669 hypothetical protein; 22.5 2.5E+02 0.0055 25.8 5.9 52 50-101 3-54 (210)
37 TIGR01711 gspJ general secreti 21.7 2.1E+02 0.0046 25.2 5.3 26 58-83 3-28 (192)
38 PRK10506 hypothetical protein; 21.4 2E+02 0.0043 24.6 4.9 32 56-87 9-40 (162)
39 TIGR01707 gspI general secreti 21.0 2.5E+02 0.0053 22.7 5.1 28 58-85 2-29 (101)
40 PF12273 RCR: Chitin synthesis 20.5 85 0.0018 25.9 2.4 10 96-105 32-41 (130)
41 PF14163 SieB: Superinfection 20.1 2.6E+02 0.0056 23.5 5.3 38 55-92 33-70 (151)
No 1
>KOG1545|consensus
Probab=99.83 E-value=2.8e-22 Score=192.92 Aligned_cols=92 Identities=55% Similarity=0.911 Sum_probs=81.2
Q ss_pred eeEEeeec--ccccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q psy9066 12 ELLFGIHI--RLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET 89 (275)
Q Consensus 12 ~LLfGt~g--~~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~k 89 (275)
+++|.... ...|.||+|||| |++||||||||| |++|.|+.|||++.+|+++||+++|+|+++|+++|+++|+|++
T Consensus 378 avYFAEade~~S~F~SIPdaFW--wavVTMTTVGYG-Dm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhrEt 454 (507)
T KOG1545|consen 378 AVYFAEADEPESHFSSIPDAFW--WAVVTMTTVGYG-DMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET 454 (507)
T ss_pred eeeeeecCCCccCCCcCcccce--EEEEEEEeeccc-cceecccCceehhhHHhhhhheEecccccEEEecccceeeccc
Confidence 34444443 456799999999 999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhcCCCEEeCCCC
Q psy9066 90 DQEDMQSQNFNHVTSCPYL 108 (275)
Q Consensus 90 r~ek~~~~l~nHvIiCGy~ 108 (275)
+.+++ .+ ..|+..|+.+
T Consensus 455 e~ee~-~~-~~~~~~~~~~ 471 (507)
T KOG1545|consen 455 EGEEQ-AQ-YLHVDSCQDI 471 (507)
T ss_pred cchhh-hc-ccccccCCCC
Confidence 98874 33 7788888885
No 2
>KOG3713|consensus
Probab=99.74 E-value=1.5e-18 Score=170.42 Aligned_cols=77 Identities=34% Similarity=0.676 Sum_probs=70.6
Q ss_pred cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCC
Q psy9066 21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFN 100 (275)
Q Consensus 21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~n 100 (275)
..|+|||.++| |++||||||||| |++|+|..||+++.++++.||+++|+|+++|+++|...|++++..++..++-+.
T Consensus 373 ~~FtSIPa~~W--WaiVTMTTVGYG-Dm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~~~~~~ 449 (477)
T KOG3713|consen 373 TKFTSIPAGFW--WAVVTMTTVGYG-DMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAPKRREA 449 (477)
T ss_pred CCCccccchhh--eeeEEEeeeccc-CccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhhhhhcc
Confidence 45899999999 999999999999 999999999999999999999999999999999999999998877776555333
No 3
>KOG4390|consensus
Probab=99.53 E-value=3.7e-16 Score=152.37 Aligned_cols=71 Identities=42% Similarity=0.753 Sum_probs=65.9
Q ss_pred cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHH
Q psy9066 21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDM 94 (275)
Q Consensus 21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~ 94 (275)
..|++|+.||| |++|||||+||| |++|.|.+||||+.+|.+.|+++||+|+++|+++|++.|++.+|..|.
T Consensus 352 t~FTsIPaaFW--YTIVTmTTLGYG-DMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQNQRADKR 422 (632)
T KOG4390|consen 352 TKFTSIPAAFW--YTIVTMTTLGYG-DMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKR 422 (632)
T ss_pred cccccCcHhHh--hheeeeeecccc-ccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhhhhhhHH
Confidence 45799999999 999999999999 999999999999999999999999999999999999999986555443
No 4
>KOG1419|consensus
Probab=99.51 E-value=9.9e-15 Score=146.06 Aligned_cols=77 Identities=22% Similarity=0.422 Sum_probs=71.2
Q ss_pred eeecccccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHh
Q psy9066 16 GIHIRLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQ 95 (275)
Q Consensus 16 Gt~g~~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~ 95 (275)
|.-.+.+|.++.||+| |++||+|||||| |++|+|+.||+++..+.++||.+||+|.+++.+.|+...++++|||.-.
T Consensus 260 ~e~~n~~F~TyADALW--WG~ITltTIGYG-Dk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQKHf~ 336 (654)
T KOG1419|consen 260 GEGTNDEFPTYADALW--WGVITLTTIGYG-DKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQKHFN 336 (654)
T ss_pred cccccccchhHHHHHH--hhheeEEeeccC-CcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHH
Confidence 4446788999999999 999999999999 9999999999999999999999999999999999999998888877543
No 5
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.51 E-value=1.9e-14 Score=138.37 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=70.4
Q ss_pred ccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHhhhhHHHhhhcCC
Q psy9066 22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNY-FYHRETDQEDMQSQNFN 100 (275)
Q Consensus 22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~-~y~r~kr~ek~~~~l~n 100 (275)
.+.++.|||| |+++|+|||||| |+.|.|..||+++++++++|++++++.++.+...+.. ..++..+.++.....++
T Consensus 165 ~~~s~~dA~y--~svvt~tTvGyG-di~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~~~l~~~~~~~~~~~~~k~ 241 (393)
T PRK10537 165 PIESLSTAFY--FSIVTMSTVGYG-DIVPVSESARLFTISVIILGITVFATSISAIFGPVIRGNLKRLVKGRISHMHRKD 241 (393)
T ss_pred CCCCHHHHHH--hhheeeecccCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC
Confidence 4579999999 999999999999 9999999999999999999999999988877654432 22222111111222479
Q ss_pred CEEeCCCCCCCCCccccc
Q psy9066 101 HVTSCPYLPGTLGEWLVD 118 (275)
Q Consensus 101 HvIiCGy~~g~lge~I~~ 118 (275)
|+++||| ++.++.+.+
T Consensus 242 HvII~G~--g~lg~~v~~ 257 (393)
T PRK10537 242 HFIICGH--SPLAINTYL 257 (393)
T ss_pred eEEEECC--ChHHHHHHH
Confidence 9999999 666665543
No 6
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=99.31 E-value=1.8e-13 Score=129.75 Aligned_cols=156 Identities=14% Similarity=0.126 Sum_probs=108.8
Q ss_pred cchHHHHHHHhhhhceeeceeecCc--ceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCC
Q psy9066 23 QDLVVEAMWQMWGTNTRTELLFGIH--IRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFN 100 (275)
Q Consensus 23 f~Si~DAfW~ywavVTmTTVGYG~D--I~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~n 100 (275)
..++.+||+ |++-|+||+||| . +.|..+.+-++..+-++.|+++.|+.+|.+.+.|++- ++|.+ .-...+
T Consensus 82 ~~~f~~aF~--FSveT~tTIGYG-~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP---~~R~~--tI~FS~ 153 (336)
T PF01007_consen 82 VNSFTSAFL--FSVETQTTIGYG-SRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP---KKRAS--TILFSK 153 (336)
T ss_dssp -TTHHHHHH--HHHHHHTT---S-SSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---CCGGG--SEEE-S
T ss_pred ccchhhhee--EEEEEEEEeccC-CcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---ccccc--eEEEEe
Confidence 468999999 999999999999 8 5688899999999999999999999999999877632 11111 123567
Q ss_pred CEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc--c-----CCCC--CCCcc-cccccC
Q psy9066 101 HVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV--T-----SCPY--LPGTL-GQHMKK 169 (275)
Q Consensus 101 HvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~--s-----~~p~--l~~~~-~~~~~~ 169 (275)
+.++|++++..+-+....+-+.+...++ ....|.++....++|-++. +++++ . ..|. +||+| |+|+++
T Consensus 154 ~AVI~~~dG~~~LmfRv~n~R~~~liea~Vr~~l~~~~~t~eGe~~~~-~~~~L~l~~~~~~~~~~L~~p~tV~H~IDe~ 232 (336)
T PF01007_consen 154 KAVIAPRDGKLCLMFRVANLRKNQLIEAHVRLYLIRDRVTKEGERIRL-RQQDLPLERDQGEDRPFLILPWTVVHVIDED 232 (336)
T ss_dssp SEEEEEETTEEEEEEEEEESSSSSEEEEEEEEEEEEEEE-TTS-EEEE-EEEEEGSSTTTTTTBEEESSEEEEEEE-STT
T ss_pred eeEEeecCCeeEEEEEecCCCcCeeecceEEEEEEEeeecCCCceEEe-eccccccccCCCCCceeeeCCEEEEEeCCCC
Confidence 8999999866666665555555555666 4444677777776666542 44433 2 2466 77888 999999
Q ss_pred CCCCCCcchhhhhhhccc
Q psy9066 170 SSLSESSSDMMELEEGLL 187 (275)
Q Consensus 170 s~~~~~~~~~~e~~e~~~ 187 (275)
||+.+-+.|.|..++.|+
T Consensus 233 SPLy~~t~~~L~~~~~Ei 250 (336)
T PF01007_consen 233 SPLYGLTPEDLAQADFEI 250 (336)
T ss_dssp STTTT--HHHHHCTTEEE
T ss_pred CcchhhccchhccCcEEE
Confidence 999998888888887766
No 7
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.29 E-value=3.3e-12 Score=95.61 Aligned_cols=58 Identities=22% Similarity=0.355 Sum_probs=50.6
Q ss_pred ccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9066 22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFN 82 (275)
Q Consensus 22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~ 82 (275)
+..++.||+| |+++|+||+||| |+.|.|..||+++++.++.|+.++++.++.+.+.+.
T Consensus 21 ~~~~~~da~y--fs~~t~tTvGyG-Di~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 21 EKWSFIDALY--FSFVTITTVGYG-DIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp STTSHHHHHH--HHHHHHTT---S-SSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHH--HHHHHHhcccCC-CccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578999999 999999999999 999999999999999999999999999888876553
No 8
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.06 E-value=1.6e-10 Score=118.75 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=54.3
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 86 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~ 86 (275)
..|..|+| |+++|||||||| |++|.|..+|+++++++++|++++|++++.+++.+.....
T Consensus 249 ~~Yi~slY--wai~TmtTVGYG-Di~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~ 308 (823)
T PLN03192 249 IRYISAIY--WSITTMTTVGYG-DLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTR 308 (823)
T ss_pred HHHHHHHH--HHHHHHhhccCC-CcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999 999999999999 9999999999999999999999999999999886655443
No 9
>KOG1418|consensus
Probab=98.69 E-value=2.5e-08 Score=90.29 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=54.9
Q ss_pred cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9066 21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85 (275)
Q Consensus 21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y 85 (275)
...+++.+|++ |+++++||+||| ++.|.|.+||+++++.+++||.++.+.++-+...+....
T Consensus 111 ~~~W~f~~al~--fs~tv~TTIGYG-~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~ 172 (433)
T KOG1418|consen 111 TQQWSFSSALL--FSITVITTIGYG-NIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSL 172 (433)
T ss_pred CcceecchhHh--hhhheeeeccCC-cccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34479999999 999999999999 999999999999999999999999988888777555443
No 10
>KOG1420|consensus
Probab=98.63 E-value=8e-09 Score=105.42 Aligned_cols=125 Identities=15% Similarity=0.202 Sum_probs=82.3
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCCCEE
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFNHVT 103 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~nHvI 103 (275)
-++.++.| +.+|||+||||| |++-.|..||+|.+++++.|+++||-.++-|...+... ++. .-+.....=+.|++
T Consensus 287 ltyw~cvy--fl~vtmstvgyg-dvyc~t~lgrlfmvffil~glamfasyvpeiielignr-~ky-ggeyk~ehgkkhiv 361 (1103)
T KOG1420|consen 287 LTYWECVY--FLMVTMSTVGYG-DVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNR-KKY-GGEYKAEHGKKHIV 361 (1103)
T ss_pred chhhheee--eeEEEeeecccc-ceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccc-ccc-CceeehhcCCeeEE
Confidence 56788888 999999999999 99999999999999999999999998888776543210 010 11111233478999
Q ss_pred eCCCCC-CCCCcccccCCCCchhhhHhhhcccccCCC-Cchhhhcccccccc
Q psy9066 104 SCPYLP-GTLGEWLVDNSSSRSRKVAAATGLVHNDVG-SSWEDMQSQNFNHV 153 (275)
Q Consensus 104 iCGy~~-g~lge~I~~~~~s~~~~ea~a~~Lv~~di~-~~~e~~q~~~f~~~ 153 (275)
+||+-. .....++.|.-.....+.+.+.-..||-.+ -|-|+.+-|.|..|
T Consensus 362 vcghityesvshflkdflhedrddvdvevvflhr~~pdleleglfkrhft~v 413 (1103)
T KOG1420|consen 362 VCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELEGLFKRHFTQV 413 (1103)
T ss_pred EecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchHHHHhhheeeE
Confidence 999932 112223333222222233344445555555 45788877877644
No 11
>KOG0498|consensus
Probab=98.42 E-value=2.7e-07 Score=95.75 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=56.1
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r 87 (275)
.-|..|+| |++.|||||||| |.+|.+..-++|+++.|++|.+++|+++|.+.+.+...+.|
T Consensus 293 ~kY~~aLy--w~l~tLstvG~g-~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR 353 (727)
T KOG0498|consen 293 LKYVYALY--WGLSTLSTVGYG-LVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSR 353 (727)
T ss_pred HHHHHHHH--HHhhHhhhccCC-ccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHH
Confidence 46899999 999999999999 99999999999999999999999999999998877665554
No 12
>KOG4404|consensus
Probab=97.79 E-value=3.5e-05 Score=74.29 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=49.2
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCc--------chhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGV--------WGKIVGSLCAIAGVLTIALPVPVIVSNFNYF 84 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~--------~GRI~til~il~GI~ifAl~vgvI~s~f~~~ 84 (275)
++|+||+| |.+||+||+||| |.++... .-+.+..+.+++|+.+|+..+.+++-.|...
T Consensus 185 Wsyfds~Y--yCFITltTIGFG-DyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~ 250 (350)
T KOG4404|consen 185 WSYFDSYY--YCFITLTTIGFG-DYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTM 250 (350)
T ss_pred cchhhhhh--eeeeeeeecccc-chhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999 999999999999 9998544 3566888999999999998888877666543
No 13
>KOG3684|consensus
Probab=97.60 E-value=7.4e-05 Score=74.67 Aligned_cols=55 Identities=27% Similarity=0.312 Sum_probs=51.0
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNF 81 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f 81 (275)
.++.+++| ...+|.-++||| |++|.|.+||.++++..+.|.+.-|+.+++|.-.+
T Consensus 286 ~~~~nsmW--li~iTFlsiGYG-DiVP~TycGr~v~l~tGivGa~~sallvAvisRKL 340 (489)
T KOG3684|consen 286 INYLNSMW--LIAITFLSIGYG-DIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL 340 (489)
T ss_pred HHHHhhHH--HHHHHHhhcccC-cccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 46899999 999999999999 99999999999999999999999999999887654
No 14
>KOG3827|consensus
Probab=97.56 E-value=6.3e-05 Score=73.76 Aligned_cols=152 Identities=16% Similarity=0.090 Sum_probs=102.6
Q ss_pred ccchHHHHHHHhhhhceeeceeecCcceecCc--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcC
Q psy9066 22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGV--WGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNF 99 (275)
Q Consensus 22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~--~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~ 99 (275)
...++..||- |++-|-||+||| -.++... .+-++.++-++.|+++=|+++|.+.+..++- +||.+. -...
T Consensus 109 nV~sf~sAFL--FSiETQtTIGYG-~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP---kKRAeT--l~FS 180 (400)
T KOG3827|consen 109 NVHSFTSAFL--FSIETQTTIGYG-FRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP---KKRAET--LIFS 180 (400)
T ss_pred eccchhhhhe--eeeeeeeeeecc-ccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---hhhhhe--eeec
Confidence 3478999999 999999999999 8777554 4566667777899999999999988765532 222222 1245
Q ss_pred CCEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccc-cc-----cCCCC--CCCcc-cccccC
Q psy9066 100 NHVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFN-HV-----TSCPY--LPGTL-GQHMKK 169 (275)
Q Consensus 100 nHvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~-~~-----s~~p~--l~~~~-~~~~~~ 169 (275)
+|.+||=-++-.+-.+...+-+..-..++ ...-|.+.-...|+|-+-.--+. +| +.+|. .|-++ |-|+++
T Consensus 181 ~~AVI~~RDGkLCLmfRVgdlRkShliea~Vraqlik~~~T~EGE~ipl~q~di~vg~d~g~d~~Flv~Plti~H~IDe~ 260 (400)
T KOG3827|consen 181 DHAVIALRDGKLCLMFRVGDLRKSHLIEAHVRAQLIKTRVTKEGEVIPLHQTDIDVGFDTGSDRLFLVWPLTIYHVIDET 260 (400)
T ss_pred cceEEEeeCCceEEEEEecCccccceeeEEEEEEEEEEcccCCcceeecceEEeecccCCCcCceEEEeceEEEEEcCCC
Confidence 78999987644455655554333344555 55566677777878777553222 22 45666 44466 999999
Q ss_pred CCCCC-Ccchhhh
Q psy9066 170 SSLSE-SSSDMME 181 (275)
Q Consensus 170 s~~~~-~~~~~~e 181 (275)
||+.+ +..++.+
T Consensus 261 SPLy~l~~~~l~~ 273 (400)
T KOG3827|consen 261 SPLYDLSRQDLAK 273 (400)
T ss_pred CchhhhChhhhhh
Confidence 99977 4455544
No 15
>KOG1418|consensus
Probab=97.35 E-value=5.1e-05 Score=68.85 Aligned_cols=48 Identities=25% Similarity=0.407 Sum_probs=43.0
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchh--------HHHHHHHHHHHHHHHhhH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGK--------IVGSLCAIAGVLTIALPV 74 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GR--------I~til~il~GI~ifAl~v 74 (275)
.++++||| |+++|+||+||| |++|.+..++ .+..++++.|...++...
T Consensus 241 w~f~~~~Y--f~fisltTIG~G-D~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFY--FSFISLTTIGFG-DIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeee--EEEEEeeeecCC-ccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 78999999 999999999999 9999999988 578888888888887765
No 16
>KOG0501|consensus
Probab=97.28 E-value=0.0004 Score=71.93 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=51.6
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y 85 (275)
.-+..++| |++..||||||| .|.|.|...|+|++.+|+.|-++.|.+.|-++..|...+
T Consensus 422 S~YissLY--fTMt~mttvGFG-NiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~ 480 (971)
T KOG0501|consen 422 SAYISSLY--FTMTCMTTVGFG-NIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMT 480 (971)
T ss_pred ceehhhhh--hhhhhhhccccc-ccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34788999 999999999999 999999999999999999999998888887776665443
No 17
>KOG4404|consensus
Probab=97.27 E-value=0.00019 Score=69.26 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=49.8
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYF 84 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~ 84 (275)
+.++-||| |+.+-+||+||| .-.|.|..||+|.++.+++||..-.+....+...++.+
T Consensus 79 WkF~GaFY--Fa~TVItTIGyG-hstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~ 136 (350)
T KOG4404|consen 79 WKFAGAFY--FATTVITTIGYG-HSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTF 136 (350)
T ss_pred cccCcceE--EEEEEEeeeccC-CCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHH
Confidence 56788999 999999999999 99999999999999999999877777777666655543
No 18
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=96.95 E-value=0.00058 Score=55.10 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=48.9
Q ss_pred eecccccchHHHHHHHhhhhceeeceeecCcceec-----CcchhHHH-HHHHHHHHHHHHhhHHHH
Q psy9066 17 IHIRLTQDLVVEAMWQMWGTNTRTELLFGIHIRPV-----GVWGKIVG-SLCAIAGVLTIALPVPVI 77 (275)
Q Consensus 17 t~g~~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~-----T~~GRI~t-il~il~GI~ifAl~vgvI 77 (275)
...+..+.++..++| |.+.++||.||| |+.|. +..+.++. ++..+.++.++++.+|++
T Consensus 137 ~~~~~~f~~~~~s~~--~~~~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 137 IYGYENFDSFGESLY--WLFQTMTGEGWG-DVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp SSTHHHHSSHHHHHH--HHHHHHTTTTCC-CCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccc--ccccccccCCcc-ccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 345667789999999 999999999999 99998 88999998 566667778889888764
No 19
>KOG3193|consensus
Probab=96.43 E-value=0.0013 Score=67.94 Aligned_cols=37 Identities=8% Similarity=0.029 Sum_probs=31.1
Q ss_pred hHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHH
Q psy9066 25 LVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAI 64 (275)
Q Consensus 25 Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il 64 (275)
.++.++| |.+||++||||| |.+|--++.++..++++-
T Consensus 217 ~lf~s~y--~v~vtfstvgyg-d~~pd~w~sql~~vi~ic 253 (1087)
T KOG3193|consen 217 DLFTSFY--FVMVTFSTVGYG-DWYPDYWASQLCVVILIC 253 (1087)
T ss_pred eeeeeEE--EEEEEEeecccc-ccccccchhhHHHHHHHH
Confidence 4677888 999999999999 999999988887665443
No 20
>KOG0500|consensus
Probab=95.12 E-value=0.038 Score=56.27 Aligned_cols=55 Identities=22% Similarity=0.160 Sum_probs=47.5
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFN 82 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~ 82 (275)
.-+.-+|| |+.-|+||+| - --.|.|..--+|.++=.++|+++||.++|-+.+.++
T Consensus 182 ReY~~S~Y--WStLTlTTiG-e-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVt 236 (536)
T KOG0500|consen 182 REYLYSLY--WSTLTLTTIG-E-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVT 236 (536)
T ss_pred HHHHHHHH--HHhhhhhhcc-C-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHH
Confidence 34777899 9999999998 2 567899999999999999999999999988777543
No 21
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=92.45 E-value=0.2 Score=40.02 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=43.0
Q ss_pred cchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9066 23 QDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNY 83 (275)
Q Consensus 23 f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~ 83 (275)
..++.+++| +++.+++. .-+ +..|.+..+|++.+.+.++.+++.+..++.+++.+..
T Consensus 42 ~~~~~~~~~--~~~~~~~~-q~~-~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 98 (148)
T PF00060_consen 42 RFSLSNSFW--YTFGTLLQ-QGS-SIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTV 98 (148)
T ss_dssp HHHHHHHHH--HCCCCCHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHH--HHHHhhcc-ccc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357889999 88877765 445 8999999999999999999999999999999987764
No 22
>KOG0499|consensus
Probab=83.39 E-value=0.98 Score=47.73 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=42.5
Q ss_pred hHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHH
Q psy9066 25 LVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVI 77 (275)
Q Consensus 25 Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI 77 (275)
.|..+|| |++-|+||+| | --.|.|...-+|-.+--++||++|++++|-+
T Consensus 403 ~YiRCyy--fa~kt~~tiG-~-~P~P~~~~E~Vf~~~~w~mGVFvFslliGQm 451 (815)
T KOG0499|consen 403 EYIRCYY--FAVKTLITIG-G-LPEPQTLFEIVFQLLNWFMGVFVFSLLIGQM 451 (815)
T ss_pred ceeeehh--hHHHHHHHhc-C-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889 9999999999 7 7889998777787777889999999999875
No 23
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=73.43 E-value=3.6 Score=41.30 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=16.6
Q ss_pred hcCCCEEeCCCCCCCCCccccc
Q psy9066 97 QNFNHVTSCPYLPGTLGEWLVD 118 (275)
Q Consensus 97 ~l~nHvIiCGy~~g~lge~I~~ 118 (275)
.++||+++||+ |+.|+.+.+
T Consensus 415 ~~~~hiiI~G~--G~~G~~la~ 434 (558)
T PRK10669 415 DICNHALLVGY--GRVGSLLGE 434 (558)
T ss_pred ccCCCEEEECC--ChHHHHHHH
Confidence 45799999999 788887765
No 24
>KOG1054|consensus
Probab=72.46 E-value=2.1 Score=45.41 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=45.5
Q ss_pred hHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9066 25 LVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFN 82 (275)
Q Consensus 25 Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~ 82 (275)
+++.++| |++..+..-| .||.|++..|||++.+|-++-+++++-.++.+.+.++
T Consensus 595 gifNsLW--FsLgAFMQQG--~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 595 GIFNSLW--FSLGAFMQQG--CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred hhhHHHH--HHHHHHHhcC--CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 6899999 9998876666 4999999999999999999998888777777766443
No 25
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=49.88 E-value=33 Score=26.69 Aligned_cols=33 Identities=3% Similarity=0.014 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q psy9066 56 KIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE 88 (275)
Q Consensus 56 RI~til~il~GI~ifAl~vgvI~s~f~~~y~r~ 88 (275)
|=||++.++.-++++++..+.+...+.....+.
T Consensus 8 rGFTLiElLVvl~Iigil~~~~~p~~~~~~~~~ 40 (149)
T COG2165 8 RGFTLIELLVVLAIIGILAALALPSLQGSIDKA 40 (149)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 457888888888888888888777776655554
No 26
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=48.24 E-value=6.4 Score=31.52 Aligned_cols=45 Identities=11% Similarity=-0.008 Sum_probs=34.8
Q ss_pred hHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHh
Q psy9066 25 LVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIAL 72 (275)
Q Consensus 25 Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl 72 (275)
...++.| |.+.+++++||+ ++.|.+..+.+.....++.+......
T Consensus 117 ~~~~~~~--~~~~~l~~~G~~-~vi~~~~~~~~~~~~~~~~~~~~~~~ 161 (212)
T COG1226 117 ARARDLD--EAVETLTTVGAD-EVVPPTFESALLLARAALVGLGGDSV 161 (212)
T ss_pred EEeccch--HHHHHHHHcCCC-eeecHHHHHHHHHHHHHhcccCCchh
Confidence 4456668 888999999999 99999998888777777765544433
No 27
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=43.32 E-value=25 Score=36.17 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=16.0
Q ss_pred hcCCCEEeCCCCCCCCCccccc
Q psy9066 97 QNFNHVTSCPYLPGTLGEWLVD 118 (275)
Q Consensus 97 ~l~nHvIiCGy~~g~lge~I~~ 118 (275)
..++|+++||| |+.|+.+.+
T Consensus 398 ~~~~~vII~G~--Gr~G~~va~ 417 (601)
T PRK03659 398 DDKPQVIIVGF--GRFGQVIGR 417 (601)
T ss_pred cccCCEEEecC--chHHHHHHH
Confidence 35789999999 788877654
No 28
>KOG4440|consensus
Probab=40.83 E-value=26 Score=37.84 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=41.3
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVS 79 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s 79 (275)
-++-.|+| |+--.+-.-|-| +-.|++...|+++++|+=+.++++|-.++.+.+
T Consensus 612 lnlssAmW--F~WGVLLNSGig-EgtPRSfSARvLGmVWaGFaMIiVASYTANLAA 664 (993)
T KOG4440|consen 612 LNLSSAMW--FSWGVLLNSGIG-EGTPRSFSARVLGMVWAGFAMIIVASYTANLAA 664 (993)
T ss_pred cchhhhHH--HHhHhhhccccC-CCCCcchhHHHHHHHHhhhheeeehhhhhhhhh
Confidence 46789999 655555555666 889999999999999998888887776666654
No 29
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=38.31 E-value=37 Score=35.13 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=16.1
Q ss_pred hcCCCEEeCCCCCCCCCccccc
Q psy9066 97 QNFNHVTSCPYLPGTLGEWLVD 118 (275)
Q Consensus 97 ~l~nHvIiCGy~~g~lge~I~~ 118 (275)
..++|+++||| |+.|+.+.+
T Consensus 398 ~~~~~vII~G~--Gr~G~~va~ 417 (621)
T PRK03562 398 EQQPRVIIAGF--GRFGQIVGR 417 (621)
T ss_pred cccCcEEEEec--ChHHHHHHH
Confidence 34789999999 888887754
No 30
>KOG1052|consensus
Probab=37.73 E-value=30 Score=35.18 Aligned_cols=56 Identities=5% Similarity=0.029 Sum_probs=44.9
Q ss_pred cchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9066 23 QDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFN 82 (275)
Q Consensus 23 f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~ 82 (275)
+.+...++| .++.++..-| + +..|.+..+|++..++.++.+.+++.-++.+++.+.
T Consensus 379 ~~~~~~~~~--~~~~~~~~q~-~-~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt 434 (656)
T KOG1052|consen 379 LFSLLNCLW--LTVGSLLQQG-S-DEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLT 434 (656)
T ss_pred Eeecccchh--hhhHHHhccC-C-CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566778 7777676665 4 788999999999999999999888888888887654
No 31
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=31.78 E-value=1e+02 Score=25.58 Aligned_cols=29 Identities=7% Similarity=0.044 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy9066 58 VGSLCAIAGVLTIALPVPVIVSNFNYFYH 86 (275)
Q Consensus 58 ~til~il~GI~ifAl~vgvI~s~f~~~y~ 86 (275)
|+++.+++-++++++++++++..+.....
T Consensus 3 FTLiEllivlaIigil~~i~~p~~~~~~~ 31 (134)
T TIGR01710 3 FTLLEIMVVLVILGLLAALVAPKLFSQAD 31 (134)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777766666655544433
No 32
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=25.14 E-value=33 Score=28.44 Aligned_cols=14 Identities=14% Similarity=0.282 Sum_probs=12.1
Q ss_pred ccccccccCCCCCC
Q psy9066 147 SQNFNHVTSCPYLP 160 (275)
Q Consensus 147 ~~~f~~~s~~p~l~ 160 (275)
++|||++.+.|+.|
T Consensus 16 G~kFYDLnk~PivC 29 (108)
T PF09538_consen 16 GAKFYDLNKDPIVC 29 (108)
T ss_pred cchhccCCCCCccC
Confidence 68999999999954
No 33
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=23.62 E-value=62 Score=31.32 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=33.1
Q ss_pred chHHHHHHHhhhhceeeceeecC-cceecCcchhHHHHHHHHHHHH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGI-HIRPVGVWGKIVGSLCAIAGVL 68 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~-DI~P~T~~GRI~til~il~GI~ 68 (275)
....++++ +.+++.+|.||.. |+.--++..+++.+++|+.|-.
T Consensus 230 ~~~~~~~f--~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~ 273 (390)
T TIGR00933 230 GALLLSAF--FQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGC 273 (390)
T ss_pred HHHHHHHH--HHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCC
Confidence 45788889 9999999999951 4444567788998888887733
No 34
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=22.92 E-value=1.3e+02 Score=28.43 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=47.4
Q ss_pred ecCcchhHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHhhh-----hHHHhhhcCCCEEeCCCCCCCCCcccccCCCCc
Q psy9066 50 PVGVWGKIVGSLCAI-AGVLTIALPVPVIVSNFNYFYHRETD-----QEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSR 123 (275)
Q Consensus 50 P~T~~GRI~til~il-~GI~ifAl~vgvI~s~f~~~y~r~kr-----~ek~~~~l~nHvIiCGy~~g~lge~I~~~~~s~ 123 (275)
+...+.|++++++-+ .|..+|.+.+..+...+....++..+ .++-...+..|-=- ++ ...+| ..+++
T Consensus 43 ~~~~I~kvL~IliYcVTg~sllsli~VtvaalYsSC~~~pg~~~~f~~de~~~lld~~~d~-~~-ssl~g-----~~SRR 115 (235)
T PF11359_consen 43 RNSEIMKVLAILIYCVTGFSLLSLIVVTVAALYSSCCRRPGRLTRFDDDEAVNLLDDTDDE-GG-SSLFG-----SGSRR 115 (235)
T ss_pred cccHHHHHHhhheeeehhHHHHHHHHHHHHHHHHHHHhCCCcccccChhhhhccccccccc-cc-cccCC-----CCccc
Confidence 345578898886654 78888888776666555544333222 11111112222100 00 01111 12222
Q ss_pred h-----hhhHhhhcccccCCCCchhhhcccc
Q psy9066 124 S-----RKVAAATGLVHNDVGSSWEDMQSQN 149 (275)
Q Consensus 124 ~-----~~ea~a~~Lv~~di~~~~e~~q~~~ 149 (275)
. +-.+.-.||-.+|...+||....+|
T Consensus 116 ~~ipa~~sSs~YQRL~~~D~deeee~~S~~~ 146 (235)
T PF11359_consen 116 GRIPAGCSSSKYQRLENRDYDEEEEEASAAR 146 (235)
T ss_pred ccCCCCccccccccccccccccccccchhhh
Confidence 2 2222556888889998888886655
No 35
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=22.53 E-value=1.6e+02 Score=28.43 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHh
Q psy9066 55 GKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQ 95 (275)
Q Consensus 55 GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~ 95 (275)
.-+++.++++....++++|+|+.++-+...|.++.+-.+..
T Consensus 71 ~Ai~GTl~~~~~~~li~~PiGv~aaIYL~EYa~~~~~t~~i 111 (292)
T COG0581 71 PAIVGTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVI 111 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 46789999999999999999999999988888765555543
No 36
>PHA02669 hypothetical protein; Provisional
Probab=22.51 E-value=2.5e+02 Score=25.82 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=29.7
Q ss_pred ecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCCC
Q psy9066 50 PVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFNH 101 (275)
Q Consensus 50 P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~nH 101 (275)
|.-..+-|+++++.-..++.+.+=++..+...+...+-++.++++..||-|-
T Consensus 3 ~LVii~iIvavi~LTgAaiYlLiEiGLAaERanKrsRvK~nMRkLatQLGnG 54 (210)
T PHA02669 3 ALVLIGIIVAVIYLTGAAIYLLIEIGLAAERANKRSRVKANMRKLATQLGNG 54 (210)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC
Confidence 3334556666666555555555556666666665555556666666665543
No 37
>TIGR01711 gspJ general secretion pathway protein J. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=21.71 E-value=2.1e+02 Score=25.21 Aligned_cols=26 Identities=8% Similarity=-0.097 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9066 58 VGSLCAIAGVLTIALPVPVIVSNFNY 83 (275)
Q Consensus 58 ~til~il~GI~ifAl~vgvI~s~f~~ 83 (275)
||.+.++..++++|+........+..
T Consensus 3 FTLiEllval~I~ail~~~~~~~~~~ 28 (192)
T TIGR01711 3 FTLLELLVAIAIFASLSLGAYQVLDS 28 (192)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777766655555543
No 38
>PRK10506 hypothetical protein; Provisional
Probab=21.38 E-value=2e+02 Score=24.63 Aligned_cols=32 Identities=3% Similarity=-0.005 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy9066 56 KIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87 (275)
Q Consensus 56 RI~til~il~GI~ifAl~vgvI~s~f~~~y~r 87 (275)
|=|+++.++..++++++++++.+..|.....+
T Consensus 9 ~GFTLiEllvvl~Ii~il~~~a~p~~~~~~~~ 40 (162)
T PRK10506 9 RGYTLIELLVVMTIVSILSAWGLYGWQRWQQR 40 (162)
T ss_pred CCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777877777777777766666554433
No 39
>TIGR01707 gspI general secretion pathway protein I. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=20.95 E-value=2.5e+02 Score=22.66 Aligned_cols=28 Identities=11% Similarity=0.036 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9066 58 VGSLCAIAGVLTIALPVPVIVSNFNYFY 85 (275)
Q Consensus 58 ~til~il~GI~ifAl~vgvI~s~f~~~y 85 (275)
|+.+.++..+++|++....+...+....
T Consensus 2 FTLiEvlvAlaI~ai~~~~~~~~~~~~~ 29 (101)
T TIGR01707 2 FTLLEVLVALAIFAAAALALISSVGGQT 29 (101)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777776666665554443
No 40
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.53 E-value=85 Score=25.90 Aligned_cols=10 Identities=0% Similarity=-0.130 Sum_probs=4.1
Q ss_pred hhcCCCEEeC
Q psy9066 96 SQNFNHVTSC 105 (275)
Q Consensus 96 ~~l~nHvIiC 105 (275)
.-+..|--..
T Consensus 32 ~P~~gt~w~~ 41 (130)
T PF12273_consen 32 QPIYGTRWMA 41 (130)
T ss_pred CCcCCceecC
Confidence 3344453333
No 41
>PF14163 SieB: Superinfection exclusion protein B
Probab=20.07 E-value=2.6e+02 Score=23.46 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhH
Q psy9066 55 GKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQE 92 (275)
Q Consensus 55 GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~e 92 (275)
+-.++.++.++-..+++..+..+...+...+.++++++
T Consensus 33 ~~~i~~~fl~s~s~li~~~~~~~~~~~~~~~~~k~~~~ 70 (151)
T PF14163_consen 33 QPWIGLIFLFSVSYLIAQLLSFIYKEAKDRYQRKRKKK 70 (151)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333344444444443333344433333
Done!