Query psy9066
Match_columns 275
No_of_seqs 223 out of 1191
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 18:01:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xl4_A Inward rectifier potass 99.8 1.6E-22 5.5E-27 185.8 -1.6 154 21-187 78-239 (301)
2 1p7b_A Integral membrane chann 99.8 9.3E-22 3.2E-26 183.6 3.4 153 22-187 93-253 (333)
3 2qks_A KIR3.1-prokaryotic KIR 99.8 3.7E-21 1.3E-25 178.5 1.7 154 25-187 78-242 (321)
4 2r9r_B Paddle chimera voltage 99.8 4.7E-20 1.6E-24 179.0 5.6 145 20-223 370-514 (514)
5 3sya_A G protein-activated inw 99.7 2.1E-18 7.1E-23 162.1 2.8 157 23-187 89-257 (340)
6 3spc_A Inward-rectifier K+ cha 99.7 4.5E-18 1.5E-22 160.0 0.9 157 23-187 92-260 (343)
7 4h33_A LMO2059 protein; bilaye 99.6 4.7E-16 1.6E-20 127.5 1.5 61 20-83 38-98 (137)
8 2a9h_A Voltage-gated potassium 99.5 1.9E-15 6.5E-20 127.1 3.1 62 21-85 80-141 (155)
9 2ih3_C Voltage-gated potassium 99.5 7.8E-15 2.7E-19 118.0 5.8 62 21-85 57-118 (122)
10 4gx0_A TRKA domain protein; me 99.5 2.2E-15 7.5E-20 144.2 2.5 90 24-118 50-144 (565)
11 2k1e_A Water soluble analogue 99.5 2.5E-15 8.4E-20 117.3 1.3 61 22-85 37-97 (103)
12 3eff_K Voltage-gated potassium 99.5 1.2E-14 4E-19 118.0 4.6 64 21-87 36-99 (139)
13 1lnq_A MTHK channels, potassiu 99.5 4.6E-16 1.6E-20 139.6 -6.9 88 24-118 44-132 (336)
14 2q67_A Potassium channel prote 99.4 1E-13 3.5E-18 110.7 3.5 56 24-82 48-103 (114)
15 3ldc_A Calcium-gated potassium 99.4 3.6E-13 1.2E-17 101.7 4.7 55 24-81 27-81 (82)
16 3vou_A ION transport 2 domain 99.4 2.8E-13 9.5E-18 111.4 4.3 53 24-79 51-103 (148)
17 1orq_C Potassium channel; volt 99.3 4.3E-13 1.5E-17 114.3 4.8 60 21-83 161-220 (223)
18 3ouf_A Potassium channel prote 99.3 5.7E-13 1.9E-17 103.6 4.8 56 24-82 31-86 (97)
19 3beh_A MLL3241 protein; transm 99.3 7.7E-13 2.6E-17 119.5 6.3 64 22-88 158-221 (355)
20 3pjs_K KCSA, voltage-gated pot 99.3 3.5E-14 1.2E-18 119.2 -3.5 59 22-83 64-122 (166)
21 3um7_A Potassium channel subfa 99.2 9.5E-12 3.3E-16 115.6 6.5 64 22-88 112-175 (309)
22 3um7_A Potassium channel subfa 99.1 1.8E-11 6.2E-16 113.7 1.9 73 24-102 223-301 (309)
23 3ukm_A Potassium channel subfa 99.1 6.7E-11 2.3E-15 108.7 4.8 63 20-85 88-150 (280)
24 3ukm_A Potassium channel subfa 99.0 4.4E-11 1.5E-15 109.8 1.9 56 24-82 200-262 (280)
25 3rvy_A ION transport protein; 98.6 9.7E-09 3.3E-13 90.6 2.3 69 21-91 176-249 (285)
26 3agw_A KIR3.2, G protein-activ 96.1 0.00095 3.2E-08 58.9 -0.2 88 98-187 34-133 (208)
27 1n9p_A GIRK1, G protein-activa 96.0 0.00064 2.2E-08 60.0 -1.7 89 98-187 32-131 (207)
28 2gix_A Inward rectifier potass 95.6 0.00084 2.9E-08 59.2 -2.3 89 98-187 32-131 (208)
29 4dxw_A Navrh, ION transport pr 95.3 0.0065 2.2E-07 51.7 2.1 60 21-83 161-225 (229)
30 1u4f_A Inward rectifier potass 94.3 0.004 1.4E-07 57.3 -1.9 89 98-187 37-136 (270)
31 2xky_I Inward rectifier potass 93.8 0.011 3.9E-07 55.3 0.0 89 98-187 76-175 (309)
32 3kg2_A Glutamate receptor 2; I 93.6 0.079 2.7E-06 51.7 5.5 56 24-83 562-617 (823)
33 3naf_A Calcium-activated potas 77.1 0.26 9E-06 51.1 -1.9 45 61-107 17-61 (798)
34 4f4l_A ION transport protein; 57.5 1.6 5.6E-05 34.1 -0.7 61 21-84 34-100 (112)
35 3sok_A Fimbrial protein; pilus 22.0 1.2E+02 0.004 24.3 4.7 30 59-88 2-31 (151)
36 1oqw_A Fimbrial protein; type 22.0 1.2E+02 0.0041 23.8 4.7 28 60-87 3-30 (144)
No 1
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.83 E-value=1.6e-22 Score=185.81 Aligned_cols=154 Identities=14% Similarity=0.179 Sum_probs=120.6
Q ss_pred cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCC
Q psy9066 21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFN 100 (275)
Q Consensus 21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~n 100 (275)
..+.+++|||| |+++|+|||||| |++|.|+.||++++++++.|++++|++++.+++.|.+. + ++ .+..+
T Consensus 78 ~~~~s~~~a~y--fs~vT~tTvGYG-Di~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~---~---~r--~~fs~ 146 (301)
T 1xl4_A 78 ARPGSFTDAFF--FSVQTMATIGYG-KLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP---T---AG--VLFSS 146 (301)
T ss_dssp SCTTCHHHHHH--HHHHHHTTCCCS-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---C---CC--EEECS
T ss_pred CCcCCHHHHHH--HhhhheeccCCC-CCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---H---hh--hccCC
Confidence 34689999999 999999999999 99999999999999999999999999999998877531 1 11 45789
Q ss_pred CEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc----cCCCC--CCCcc-cccccCCCC
Q psy9066 101 HVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV----TSCPY--LPGTL-GQHMKKSSL 172 (275)
Q Consensus 101 HvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~----s~~p~--l~~~~-~~~~~~s~~ 172 (275)
|.++||+++..+-.....+.+.+...++ ....|....+..|+|.+ ++++++ +..|. +||++ |.|+++||+
T Consensus 147 ~~vI~~~~g~~~l~~R~~n~r~~~li~a~vr~~l~~~~~t~eGe~~--~~~~~L~l~~~~~~~l~~p~~v~H~Id~~SPL 224 (301)
T 1xl4_A 147 RMVISDFEGKPTLMMRLANLRIEQIIEADVHLVLVRSEISQEGMVF--RRFHDLTLTRSRSPIFSLSWTVMHPIDHHSPI 224 (301)
T ss_dssp CEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEEEEEECTTSCEE--EEEEECCCSCCEEEEECSEEEEEEECCTTCTT
T ss_pred eEEEecCCCcceeeeeccccccceEEccEEEEEEEEeeEcCCCcEE--EEEeccccccCCeEEEEeeEEEEEecCCCCCc
Confidence 9999999854444444444334345555 44456666777777776 777765 55676 77888 999999999
Q ss_pred CCCcchhhhhhhccc
Q psy9066 173 SESSSDMMELEEGLL 187 (275)
Q Consensus 173 ~~~~~~~~e~~e~~~ 187 (275)
.+-+.|.|+.++.|+
T Consensus 225 ~~~s~~~L~~~~~ei 239 (301)
T 1xl4_A 225 YGETDETLRNSHSEF 239 (301)
T ss_dssp TTCCHHHHHHHTCEE
T ss_pred ccCCHhHHhcCCeEE
Confidence 999999888877654
No 2
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.83 E-value=9.3e-22 Score=183.64 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=114.1
Q ss_pred ccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCCC
Q psy9066 22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFNH 101 (275)
Q Consensus 22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~nH 101 (275)
.+.++.+||| |+++|+|||||| |++|.|..||++++++++.|+++++++++.+++.|.+.. ++ .+..+|
T Consensus 93 ~~~s~~~a~y--fs~vT~tTVGYG-Di~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~---~r-----~~fs~~ 161 (333)
T 1p7b_A 93 SPPGFVGAFF--FSVETLATVGYG-DMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR---AK-----IMFARH 161 (333)
T ss_dssp SSSSTHHHHH--HHTTTTTTCCCS-CCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CC-----CEECSC
T ss_pred CCCcHHHhHh--hhheeeeecCCC-CCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-----HHhCCC
Confidence 3568999999 999999999999 999999999999999999999999999999998776321 11 346899
Q ss_pred EEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc----cCCCC--CCCcc-cccccCCCCC
Q psy9066 102 VTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV----TSCPY--LPGTL-GQHMKKSSLS 173 (275)
Q Consensus 102 vIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~----s~~p~--l~~~~-~~~~~~s~~~ 173 (275)
.++||++...+......+.+.....++ ....|.......|+|- .++|+++ +.+|. +||++ |.|+++||+.
T Consensus 162 ~VI~~~~g~~~L~fRv~n~r~~~li~a~vr~~li~~~~t~eGe~--~~~~~~l~l~~~~~~~l~~~~tv~H~Id~~SPL~ 239 (333)
T 1p7b_A 162 AIVRPFNGRMTLMVRAANARQNVIAEARAKMRLMRREHSSEGYS--LMKIHDLKLVRNEHPIFLLGWNMMHVIDESSPLF 239 (333)
T ss_dssp EEEEECSSSEEEEEEEECCSSCCCCEEEEEEECC------------CCEECCSGGGTTCSCCCCSSEEEEEECSTTSTTS
T ss_pred EEEcCCCCcceEEEEecccccceEEeeEEEEEEEeeeecCCCcE--EeeeeecccccCCCeeEeeeEEEEEeCCCCCCcc
Confidence 999999865555555555444444445 4555666666775554 4667766 67788 68988 9999999999
Q ss_pred CCcchhhhhhhccc
Q psy9066 174 ESSSDMMELEEGLL 187 (275)
Q Consensus 174 ~~~~~~~e~~e~~~ 187 (275)
+-+.|.|+.++.|+
T Consensus 240 ~~s~~~L~~~~~ei 253 (333)
T 1p7b_A 240 GETPESLAEGRAML 253 (333)
T ss_dssp SCCHHHHHHTTCEE
T ss_pred ccCHhHHhcCCEEE
Confidence 98888888777654
No 3
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.80 E-value=3.7e-21 Score=178.48 Aligned_cols=154 Identities=16% Similarity=0.083 Sum_probs=117.7
Q ss_pred hHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCCCEEe
Q psy9066 25 LVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFNHVTS 104 (275)
Q Consensus 25 Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~nHvIi 104 (275)
++++||| |+++|||||||| |++|.|..||++++++++.|++++|++++.+++.|.+..+ +.+ .....+|.++
T Consensus 78 s~~~a~y--~s~vT~tTVGYG-Di~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~---r~~--~i~fS~~avI 149 (321)
T 2qks_A 78 GFGGAFF--FSVETLATVGYG-DMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK---RAE--TLMFSEHAVI 149 (321)
T ss_dssp THHHHHH--HHHHHHTTCCCC-SSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC---GGG--TEEECSCEEE
T ss_pred chhheee--eeeEEeccccCC-CcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhh--hhhcCCceEE
Confidence 9999999 999999999999 9999999999999999999999999999999988764322 111 2346889999
Q ss_pred CCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc-------cCCCC--CCCcc-cccccCCCCC
Q psy9066 105 CPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV-------TSCPY--LPGTL-GQHMKKSSLS 173 (275)
Q Consensus 105 CGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~-------s~~p~--l~~~~-~~~~~~s~~~ 173 (275)
|+++...+-+....+.++....++ ....|.++....|+|-+.. ...++ +..|. +||++ |.|+++||+.
T Consensus 150 ~~~~g~~~L~fRv~n~r~~~li~a~vr~~l~~~~~t~eGe~~~~-~~~~l~l~~d~~~~~~~l~~p~tv~H~Id~~SPL~ 228 (321)
T 2qks_A 150 SMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPL-DQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFY 228 (321)
T ss_dssp EEETTEEEEEEEEEECSCCCEEEEEEEEEEEEEEECTTCCEEEE-EEEEECSSTTTTTTBCCCSSCEEEEEECSTTSTTT
T ss_pred ecCCCceEEEEEecccccCeeeeeEEEEEEEEEEecCCCcEEEe-EEeeeecccCCCCCceEEEccEEEEEECCCCCCcc
Confidence 999865555555555444445555 4445777777887777652 22222 55677 67888 9999999999
Q ss_pred CCcchhhhhhhccc
Q psy9066 174 ESSSDMMELEEGLL 187 (275)
Q Consensus 174 ~~~~~~~e~~e~~~ 187 (275)
+-+.|.|+.++.|+
T Consensus 229 ~~~~~~L~~~~~ei 242 (321)
T 2qks_A 229 DLSQRSMQTEQFEV 242 (321)
T ss_dssp TCCHHHHTTCCCEE
T ss_pred ccCHhHHhcCCeEE
Confidence 98888887766543
No 4
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.79 E-value=4.7e-20 Score=178.97 Aligned_cols=145 Identities=43% Similarity=0.649 Sum_probs=62.7
Q ss_pred ccccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcC
Q psy9066 20 RLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNF 99 (275)
Q Consensus 20 ~~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~ 99 (275)
...|.++++|+| |+++|||||||| |++|.|..||++++++++.|+++++++++++++.|...++++++++ .++++
T Consensus 370 ~~~F~s~~~a~y--~~~vT~TTvGYG-Di~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~~~--~~~l~ 444 (514)
T 2r9r_B 370 DSQFPSIPDAFW--WAVVSMTTVGYG-DMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGE--EQAQY 444 (514)
T ss_dssp TCSCSSHHHHHH--HHHHHHTTCCCS-SSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC----------
T ss_pred Cccccchhhhhh--eeeeEEEecccC-CCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhh
Confidence 345689999999 999999999999 9999999999999999999999999999999999999888665433 36679
Q ss_pred CCEEeCCCCCCCCCcccccCCCCchhhhHhhhcccccCCCCchhhhcccccccccCCCCCCCcccccccCCCCCCCcchh
Q psy9066 100 NHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDMQSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDM 179 (275)
Q Consensus 100 nHvIiCGy~~g~lge~I~~~~~s~~~~ea~a~~Lv~~di~~~~e~~q~~~f~~~s~~p~l~~~~~~~~~~s~~~~~~~~~ 179 (275)
+|+++|||++. +..+..++++.+.+++|.
T Consensus 445 ~h~iicg~~~~---------------------------------------------------~~~l~~~~~~~~~~~s~~ 473 (514)
T 2r9r_B 445 LQVTSSPKIPS---------------------------------------------------SPDLKKSRSASTISKSDY 473 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEeCCCcc---------------------------------------------------chhHHhcccCCCcccccc
Confidence 99999999532 112234567778899999
Q ss_pred hhhhhccccCCCcccchhhhhhcccCCCCCCCCCCCcccccchh
Q psy9066 180 MELEEGLLFGRDYSTSLTNKKLLSNNNLSLCNPKHNIMSIETDW 223 (275)
Q Consensus 180 ~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (275)
+|+||+.-.+.+.... .....+|....+|++ .+..+++|||
T Consensus 474 ~el~e~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~ 514 (514)
T 2r9r_B 474 MEIQEGVNNSNEDFRE--ENLKTANSTLANTNY-VNITKMLTDV 514 (514)
T ss_dssp --------------------------------------------
T ss_pred cccccccccccccccc--cccccCCccccccCc-cccccccccC
Confidence 9999987654442211 111111222222221 2568899996
No 5
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.70 E-value=2.1e-18 Score=162.06 Aligned_cols=157 Identities=15% Similarity=0.022 Sum_probs=118.7
Q ss_pred cchHHHHHHHhhhhceeeceeecCcceec--CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCC
Q psy9066 23 QDLVVEAMWQMWGTNTRTELLFGIHIRPV--GVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFN 100 (275)
Q Consensus 23 f~Si~DAfW~ywavVTmTTVGYG~DI~P~--T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~n 100 (275)
+.++++||| |+++|+|||||| |++|. ++.|++++.+.++.|++++|+++|++++.+++..+|. +. -...+
T Consensus 89 ~~sf~~af~--fSv~T~TTvGYG-d~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ra---~t--i~FS~ 160 (340)
T 3sya_A 89 LNGFVSAFL--FSIETETTIGYG-YRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRA---ET--LVFST 160 (340)
T ss_dssp CCSTTHHHH--HHHHHHSCCCCS-SSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGG---GG--EEECS
T ss_pred ccCHHHHHh--hhheeeeeecCC-CccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcC---ce--EEecc
Confidence 578999999 999999999999 99997 7889999999999999999999999998877532221 11 23578
Q ss_pred CEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccc-----cccccCCC-C--CCCcc-cccccCC
Q psy9066 101 HVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQN-----FNHVTSCP-Y--LPGTL-GQHMKKS 170 (275)
Q Consensus 101 HvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~-----f~~~s~~p-~--l~~~~-~~~~~~s 170 (275)
|.++|+.+...+-+....+.+.+...++ ....|.+.....|+|-+.... ..|.+..| . +||++ |.|+++|
T Consensus 161 ~AVI~~~dG~~~LmfRv~n~R~~~liea~vr~~l~~~~~t~eGe~~~l~~~~l~~~~d~~~~~~fl~~p~tv~H~Ide~S 240 (340)
T 3sya_A 161 HAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQS 240 (340)
T ss_dssp CEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEECCEECTTSCEETTCEEEECSSTTTTTTSCCCSSCEEEEEECCTTS
T ss_pred eEEEeccCCeEEEEEEEecCCCCeEEEEEEEEEEEEEEecCCCceEeeEEeeeceeccCCCCcceeeccEEEEEECCCCC
Confidence 9999999866666666666555555666 455677777777777653211 12333334 4 57888 9999999
Q ss_pred CCCCCcchhhhhhhccc
Q psy9066 171 SLSESSSDMMELEEGLL 187 (275)
Q Consensus 171 ~~~~~~~~~~e~~e~~~ 187 (275)
|+.+-+.|.|+.++.|+
T Consensus 241 PL~~~t~~~L~~~~~Ei 257 (340)
T 3sya_A 241 PFWEISKAQLPKEELEI 257 (340)
T ss_dssp TTTTCCTTTGGGCCCEE
T ss_pred CccccChhHHhhCCeEE
Confidence 99998888888777654
No 6
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=99.67 E-value=4.5e-18 Score=159.98 Aligned_cols=157 Identities=13% Similarity=0.031 Sum_probs=118.7
Q ss_pred cchHHHHHHHhhhhceeeceeecCcceec--CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCC
Q psy9066 23 QDLVVEAMWQMWGTNTRTELLFGIHIRPV--GVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFN 100 (275)
Q Consensus 23 f~Si~DAfW~ywavVTmTTVGYG~DI~P~--T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~n 100 (275)
+.++++||| |+++|+|||||| |++|. ++.|++++.+.++.|++++|+++|++++.|++..+ +.+. -...+
T Consensus 92 ~~sf~~af~--fSv~T~TTvGYG-d~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~---r~~t--i~FS~ 163 (343)
T 3spc_A 92 VNGFVAAFL--FSIETQTTIGYG-FRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKK---RAQT--LLFSH 163 (343)
T ss_dssp CCSHHHHHH--HHHHHHSCCCCS-SSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC---CCCC--EEECS
T ss_pred cCCHHHHhh--eeeeeeEeecCC-CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh---hcCc--EEecc
Confidence 579999999 999999999999 99974 89999999999999999999999999988764211 1111 22468
Q ss_pred CEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccc-----cccccCC-CC--CCCcc-cccccCC
Q psy9066 101 HVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQN-----FNHVTSC-PY--LPGTL-GQHMKKS 170 (275)
Q Consensus 101 HvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~-----f~~~s~~-p~--l~~~~-~~~~~~s 170 (275)
|.++|+.+...+-++...+-+++...|+ ....|.++....|+|-+.... .+|.+.. +. +||++ |.|+++|
T Consensus 164 ~AVI~~~dG~~~LmfRv~n~R~~~liea~vr~~l~r~~~t~eGe~~~l~~~~l~~~~d~~~~~~fl~~p~tv~H~IDe~S 243 (343)
T 3spc_A 164 NAVVAMRDGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEINEDS 243 (343)
T ss_dssp CEEEEEETTEEEEEEEEEESSSSCEEEEEEEEEEEEEEECTTSCEEEEEEEEECSSGGGTTTBCCCSSCEEEEEECCTTS
T ss_pred ceEEecCCCcEEEEEEEecCCCCeEEEEEEEEEEEEEEEcCCCcEEeeEEEEeeecccCCCCcceeeccEEEEEeCCCCC
Confidence 8999999755566655555555555666 555677777888887764322 1223333 44 57888 9999999
Q ss_pred CCCCCcchhhhhhhccc
Q psy9066 171 SLSESSSDMMELEEGLL 187 (275)
Q Consensus 171 ~~~~~~~~~~e~~e~~~ 187 (275)
|+.+-+.|.|+.++.|+
T Consensus 244 PL~~~t~~~L~~~~~Ei 260 (343)
T 3spc_A 244 PLFGISRQDLETDDFEI 260 (343)
T ss_dssp TTTTCCHHHHTTCCCEE
T ss_pred CcccCCHHHHhhCCeEE
Confidence 99999999888877665
No 7
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.56 E-value=4.7e-16 Score=127.52 Aligned_cols=61 Identities=26% Similarity=0.482 Sum_probs=56.1
Q ss_pred ccccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9066 20 RLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNY 83 (275)
Q Consensus 20 ~~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~ 83 (275)
+.++++++||+| |+++|+|||||| |++|.|..||++++++++.|+++++++++.+++.+..
T Consensus 38 e~~~~~~~~a~y--~~~~T~tTvGyG-Di~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~ 98 (137)
T 4h33_A 38 EPEINNYPDALW--WAIVTATTVGYG-DIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRC 98 (137)
T ss_dssp CSSCCSHHHHHH--HHHHHHTTCCCS-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HcCCCCHHHHHH--HHHHHHHcccCC-CCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999 999999999999 9999999999999999999999999999998876643
No 8
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.53 E-value=1.9e-15 Score=127.13 Aligned_cols=62 Identities=24% Similarity=0.503 Sum_probs=57.4
Q ss_pred cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9066 21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85 (275)
Q Consensus 21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y 85 (275)
..+.+++||+| |+++|+|||||| |++|.|..||++++++++.|+++++++++.+++.+.+..
T Consensus 80 ~~~~s~~~a~y--~s~vTltTVGYG-Di~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~ 141 (155)
T 2a9h_A 80 AALISYPDALW--WSVETATTVGYG-DLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGRE 141 (155)
T ss_dssp SSTTSHHHHHH--HHHHHHTTCCCS-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CccCcccceeh--eeeeeeecccCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999 999999999999 999999999999999999999999999999998887543
No 9
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.52 E-value=7.8e-15 Score=117.97 Aligned_cols=62 Identities=24% Similarity=0.535 Sum_probs=57.4
Q ss_pred cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9066 21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85 (275)
Q Consensus 21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y 85 (275)
..+.++.||+| |+++|+|||||| |++|.|..||++++++++.|+++++++++.+++.+.+..
T Consensus 57 ~~~~~~~~a~y--~~~~T~tTvGyG-Di~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 57 AQLITYPRALW--WACETATTVAYG-DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp CCCCSHHHHHH--HHHHHHTTCCCS-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCccccchh--heeeeeeeeecC-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45589999999 999999999999 999999999999999999999999999999998887643
No 10
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.52 E-value=2.2e-15 Score=144.21 Aligned_cols=90 Identities=19% Similarity=0.296 Sum_probs=71.6
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHH-HHHHHHHHH----HHhhhhHHHhhhc
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPV-IVSNFNYFY----HRETDQEDMQSQN 98 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgv-I~s~f~~~y----~r~kr~ek~~~~l 98 (275)
.+++|||| |+++|+|||||| |++|.|..||+++++++++|+++++++++. +++.+...+ .+.+++++....+
T Consensus 50 ~~~~~~~y--~~~~t~tTvGyg-d~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (565)
T 4gx0_A 50 YSFMAGIY--WTITVMTTLGFG-DITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT 126 (565)
T ss_dssp CCHHHHHH--HHHHHHTTCCCC-SSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC
T ss_pred Cchhhhhh--eeeeeeeeecCC-CcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 58999999 999999999999 999999999999999999999999999987 444443322 2223333334667
Q ss_pred CCCEEeCCCCCCCCCccccc
Q psy9066 99 FNHVTSCPYLPGTLGEWLVD 118 (275)
Q Consensus 99 ~nHvIiCGy~~g~lge~I~~ 118 (275)
++|+++||+ |+.|+.+.+
T Consensus 127 ~~hviI~G~--g~~g~~la~ 144 (565)
T 4gx0_A 127 RGHILIFGI--DPITRTLIR 144 (565)
T ss_dssp CSCEEEESC--CHHHHHHHH
T ss_pred CCeEEEECC--ChHHHHHHH
Confidence 999999999 666666654
No 11
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.50 E-value=2.5e-15 Score=117.33 Aligned_cols=61 Identities=25% Similarity=0.366 Sum_probs=56.0
Q ss_pred ccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9066 22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85 (275)
Q Consensus 22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y 85 (275)
.+.++.||+| |+++|+|||||| |++|.|..||++++++++.|+++++++++.+.+.+.+..
T Consensus 37 ~~~~~~~a~y--~~~~T~tTvGyG-Di~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 97 (103)
T 2k1e_A 37 ALISYPDAIW--WSVETATTVGYG-DRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRRE 97 (103)
T ss_dssp CCCCGGGTTT--TTTGGGGCCSCC-SSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHH
T ss_pred ccccHHHHHH--HHHHHHhcccCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468999999 999999999999 999999999999999999999999999999988776543
No 12
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.49 E-value=1.2e-14 Score=118.04 Aligned_cols=64 Identities=23% Similarity=0.512 Sum_probs=58.3
Q ss_pred cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy9066 21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87 (275)
Q Consensus 21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r 87 (275)
..+.+++||+| |+++|+|||||| |++|.|..||+++++++++|+++++++++.+.+.+.+..++
T Consensus 36 ~~~~~~~~a~y--f~~~T~tTvGyG-d~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~ 99 (139)
T 3eff_K 36 AQLITYPRALW--WSVETATTVGYG-DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 99 (139)
T ss_dssp CCCCCHHHHHH--HHHHHHTTCCCS-SSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred cccCCHHHHHH--HHheeeecccCC-CCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588999999 999999999999 99999999999999999999999999999999877665544
No 13
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.46 E-value=4.6e-16 Score=139.58 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=66.3
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh-hhhHHHhhhcCCCE
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE-TDQEDMQSQNFNHV 102 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~-kr~ek~~~~l~nHv 102 (275)
.+++||+| |+++|+|||||| |++|.|..||++++++++.|+++++++++.+++.+.....++ .+.+++. + ++|+
T Consensus 44 ~~~~~a~y--~~~~t~tTvGyG-d~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v 118 (336)
T 1lnq_A 44 ESWTVSLY--WTFVTIATVGYG-DYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLIDVA-K-SRHV 118 (336)
T ss_dssp CCSSTTHH--HHHHHHTTCCCS-SCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEE
T ss_pred CCHHHHHH--HHHHHhhcccCC-CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-c-cCCE
Confidence 68899999 999999999999 999999999999999999999999999999988776644332 2222222 2 6899
Q ss_pred EeCCCCCCCCCccccc
Q psy9066 103 TSCPYLPGTLGEWLVD 118 (275)
Q Consensus 103 IiCGy~~g~lge~I~~ 118 (275)
++||+ |+.|+.+.+
T Consensus 119 iI~G~--G~~g~~l~~ 132 (336)
T 1lnq_A 119 VICGW--SESTLECLR 132 (336)
T ss_dssp EEESC--CHHHHHHHT
T ss_pred EEECC--cHHHHHHHH
Confidence 99999 677766554
No 14
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.40 E-value=1e-13 Score=110.68 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=53.1
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFN 82 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~ 82 (275)
.++.||+| |+++|+|||||| |++|.|..||++++++++.|+.++++.++.+.+.+.
T Consensus 48 ~~~~~a~y--~~~~T~tTvGyG-di~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~ 103 (114)
T 2q67_A 48 LRPIDALY--FSVVTLTTVGAG-NFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 103 (114)
T ss_dssp CCHHHHHH--HHHHHHTSCCCS-SCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHH--HHHHHhcceeCC-CCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999 999999999999 999999999999999999999999999999887763
No 15
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.37 E-value=3.6e-13 Score=101.71 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=52.1
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNF 81 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f 81 (275)
.++.||+| |+++|+|||||| |++|.|..||++++++++.|+.++++.++.+.+.+
T Consensus 27 ~~~~~a~y--f~~~T~tTvGyG-di~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 27 ESWTVSLY--WTFVTIATVGYG-DYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CCHHHHHH--HHHHHHTTCCCC-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHH--HHHHHhcccCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999 999999999999 99999999999999999999999999999887654
No 16
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.36 E-value=2.8e-13 Score=111.36 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=51.1
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVS 79 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s 79 (275)
.++.||+| |+++|+|||||| |++|.|..||++++++++.|++++++.++.+.+
T Consensus 51 ~~~~~a~y--~~~~t~tTvGyG-d~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~ 103 (148)
T 3vou_A 51 LRPLDALY--FSVVTLTTVGDG-NFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAV 103 (148)
T ss_dssp CCHHHHHH--HHHHHHTTCCCS-SCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHH--HHHHHHHccCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999 999999999999 999999999999999999999999999998876
No 17
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.35 E-value=4.3e-13 Score=114.35 Aligned_cols=60 Identities=23% Similarity=0.531 Sum_probs=56.1
Q ss_pred cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9066 21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNY 83 (275)
Q Consensus 21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~ 83 (275)
..+.+++||+| |+++|||||||| |++|.|+.||++++++++.|+++++++++.+++.+.+
T Consensus 161 ~~~~~~~~s~y--~~~~t~tTvGyG-di~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 161 SSIKSVFDALW--WAVVTATTVGYG-DVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp CSCCSHHHHHH--HHHHHHTTCCCC-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCcchhHHH--hHHhHHhccCCC-CCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34579999999 999999999999 9999999999999999999999999999999987764
No 18
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.34 E-value=5.7e-13 Score=103.63 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=52.9
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFN 82 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~ 82 (275)
.++.||+| |+++|+|||||| |++|.|..||++++++++.|+.++++.++.+.+.+.
T Consensus 31 ~~~~~a~y--f~~~T~tTvGyG-di~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 31 LRPIDALY--FSVVTLTTVGYG-DFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 86 (97)
T ss_dssp CCHHHHHH--HHHHHHTTCCCC-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCHHHHHH--HHHHHHHccCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999 999999999999 999999999999999999999999999998887654
No 19
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.34 E-value=7.7e-13 Score=119.49 Aligned_cols=64 Identities=19% Similarity=0.375 Sum_probs=59.0
Q ss_pred ccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q psy9066 22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE 88 (275)
Q Consensus 22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~ 88 (275)
.|.++++|+| |+++|||||||| |++|.|..||++++++++.|+++++++++.+++.+.+..+++
T Consensus 158 ~f~~~~~s~y--~~~~t~ttvGyg-d~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 221 (355)
T 3beh_A 158 KFGSIPQAMW--WAVVTLSTTGYG-DTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRG 221 (355)
T ss_dssp HHSSHHHHHH--HHHHHHTTCCCS-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHH--HHHhheeecCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999 999999999999 999999999999999999999999999999999888765544
No 20
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.32 E-value=3.5e-14 Score=119.16 Aligned_cols=59 Identities=25% Similarity=0.586 Sum_probs=54.7
Q ss_pred ccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9066 22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNY 83 (275)
Q Consensus 22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~ 83 (275)
.+.+++||+| |+++|+|||||| |++|.|..||+++++++++|+++++++++.+++.+..
T Consensus 64 ~~~~~~~a~y--f~~~T~tTvGyG-Di~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 64 QLITYPRALW--WSVETATTVGYG-DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp CCCSTTTTTT--TTHHHHSCCCCS-SSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred ccCCHHHHHH--HHHHHhccccCC-CCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999 999999999999 9999999999999999999999999999998876653
No 21
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.22 E-value=9.5e-12 Score=115.56 Aligned_cols=64 Identities=9% Similarity=0.127 Sum_probs=58.8
Q ss_pred ccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q psy9066 22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE 88 (275)
Q Consensus 22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~ 88 (275)
.-++++||+| |+++|+|||||| |++|.|..||+++++++++||.+++++++.+.+.+...+++.
T Consensus 112 ~~w~~~~a~y--f~~~t~tTvGYG-di~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~ 175 (309)
T 3um7_A 112 SAWDLGSAFF--FSGTIITTIGYG-NVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHG 175 (309)
T ss_dssp -CCSHHHHHH--HHHHHHTSCCCC-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhhhH--hhheeeeecccC-CCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3478999999 999999999999 999999999999999999999999999999999888776553
No 22
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.09 E-value=1.8e-11 Score=113.71 Aligned_cols=73 Identities=15% Similarity=0.004 Sum_probs=53.9
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhh
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKI------VGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQ 97 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI------~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~ 97 (275)
.++.||+| |+++|+|||||| |++|.|..||. ++++++++|+++++++++.+.+.+....+| ++ + ...+
T Consensus 223 ~~~~da~y--~~~vTltTvGyG-d~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r-~~-~-~~~~ 296 (309)
T 3um7_A 223 WSKLEAIY--FVIVTLTTVGFG-DYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRR-TR-A-EMGG 296 (309)
T ss_dssp CCHHHHHH--HHHHHHTTCCCS-SCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT-C--------
T ss_pred CCHHHHHH--HHHhheeccccC-CCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H-HHhH
Confidence 78999999 999999999999 99999999984 999999999999999999877755543322 22 2 2345
Q ss_pred cCCCE
Q psy9066 98 NFNHV 102 (275)
Q Consensus 98 l~nHv 102 (275)
+++|.
T Consensus 297 l~~h~ 301 (309)
T 3um7_A 297 LTAQS 301 (309)
T ss_dssp -----
T ss_pred HHHHH
Confidence 67774
No 23
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.07 E-value=6.7e-11 Score=108.69 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=55.9
Q ss_pred ccccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9066 20 RLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85 (275)
Q Consensus 20 ~~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y 85 (275)
...-++++||+| |+++|+|||||| |++|.|..||+++++.+++||.++++.++.+...+....
T Consensus 88 ~~~~w~~~~a~y--f~~~t~tTvGyG-d~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~ 150 (280)
T 3ukm_A 88 GNWNWDFTSALF--FASTVLSTTGYG-HTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHV 150 (280)
T ss_dssp --CCSSHHHHHH--HHHHHHTTCCCC-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChhcchh--heeeeeeccccC-CcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345579999999 999999999999 999999999999999999999999999998887666543
No 24
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.03 E-value=4.4e-11 Score=109.84 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=51.6
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcc-------hhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVW-------GKIVGSLCAIAGVLTIALPVPVIVSNFN 82 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~-------GRI~til~il~GI~ifAl~vgvI~s~f~ 82 (275)
.+++||+| |+++|+|||||| |++|.|.. ||+++++++++|+++++++++.+.+...
T Consensus 200 ~s~~da~y--~~~iTltTvGyG-D~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~ 262 (280)
T 3ukm_A 200 WNFLESFY--FCFISLSTIGLG-DYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHE 262 (280)
T ss_dssp CCHHHHHH--HHHHHHTTCCCC-SCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred Cchhhhhh--heeeeeecccCC-CCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999 999999999999 99999996 5999999999999999999998877544
No 25
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.62 E-value=9.7e-09 Score=90.63 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=53.1
Q ss_pred cccchHHHHHHHhhhhceeeceeec-CcceecCcch----hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q psy9066 21 LTQDLVVEAMWQMWGTNTRTELLFG-IHIRPVGVWG----KIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQ 91 (275)
Q Consensus 21 ~~f~Si~DAfW~ywavVTmTTVGYG-~DI~P~T~~G----RI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ 91 (275)
..|.++++|+| |.++|+||+||| ..++|.+..| +.+++++++.|+++++++++++.++|.+..++++++
T Consensus 176 ~~F~s~~~a~~--~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~~~~~ 249 (285)
T 3rvy_A 176 EWFGTLGESFY--TLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQH 249 (285)
T ss_dssp HHHSSHHHHHH--HHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred cccCCHHHHHH--HHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999 999999999999 5556988865 888999999999999999999999998766654433
No 26
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A
Probab=96.06 E-value=0.00095 Score=58.93 Aligned_cols=88 Identities=14% Similarity=-0.023 Sum_probs=63.1
Q ss_pred cCCCEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhccccc-ccc-------cCCCC--CCCcc-cc
Q psy9066 98 NFNHVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNF-NHV-------TSCPY--LPGTL-GQ 165 (275)
Q Consensus 98 l~nHvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f-~~~-------s~~p~--l~~~~-~~ 165 (275)
..++.+||+++...+-++...+-+.+...++ ....|.......|+|-+ +++ +++ +..|. +||++ |.
T Consensus 34 FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~~~~~t~EGe~~--~~~~~dL~l~~d~~~~~~fl~~p~tv~H~ 111 (208)
T 3agw_A 34 FSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFI--PLNQTDINVGYYTGDDRLFLVSPLIISHE 111 (208)
T ss_dssp BCSCEEEEEETTEEEEEEEECCCTTCCEEEEEEEEEEECCEECTTCCEE--TTCEEECCSSTTTTTTBCCCSSCEEEEEE
T ss_pred ecceEEEEecCCeEEEEEEEecCccCeEEeeEEEEEEEEEEECCCCcEE--EEEEEeeecccCCCCCceEEeccEEEEEE
Confidence 4677999999866677766666666566666 55567777777766644 333 333 34566 57888 99
Q ss_pred cccCCCCCCCcchhhhhhhccc
Q psy9066 166 HMKKSSLSESSSDMMELEEGLL 187 (275)
Q Consensus 166 ~~~~s~~~~~~~~~~e~~e~~~ 187 (275)
|+++||+.+-+.|.|+.++.|+
T Consensus 112 IDe~SPL~~~t~~~L~~~~~Ei 133 (208)
T 3agw_A 112 INQQSPFWEISKAQLPKEELEI 133 (208)
T ss_dssp CCTTSTTTTCCTTTGGGCCCEE
T ss_pred CCCCCCccccCHhHHhcCCeEE
Confidence 9999999998888888777554
No 27
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A
Probab=95.96 E-value=0.00064 Score=59.99 Aligned_cols=89 Identities=15% Similarity=-0.028 Sum_probs=65.3
Q ss_pred cCCCEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc-------cCCCC--CCCcc-ccc
Q psy9066 98 NFNHVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV-------TSCPY--LPGTL-GQH 166 (275)
Q Consensus 98 l~nHvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~-------s~~p~--l~~~~-~~~ 166 (275)
..++.+||+++...+-++...+-+.+...++ ....|.......|+|-+. ..+.++ +..|. +||++ |.|
T Consensus 32 FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~r~~~t~EGe~~~-~~~~~L~l~~d~~~~~~~l~~p~tv~H~I 110 (207)
T 1n9p_A 32 FSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLP-LDQLELDVGFSTGADQLFLVSPLTICHVI 110 (207)
T ss_dssp BCSCEEEEEETTEEEEEEEECCCSSSCEEEEEEEEEEEEEEECTTSCEEE-EEEEECCSSTTTTTTEEECSSCEEEEEEC
T ss_pred EeCcEEEEEECCEEEEEEEEecCCCCeEEccEEEEEEEEEEEcCCCcEEE-EEEEeeEeeccCCCCceEEEccEEEEEeC
Confidence 4678999999876677777766666666676 555688888888887764 222233 55676 67888 999
Q ss_pred ccCCCCCCCcchhhhhhhccc
Q psy9066 167 MKKSSLSESSSDMMELEEGLL 187 (275)
Q Consensus 167 ~~~s~~~~~~~~~~e~~e~~~ 187 (275)
+++||+.+-+.|.|+.++.|+
T Consensus 111 De~SPL~~~t~~~L~~~~~Ei 131 (207)
T 1n9p_A 111 DAKSPFYDLSQRSMQTEQFEV 131 (207)
T ss_dssp CTTSTTTTCCTTGGGTCCCEE
T ss_pred CCCCCccccCHhHHhcCCeEE
Confidence 999999998888887776543
No 28
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus}
Probab=95.63 E-value=0.00084 Score=59.21 Aligned_cols=89 Identities=13% Similarity=0.024 Sum_probs=64.2
Q ss_pred cCCCEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc-------cCCCC--CCCcc-ccc
Q psy9066 98 NFNHVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV-------TSCPY--LPGTL-GQH 166 (275)
Q Consensus 98 l~nHvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~-------s~~p~--l~~~~-~~~ 166 (275)
..++.+||+++...+-++...+-+.....++ ....|.......|+|-+. .++.++ +..|. +||++ |.|
T Consensus 32 FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~r~~~t~EGe~~~-~~~~~L~l~~d~~~~~~fl~~p~tv~H~I 110 (208)
T 2gix_A 32 FSHNAVIAMRDGKLCLMWRVGNLQKSHLVEAHVRAQLLKSRITSEGEYIP-LDQIDINVGFDSGIDRIFLVSPITIVHEI 110 (208)
T ss_dssp ECSCEEEEEETTEEEEEEEEEECCSSCEEEEEEEEEEEEEEECTTCCEEE-EEEEEECSSGGGTTTEECCSSCEEEEEEC
T ss_pred ecCeEEEEEeCCEEEEEEEEecCccCeEEeeEEEEEEEEEEeCCCCcEEE-EEEEEEEeccCCCCCceEEeccEEEEEEC
Confidence 4568899999866666666666555556666 556677777888777654 344443 34455 67888 999
Q ss_pred ccCCCCCCCcchhhhhhhccc
Q psy9066 167 MKKSSLSESSSDMMELEEGLL 187 (275)
Q Consensus 167 ~~~s~~~~~~~~~~e~~e~~~ 187 (275)
++.||+.+-+.|.|+.++.|+
T Consensus 111 De~SPL~~~t~~~L~~~~~Ei 131 (208)
T 2gix_A 111 DEDSPLYDLSKQDIDNADFEI 131 (208)
T ss_dssp CTTSTTTTCCHHHHHTCCCEE
T ss_pred CCCCCccccChhHHhcCCEEE
Confidence 999999999988888776554
No 29
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=95.28 E-value=0.0065 Score=51.68 Aligned_cols=60 Identities=8% Similarity=-0.054 Sum_probs=46.5
Q ss_pred cccchHHHHHHHhhhhceeeceeecCccee----cCcchhHHHHHH-HHHHHHHHHhhHHHHHHHHHH
Q psy9066 21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRP----VGVWGKIVGSLC-AIAGVLTIALPVPVIVSNFNY 83 (275)
Q Consensus 21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P----~T~~GRI~til~-il~GI~ifAl~vgvI~s~f~~ 83 (275)
..|.++++|+| +...++||.||+ |+.. .++++.++-+.+ .+.+..++.++++++.++|.+
T Consensus 161 ~~F~~~~~a~~--~lf~~~t~~~w~-~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~ 225 (229)
T 4dxw_A 161 SRWGDLGISLI--TLFQVLTLSSWE-TVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQ 225 (229)
T ss_dssp TTTSSHHHHHH--HHHHHHTTSSTH-HHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHH--HHHHHHccCCHH-HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999 999999999999 9732 344566654444 445678889999999988874
No 30
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus}
Probab=94.30 E-value=0.004 Score=57.27 Aligned_cols=89 Identities=13% Similarity=0.022 Sum_probs=64.0
Q ss_pred cCCCEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc-------cCCCC--CCCcc-ccc
Q psy9066 98 NFNHVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV-------TSCPY--LPGTL-GQH 166 (275)
Q Consensus 98 l~nHvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~-------s~~p~--l~~~~-~~~ 166 (275)
..++.+||+++...+-++...+-+.....++ ....|....+..++|-+. .++.++ +..|. +||++ |.|
T Consensus 37 FS~~AVI~~rdG~~~LMfRVaN~R~s~Iiea~Vrl~Lir~~~T~EGe~~~-~~~~dL~l~~d~~~~~~fL~~P~tV~H~I 115 (270)
T 1u4f_A 37 FSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIP-LDQIDINVGFDSGIDRIFLVSPITIVHEI 115 (270)
T ss_dssp ECSSEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEEEEEECTTCCEEE-EEEEECCSSTTTTTTEECCSSCEEEEEEC
T ss_pred ecCcEEEEEeCCEEEEEEEEecCCCCeEEeeEEEEEEEEEEEcCCCcEEE-eEEEEEEeccCCCCCceEEeccEEEEEEC
Confidence 4567899999866666766666556566666 556677777888777654 234433 34455 67888 999
Q ss_pred ccCCCCCCCcchhhhhhhccc
Q psy9066 167 MKKSSLSESSSDMMELEEGLL 187 (275)
Q Consensus 167 ~~~s~~~~~~~~~~e~~e~~~ 187 (275)
++.||+.+-+.+.|+.++.++
T Consensus 116 De~SPLy~~t~e~L~~~d~EI 136 (270)
T 1u4f_A 116 DEDSPLYDLSKQDIDNADFEI 136 (270)
T ss_dssp CTTSTTTTCCHHHHHHCCCEE
T ss_pred CCCCCccccChhhHhcCCeEE
Confidence 999999999988888776554
No 31
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus}
Probab=93.77 E-value=0.011 Score=55.26 Aligned_cols=89 Identities=13% Similarity=0.022 Sum_probs=63.7
Q ss_pred cCCCEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc-------cCCCC--CCCcc-ccc
Q psy9066 98 NFNHVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV-------TSCPY--LPGTL-GQH 166 (275)
Q Consensus 98 l~nHvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~-------s~~p~--l~~~~-~~~ 166 (275)
..++.+||+++...+-++...+-+.....++ ....|....+..++|-+. ++++++ ...|. +||++ |.|
T Consensus 76 FS~~AVI~~rDG~~cLMFRVaN~R~s~Iiea~Vr~~Lir~~~T~EGe~i~-~~~~dL~l~~d~~~~~~fL~~P~tV~H~I 154 (309)
T 2xky_I 76 FSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIP-LDQIDINVGFDSGIDRIFLVSPITIVHEI 154 (309)
T ss_pred EeccEEEEEECCEEEEEEEEecCcCCeEEccEEEEEEEEEEEcCCCcEEE-eeeeeeecccCCCCcceeEeccEEEEEEC
Confidence 4567999999876777777666666666777 555677777788766553 234433 13355 67888 999
Q ss_pred ccCCCCCCCcchhhhhhhccc
Q psy9066 167 MKKSSLSESSSDMMELEEGLL 187 (275)
Q Consensus 167 ~~~s~~~~~~~~~~e~~e~~~ 187 (275)
+++||+.+-+.+.|+.++.++
T Consensus 155 De~SPLy~~t~e~L~~~dfEI 175 (309)
T 2xky_I 155 DEDSPLYDLSKQDIDNADFEI 175 (309)
T ss_pred CCCCCccccChhhHhcCCeEE
Confidence 999999998888887776544
No 32
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=93.57 E-value=0.079 Score=51.67 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=45.4
Q ss_pred chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9066 24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNY 83 (275)
Q Consensus 24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~ 83 (275)
.++.+++| +++.+++..| + +..|.+..+|++.++|+++++++.+..++.+++.++.
T Consensus 562 ~~~~~~~~--~~~~~l~~~g-~-~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 562 FGIFNSLW--FSLGAFMQQG-A-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHH--HTTTTSCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH--HHHHHHHhcC-C-CcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35789999 9999999888 6 8999999999999999999999999999999887764
No 33
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}
Probab=77.11 E-value=0.26 Score=51.12 Aligned_cols=45 Identities=9% Similarity=-0.012 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCCCEEeCCC
Q psy9066 61 LCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFNHVTSCPY 107 (275)
Q Consensus 61 l~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~nHvIiCGy 107 (275)
..+++||++|++.++.+++.+........+ ....+.++|+|+||+
T Consensus 17 ~~IlgGI~lFa~~ig~liel~~~r~~~~G~--y~~~~~k~HIIIcG~ 61 (798)
T 3naf_A 17 EEILSKLYHIENELARIKKLLGERKKYGGS--YSAVSGRKHIVVCGH 61 (798)
T ss_dssp -------------------------CCCSS--CCCCCSSEEEEEESC
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhhCCc--cccccCCCeEEEEcC
Confidence 345899999999999988866532221111 111356899999997
No 34
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=57.53 E-value=1.6 Score=34.12 Aligned_cols=61 Identities=10% Similarity=-0.091 Sum_probs=32.6
Q ss_pred cccchHHHHHHHhhhhceeeceeecCcc-e-e---cCcchhHHHHHHHHHH-HHHHHhhHHHHHHHHHHH
Q psy9066 21 LTQDLVVEAMWQMWGTNTRTELLFGIHI-R-P---VGVWGKIVGSLCAIAG-VLTIALPVPVIVSNFNYF 84 (275)
Q Consensus 21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI-~-P---~T~~GRI~til~il~G-I~ifAl~vgvI~s~f~~~ 84 (275)
..|.++..|+. --...+|+=|+. |+ . | ..+...++-+.+++.| ..++-+.++++..+|.+.
T Consensus 34 ~~F~~~~~s~l--tLF~i~T~e~W~-~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f~~~ 100 (112)
T 4f4l_A 34 EWFGDLSKSLY--TLFQVMTLESWS-MGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMAIT 100 (112)
T ss_dssp HHHSSHHHHHH--HHHHHHTTTTCC-CCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHTTTC-------
T ss_pred ccccCHHHHHH--HHHHHHHccccH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778877 444555655665 32 1 3 3445556666665654 455678888888877654
No 35
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=22.01 E-value=1.2e+02 Score=24.32 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q psy9066 59 GSLCAIAGVLTIALPVPVIVSNFNYFYHRE 88 (275)
Q Consensus 59 til~il~GI~ifAl~vgvI~s~f~~~y~r~ 88 (275)
+++.++.-+++++++.++..-.+.....|.
T Consensus 2 TLiEllvviaIigiLaaia~p~~~~~~~~~ 31 (151)
T 3sok_A 2 TLIELMIVVAIIGILAAFAIPAYNDYIARS 31 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666655555544443
No 36
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=21.96 E-value=1.2e+02 Score=23.82 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy9066 60 SLCAIAGVLTIALPVPVIVSNFNYFYHR 87 (275)
Q Consensus 60 il~il~GI~ifAl~vgvI~s~f~~~y~r 87 (275)
++.++.-+++++++.++..-.+.....+
T Consensus 3 LiEllivi~Ii~il~~ia~p~~~~~~~~ 30 (144)
T 1oqw_A 3 LIELMIVVAIIGILAAIAIPQYQNYVAR 30 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555554444444443333
Done!