RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9066
         (275 letters)



>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
           voltage dependent, ION CH shaker, membrane protein,
           eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
           3lnm_B* 3lut_B* 2a79_B*
          Length = 514

 Score = 95.9 bits (238), Expect = 1e-22
 Identities = 64/196 (32%), Positives = 86/196 (43%), Gaps = 61/196 (31%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
           +A W  W   + T + +G  + P  + GKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR
Sbjct: 378 DAFW--WAVVSMTTVGYG-DMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 434

Query: 88  ETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDMQS 147
           ET+ E+                                                      
Sbjct: 435 ETEGEEQAQY-------------------------------------------------- 444

Query: 148 QNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGLLFGRDYSTSLTNKKLLSNNNL 207
                VTS P +P +      +S+ + S SD ME++EG+    + S     ++ L   N 
Sbjct: 445 ---LQVTSSPKIPSSPDLKKSRSASTISKSDYMEIQEGV----NNSNEDFREENLKTANS 497

Query: 208 SLCNPKH-NIMSIETD 222
           +L N  + NI  + TD
Sbjct: 498 TLANTNYVNITKMLTD 513


>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
           3.10A {Mesorhizobium loti} PDB: 2zd9_A*
          Length = 355

 Score = 78.4 bits (193), Expect = 7e-17
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
           +AMW  W   T +   +G    P    G+++     ++G+    L   ++ + F     R
Sbjct: 164 QAMW--WAVVTLSTTGYG-DTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR 220

Query: 88  ETDQEDMQSQNFNHV 102
                + Q      +
Sbjct: 221 GDFVRNWQLVAAVPL 235


>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
           IONS, cell membrane, transport PROT; 3.80A {Streptomyces
           lividans} PDB: 1f6g_A
          Length = 166

 Score = 73.4 bits (180), Expect = 4e-16
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
            A+W  W   T T + +G  + PV +WG++V  +  +AG+ +  L    + + F     +
Sbjct: 70  RALW--WSVETATTVGYG-DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQ 126

Query: 88  ETDQEDMQSQ 97
           +  Q    S+
Sbjct: 127 QQQQFVRHSE 136


>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
           cell membrane, ION transport, ionic channel, membrane,
           transmembrane; 3.80A {Streptomyces lividans}
          Length = 139

 Score = 69.9 bits (171), Expect = 3e-15
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
            A+W  W   T T + +G  + PV +WG++V  +  +AG+ +  L    + + F      
Sbjct: 43  RALW--WSVETATTVGYG-DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 99

Query: 88  ETDQEDMQSQ 97
                   S+
Sbjct: 100 RRGHFVRHSE 109


>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
           structure, membrane protein, metal transport; HET: PCA;
           NMR {Streptomyces lividans} SCOP: f.14.1.1
          Length = 155

 Score = 67.9 bits (166), Expect = 3e-14
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
           +A+W  W   T T + +G  + PV +WG+ V  +  +AG+ +  L    + + F      
Sbjct: 87  DALW--WSVETATTVGYG-DLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQE 143

Query: 88  ETDQEDMQSQ 97
                   S+
Sbjct: 144 RRGHFVRHSE 153


>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
           semi-synthetic, membrane protein; HET: 1EM; 1.72A
           {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
           1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
           2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
           3ifx_A* 1j95_A 2jk5_C* ...
          Length = 122

 Score = 65.9 bits (161), Expect = 6e-14
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
            A+W  W   T T + +G  + PV +WG++V  +  +AG+ +  L    + + F      
Sbjct: 64  RALW--WACETATTVAYG-DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 120

Query: 88  E 88
            
Sbjct: 121 R 121


>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
           ION transport, ionic channel, membrane, transmembrane,
           transport; NMR {Escherichia coli} PDB: 2kb1_A
          Length = 103

 Score = 63.6 bits (155), Expect = 3e-13
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
           +A+W  W   T T + +G    PV   G+ V      AG+   AL    + ++F      
Sbjct: 43  DAIW--WSVETATTVGYG-DRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREEE 99

Query: 88  ETDQ 91
               
Sbjct: 100 RRGH 103


>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
           protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
           2a0l_A
          Length = 223

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFN 82
           +A+W  W   T T + +G  + P    GK++G    + G+  + L +  + + F 
Sbjct: 168 DALW--WAVVTATTVGYG-DVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQ 219


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 36.4 bits (83), Expect = 0.009
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 28/131 (21%)

Query: 135 HNDVGSSWEDMQSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGLLFGRDYST 194
            +D+   + D     ++H          +G H+K     E     M L   +    D+  
Sbjct: 461 SDDLIPPYLDQYF--YSH----------IGHHLKNIEHPE----RMTLFRMVFL--DFRF 502

Query: 195 SLTNKKLLSNNNLSLCNPKHNIMS--------IETDWDHYKRMKLVLVSFLYKYWYNVDH 246
            L  K    +   +      N +         I  +   Y+R+   ++ FL K   N+  
Sbjct: 503 -LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL-I 560

Query: 247 PVPHSCSLGLG 257
              ++  L + 
Sbjct: 561 CSKYTDLLRIA 571



 Score = 34.8 bits (79), Expect = 0.026
 Identities = 41/303 (13%), Positives = 87/303 (28%), Gaps = 95/303 (31%)

Query: 21  LTQDLVVEAMWQMWGTN--------TRTELLFGIH-----IRP---VGVWGKIVGSLCAI 64
           +   + +E   +++  N        +R +    +      +RP   V + G + GS    
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-GS---- 161

Query: 65  AG--VLTI-ALPVPVIVSNFNY--FY----HRETDQEDM-QSQNFNHVTSCPYLPGTLGE 114
            G   + +       +    ++  F+    +  + +  +   Q   +     +       
Sbjct: 162 -GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS----- 215

Query: 115 WLVDNSSSRSRKVAAATG---------------LVHNDVGSSWEDMQSQNFNHVTSCPYL 159
              D+SS+   ++ +                  LV  +V ++        FN   SC  L
Sbjct: 216 -RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA---WNAFNL--SCKIL 269

Query: 160 PGT---------LGQHMKKSSLSESSSDMMELEEGL-LFGRDYSTSLTNKKL----LSNN 205
             T                 SL +  S  +  +E   L  +        + L    L+ N
Sbjct: 270 LTTRFKQVTDFLSAATTTHISL-DHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLTTN 326

Query: 206 NLSLC----NPKHNIMSIETDWDHYKRMKL---------VLVSFLYKYWY------NVDH 246
              L     + +  + + +  W H    KL         VL    Y+  +          
Sbjct: 327 PRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 247 PVP 249
            +P
Sbjct: 386 HIP 388



 Score = 28.7 bits (63), Expect = 3.0
 Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 39/159 (24%)

Query: 114 EWLVDNSSSRSRKVAAATGLVHNDVGSSWEDMQSQNFNHVTSC-PYL----------PGT 162
           ++L+    +  R+ +  T +        + D Q     +V+   PYL          P  
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 163 -LGQH-MK---KSSLSESSSDMMELEEG-------LLFGRDYSTSLTNKKL--------- 201
            +    +    K+ ++       +++         L      S     + L         
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 202 -LSNNNLSLCNPKHNIMSIETD------WDHYKRMKLVL 233
             ++ +    N K  I SI+ +         Y+   LVL
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250



 Score = 28.3 bits (62), Expect = 3.7
 Identities = 22/144 (15%), Positives = 39/144 (27%), Gaps = 40/144 (27%)

Query: 80  NFNYF-----YH-RETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGL 133
              YF     +H +  +  +  +  F  V    +L      +L        +K+      
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTL-FRMV----FL--DFR-FL-------EQKI-RHDST 512

Query: 134 VHNDVGSSWEDMQSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGLL-FGRDY 192
             N  GS    +Q   F       Y          K  + ++      L   +L F    
Sbjct: 513 AWNASGSILNTLQQLKF-------Y----------KPYICDNDPKYERLVNAILDFLPKI 555

Query: 193 STSLTNKKLLSNNNLSLCNPKHNI 216
             +L   K      ++L      I
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAI 579


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.2 bits (83), Expect = 0.010
 Identities = 57/310 (18%), Positives = 92/310 (29%), Gaps = 132/310 (42%)

Query: 22  TQDLVVEAM------WQMWGTNTRT--ELLFGIHIR------PVGVWGKIV--------G 59
           +Q LV          W+ +  + R    +LF I +R         +   I+        G
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333

Query: 60  SLC---AIAGVLTIA------------LPV--PVIVSNFNYFYHRETDQEDMQSQNFNHV 102
                 +I+  LT              LP    V +S  N             ++N   V
Sbjct: 334 VPSPMLSISN-LTQEQVQDYVNKTNSHLPAGKQVEISLVN------------GAKNLV-V 379

Query: 103 TSCP-YLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDMQSQ--------NFNHV 153
           +  P  L G L   L        RK  A +GL   D        QS+         F++ 
Sbjct: 380 SGPPQSLYG-LNLTL--------RKAKAPSGL---D--------QSRIPFSERKLKFSNR 419

Query: 154 ---TSCPYLPGTLGQHMKKSSLSESSSDMME---LEEGLLF-GRD-----YSTSLTNKKL 201
               + P+       H   S L   +SD++    ++  + F  +D     Y T      L
Sbjct: 420 FLPVASPF-------H---SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF-DGSDL 468

Query: 202 --LSNN-NLSLCNPKHNIMSIETDWDHYKRMKLVLVSFLYKYWYNVDHPVPHSCSLGLGR 258
             LS + +  + +    I+ +   W+                         H   L  G 
Sbjct: 469 RVLSGSISERIVD---CIIRLPVKWET-----------------TTQFKATH--ILDFGP 506

Query: 259 GSQGLFGVGS 268
           G  G  G+G 
Sbjct: 507 G--GASGLGV 514



 Score = 31.6 bits (71), Expect = 0.34
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 86/218 (39%)

Query: 12   ELLFGIHIRLTQD-----LVVE-AMWQMWGTNTRTELLFGIHIRPVGVWGKIVG---SLC 62
             LL       TQ       ++E A ++      +++   G+        G  +G   +L 
Sbjct: 1724 GLLS-----ATQFTQPALTLMEKAAFEDL----KSK---GLIPADATFAGHSLGEYAALA 1771

Query: 63   AIAGVLTIALPVPVIVSNFNYFYHR-ETDQEDMQ--SQNFNHVTSCPYLPGTLG------ 113
            ++A V++I   V V+       ++R  T Q  +       ++       PG +       
Sbjct: 1772 SLADVMSIESLVEVV-------FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824

Query: 114  --EWLVDNSSSRSRKVAAATGLVHNDVGSSWEDMQSQNFNHVTSCPYLPG---------- 161
              +++V+       +V   TG +          ++  N+N       +            
Sbjct: 1825 ALQYVVE-------RVGKRTGWL----------VEIVNYN-------VENQQYVAAGDLR 1860

Query: 162  ---TLGQHMKK--------SSLSESSSDMMELEEGLLF 188
               T+   +            L +S S  +E  EG LF
Sbjct: 1861 ALDTVTNVLNFIKLQKIDIIELQKSLS--LEEVEGHLF 1896



 Score = 27.7 bits (61), Expect = 5.4
 Identities = 37/212 (17%), Positives = 54/212 (25%), Gaps = 76/212 (35%)

Query: 66  GVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSR 125
           G L   L VP        F+     QE      FN +   P    T G    D  ++ + 
Sbjct: 14  GSLEHVLLVPT-----ASFFIASQLQEQ-----FNKILPEP----TEGFAADDEPTTPAE 59

Query: 126 KVAAATGLVHNDVGSSWEDMQSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEG 185
            V    G V + V    E  +   F+ V                  L+E           
Sbjct: 60  LVGKFLGYVSSLV----EPSKVGQFDQVL--------------NLCLTE----------- 90

Query: 186 LLFGRDYSTSLTNKKLLSNNNLSLCNPKHNIM-SIETDWDHYKRMKLVLVSFLYKYWYN- 243
             F   Y         L  N++      H +   +  +        LV    L K +   
Sbjct: 91  --FENCY---------LEGNDI------HALAAKLLQE----NDTTLVKTKELIKNYITA 129

Query: 244 ---VDHPVPHSCSLGLGRGSQ-------GLFG 265
                 P     +  L R           +FG
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
           transcription factor, DNA-binding, DNA-directed RNA
           polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 33.1 bits (75), Expect = 0.064
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 13/72 (18%)

Query: 87  RETDQEDMQS--QNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHN----DVGS 140
           RE+  +       N N V +CP       + +     S    V A  GLV +    D  S
Sbjct: 4   RESIDKRAGRRGPNLNIVLTCPECKVYPPKIVER--FSEGDVVCALCGLVLSDKLVDTRS 61

Query: 141 SWEDMQSQNFNH 152
            W     + F++
Sbjct: 62  EW-----RTFSN 68


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 32.0 bits (72), Expect = 0.14
 Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 184 EGLLFGRDYSTSLTNKKLLSNNNLSLCNPKHNIMS-IETDWDHYKRMKLVLVSF 236
            G+    +YS+ +    + S++   +  P   I+S +E      K  K +++++
Sbjct: 116 VGMAIQVNYSSEVKENSVDSDDKAKV-PPLIRIVSGLELSDTKQKGKKFLVIAY 168


>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
           helix bundle, membrane protein; 3.30A
           {Methanothermobacter thermautotrophicusorganism_taxid}
           SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
          Length = 336

 Score = 32.4 bits (74), Expect = 0.15
 Identities = 12/107 (11%), Positives = 30/107 (28%), Gaps = 7/107 (6%)

Query: 13  LLFGIHIRLTQDL-VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIA 71
           +         +      +++  W   T   + +G    P    G        + G+ T A
Sbjct: 32  IYGTAGFHFIEGESWTVSLY--WTFVTIATVGYGD-YSPSTPLGMYFTVTLIVLGIGTFA 88

Query: 72  LPVPVIVSNFNYFYHRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVD 118
           + V  ++         +       +++  HV  C +         + 
Sbjct: 89  VAVERLLEFLINREQMKLMGLIDVAKS-RHVVICGW--SESTLECLR 132


>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
          open conformation, IO transport; 1.45A
          {Methanothermobacter thermautotrophicusorganism_taxid}
          PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
          Length = 82

 Score = 28.5 bits (64), Expect = 0.69
 Identities = 6/34 (17%), Positives = 11/34 (32%)

Query: 48 IRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNF 81
            P    G        + G+ T A+ V  ++   
Sbjct: 48 YSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81


>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
           4-helical bundle, ION channel, membrane, transport
           protein; 3.20A {Bacillus weihenstephanensis}
          Length = 148

 Score = 26.4 bits (58), Expect = 6.2
 Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
            ++A++  +   T T +  G    P   +GK+   L    G+  +   +  +  N     
Sbjct: 53  PLDALY--FSVVTLTTVGDGN-FSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPS 109

Query: 86  HRETDQED 93
                +++
Sbjct: 110 ILSNRKKE 117


>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
           decarboxylase; structural genomics, APC91511.1,
           glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
           parahaemolyticus}
          Length = 497

 Score = 27.3 bits (61), Expect = 7.2
 Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 99  FNHVTSCPYLPGTLGEWLVD--NSSSRSRKVAAA 130
             H+ + P +P    E ++   N S  S   A++
Sbjct: 104 IAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASS 137


>3tc2_A Kunitz-type proteinase inhibitor P1H5; beta-trefoil fold, protease
           inhibitor, hydrolase inhibitor; 1.60A {Solanum
           tuberosum}
          Length = 187

 Score = 26.5 bits (58), Expect = 8.5
 Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 2/68 (2%)

Query: 75  PVIVSNFNYFYHRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLV 134
           PV     +          + +  N     S   +  +   W V +  +    +   TG  
Sbjct: 65  PVRFIGSSSH--FGQGIFEDELLNIQFAISTSKMCVSYTIWKVGDYDASLGTMLLETGGT 122

Query: 135 HNDVGSSW 142
                SSW
Sbjct: 123 IGQADSSW 130


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.134    0.429 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,189,456
Number of extensions: 231158
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 24
Length of query: 275
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 183
Effective length of database: 4,133,061
Effective search space: 756350163
Effective search space used: 756350163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.9 bits)