RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9066
         (275 letters)



>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
          coelicolor [TaxId: 1902]}
          Length = 103

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNF 81
           A+W  W   T T + +G    PV +WG+ V  +  +AG+ +  L    + + F
Sbjct: 43 RALW--WSVETATTVGYGDLY-PVTLWGRCVAVVVMVAGITSFGLVTAALATWF 93


>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
           kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
           188]}
          Length = 116

 Score = 31.5 bits (71), Expect = 0.039
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFN 82
           +A +  +   T   + +G  I P+G     + +L A+ G+L +A+   +I + F 
Sbjct: 63  DAFF--FSVQTMATIGYGKLI-PIGPLANTLVTLEALCGMLGLAVAASLIYARFT 114


>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
           Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 116

 Score = 30.7 bits (69), Expect = 0.066
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 27  VEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNF 81
           V A +  +   T   + +G    P  V+   + +L    G+  IAL   ++ + F
Sbjct: 63  VGAFF--FSVETLATVGYGDM-HPQTVYAHAIATLEIFVGMSGIALSTGLVFARF 114


>d1vqra_ a.211.1.3 (A:) Hypothetical protein Cj0248 {Campylobacter
           jejuni [TaxId: 197]}
          Length = 286

 Score = 27.9 bits (61), Expect = 1.3
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 143 EDMQSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGLLFGRDYSTSLTNKKLL 202
            DM       V   P LP T+ +  K  S + S+ + M++ E  +   D   +    KLL
Sbjct: 4   GDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE--IISSDPLMTA---KLL 58

Query: 203 SNNNLSLCNPKHNIMSIE 220
              N         I +I 
Sbjct: 59  QLANSPYYGFTREITTIN 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.429 

Gapped
Lambda     K      H
   0.267   0.0460    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,050,498
Number of extensions: 45001
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 6
Length of query: 275
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,254,276
Effective search space: 239566716
Effective search space used: 239566716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)