BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9067
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 109 bits (273), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
LA H ++H+ E+P+KC C + F L H THTG KP+KC C F+ L H
Sbjct: 37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Query: 83 VRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCT 142
R HT EKP+ C C + +L+ +R H R+HTGE+PY+C C
Sbjct: 97 QRT----------------HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 143 YASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+ L H R HTGEKPY C C F++ ++L H+ HT
Sbjct: 141 KSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 78/155 (50%), Gaps = 16/155 (10%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
E+P+ C C + F L H THTG KP+KC C F+ +L RH R
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT------- 71
Query: 93 ELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLK 152
HT EKP+KC C + + + +R H R+HTGE+PY C C + L+
Sbjct: 72 ---------HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
H R HTGEKPY C C F++ ++L +H+ HT
Sbjct: 123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT 157
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 60 GVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVE 119
G KP+ C C F+ S L H R HT EKP+KC C + +
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRT----------------HTGEKPYKCPECGKSFSD 61
Query: 120 LSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSL 179
+ H R+HTGE+PY+C C + L+ H R HTGEKPYAC C F+Q L
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 180 KSHRLIHT 187
++H+ HT
Sbjct: 122 RAHQRTHT 129
Score = 33.1 bits (74), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 157 IHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+ GEKPYAC C F++S+ L H+ HT
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHT 45
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPY 164
EKP+KC C + + S ++ H R+HTGE+PY+C C + + L++H R HTGEKPY
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 165 ACDICHARFTQSNSLKSHRLIH 186
C C F++S+ L H+ H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELS 121
KP+KC C F+ S L +H R HT EKP+KC C + + S
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRT----------------HTGEKPYKCPECGKSFSQSS 46
Query: 122 KMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
++ H R+HTGE+PY+C C + + L RH R H +K
Sbjct: 47 DLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 16/102 (15%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
E+P+KC C + F ++LQ H THTG KP+KC C F+ S +L +H R
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT------- 54
Query: 93 ELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 134
HT EKP+KC C + + H R+H ++
Sbjct: 55 ---------HTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
L +H ++H+ E+P+KC C + F + LQ H THTG KP+KC C F+ S L RH
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRH 79
Query: 83 VR 84
R
Sbjct: 80 QR 81
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
E+PY+C C + + L++H R HTGEKPY C C F+QS+ L+ H+ HT
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHT 56
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVK 62
L +H ++H+ E+P+KC C + F L H TH K
Sbjct: 48 LQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 102 HTH-EKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH--CTYASPDTFKLKRHLRIH 158
HTH + H C+ C A VE SK++ H HTGE+P+QC C F L+ H+RIH
Sbjct: 28 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Query: 159 TGEKPYAC--DICHARFTQSNSLKSHRLIHT 187
TG++PY C D C+ +F QS +LKSH L H
Sbjct: 88 TGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 107 PHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
PHK C + S MR H+ +H G R + CA C A ++ KLKRH +HTGEKP+ C
Sbjct: 9 PHK--GCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 167 DI--CHARFTQSNSLKSHRLIHT 187
C RF+ +L++H IHT
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHT 88
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 21/119 (17%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELV 80
+ +HL +H R H C+ C + F + L+ H HTG KP +C + C RF+ L
Sbjct: 23 MRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
Query: 81 RHVRYKHTHEKPELVRHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQ 137
HVR HT ++P+ C C+ + + +++H+ +H + Q
Sbjct: 82 THVRI----------------HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 16 RYHVMYLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVK 62
R+ + + L H++ H+ +RP+ C C + F +L++HI TH K
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%)
Query: 107 PHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
PHKC +C K++ HMR HTG +PY+C C YA+ D+ L +HLRIH+ E+P+ C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 167 DICHARFTQSNSLKSHRLIHT 187
IC S+ L H HT
Sbjct: 68 QICPYASRNSSQLTVHLRSHT 88
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 54/105 (51%), Gaps = 16/105 (15%)
Query: 29 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHT 88
S PHKC VC + F L+ H+ HTGVKP+KCK C+ S L +H+R
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI--- 58
Query: 89 HEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGE 133
H+ E+P KC IC YAS S++ H+RSHTG+
Sbjct: 59 -------------HSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 16/99 (16%)
Query: 63 PHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSK 122
PHKC+ C F+ +L H+R HT KP+KC CDYA+ + S
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRC----------------HTGVKPYKCKTCDYAAADSSS 51
Query: 123 MRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGE 161
+ H+R H+ ERP++C C YAS ++ +L HLR HTG+
Sbjct: 52 LNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
L H++ H+ +P+KC C+ +SL H+ H+ +P KC+ C S +L H
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Query: 83 VR 84
+R
Sbjct: 84 LR 85
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTG 60
L +HL+ HS+ERP KC +C + + L H+ +HTG
Sbjct: 52 LNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTG 89
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 104 HEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGE 161
HE+P+ C + CD ++ H+R HTG++P+QC C + L H+R HTGE
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 162 KPYACDICHARFTQSNSLKSHRLIH 186
KP+ACDIC +F +S+ K H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
L RH++ H+ ++P +C +C R F L HI THTG KP C C +F S E RH
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 83 VR 84
+
Sbjct: 82 TK 83
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 62 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVE 119
+P+ C + C+ RF+ S EL RH+R HT +KP +C IC
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI----------------HTGQKPFQCRICMRNFSR 46
Query: 120 LSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIH 158
+ H+R+HTGE+P+ C C + + KRH +IH
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 33 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 90
ERP+ C V C+R F L HI HTG KP +C+ C F+ S L H+R
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR------ 55
Query: 91 KPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 130
HT EKP C IC + + H + H
Sbjct: 56 ----------THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 133 ERPYQCA--HCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
ERPY C C + +L RH+RIHTG+KP+ C IC F++S+ L +H HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 58
L H+++H+ E+P C +C R F + H H
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 105 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
E+P+ C + CD + S + H+R HTG++P+QC C + L H+R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 163 PYACDICHARFTQSNSLKSHRLIH 186
P+ACDIC +F +S+ K H IH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 16 RYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTT 75
R+ L RH++ H+ ++P +C +C R F L HI THTG KP C C +F
Sbjct: 15 RFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 76 SGELVRHVR 84
S E RH +
Sbjct: 75 SDERKRHTK 83
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 33 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 90
ERP+ C V C+R F ++L HI HTG KP +C+ C F+ S L H+R
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----- 56
Query: 91 KPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 130
HT EKP C IC + + H + H
Sbjct: 57 -----------HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 62 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVE 119
+P+ C + C+ RF+ S L RH+R HT +KP +C IC
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRI----------------HTGQKPFQCRICMRNFSR 46
Query: 120 LSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
+ H+R+HTGE+P+ C C + + KRH +IH +K
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 133 ERPYQCA--HCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
ERPY C C D+ L RH+RIHTG+KP+ C IC F++S+ L +H HT
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 105 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
E+P+ C + CD + + H+R HTG++P+QC C + L H+R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 163 PYACDICHARFTQSNSLKSHRLIH 186
P+ACDIC +F +S+ K H IH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 18/103 (17%)
Query: 62 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVE 119
+P+ C + C+ RF+ SG L RH+R HT +KP +C IC
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI----------------HTGQKPFQCRICMRNFSR 46
Query: 120 LSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
+ H+R+HTGE+P+ C C + + KRH +IH +K
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 33 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 90
ERP+ C V C+R F SL HI HTG KP +C+ C F+ S L H+R
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----- 56
Query: 91 KPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 130
HT EKP C IC + + H + H
Sbjct: 57 -----------HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 16 RYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTT 75
R+ L RH++ H+ ++P +C +C R F L HI THTG KP C C +F
Sbjct: 15 RFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 76 SGELVRHVR 84
S E RH +
Sbjct: 75 SDERKRHTK 83
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 133 ERPYQCA--HCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
ERPY C C + L RH+RIHTG+KP+ C IC F++S+ L +H HT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 105 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
E+P+ C + CD +++ H+R HTG++P+QC C + L H+R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 163 PYACDICHARFTQSNSLKSHRLIH 186
P+ACDIC +F +S+ K H IH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 18/103 (17%)
Query: 62 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVE 119
+P+ C + C+ RF+ S EL RH+R HT +KP +C IC
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRI----------------HTGQKPFQCRICMRNFSR 46
Query: 120 LSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
+ H+R+HTGE+P+ C C + + KRH +IH +K
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 16 RYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTT 75
R+ L RH++ H+ ++P +C +C R F L HI THTG KP C C +F
Sbjct: 15 RFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 76 SGELVRHVR 84
S E RH +
Sbjct: 75 SDERKRHTK 83
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 33 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 90
ERP+ C V C+R F A L HI HTG KP +C+ C F+ S L H+R
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----- 56
Query: 91 KPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 130
HT EKP C IC + + H + H
Sbjct: 57 -----------HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 133 ERPYQCA--HCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
ERPY C C + +L RH+RIHTG+KP+ C IC F++S+ L +H HT
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 105 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
E+P+ C + CD ++ H+R HTG++P+QC C + L H+R HTGEK
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 163 PYACDICHARFTQSNSLKSHRLIH 186
P+ACDIC +F +S+ K H IH
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
L RH++ H+ ++P +C +C R F L HI THTG KP C C +F S E RH
Sbjct: 21 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 80
Query: 83 VR 84
+
Sbjct: 81 TK 82
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 62 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVE 119
+P+ C + C+ RF+ S EL RH+R HT +KP +C IC
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRI----------------HTGQKPFQCRICMRNFSR 45
Query: 120 LSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIH 158
+ H+R+HTGE+P+ C C + + KRH +IH
Sbjct: 46 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 33 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 90
ERP+ C V C+R F L HI HTG KP +C+ C F+ S L H+R
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR------ 54
Query: 91 KPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 130
HT EKP C IC + + H + H
Sbjct: 55 ----------THTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 133 ERPYQCA--HCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
ERPY C C + +L RH+RIHTG+KP+ C IC F++S+ L +H HT
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 57
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 58
L H+++H+ E+P C +C R F + H H
Sbjct: 49 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 105 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
E+P+ C + CD ++ H+R HTG++P+QC C + L H+R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 163 PYACDICHARFTQSNSLKSHRLIH 186
P+ACDIC +F +S+ K H IH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
L RH++ H+ ++P +C +C R F L HI THTG KP C C +F S E RH
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 83 VR 84
+
Sbjct: 82 TK 83
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 18/103 (17%)
Query: 62 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVE 119
+P+ C + C+ RF+ S EL RH+R HT +KP +C IC
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI----------------HTGQKPFQCRICMRNFSR 46
Query: 120 LSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
+ H+R+HTGE+P+ C C + + KRH +IH +K
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 33 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 90
ERP+ C V C+R F L HI HTG KP +C+ C F+ S L H+R
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----- 56
Query: 91 KPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 130
HT EKP C IC + + H + H
Sbjct: 57 -----------HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 133 ERPYQCA--HCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
ERPY C C + +L RH+RIHTG+KP+ C IC F++S+ L +H HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 105 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
E+P+ C + CD + + H+R HTG++P+QC C + L H+R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 163 PYACDICHARFTQSNSLKSHRLIH 186
P+ACDIC +F +S+ K H IH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 16 RYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTT 75
R+ L RH++ H+ ++P +C +C R F L HI THTG KP C C +F
Sbjct: 15 RFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 76 SGELVRHVR 84
S E RH +
Sbjct: 75 SDERKRHTK 83
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 33 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 90
ERP+ C V C+R F A L HI HTG KP +C+ C F+ S L H+R
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----- 56
Query: 91 KPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 130
HT EKP C IC + + H + H
Sbjct: 57 -----------HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 18/103 (17%)
Query: 62 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVE 119
+P+ C + C+ RF+ S +L RH+R HT +KP +C IC
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRI----------------HTGQKPFQCRICMRNFSR 46
Query: 120 LSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
+ H+R+HTGE+P+ C C + + KRH +IH +K
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 133 ERPYQCA--HCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
ERPY C C + L RH+RIHTG+KP+ C IC F++S+ L +H HT
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 29/142 (20%)
Query: 69 CESRFTTSGELVRHVRYKHTH-EKPE--------------------LVRHVRYKHTHEKP 107
C F + +LV H+ +H H E+ E LV H+R +HT EKP
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RHTGEKP 67
Query: 108 HKCSI--CDYASVELSKMRNHMRSHTGERPYQCAH--CTYA-SPDTFKLKRHLRIHTGEK 162
HKC+ C + L ++ H+RSHTGE+PY C H C+ A S + + K R H+ EK
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 163 PYACDI--CHARFTQSNSLKSH 182
PY C + C R+T +SL+ H
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKH 149
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 5 IYYWSDTTGYLR-YHVMYLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGV 61
+ +W + LR + Y+L H++ H+ E+PHKC+ C + + + +L+ H+ +HTG
Sbjct: 36 VCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE 95
Query: 62 KPHKCKY--CESRFTTSGELVRHVRYKHTHEKP 92
KP+ C++ C F+ + + +H H++EKP
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 105 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
E+P+ C + CD + + + H+R HTG++P+QC C L H+R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 163 PYACDICHARFTQSNSLKSHRLIH 186
P+ACDIC +F ++ H IH
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 16 RYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTT 75
R+ L H++ H+ ++P +C +C R F ASL HI THTG KP C C +F T
Sbjct: 15 RFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFAT 74
Query: 76 SGELVRHVR 84
RH +
Sbjct: 75 LHTRTRHTK 83
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 33 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 90
ERP+ C V C+R F +L HI HTG KP +C+ C F+ L H+R
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR------ 55
Query: 91 KPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 130
HT EKP C IC L H + H
Sbjct: 56 ----------THTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 133 ERPYQCA--HCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
ERPY C C L H+RIHTG+KP+ C IC F+Q SL +H HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHT 58
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 62 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVE 119
+P+ C + C+ RF+ L H+R HT +KP +C IC +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI----------------HTGQKPFQCRICMRNFSQ 46
Query: 120 LSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
+ + H+R+HTGE+P+ C C RH +IH +K
Sbjct: 47 QASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 105 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
E+P+ C + CD + + + H+R HTG++P+QC C L +H+R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 163 PYACDICHARFTQSNSLKSHRLIH 186
P+ACDIC +F ++ H IH
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIH 85
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 33 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 90
ERP+ C V C+R F +L HI HTG KP +C+ C F+ L +H+R
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR------ 55
Query: 91 KPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 130
HT EKP C IC L H + H
Sbjct: 56 ----------THTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 16 RYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTT 75
R+ L H++ H+ ++P +C +C R F L HI THTG KP C C +F T
Sbjct: 15 RFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFAT 74
Query: 76 SGELVRHVRYKHT 88
H R +HT
Sbjct: 75 L-----HTRDRHT 82
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 62 KPHKC--KYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVE 119
+P+ C + C+ RF+ L H+R HT +KP +C IC +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI----------------HTGQKPFQCRICMRNFSQ 46
Query: 120 LSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
+ + H+R+HTGE+P+ C C RH +IH +K
Sbjct: 47 HTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 133 ERPYQCA--HCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
ERPY C C L H+RIHTG+KP+ C IC F+Q L H HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHT 58
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 58
L +H+++H+ E+P C +C R F T+ + H H
Sbjct: 50 LNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 67 KYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNH 126
K C+ F+T ELV HV +H PE HV Y + K Y K+ NH
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVG-GPEQNNHVCYWEECPREGKSFKAKY------KLVNH 81
Query: 127 MRSHTGERPYQC--AHCTYASPDTFKLKRHLRIHTGEKPYACDI--CHARFTQSNSLKSH 182
+R HTGE+P+ C C + LK H R HTGEKP+ C+ C RF S+ K H
Sbjct: 82 IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141
Query: 183 RLIHT 187
+HT
Sbjct: 142 MHVHT 146
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 3 NTIYYWSDTTGYLR-YHVMYLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHT 59
N + YW + + + Y L H++ H+ E+P C C + F +L+ H THT
Sbjct: 57 NHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116
Query: 60 GVKPHKCKY--CESRFTTSGELVRHVRYKHTHEK 91
G KP KC++ C+ RF S + +H+ + HT +K
Sbjct: 117 GEKPFKCEFEGCDRRFANSSDRKKHM-HVHTSDK 149
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 37/96 (38%), Gaps = 20/96 (20%)
Query: 43 RGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPELVRHVRY 100
+ FK L NHI HTG KP C + C F S L H R
Sbjct: 70 KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT--------------- 114
Query: 101 KHTHEKPHKCSI--CDYASVELSKMRNHMRSHTGER 134
HT EKP KC CD S + HM HT ++
Sbjct: 115 -HTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 20/112 (17%)
Query: 31 SEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYK 86
SE+RP C+ C + + ++ LQ H HTG KP++C + CE RF+ S +L RH R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-- 59
Query: 87 HTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+HT KP +C C ++ H R+HTGE+P+ C
Sbjct: 60 --------------RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 103 THEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQC--AHCTYASPDTFKLKRHLRIH 158
+ ++P C+ C+ +LS ++ H R HTGE+PYQC C + +LKRH R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
TG KP+ C C +F++S+ LK+H HT
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 101 KHTHEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIH 158
KHT EKP++C C+ +++ H R HTG +P+QC C + LK H R H
Sbjct: 30 KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
Query: 159 TGEKPYACDI--CHARFTQSNSLKSHRLIH 186
TGEKP++C C +F +S+ L H +H
Sbjct: 90 TGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 16 RYHVMYLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRF 73
RY + L H + H+ E+P++C CER F L+ H HTGVKP +CK C+ +F
Sbjct: 17 RYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKF 76
Query: 74 TTSGELVRHVRYKHTHEKP 92
+ S L H R HT EKP
Sbjct: 77 SRSDHLKTHTRT-HTGEKP 94
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 16 RYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKY--CESRF 73
R+ L RH + H+ +P +C C+R F L+ H THTG KP C++ C+ +F
Sbjct: 47 RFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKF 106
Query: 74 TTSGELVRH 82
S ELVRH
Sbjct: 107 ARSDELVRH 115
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 16/95 (16%)
Query: 38 CSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRH 97
C +C + FK ++L H+ H+ +P+ C+YC RF H+K ++ +H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRF---------------HQKSDMKKH 48
Query: 98 VRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTG 132
+ HT EKPHKC +C A + S + H R HTG
Sbjct: 49 T-FIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 110 CSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDIC 169
C IC + S + H+ H+ RPY C +C +K+H IHTGEKP+ C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 170 HARFTQSNSLKSHRLIHT 187
F+QS++L +H HT
Sbjct: 64 GKAFSQSSNLITHSRKHT 81
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
L+ HL HS+ RP+ C C + F + ++ H HTG KPHKC+ C F+ S L+ H
Sbjct: 17 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Query: 83 VRYKHT 88
R KHT
Sbjct: 77 SR-KHT 81
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 16/95 (16%)
Query: 66 CKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRN 125
CK C F S L H+ L+ H+ +P+ C C + S M+
Sbjct: 4 CKICGKSFKRSSTLSTHL----------LI------HSDTRPYPCQYCGKRFHQKSDMKK 47
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTG 160
H HTGE+P++C C A + L H R HTG
Sbjct: 48 HTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 136 YQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+ C C + + L HL IH+ +PY C C RF Q + +K H IHT
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT 53
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 16 RYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTG 60
R+H + +H H+ E+PHKC VC + F ++L H HTG
Sbjct: 38 RFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 113 CDYAS-----VELSKMRNHMRSHTGERPYQCA--HCTYASPDTFKLKRHLRIHTGEKPYA 165
CDY + S ++ H+R+HTGE+PY+C C + + +L RH R HTG KP+
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 166 CDICHARFTQSNSLKSH 182
C +C+ F++S+ L H
Sbjct: 78 CGVCNRSFSRSDHLALH 94
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 18/92 (19%)
Query: 41 CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPELVRHV 98
C + + + L+ H+ THTG KP+KC + C+ RF S EL RH R
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-------------- 68
Query: 99 RYKHTHEKPHKCSICDYASVELSKMRNHMRSH 130
KHT KP +C +C+ + + HM+ H
Sbjct: 69 --KHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 23 LARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELV 80
L HL++H+ E+P+KC+ C+ F L H HTG KP +C C F+ S L
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 81 RHVR 84
H++
Sbjct: 93 LHMK 96
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 58
L RH + H+ +P +C VC R F L H+ H
Sbjct: 63 LTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 17 YHVMYLLARHLKSHSEERPHKC--SVCERGFKTIASLQNHINTHTGVKPHKCKY--CESR 72
Y+ + L HL H+ E+P C CE+GF ++ L H THTG K C C+ R
Sbjct: 24 YNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLR 83
Query: 73 FTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTG 132
FTT + +H H + V H C A + ++++ H SHT
Sbjct: 84 FTTKANMKKHFNRFHNIKICVYVCHFEN------------CGKAFKKHNQLKVHQFSHTQ 131
Query: 133 ERPYQCAH--CTYASPDTFKLKRHLRIHTG 160
+ PY+C H C +LKRH ++H G
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 112 ICDYASVELS-----KMRNHMRSHTGERPYQCAH--CTYASPDTFKLKRHLRIHTGEKPY 164
IC +A + K++ H+ HTGE+P+ C C L RH HTGEK +
Sbjct: 14 ICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNF 73
Query: 165 ACDI--CHARFTQSNSLKSH 182
CD C RFT ++K H
Sbjct: 74 TCDSDGCDLRFTTKANMKKH 93
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 139 AHCTYASPDTFKLKRHLRIHTGEKPYAC--DICHARFTQSNSLKSHRLIHT 187
A C A +KL+ HL HTGEKP+ C + C FT + L H L HT
Sbjct: 18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 68
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 112 ICDYAS-----VELSKMRNHMRSHTGERPYQCA--HCTYASPDTFKLKRHLRIHTGEKPY 164
CDYA + S ++ H+R+HTGE+PY C C + + +L RH R HTG +P+
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 165 ACDICHARFTQSNSLKSH 182
C C F++S+ L H
Sbjct: 67 QCQKCDRAFSRSDHLALH 84
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 39 SVCERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPELVR 96
+ C + + + L+ H+ THTG KP+ C + C +F S EL RH R
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR------------ 58
Query: 97 HVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 130
KHT +P +C CD A + HM+ H
Sbjct: 59 ----KHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 23 LARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELV 80
L HL++H+ E+P+ C C F L H HTG +P +C+ C+ F+ S L
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 81 RHVR 84
H++
Sbjct: 83 LHMK 86
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 20/99 (20%)
Query: 64 HKCKY--CESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSI--CDYASVE 119
H C Y C +T S L H+R HT EKP+ C C +
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLR----------------THTGEKPYHCDWDGCGWKFAR 49
Query: 120 LSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIH 158
++ H R HTG RP+QC C A + L H++ H
Sbjct: 50 SDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 58
L RH + H+ RP +C C+R F L H+ H
Sbjct: 53 LTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 112 ICDYAS-----VELSKMRNHMRSHTGERPYQCA--HCTYASPDTFKLKRHLRIHTGEKPY 164
CDYA + S ++ H+R+HTGE+PY C C + + +L RH R HTG +P+
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 67
Query: 165 ACDICHARFTQSNSLKSH 182
C C F++S+ L H
Sbjct: 68 QCQKCDRAFSRSDHLALH 85
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 39 SVCERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPELVR 96
+ C + + + L+ H+ THTG KP+ C + C +F S EL RH R
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR------------ 59
Query: 97 HVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 130
KHT +P +C CD A + HM+ H
Sbjct: 60 ----KHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIAS--LQNHINTHTGVKPHKCKYCESRFTTSGELV 80
L HL++H+ E+P+ C G+K S L H HTG +P +C+ C+ F+ S L
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 83
Query: 81 RHVR 84
H++
Sbjct: 84 LHMK 87
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 20/99 (20%)
Query: 64 HKCKY--CESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSI--CDYASVE 119
H C Y C +T S L H+R HT EKP+ C C +
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLR----------------THTGEKPYHCDWDGCGWKFAR 50
Query: 120 LSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIH 158
++ H R HTG RP+QC C A + L H++ H
Sbjct: 51 SDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 151 LKRHLRIHTGEKPYACDI--CHARFTQSNSLKSHRLIHT 187
LK HLR HTGEKPY CD C +F +S+ L H HT
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 58
L RH + H+ RP +C C+R F L H+ H
Sbjct: 54 LTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
E+PY C C A + L +H R+HTGEKPY C C F+Q++ L +H+ IHT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 28/55 (50%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHT 159
EKP+ C C A S + H R HTGE+PY+C C A L H RIHT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVR 84
E+P+ C C + F + L H HTG KP+KC C F+ + L+ H R
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 22 LLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHT 59
+L +H + H+ E+P+KC C + F + L NH HT
Sbjct: 29 ILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIH 186
+P+QC C + L H+R HTGEKP+ACDIC +F +S+ K HR I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKH 87
+P +C +C R F L HI THTG KP C C +F S E RH +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 16/53 (30%)
Query: 61 VKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSIC 113
+KP +C+ C F+ S L H+R HT EKP C IC
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRT----------------HTGEKPFACDIC 37
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 23 LARHLKSHSEERPHKCSVCERGF 45
L H+++H+ E+P C +C R F
Sbjct: 19 LTTHIRTHTGEKPFACDICGRKF 41
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
++PY+C C + L H +HTGEKPY C+IC A+F + +LK+H IH+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
+KP+KC C + + +H HTGE+PY+C C LK H RIH+GEKP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
++P+KC C+ F+ +L +H HTG KP++C C ++F L H R H+ EKP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HSGEKP 73
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
LA H H+ E+P++C++C F A+L+ H H+G KP
Sbjct: 33 LASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 112 ICDYASVELSKMRN---HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDI 168
IC + +K N H R+HT ERPY C C A L+ H IH+ EKP+ C
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Query: 169 CHARFTQSNSLKSHRLIH 186
C F QS +L H+ +H
Sbjct: 79 CGKGFCQSRTLAVHKTLH 96
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
++ + C C ++ L H R HT E+PY CDICH F + + L+ HR IH+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 21 YLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELV 80
Y L H ++H++ERP+ C +C + F+ L++H H+ KP KC+ C F S L
Sbjct: 31 YNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLA 90
Query: 81 RH 82
H
Sbjct: 91 VH 92
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 66 CKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRN 125
CK+C FT S L+ H R HT E+P+ C IC A +R+
Sbjct: 20 CKFCGRHFTKSYNLLIHER----------------THTDERPYTCDICHKAFRRQDHLRD 63
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIH 158
H H+ E+P++C C + L H +H
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 38 CSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
C C R F +L H THT +P+ C C F L H RY H+ EKP
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKP 73
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%)
Query: 25 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHV 83
RH+ H RP+ C VC + FK L H+ HTG+KP++C C RF RHV
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 113 CDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHL----RIHTGEKPYACDI 168
C + S+ HM H G RPY C C FK+K HL +IHTG KPY C+I
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCG----KKFKMKHHLVGHMKIHTGIKPYECNI 70
Query: 169 CHARFTQSNSLKSH 182
C RF +S H
Sbjct: 71 CAKRFMWRDSFHRH 84
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHTPL 189
+G++ Y C C + + RH+ +H G +PY C +C +F + L H IHT +
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 41 CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRY 100
C + F + H++ H G++P+ C C +F LV H++
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI--------------- 59
Query: 101 KHTHEKPHKCSIC 113
HT KP++C+IC
Sbjct: 60 -HTGIKPYECNIC 71
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 91 KPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCT 142
K + RH+ H +P+ C +C + HM+ HTG +PY+C C
Sbjct: 22 KSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA 72
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 16 RYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHT 59
++ + + L H+K H+ +P++C++C + F S H+ + T
Sbjct: 46 KFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCT 89
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
R Y+C C + + L +H R HTGEKPY CD C F Q + L H +HT
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 100 YKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHT 159
++ + +KC C + S + H R+HTGE+PY+C C A L H R+HT
Sbjct: 11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Query: 160 GEKP 163
G P
Sbjct: 71 GSGP 74
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 32 EERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEK 91
E R +KC C + F + L H THTG KP+KC C F L+ H R HT
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV-HTGSG 73
Query: 92 P 92
P
Sbjct: 74 P 74
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 64 HKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKM 123
+KC C F+ S +L +H R HT EKP+KC C A ++ S +
Sbjct: 19 YKCDECGKSFSHSSDLSKH----------------RRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 124 RNHMRSHTGERP 135
H R HTG P
Sbjct: 63 IGHHRVHTGSGP 74
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
L++H ++H+ E+P+KC C + F + L H HTG P
Sbjct: 34 LSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 14/125 (11%)
Query: 37 KCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVR 96
+C C + F + L+ H HTG KP +C C + L+ H ++ + E V
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-EARNCMNRSEQV- 66
Query: 97 HVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHL- 155
CS+C ++R HM SHTGE PY+C+ C+ L+ H+
Sbjct: 67 -----------FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Query: 156 RIHTG 160
++H+G
Sbjct: 116 KLHSG 120
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 101 KHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIH-- 158
KHT EKP +C C + H + R Q C+ +TF+ + LR+H
Sbjct: 29 KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQ-ETFRRRMELRLHMV 87
Query: 159 --TGEKPYACDICHARFTQSNSLKSHRL 184
TGE PY C C +F Q L+SH +
Sbjct: 88 SHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHV 83
E+ CSVC+ F+ L+ H+ +HTG P+KC C +F +L H+
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 123 MRNHMRSHTGERPYQC---AHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSL 179
++ H R HTGE+P++C C + + + + ++ E+ + C +C F + L
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL 82
Query: 180 KSHRLIHT 187
+ H + HT
Sbjct: 83 RLHMVSHT 90
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNH-INTHTG 60
L H+ SH+ E P+KCS C + F LQ+H I H+G
Sbjct: 82 LRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSH 182
+G +C C + LK H R HTGEKP+ C C + + +L H
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 134 RPYQCA--HCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
RPY C C + +L RH+RIHTG+KP+ C IC F++S+ L +H HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 34 RPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVR 84
RP+ C V C+R F L HI HTG KP +C+ C F+ S L H+R
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHT 59
L RH++ H+ ++P +C +C R F L HI THT
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 106 KPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHT 159
+P+ C + CD ++ H+R HTG++P+QC C + L H+R HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 18/73 (24%)
Query: 61 VKPHKC--KYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASV 118
++P+ C + C+ RF+ S EL RH+R HT +KP +C IC
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRI----------------HTGQKPFQCRICMRNFS 60
Query: 119 ELSKMRNHMRSHT 131
+ H+R+HT
Sbjct: 61 RSDHLTTHIRTHT 73
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 156 RIHTGEKPYACDICHARFTQSNSLKSHRL 184
R H+GEKPY C ICHARFTQS ++K H L
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHIL 36
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 15/66 (22%)
Query: 57 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE---------------KPELVRHVRYK 101
TH+G KP++C C +RFT SG + H+ KHT K +L H+R +
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Query: 102 HTHEKP 107
H++ P
Sbjct: 69 HSYSGP 74
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 28 KSHSEERPHKCSVCERGFKTIASLQNHI-NTHT-GVKPHKCKYCESRFTTSGELVRHVRY 85
++HS E+P++C +C F +++ HI HT V C +C++ +L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 86 KHTHEKP 92
+H++ P
Sbjct: 68 QHSYSGP 74
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 112 ICDYASVELS-----KMRNHMRSHTGERPYQCAH--CTYASPDTFKLKRHLRIHTGEKPY 164
IC +A + K++ H+ HTGE+P+ C C L RH HTGEK +
Sbjct: 5 ICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNF 64
Query: 165 ACDI--CHARFTQSNSLKSH 182
CD C RFT ++K H
Sbjct: 65 TCDSDGCDLRFTTKANMKKH 84
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 17 YHVMYLLARHLKSHSEERPHKC--SVCERGFKTIASLQNHINTHTGVKPHKCKY--CESR 72
Y+ + L HL H+ E+P C CE+GF ++ L H THTG K C C+ R
Sbjct: 15 YNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLR 74
Query: 73 FTTSGELVRHVRYKHT 88
FTT + +H H
Sbjct: 75 FTTKANMKKHFNRFHN 90
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 139 AHCTYASPDTFKLKRHLRIHTGEKPYAC--DICHARFTQSNSLKSHRLIHT 187
A C A +KL+ HL HTGEKP+ C + C FT + L H L HT
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 59
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 41 CERGFKTIASLQNHINTHTGVKPHKCK--YCESRFTTSGELVRHVRYKHTHEK 91
C + LQ H++ HTG KP CK CE FT+ L RH HT EK
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGEK 62
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 101 KHTHEKPHKC--SICDYASVELSKMRNHMRSHTGERPYQC 138
KHT EKP C C+ L + H +HTGE+ + C
Sbjct: 27 KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 66
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 110 CSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGE--KPYACD 167
C IC ++ + H SH+GE+PY C C ++ H+R H G KPY C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 168 ICHARFTQSNSLKSH 182
C F++ + L H
Sbjct: 70 SCGKGFSRPDHLNGH 84
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 17 YHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGV--KPHKCKYCESRFT 74
+ +Y L RH SHS E+P+ C VC FK + H+ +H G KP+ C+ C F+
Sbjct: 17 FRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS 76
Query: 75 TSGELVRHVRYKHT 88
L H++ H+
Sbjct: 77 RPDHLNGHIKQVHS 90
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSH 182
+G C C D + L RH H+GEKPY+C +C RF + + + H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 38 CSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVR 84
C +C + F+ + L H +H+G KP+ C C RF + HVR
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 38 CSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRH 97
C VC+R + + SL+ H N H+ K + C+YCE F + Y+ HE
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLA-------EYRTKHE------- 70
Query: 98 VRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERP 135
HT E+ ++C C + + M +H++S + P
Sbjct: 71 --IHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%)
Query: 110 CSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDIC 169
C +C + V L+ +R H H+ E+ Y C +C P +H HTGE+ Y C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 170 HARFTQSNSLKSH 182
F + SH
Sbjct: 85 GKSFINYQFMSSH 97
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
L RH HS E+ + C CE+ F H HTG + ++C C F + H
Sbjct: 38 LRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSH 97
Query: 83 VRYKHTHE 90
++ H+ +
Sbjct: 98 IKSVHSQD 105
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 23/56 (41%)
Query: 132 GERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
G Y C C + L+RH IH+ EK Y C C F + H + HT
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHT 74
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHC 141
H+ EK + C C+ H HTGER YQC C
Sbjct: 45 HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 118 VELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDI--CHARFTQ 175
++ S++R+H+ SH G C + S LK H R HTGEKP++C C RF +
Sbjct: 10 IDSSRIRSHICSHPG-----CGKTYFKSSH---LKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 176 SNSLKSHRLIH 186
S+ L HR H
Sbjct: 62 SDELSRHRRTH 72
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 34 RPHKCS--VCERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVR 84
R H CS C + + + L+ H THTG KP C + CE RF S EL RH R
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 113 CDYASVELSKMRNHMRSHTGERPYQCA--HCTYASPDTFKLKRHLRIH 158
C + S ++ H R+HTGE+P+ C+ C + +L RH R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 132 GERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSH 182
G +C++C + L HLR HTGEKPY C+ C Q SL+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 109 KCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIH 158
+CS C + H+R+HTGE+PY+C C YA+ L+ HL H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 37 KCSVCERGFKTIASLQNHINTHTGVKPHKCKYCE 70
+CS C + F++ L H+ THTG KP+KC++CE
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCE 39
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 60 GVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVE 119
G +C YC F ++ L H+R HT EKP+KC C+YA+ +
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLR----------------THTGEKPYKCEFCEYAAAQ 44
Query: 120 LSKMRNHMRSH 130
+ +R H+ H
Sbjct: 45 KTSLRYHLERH 55
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 21 YLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 58
Y L HL++H+ E+P+KC CE SL+ H+ H
Sbjct: 18 YYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY+C C A T KL RH RIHTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSG 42
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+KC+ C A + SK+ H R HTGE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+ C F+Q++ L H+ IHT
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHT 36
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC+ C + F + L H HTG KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP+KC C F+ + +L RH R HT EKP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRI-HTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 38 CSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYK 86
C C K + L+ HI THT V+P+ C YC F T G L +H++ K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 110 CSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLR 156
C C + S ++ H+R+HT RPY C +C ++ L +H++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 22 LLARHLKSHSEERPHKCSVCERGFKTIASLQNHINT 57
+L +H+++H++ RP+ C+ C FKT +L H+ +
Sbjct: 16 MLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 33.1 bits (74), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 136 YQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSH 182
Y C C LK+H+R HT +PY C C+ F +L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
+PYQC C A T KL RH R+HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 106 KPHKCSICDYASVELSKMRNHMRSHTGERP 135
KP++C+ C A + SK+ H R HTGE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP++C C F+ + +L RH R HT EKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRV-HTGEKP 40
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 162 KPYACDICHARFTQSNSLKSHRLIHT 187
KPY C+ C F+Q++ L H+ +HT
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHT 36
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTHTGVKP 63
+P++C+ C + F + L H HTG KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 136 YQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSH 182
+ C CT A LKRH R HT EKPY C +C+ FT+ + L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 38 CSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPE 93
C VC R F L+ H +HT KP+ C C FT L+RH + H+ E
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 110 CSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHL-RIHTG 160
C +C A ++ H RSHT E+PY C C A L RH +IH+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 23 LARHLKSHSEERPHKCSVCERGF 45
L RH +SH+ E+P+ C +C R F
Sbjct: 18 LKRHYRSHTNEKPYPCGLCNRAF 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
T EKP+ CD C F Q ++L SHR+IHT
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHT 36
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 29 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
S + E+P +C C++ F+ ++L +H HTG KP
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 103 THEKPHKCSICDYASVELSKMRNHMRSHTGERP 135
T EKP +C CD + + S + +H HTGE+P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 129 SHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
S T E+P++C C + L H IHTGEKP
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKPSG 42
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIH 158
E+P C+ C + S + H R+H G RP C C D ++ RHL++H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVR 84
ERP C+ C + ++ + L H H G +P C C F E+ RH++
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIH 186
ERP+ C C D L RH R H G +P +C C F + + H +H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 17 YHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTH 58
Y L+RH ++H RP C C + F+ + + H+ H
Sbjct: 14 YRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+ C ARF Q L++H LIHT
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHT 35
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+KC C V+++ +R H+ HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC C F +A L+ H+ HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY+C C L+ H+ IHTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 129 SHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
S + +PY+C C+YAS L HLR HTGEK
Sbjct: 3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 106 KPHKCSICDYASVELSKMRNHMRSHTGER 134
KP+KC C YAS + + H+R HTGE+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY+C C A L +H RIHTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP++C C A + + + H R HTGE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P++C C + F A+L H HTG KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C C F Q +L H+ IHT
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHT 36
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP++C C F L +H R HT EKP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRI-HTGEKP 40
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
+PY C HC D L+RH+RIHTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 61 VKPHKCKYCESRFTTSGELVRHVRYKHTHEK 91
+KP+ C +C+ +F G L RHVR HT EK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRI-HTGEK 30
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTHTGVK 62
+P+ C C+R F +LQ H+ HTG K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY+CA C A D L H +IHTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP++C+ C A + S + H + HTGE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P++C+ C + F ++L H HTG KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C C FT ++L +H+ IHT
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHT 36
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKPY C C FTQS+ L HR +HT
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHT 34
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTGE 161
+GE+PY C C A + L H R+HTGE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+P++C C A L HLRIHTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSG 42
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P KC C + F+ L +H+ HTG KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP KC C A + + +H+R HTGE+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP KCK C F + L H+R HT EKP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRI-HTGEKP 40
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKP+ C C F Q+ L SH IHT
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHT 36
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY C +C A + +L RH RIHTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP+ C YC F S ELVRH R HT EKP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRI-HTGEKP 40
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY CD C F S L H+ IHT
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHT 36
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+ C C + F A L H HTG KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+ C C A +++ H R HTGE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+P++CA C + + +L H RIHTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKPSG 42
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP +C+ C + S++ H R HTGE+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P +C+ C + F + L H HTG KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKP+ C C F+ S+ L +H+ IHT
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHT 36
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP +C C F+ S +L H R HT EKP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRI-HTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY+C C A T L +H R+HTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKPSG 42
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP++C C A + + + H R HTGE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C C F+Q+ L H+ +HT
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHT 36
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP++CK C F+ + L++H R HT EKP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRV-HTGEKP 40
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P++C C + F L H HTG KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
ERPY C C A D L +H +IHTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSG 42
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
E+P+ C++C A + S + H + HTGE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
ERP+ C+VC + F ++L H HTG KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
E+PY C +C FT ++L H+ IHT
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHT 36
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 128 RSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGE--------KPYACDICHARFTQSNSL 179
R+HTGE+PY C+HC TF+ K+ L +H + C C FT+ N++
Sbjct: 8 RTHTGEKPYACSHCD----KTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Query: 180 KSH 182
H
Sbjct: 64 ARH 66
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY CD+CH F +SL H+ IHT
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHT 36
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC VC + F+ +SL H HTG KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+KC +C + S + H R HTGE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY+C C + L H RIHTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.016, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+P+ C C A D L +H RIHTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 26.9 bits (58), Expect = 7.6, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP C C A + + H R HTGE+P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY C C A +L+ H RIHTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSG 42
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+ C C A + S+++ H R HTGE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+ C C + F + LQ H HTG KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+ C F + L+ H+ IHT
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHT 36
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+IC RF +LKSH IHT
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHT 35
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+ C +C F+ + +L++H+ HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+ C IC L +++H+R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY C C LK HLRIHTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKP+ C+ C RFTQ++ L SH+ +HT
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHT 36
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+P++C C +L H R+HTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSG 42
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP KC C + S++ +H R HTGE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP KC+ C RFT + +L H R HT EKP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRV-HTGEKP 40
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P KC C + F + L +H HTG KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P++C VC + F A L H THTG KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP++C +C A + + + H ++HTGE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY+C C+ A L +H + HTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C +C FTQ L H+ HT
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHT 36
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP++CK C FT L +H + HT EKP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKT-HTGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+KC+ C + S + NH R HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY+C C L H RIHTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSG 42
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+ C FTQ++ L +H IHT
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHT 36
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC+ C + F + L NH HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP+KC C FT + L H R HT EKP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRI-HTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY+C C F L H ++HTGE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC C +G+ + +L H HTG +P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+KC C + H + HTGERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 36 HKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEK 91
H C VC F + + + H+ + CKYC + F +S L RH+ H E
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN 84
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKP+ C+ C RFTQ++ L SH+ +HT
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHT 36
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+P+QC C L H R+HTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSG 42
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP +C C + S + +H R HTGE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP +C+ C RFT + L H R HT EKP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRV-HTGEKP 40
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P +C C + F + L +H HTG KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP++C C F + L+RH RY HT EKP
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLR-IHTGEKP 163
++PY+C C A L RH R HTGEKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEK 91
K ++C+YCE RF S L H++ KH+ EK
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY+C C L RH RIHTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+KC+ C S + H R HTGE+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC+ C + F+ + L H HTG KP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+ C F ++ L H+ IHT
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHT 36
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P +CS C++ F T ++L H THTG KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+P++C+ C A L H R HTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSG 42
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP +CS C A S + H R+HTGE+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP +C C+ F T L+ H R HT EKP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRT-HTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY C C + L RH RIHTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSG 42
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+ C F Q + L HR IHT
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHT 36
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+ C+ C + ++ S + H R HTGE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY+C C A D +H R+HTG++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSG 42
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+KC C A + S H R HTG+RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC C + F +S H HTG +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
+GE+PYQC C + L H R+HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKPY C C F+Q SL H +HT
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHT 34
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 59 TGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+G KP++CK C F+ G L H R HT P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERL-HTGSGP 38
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 31 SEERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
S E+P++C C + F SL H HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP++CSIC + + S++ H + HTGE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C IC FT+ + L H+ IHT
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHT 36
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY+C+ C + +L H +IHTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSG 42
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P++CS+C + F + L H HTG KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC+ C + F+ +SL H TH+G KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+KC+ C A S + H +H+GE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY+C C A L H H+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EK Y CD+C F+QS+ L++H+ +HT
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHT 36
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EK +KC +C + S ++ H R HTGE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+ +KC VC + F + LQ H HTG KP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+ Y+C C + L+ H R+HTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSG 42
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+P++C C + L +H R+HTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSG 42
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP KC C + + + H R HTGE+P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P KC C + + L H HTG KP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+ C FTQ++ L HR IHT
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHT 36
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY+C C L RH IHTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP+KC C FT + L RH R HT EKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARH-RGIHTGEKP 40
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+KC+ C + S + H HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC+ C + F + L H HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
E+PHKC+ C + ++ + + H R HTGE+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
ERP++C C + + L +H RIHTGEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSG 42
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
ERPHKC+ C + F A L H HTG KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+PHKC C F S L++H R HT EKP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRI-HTGEKP 40
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
E+P+ C+ C F QS L H+ IHT
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHT 36
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC+ C + F + L NH HTGVKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+ C FTQ++ L +H+ IHT
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHT 36
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+KC+ C + S + NH R HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY+C C L H RIHTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSG 42
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGER 134
EKP+KCS C + S++R H + HTGER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C C FT + L+ H+ HT
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHT 36
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
E+PY+C+ C + +L+ H + HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTG 60
E+P+KCS C + F + L+ H HTG
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTG 37
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGER 134
EKP+KCS C A S + H +SHTGER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTG 60
E+P+KCS C + F + L H +HTG
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C C FT+ + L H+ HT
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHT 36
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P++C VC + F ASL H H+G KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY CD+C F+ SL H+ +H+
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHS 36
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY+C C A L +H R+H+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP++C +C A + + H R H+GE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+ C FTQ++ L HR IHT
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHT 36
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY+C C L RH IHTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSG 42
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP+KC C FT + LVRH R HT EKP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRH-RGIHTGEKP 40
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+KC+ C + S + H HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC+ C + F + L H HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 162 KPYACDICHARFTQSNSLKSHRLIHTP 188
K + CD+C +F +LKSH+L+HT
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTA 34
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+ C FTQ++ L HR +HT
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHT 36
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY+C C L RH R+HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSG 42
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+KC+ C + S + H R HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC+ C + F + L H HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP+KC C FT + L RH R HT KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRV-HTGGKP 40
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 63 PHKCKYCESRFTTSGELVRHVRYKHTHEK 91
P KC+ C +FTTSG L RH+R H+ EK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRI-HSGEK 29
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 135 PYQCAHCTYASPDTFKLKRHLRIHTGEK 162
P +C C + LKRHLRIH+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKPY+C C F+ +N L H+ +HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHT 159
+GE+PY CA C D +L +H ++HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP++CS C + ++ S++ H R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY+C+ C + +L H RIHTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSG 42
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C C F + + L H+ IHT
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHT 36
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P++CS C + F + L H HTG P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
+RP++C C + FKT +SL H +HTG KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
+RPY+C C A L H R HTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKPSG 42
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
++P++C C A S + H RSHTGE+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 106 KPHKCSICDYASVELSKMRNHMRSHTGER 134
KP KCS+C+YA+ S ++ HM H+ E+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 29 SHSEERPHKCSVCERGFKTIASLQNHINTHT 59
S S +P KCS+CE ++ ++L+ H+N H+
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHS 33
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 129 SHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
S + +P++C+ C YA+ LK H+ H+ EK
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+ CS C A S + HMR+H+GE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY C+ C A L H+R H+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+ CS C + F + + L H+ TH+G KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
+G +PY C+ C A L H+R HTGEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 106 KPHKCSICDYASVELSKMRNHMRSHTGERP 135
KP+ CS C A S + HMR+HTGE+P
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 31 SEERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
S +P+ CS C + F++ + L H+ THTG KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 59 TGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+GVKP+ C C F + L+ H+R HT EKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMR-THTGEKP 38
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY+C C A L H+R+HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY CD C F+Q SL H +HT
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHT 35
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P++C C + F SL HI HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP++C C F+ G L+ H+R HT P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRV-HTGSGP 39
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP++C C A + + H+R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 67 KYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNH 126
K C+ F+T ELV HV +H PE HV Y + K Y K+ NH
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVG-GPEQNNHVCYWEECPREGKSFKAKY------KLVNH 81
Query: 127 MRSHTGER 134
+R HTGE+
Sbjct: 82 IRVHTGEK 89
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
ER Y+C+ C A L H RIHTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
ER ++CS C + F ++L H HTG KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKP+ CDIC F + L H ++HT
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHT 36
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP KC IC + S++ H HT E+P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+P++C C + +L RH +HT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSG 42
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P KC +C + F + L H HT KP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.30, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 31 SEERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
S E+P+ C+ C + F + L H HTGVKP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 31.2 bits (69), Expect = 0.33, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKPY+C+ C FT + L H+ +HT
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHT 34
Score = 29.6 bits (65), Expect = 0.97, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
+GE+PY C C A +L H +HTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
+KPY C+ C FTQ++ L HR IHT
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHT 36
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
++PY+C C L RH IHTGEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KP+KC C FT + L RH R HT EKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARH-RGIHTGEKP 40
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
+KP+KC+ C + S + H HTGE+P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 103 THEKPHKCSICDYASVELSKMRNHMRSHTGE 133
T EKP++CS C A + S++ H R+H+GE
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 129 SHTGERPYQCAHCTYASPDTFKLKRHLRIHTGE 161
S T E+PY+C+ C A +L H R H+GE
Sbjct: 6 SGTREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+ C F+ +SL +H+ IHT
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHT 36
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P++C+ C + F +SL H HTG KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY+C C A L H IHTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP++C+ C A S + H HTG++P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 0.35, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKPY C C FT + L H+ IHT
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 27.3 bits (59), Expect = 4.7, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 31 SEERPHKCSVCERGFKTIASLQNHINTHTGV 61
S E+P+ CS C + F + L H HTGV
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 27.3 bits (59), Expect = 5.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTG 160
+GE+PY C+ C A +L H IHTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E PY+C C A ++L H R H GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P++CSVC + F SL H H+G KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY+C+ C A L H RIH+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSG 42
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C +C F+ SL H+ IH+
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHS 36
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP++CS+C A + H R H+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC VC + F+ + L H + H+G +P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+KC +C A S + H H+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY+C C A + L +H +H+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C +C F S+ L H +H+
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHS 36
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
E+PY+C C L H R+HTGEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVK 62
E+P+KC C +G+K L H HTG K
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKPY C+ C F+ + L H+ IHT
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHT 34
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
+GE+PY C C L H RIHTGEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P KC C +GF T + +H +H+G KP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP KC C S+ +H RSH+GE+P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
++P++C HC + L H RIHTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTG 60
E+P++C+ C++ F T ++L H THTG
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGE 161
E+PY+C C A L H R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGE 133
EKP++C+ C A S + H R+HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+ C F ++L H+ HT
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHT 36
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+ C+ C + S + H R+HTGE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+ C F+Q + L +H+ HT
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHT 36
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY C C L H R HTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSG 42
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+ C+ C + F + L H THTG KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEK 91
K ++C+YCE R S L H++ KH+ EK
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKHSKEK 30
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY+C C L RH IHTGEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKPSG 42
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C C F +++ L H+LIHT
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHT 36
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC C + F+ + L H HTG KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC+ C + F+ ++L H HTG KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+PY+C C A L H IHTGEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSG 42
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+ C F ++L +H++IHT
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHT 36
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+KC+ C A S + H HTGE+P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
+PYQC+ C + +++L +H HT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|3PZ9|A Chain A, Native Structure Of Endo-1,4-Beta-D-Mannanase From
Thermotoga Petrophila Rku-1
pdb|3PZG|A Chain A, I222 Crystal Form Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1
pdb|3PZI|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Beta-D-Glucose
pdb|3PZM|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Three Glycerol Molecules
pdb|3PZN|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Citrate And Glycerol
pdb|3PZO|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Three Maltose Molecules
pdb|3PZQ|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Maltose And Glycerol
Length = 383
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 24/157 (15%)
Query: 8 WSDTTGYLRYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 67
W D G +Y + H + +ER + E K ++ L NH+N +TGV
Sbjct: 124 WDDFGGMNQYVRWFGGTHHDDFYRDER-----IKEEYKKYVSFLINHVNVYTGV-----P 173
Query: 68 YCESRFTTSGELVRHVRYKHTHEKPELVRHVR----YKHTHEKPHKCSICDYASVELSKM 123
Y E + EL +R + LV V+ Y + + H ++ D
Sbjct: 174 YREEPTIMAWELANELRCETDKSGNTLVEWVKEMSSYIKSLDPNHLVAVGD--------- 224
Query: 124 RNHMRSHTGERPYQC-AHCTYASPDTFKLKRHLRIHT 159
++ G +PY A Y K+ L I T
Sbjct: 225 EGFFSNYEGFKPYGGEAEWAYNGWSGVDWKKLLSIET 261
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+ Y+C C +L +H +IHTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSG 42
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EK +KC+ C S++ H + HTGE+P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
ER Y+C+ C A L H RIH GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKPSG 42
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
E+ ++CS C A ++ S + H R H GE+P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2ELN|A Chain A, Solution Structure Of The 11th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 38
Score = 30.4 bits (67), Expect = 0.68, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 141 CTYASPDTFKLKRHLRIHTG 160
C Y++PD +KL+ HL++HT
Sbjct: 17 CDYSTPDKYKLQAHLKVHTA 36
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 113 CDYASVELSKMRNHMRSHTGERPYQCAH--CTYASPDTFKLKRHLRIHTG 160
C A + ++++ H SHT + PY+C H C +LKRH ++H G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 41 CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVR 84
C + FK L+ H +HT P++C + C+ RF+ L RH +
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 54
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 150 KLKRHLRIHTGEKPYAC--DICHARFTQSNSLKSHRLIHT 187
+LK H HT + PY C + C RF+ + LK H +H
Sbjct: 18 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
+G++P C C + L +H RIH+GEKP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSG 40
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
+G+KP C+ C F QS+ L H+ IH+
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHS 34
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 113 CDYASVELSKMRNHMRSHTGERPYQCAH--CTYASPDTFKLKRHLRIHTG 160
C A + ++++ H SHT + PY+C H C +LKRH ++H G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 41 CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVR 84
C + FK L+ H +HT P++C + C+ RF+ L RH +
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 54
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 150 KLKRHLRIHTGEKPYAC--DICHARFTQSNSLKSHRLIHT 187
+LK H HT + PY C + C RF+ + LK H +H
Sbjct: 18 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTGE 161
+GE+PY+C C A +L H R HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 103 THEKPHKCSICDYASVELSKMRNHMRSHTGE 133
+ EKP++C+ C A S++ H R+HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIH 186
+GEKPY C C F LKS +IH
Sbjct: 6 SGEKPYECTDCGKAF----GLKSQLIIH 29
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P KC C +GF ++L H HTG KP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+P++C C L H ++HTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSG 42
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP KC C S + H + HTGE+P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY+C++C F S L H +HT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGE 133
EKP+ C++C A V + + H+R HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHT 59
E+P+ C+VC + F A L H+ HT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGE 161
E+PY C C A + L +HLR+HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 29 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVK 62
S ++E+P+KC C + F+T ++L H HTG K
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 129 SHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
S T E+PY+C C A L H IHTGEK
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
T EKPY C C F ++L +H++IHT
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHT 36
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEK 91
K ++C+YCE R S L H++ KH+ EK
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKHSKEK 30
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 162 KPYACDICHARFTQSNSLKSHRLIHT 187
KPY C+ C F+ +SL +H++IHT
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHT 36
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
+PY C C A L H IHTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTHTGVKP 63
+P+ C+ C + F +SL H HTG KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 KPHKCSICDYASVELSKMRNHMRSHTGER 134
KP +C +C A + S + H+R HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
+P QC C A L H+R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTHTGVK 62
+P +C +C + F +SL H+ HTG K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEK 91
K ++C+YCE R S L H++ KH+ EK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLRI-HTGEK 162
+ YQC +C + S D+ LK H++ H+ EK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY C C + L +H R+H+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+ C C + F+ + L H H+G KP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
E+ H+CS C ++ S H R HTGE+P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
ER H+CS C + F ++ H HTG KP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
ER ++C+ C +H RIHTGEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSG 42
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEK 91
K ++C+YCE R S L H++ KH+ EK
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSKEK 30
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLRI-HTGEK 162
+ YQC +C Y S D+ LK H++ H+ EK
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSKEK 30
>pdb|2L7X|A Chain A, Crimean Congo Hemorrhagic Fever Gn Zinc Finger
Length = 77
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 32 EERPHKCSVCERG-FKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHV 83
E +P C++CE I + + +N + C YC SR T+ G L RHV
Sbjct: 2 ELKPQTCTICETTPVNAIDAEMHDLNCSYNI----CPYCASRLTSDG-LARHV 49
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY CA C A L +H +IHT +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C C FT ++L H+ IHT
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHT 36
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
E+PY+C C L H R+H GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSH 130
EKP CS+C S + S M H+R+H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KC C +GF L H HTG KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C+ C F L +H ++HT
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHT 36
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 34 RPHKCSVCERGFKTIASLQNHI-NTHTGVKPHKCK 67
+P+ C C +GF L HI HT +PHKC+
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E+P++C C + +L H RIHTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENPSG 42
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKPH+C C + S++ H R HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
KPH+C+ C F+ + +L+ H R HT E P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRI-HTGENP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTHTGVKP 63
+P+ CS C + F + L H +HTGVKP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 61 VKPHKCKYCESRFTTSGELVRHVRYKHTHEKPE 93
VKP+ C C F+ +L+ H R HT KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPS 41
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 8/34 (23%)
Query: 134 RPYQCAHCTYASPDTFKLKRHL----RIHTGEKP 163
+PY C+ C TF LK L R HTG KP
Sbjct: 11 KPYGCSQCA----KTFSLKSQLIVHQRSHTGVKP 40
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 106 KPHKCSICDYASVELSKMRNHMRSHTGERP 135
KP+ CS C S++ H RSHTG +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTGE 161
+G++PY C C A +L H RIHTGE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 28.1 bits (61), Expect = 3.2, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
+G+KPY C+ C F + L H IHT
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHT 34
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
+G+R Y+C C + L H RIHTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
+G++ Y C C F Q SL H IHT
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHT 34
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 159 TGEKPYACDICHARFTQSNSLKSH 182
+GEKPY+C +C RF + + + H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYH 29
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 123 MRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGE 161
+R H R H +RP++C +C++ + L +H++ G+
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 61 VKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
V P+KC CE F+ L+ H R HT EKP
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRM-HTREKP 40
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 135 PYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
PY+C+ C + +L H R+HT EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKPSG 42
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 162 KPYACDICHARFTQSNSLKSHRLIHT 187
KP+ C C +F++S+ LK+H HT
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHT 26
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTHTGVK 62
+P +C C+R F L+ H THTG K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
+P+QC C + LK H R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
E+PY+C+ C A L H RIHTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+P+KCS C + F L H HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EKP+KCS C A + + H R HTG RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
EKPY C C F + L HR IHT
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHT 36
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 2.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTGE 161
+GE PY+C+ C A +L H R H GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 26.9 bits (58), Expect = 7.3, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIH 186
+GE PY C C F + + L SH+ H
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTH 33
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
+K + C+ C FTQS+SL H+ IHT
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHT 36
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 136 YQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
++C C + L H RIHTGEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSG 42
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 31 SEERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
S E+P CS CE+ F + + L H TH KP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIH 186
+GEKP+ C C F S KS+ L+H
Sbjct: 6 SGEKPFGCSCCEKAF----SSKSYLLVH 29
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 33 ERPHKCSVCERGFKTIASLQNH-INTHT-GVKPHKCKYCESRFTTSGELVRHVRYKH 87
E ++C VC R + I++ H + +H VK + C +C FT + HV+ H
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 162 KPYACDICHARFTQSNSLKSH 182
KPY C+ C RF QS+ L +H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRY 85
KP+ C+ C RF S +L H+R+
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRH 24
>pdb|2KVG|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 35 PHKCSVCERGFKTIASLQNHINTHT 59
P++C +C G ++AS+Q H+ H+
Sbjct: 3 PYRCPLCRAGCPSLASMQAHMRGHS 27
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHT 131
P++C +C L+ M+ HMR H+
Sbjct: 1 AAPYRCPLCRAGCPSLASMQAHMRGHS 27
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 162 KPYACDICHARFTQSNSLKSHRLIHT 187
+PY+C +C RF+ + +++H +HT
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTHTG 60
RP+ CSVC + F ++ H HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERP 135
EK KC CD + S +R H H GE+P
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKP 63
E+ KC C+ F +SL+ H N H G KP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 38 CSVCERGFKTIASLQNHI--NTHTGVKPHKCKYCESRFTTSGELVRHVRYKH 87
C +C F + SL+ HI HT V C C+ FT++ + HV KH
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEHTKV----CPVCKKEFTSTDSALDHVCKKH 124
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 161 EKPYACDICHARFTQSNSLKSH 182
+KPYACDIC R+ L H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH 26
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGER 134
+KP++C C +++ + H R HTGER
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
++PY+C C L +H R+HTGE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
+KPY C C F Q L H+ +HT
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHT 36
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTHTGVKP 63
+ H+C C RGF + L H HTG KP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
+ +QC C L +H RIHTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSG 42
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTGE 161
+GE+PY C C A H RIHTGE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKPY C C F + + +H IHT
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHT 34
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 164 YACDICHARFTQSNSLKSH 182
Y C++C+ARF+ ++L H
Sbjct: 117 YVCNVCNARFSTMSALSEH 135
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 164 YACDICHARFTQSNSLKSH 182
Y C++C+ARF+ ++L H
Sbjct: 99 YVCNVCNARFSTMSALSEH 117
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHT 59
ERP KC+ C +GF + L H+ H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
ERP++C C L HLR+H+ EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 161 EKPYACDI--CHARFTQSNSLKSHRLIHT 187
EKP+AC C RF++S+ L HR H+
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHS 38
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain
From Arabidopsis Thaliana Superman Protein
Length = 39
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTH 58
R + CS C+R F++ +L H+N H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 136 YQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
++C C A L H +IHTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSG 42
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 133 ERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
E P+ C+ C L H +IHTGE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPSG 42
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYK 86
+P+ C YC F T G L +H++ K
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKHMKSK 25
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
+GE+ ++C+ C +L H RIHTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENPSG 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 129 SHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
S T E P++C C + L +H IH GE P
Sbjct: 6 SGTKEHPFKCNECGKTFSHSAHLSKHQLIHAGENPSG 42
>pdb|1JJ2|Y Chain Y, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|Y Chain Y, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|1 Chain 1, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|1 Chain 1, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|1 Chain 1, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|1 Chain 1, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|1 Chain 1, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|1 Chain 1, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|1 Chain 1, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|1 Chain 1, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|1 Chain 1, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|1 Chain 1, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|1 Chain 1, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|1 Chain 1, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|1 Chain 1, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|Y Chain Y, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|Y Chain Y, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1W2B|Y Chain Y, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|3CXC|Y Chain Y, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
pdb|3OW2|Y Chain Y, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 73
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 95 VRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTY 143
VR + H+K HKC +C + ++ R+ TG + C HC Y
Sbjct: 15 VRVADVEIKHKKKHKCPVCGFKKLK--------RAGTG--IWMCGHCGY 53
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHT 159
+G+RP+ C C A RHL++HT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
+G++P+ C IC + FT + H +HT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
>pdb|3H7J|A Chain A, Crystal Structure Of Bacb, An Enzyme Involved In
Bacilysin Synthesis, In Monoclinic Form
pdb|3H7J|B Chain B, Crystal Structure Of Bacb, An Enzyme Involved In
Bacilysin Synthesis, In Monoclinic Form
pdb|3H7Y|A Chain A, Crystal Structure Of Bacb, An Enzyme Involved In
Bacilysin Synthesis, In Tetragonal Form
pdb|3H7Y|B Chain B, Crystal Structure Of Bacb, An Enzyme Involved In
Bacilysin Synthesis, In Tetragonal Form
Length = 243
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 51 LQNHINTHTGVKPHKCKYCESRFTTSGELVRHV 83
L +++ HT V+PH+ K + SGEL+ V
Sbjct: 37 LMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV 69
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 131 TGERPYQCAHCTYASPDTFKLKRHLRIHT---GEKPYACDICHARFTQSNSLKSHR 183
+G QC C + L H R H + C+ C RF + +S+ +HR
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.133 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,048,738
Number of Sequences: 62578
Number of extensions: 230305
Number of successful extensions: 1696
Number of sequences better than 100.0: 208
Number of HSP's better than 100.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 937
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)