RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9067
(189 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 34.3 bits (79), Expect = 0.002
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 151 LKRHLRIHTGEKPYACDICHARFTQ 175
L+RH+R HTGEKPY C +C F+
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 32.0 bits (73), Expect = 0.011
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 50 SLQNHINTHTGVKPHKCKYCESRFTT 75
+L+ H+ THTG KP+KC C F++
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 30.4 bits (69), Expect = 0.038
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 123 MRNHMRSHTGERPYQCAHCTYA 144
+R HMR+HTGE+PY+C C +
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKS 23
Score = 29.7 bits (67), Expect = 0.070
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKT 47
L RH+++H+ E+P+KC VC + F +
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 34.7 bits (79), Expect = 0.022
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 105 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
KP+KC + C+ + ++ HM H + ++ +K
Sbjct: 347 GKPYKCPVEGCNKKYKNQNGLKYHMLH---------GHQNQKLHENPSPEKMNIFSAKDK 397
Query: 163 PYACDICHARFTQSNSLKSHR 183
PY C++C R+ N LK HR
Sbjct: 398 PYRCEVCDKRYKNLNGLKYHR 418
Score = 29.7 bits (66), Expect = 0.94
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 160 GEKPYACDI--CHARFTQSNSLKSHRL 184
KPY C + C+ ++ N LK H L
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHML 372
Score = 28.1 bits (62), Expect = 3.0
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 60 GVKPHKCKY--CESRFTTSGELVRHVRYKH----THEKPELVRHVRYKHTHEKPHKCSIC 113
KP+KC C ++ L H+ + H HE P + + +KP++C +C
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFS-AKDKPYRCEVC 404
Query: 114 DYASVELSKMRNHMRSHT 131
D L+ ++ H R H+
Sbjct: 405 DKRYKNLNGLKYH-RKHS 421
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 33.5 bits (76), Expect = 0.058
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTH 89
RP C C F + L HI +HTG KP +C Y C+ F+ EL RH+R H +
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNN 89
Score = 29.3 bits (65), Expect = 1.3
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLI 185
RP C +CT + L RH+R HTGEKP C + S L+ R +
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHL 83
Score = 28.5 bits (63), Expect = 2.1
Identities = 43/184 (23%), Positives = 67/184 (36%), Gaps = 20/184 (10%)
Query: 9 SDTTGYLRYHVMYLLARHLKS--HSEE--RPHKC--SVCERGFKTIASLQNHINTHTGVK 62
+ + L RHL+S HS E +P C S+C + F +L+ HI HT +
Sbjct: 291 KSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSIS 350
Query: 63 PHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKC--SICDYASVEL 120
P K K S S L + +P ++K + + C
Sbjct: 351 PAKEKLLNSSSKFSPLL---------NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRD 401
Query: 121 SKMRNHMRSHTGERPYQC--AHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNS 178
S + H+ +H RPY C C+ + + L H +IHT F +
Sbjct: 402 SNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT-NHAPLLCSILKSFRRDLD 460
Query: 179 LKSH 182
L +H
Sbjct: 461 LSNH 464
Score = 28.5 bits (63), Expect = 2.5
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Query: 104 HEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYAS--PDTFKLKRHLRIHTGE 161
+P C C + L + H+RSHTGE+P QC++ +L RHLR H
Sbjct: 30 APRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNN 89
Query: 162 KPYACDICHARFTQSNS 178
S
Sbjct: 90 PSDLNSKSLPLSNSKAS 106
Score = 28.1 bits (62), Expect = 3.2
Identities = 26/134 (19%), Positives = 38/134 (28%), Gaps = 21/134 (15%)
Query: 14 YLRYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGV-------KPHKC 66
L S + S R AS Q+ + P K
Sbjct: 233 SQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKS 292
Query: 67 KYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKC--SICDYASVELSKMR 124
K C F+ S L RH+R + + KP C S+C ++
Sbjct: 293 KQCNISFSRSSPLTRHLRSVNHSGES------------LKPFSCPYSLCGKLFSRNDALK 340
Query: 125 NHMRSHTGERPYQC 138
H+ HT P +
Sbjct: 341 RHILLHTSISPAKE 354
Score = 27.4 bits (60), Expect = 4.8
Identities = 36/163 (22%), Positives = 56/163 (34%), Gaps = 19/163 (11%)
Query: 35 PHKCSVCERGFKTIASLQNHINT--HTG--VKPHKCKY--CESRFTTSGELVRHVRYKHT 88
P K C F + L H+ + H+G +KP C Y C F+ + L RH+ HT
Sbjct: 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHIL-LHT 347
Query: 89 H--EKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASP 146
E + + K + ++ +L + C
Sbjct: 348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNS--------CIRNFK 399
Query: 147 DTFKLKRHLRIHTGEKPYACD--ICHARFTQSNSLKSHRLIHT 187
L H+ H +PY C C F + +L H+ IHT
Sbjct: 400 RDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT 442
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 32.2 bits (73), Expect = 0.068
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 35 PHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKH 87
P+ C +C F + SL+ HI K C C F + + HV KH
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDHVCKKH 123
>gnl|CDD|149172 pfam07948, Nairovirus_M, Nairovirus M polyprotein-like. The
sequences in this family are similar to the Dugbe virus
M polyprotein precursor, which includes glycoproteins G1
and G2. Both are thought to be inserted in the membrane
of the Golgi complex of the infected host cell, and G1
is known to have a role in infection of vertebrate
hosts.
Length = 645
Score = 32.5 bits (74), Expect = 0.12
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 13 GYLRYHVMYLLA---RHLKSHSEERPHKCSVCERGFKTIASLQNH-INTHTGVKPHKCKY 68
+ ++++ ++ + LK + E +P C+ CE+ + H +N + C Y
Sbjct: 469 CKVLFYLLIVIGTLGKKLKQYRELKPQTCTKCEQTPVNAIDAEMHDLNCSYNI----CPY 524
Query: 69 CESRFTTSGELVRHV 83
C SR T+ G LVRHV
Sbjct: 525 CASRLTSEG-LVRHV 538
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 32.4 bits (74), Expect = 0.12
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 11/46 (23%)
Query: 8 WSDTTGYLRYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQN 53
WS G++R +Y +ARH++ H R F + SL N
Sbjct: 75 WSALPGHVRARHLYRIARHIQKHQ-----------RLFAVLESLDN 109
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus,
particularly the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 28.3 bits (64), Expect = 0.26
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 35 PHKCSVCERGFKTIASLQNHINTHTGVKPHK 65
C C++ FK+ +L+NH+ + K HK
Sbjct: 1 QFYCVACDKYFKSENALENHLKS----KKHK 27
>gnl|CDD|236691 PRK10426, PRK10426, alpha-glucosidase; Provisional.
Length = 635
Score = 30.7 bits (70), Expect = 0.45
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 127 MRSHTGERPYQCAHCTYASPDTFK-LKRHLRIHTGEKPY 164
MR+H G RP + +T R R+ T KPY
Sbjct: 489 MRTHEGNRPGDN-WQFDSDAETIAHFARMTRVFTTLKPY 526
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 30.4 bits (68), Expect = 0.65
Identities = 27/117 (23%), Positives = 37/117 (31%), Gaps = 24/117 (20%)
Query: 46 KTIASLQNHINTHTGVKPH-KCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTH 104
T+ +N G K H C +C+ F EL RH R + H
Sbjct: 202 STLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLR-----------------H 244
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCT------YASPDTFKLKRHL 155
E H C + + K + +H Y C T Y P +L HL
Sbjct: 245 EACHICDMVGPIRYQYFKSYEDLEAHFRNAHYCCTFQTCRVGKCYVFPYHTELLEHL 301
>gnl|CDD|218986 pfam06317, Arena_RNA_pol, Arenavirus RNA polymerase. This family
consists of several Arenavirus RNA polymerase proteins
(EC:2.7.7.48).
Length = 2206
Score = 30.4 bits (69), Expect = 0.72
Identities = 14/46 (30%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 42 ERGFKTIASLQNHINTHTGVKPHKCK------YCESRFTTSGELVR 81
GF I S+ + I T VK CK YC E R
Sbjct: 1628 NGGFLYIKSILSKIMTCDHVKCEICKPGPGVWYCRKALEEVSEFSR 1673
>gnl|CDD|153106 cd01047, ACSF, Aerobic Cyclase System Fe-containing subunit (ACSF),
ferritin-like diiron-binding domain. Aerobic Cyclase
System, Fe-containing subunit (ACSF) is a member of a
broad superfamily of ferritin-like diiron-carboxylate
proteins. Rubrivivax gelatinosus acsF codes for a
conserved, putative binuclear iron-cluster-containing
protein involved in aerobic oxidative cyclization of
Mg-protoporphyrin IX monomethyl ester. AcsF and homologs
have a leucine zipper and two copies of the conserved
glutamate and histidine residues predicted to act as
ligands for iron in the Ex(29-35)DExRH motifs. Several
homologs of AcsF are found in a wide range of
photosynthetic organisms, including Chlamydomonas
reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting
that this aerobic oxidative cyclization mechanism is
conserved from bacteria to plants.
Length = 323
Score = 30.0 bits (68), Expect = 0.77
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 7 YWSDTTGYLRYHVMYLLARHLKSHSEERPH 36
Y S+ GY RY +Y RHL+ + E + H
Sbjct: 149 YLSEKIGYWRYITIY---RHLERNPENQFH 175
>gnl|CDD|237458 PRK13654, PRK13654, magnesium-protoporphyrin IX monomethyl ester
cyclase; Provisional.
Length = 355
Score = 28.7 bits (65), Expect = 2.0
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 7 YWSDTTGYLRYHVMYLLARHLKSHSEERPH 36
Y S+ GY RY +Y RHL+ H E R H
Sbjct: 169 YLSEKIGYWRYITIY---RHLEKHPEHRFH 195
>gnl|CDD|131084 TIGR02029, AcsF, magnesium-protoporphyrin IX monomethyl ester
aerobic oxidative cyclase. This model respresents the
oxidative cyclase responsible for forming the
distinctive E-ring of the chlorin ring system under
aerobic conditions. This enzyme is believed to utilize a
binuclear iron center and molecular oxygen. There are
two isoforms of this enzyme in some plants and
cyanobacterai which are differentially regulated based
on the levels of copper and oxygen. This step is
essential in the biosynthesis of both
bacteriochlorophyll and chlorophyll under aerobic
conditions (a separate enzyme, BchE, acts under
anaerobic conditions). This enzyme is found in plants,
cyanobacteria and other photosynthetic bacteria
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 337
Score = 28.2 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 7 YWSDTTGYLRYHVMYLLARHLKSHSEERPH 36
Y S+ GY RY +Y RHL+ + E + +
Sbjct: 159 YLSEKIGYWRYITIY---RHLEENPENQFY 185
>gnl|CDD|168629 PRK06617, PRK06617, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 374
Score = 28.0 bits (62), Expect = 3.2
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 6/34 (17%)
Query: 109 KCS---ICDYASVELSKMRNHMRSHTGERPYQCA 139
KC+ ICD A+ SK+R+H ++ E+PYQ A
Sbjct: 148 KCNLLIICDGAN---SKVRSHYFANEIEKPYQTA 178
>gnl|CDD|233819 TIGR02307, RNA_lig_RNL2, RNA ligase, Rnl2 family. Members of this
family ligate (seal breaks in) RNA. Members so far
include phage proteins that can counteract a host
defense of cleavage of specific tRNA molecules,
trypanosome ligases involved in RNA editing, but no
prokaryotic host proteins [Mobile and extrachromosomal
element functions, Prophage functions, Transcription,
RNA processing].
Length = 325
Score = 27.5 bits (61), Expect = 4.8
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 67 KYCESRFTTSGELVRHVRY-KHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRN 125
Y T G +V+H R K + + EK +K A V LS+ +N
Sbjct: 182 NYPLEGNTAEGYVVKHCRPGKWLRNGNRTIIKCKNSKFSEKKNKAGKPILAKVVLSEAQN 241
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of
the virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA
plus-strand. lambda1 is an Orthoreovirus core protein,
VP3 is the homologous core protein in Aquareoviruses.
Length = 1166
Score = 27.4 bits (61), Expect = 5.0
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 48 IASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKH 87
I+ Q+ T + C C + F++ +L H R H
Sbjct: 58 ISPPQSKKATPINPSSYVCNVCMAEFSSMDQLAEHQRTTH 97
>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins.
Length = 509
Score = 27.2 bits (61), Expect = 5.9
Identities = 13/74 (17%), Positives = 19/74 (25%), Gaps = 14/74 (18%)
Query: 78 ELVRHVRYKHTHEKPE-------------LVRHVRYKHTHEKPHKCSI-CDYASVELSKM 123
EL +HV H + PE L +++ Y KP D +
Sbjct: 394 ELAKHVVDLHRYSHPEEDEAFEPPLSQEKLRKYIAYAREKIKPKLSEEAADKLVKAYVDL 453
Query: 124 RNHMRSHTGERPYQ 137
R
Sbjct: 454 RKEDSQTESRSSIP 467
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 24.3 bits (53), Expect = 6.5
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 36 HKCSVCERGFKTIASLQNHINTH 58
++C C + FK+ ++L+ H+ TH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|177087 CHL00185, ycf59, magnesium-protoporphyrin IX monomethyl ester
cyclase; Provisional.
Length = 351
Score = 27.0 bits (60), Expect = 6.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 7 YWSDTTGYLRYHVMYLLARHLKSHSEER 34
Y S+ GY RY +Y RHL+ + E R
Sbjct: 165 YLSEKIGYWRYITIY---RHLEKNPEYR 189
>gnl|CDD|224413 COG1496, yfiH, Multicopper polyphenol oxidase (laccase) [Secondary
metabolites biosynthesis, transport and catabolism].
Length = 249
Score = 26.9 bits (60), Expect = 7.0
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 136 YQCAHCTYASPDTFKLKRHLRIHTG 160
Y CTY + F R TG
Sbjct: 215 YGSGRCTYTEEELFFSYRRDDGTTG 239
>gnl|CDD|173359 PTZ00064, PTZ00064, histone acetyltransferase; Provisional.
Length = 552
Score = 26.9 bits (59), Expect = 8.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 64 HKCKYCESRFTTSGELVRHVR 84
H C+YC F EL+RH+
Sbjct: 281 HFCEYCLDFFCFEDELIRHLS 301
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.133 0.437
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,994,450
Number of extensions: 737013
Number of successful extensions: 1021
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1008
Number of HSP's successfully gapped: 86
Length of query: 189
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 98
Effective length of database: 6,901,388
Effective search space: 676336024
Effective search space used: 676336024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.4 bits)