RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9067
(189 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 127 bits (321), Expect = 2e-37
Identities = 61/165 (36%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
LA H ++H+ E+P+KC C + F L H THTG KP+KC C F+ L H
Sbjct: 37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Query: 83 VRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCT 142
R HT EKP+ C C + +L+ +R H R+HTGE+PY+C C
Sbjct: 97 QR----------------THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 143 YASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+ L H R HTGEKPY C C F++ ++L H+ HT
Sbjct: 141 KSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 126 bits (320), Expect = 2e-37
Identities = 57/165 (34%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
E+P+ C C + F L H THTG KP+KC C F+ +L RH
Sbjct: 9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
Query: 83 VRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCT 142
R HT EKP+KC C + + + +R H R+HTGE+PY C C
Sbjct: 69 QR----------------THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECG 112
Query: 143 YASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+ L+ H R HTGEKPY C C F++ ++L +H+ HT
Sbjct: 113 KSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT 157
Score = 107 bits (271), Expect = 6e-30
Identities = 48/138 (34%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 50 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHK 109
S G KP+ C C F+ S L H R HT EKP+K
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRT----------------HTGEKPYK 51
Query: 110 CSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDIC 169
C C + + + H R+HTGE+PY+C C + L+ H R HTGEKPYAC C
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Query: 170 HARFTQSNSLKSHRLIHT 187
F+Q L++H+ HT
Sbjct: 112 GKSFSQLAHLRAHQRTHT 129
Score = 105 bits (266), Expect = 3e-29
Identities = 50/141 (35%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
L RH ++H+ E+P+KC C + F A+L+ H THTG KP+ C C F+ L H
Sbjct: 65 LTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Query: 83 VRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCT 142
R HT EKP+KC C + + H R+HTGE+PY+C C
Sbjct: 125 QR----------------THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG 168
Query: 143 YASPDTFKLKRHLRIHTGEKP 163
+ L H R HTG+K
Sbjct: 169 KSFSRRDALNVHQRTHTGKKT 189
Score = 71.7 bits (177), Expect = 4e-16
Identities = 24/67 (35%), Positives = 29/67 (43%)
Query: 121 SKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLK 180
S GE+PY C C + + L H R HTGEKPY C C F+ L
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 181 SHRLIHT 187
H+ HT
Sbjct: 67 RHQRTHT 73
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 111 bits (279), Expect = 1e-31
Identities = 52/170 (30%), Positives = 74/170 (43%), Gaps = 31/170 (18%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINT---HTGVKPHKCKYCESR-----FTTSGELVRHVR 84
E + C + F + L +HIN+ H K C + F LV H+R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 85 YKHTHEKPELVRHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAH-- 140
+HT EKPHKC+ C + L ++ H+RSHTGE+PY C H
Sbjct: 61 ----------------RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEG 104
Query: 141 CTYASPDTFKLKRH-LRIHTGEKPYACDI--CHARFTQSNSLKSHRLIHT 187
C+ A + +H R H+ EKPY C + C R+T +SL+ H
Sbjct: 105 CSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 67.2 bits (165), Expect = 9e-15
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 21/118 (17%)
Query: 21 YLLARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTS 76
Y+L H++ H+ E+PHKC+ C + + + +L+ H+ +HTG KP+ C++ C F+ +
Sbjct: 53 YMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNA 112
Query: 77 GELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSHTG 132
+ +H R H++EKP+ C + C + S +R H+++ G
Sbjct: 113 SDRAKH--------------QNR-THSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 106 bits (266), Expect = 9e-30
Identities = 45/151 (29%), Positives = 60/151 (39%), Gaps = 11/151 (7%)
Query: 41 CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRY 100
+ I + K C+ F+T ELV HV PE HV
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHV-- 59
Query: 101 KHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH--CTYASPDTFKLKRHLRIH 158
+C + K+ NH+R HTGE+P+ C C + LK H R H
Sbjct: 60 ----CYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Query: 159 TGEKPYACDI--CHARFTQSNSLKSHRLIHT 187
TGEKP+ C+ C RF S+ K H +HT
Sbjct: 116 TGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Score = 100 bits (250), Expect = 2e-27
Identities = 34/156 (21%), Positives = 53/156 (33%), Gaps = 29/156 (18%)
Query: 25 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHK---------CKYCESRFTT 75
+ C+R F T+ L H+ P + C F
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA 74
Query: 76 SGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSHTGE 133
+LV H+R HT EKP C C ++ H R+HTGE
Sbjct: 75 KYKLVNHIR----------------VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
Query: 134 RPYQCAH--CTYASPDTFKLKRHLRIHTGEKPYACD 167
+P++C C ++ K+H+ +HT +K
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 74.6 bits (184), Expect = 1e-17
Identities = 37/135 (27%), Positives = 46/135 (34%), Gaps = 29/135 (21%)
Query: 17 YHVMYLLARHLKSHSEERPHK---------CSVCERGFKTIASLQNHINTHTGVKPHKCK 67
+ M+ L H+ P + C + FK L NHI HTG KP C
Sbjct: 35 FSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCP 94
Query: 68 Y--CESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSI--CDYASVELSKM 123
+ C F S L H R HT EKP KC CD S
Sbjct: 95 FPGCGKIFARSENLKIHKR----------------THTGEKPFKCEFEGCDRRFANSSDR 138
Query: 124 RNHMRSHTGERPYQC 138
+ HM HT ++
Sbjct: 139 KKHMHVHTSDKSGPS 153
Score = 46.5 bits (111), Expect = 4e-07
Identities = 5/49 (10%), Positives = 12/49 (24%)
Query: 139 AHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+ + I + C F+ + L +H +
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 104 bits (261), Expect = 1e-28
Identities = 48/174 (27%), Positives = 63/174 (36%), Gaps = 28/174 (16%)
Query: 26 HLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVR 81
+ + CS C + LQ H+ HTG KP CK CE FT+ L R
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 82 HVRYKHTHEKPELVRHVRYKHTHEKPHKCS--ICDYASVELSKMRNHMRSHTGER--PYQ 137
H HT EK C CD + M+ H + Y
Sbjct: 63 HSLT----------------HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYV 106
Query: 138 C--AHCTYASPDTFKLKRHLRIHTGEKPYAC--DICHARFTQSNSLKSHRLIHT 187
C +C A +LK H HT + PY C + C RF+ + LK H +H
Sbjct: 107 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
Score = 66.5 bits (163), Expect = 4e-14
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 125 NHMRSHTGERPYQC--AHCTYASPDTFKLKRHLRIHTGEKPYACD--ICHARFTQSNSLK 180
+ Y C A C A +KL+ HL HTGEKP+ C C FT + L
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 181 SHRLIHT 187
H L HT
Sbjct: 62 RHSLTHT 68
Score = 46.4 bits (111), Expect = 6e-07
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 23 LARHLKSHSEERPHKCS--VCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELV 80
L H SH+++ P++C C++ F + L+ H H G K C T +
Sbjct: 122 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYL 181
Query: 81 RHVRYKHT 88
+HV H
Sbjct: 182 KHVAECHQ 189
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 98.0 bits (245), Expect = 7e-27
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 14/134 (10%)
Query: 30 HSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTH 89
S +C C + F + L+ H HTG KP +C C + L+ H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM- 60
Query: 90 EKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTF 149
+ E+ CS+C ++R HM SHTGE PY+C+ C+
Sbjct: 61 ------------NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKK 108
Query: 150 KLKRH-LRIHTGEK 162
L+ H +++H+G
Sbjct: 109 DLQSHMIKLHSGPS 122
Score = 98.0 bits (245), Expect = 7e-27
Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 20/134 (14%)
Query: 58 HTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYAS 117
+G +C C +F + L H R KHT EKP +C C
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNR----------------KHTGEKPFECPKCGKCY 45
Query: 118 VELSKMRNHMRS---HTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFT 174
+ H + E+ + C+ C +L+ H+ HTGE PY C C +F
Sbjct: 46 FRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFM 105
Query: 175 QSNSLKSHRL-IHT 187
Q L+SH + +H+
Sbjct: 106 QKKDLQSHMIKLHS 119
Score = 67.9 bits (167), Expect = 2e-15
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 20/116 (17%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNH---INTHTGVKPHKCKYCESRFTTSGEL 79
L H + H+ E+P +C C + + +L H + + C C+ F EL
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL 82
Query: 80 VRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHM-RSHTGER 134
H+ HT E P+KCS C ++ +++HM + H+G
Sbjct: 83 RLHMV----------------SHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 96.7 bits (242), Expect = 8e-27
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 16/110 (14%)
Query: 57 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYA 116
+ PHKC+ C F+ +L H+R HT KP+KC CDYA
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRC----------------HTGVKPYKCKTCDYA 45
Query: 117 SVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ + S + H+R H+ ERP++C C YAS ++ +L HLR HTG+ +
Sbjct: 46 AADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 96.0 bits (240), Expect = 2e-26
Identities = 35/86 (40%), Positives = 47/86 (54%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGE 161
PHKC +C K++ HMR HTG +PY+C C YA+ D+ L +HLRIH+ E
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 162 KPYACDICHARFTQSNSLKSHRLIHT 187
+P+ C IC S+ L H HT
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHT 88
Score = 92.1 bits (230), Expect = 5e-25
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 16/111 (14%)
Query: 29 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHT 88
S PHKC VC + F L+ H+ HTGVKP+KCK C+ S L +H+R
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR---- 57
Query: 89 HEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCA 139
H+ E+P KC IC YAS S++ H+RSHTG+
Sbjct: 58 ------------IHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSSG 96
Score = 62.8 bits (154), Expect = 1e-13
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
L H++ H+ +P+KC C+ +SL H+ H+ +P KC+ C S +L H
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Query: 83 VRYKHTHEKP 92
+R HT +
Sbjct: 84 LR-SHTGDSG 92
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 97.2 bits (243), Expect = 9e-27
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 59 TGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSI--CD 114
+ +P C Y C R+ L H R KHT EKP++C C+
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSR----------------KHTGEKPYQCDFKDCE 45
Query: 115 YASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDI--CHAR 172
+++ H R HTG +P+QC C + LK H R HTGEKP++C C +
Sbjct: 46 RRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKK 105
Query: 173 FTQSNSLKSHRLIH 186
F +S+ L H +H
Sbjct: 106 FARSDELVRHHNMH 119
Score = 86.0 bits (214), Expect = 2e-22
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 22/132 (16%)
Query: 33 ERPHKCS--VCERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHT 88
+RP C+ C + + ++ LQ H HTG KP++C + CE RF+ S +L RH R
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR---- 59
Query: 89 HEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC--AHCTYASP 146
+HT KP +C C ++ H R+HTGE+P+ C C
Sbjct: 60 ------------RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107
Query: 147 DTFKLKRHLRIH 158
+ +L RH +H
Sbjct: 108 RSDELVRHHNMH 119
Score = 83.7 bits (208), Expect = 2e-21
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 103 THEKPHKCS--ICDYASVELSKMRNHMRSHTGERPYQC--AHCTYASPDTFKLKRHLRIH 158
+ ++P C+ C+ +LS ++ H R HTGE+PYQC C + +LKRH R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
TG KP+ C C +F++S+ LK+H HT
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
Score = 67.9 bits (167), Expect = 2e-15
Identities = 35/112 (31%), Positives = 47/112 (41%), Gaps = 20/112 (17%)
Query: 23 LARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELV 80
L H + H+ E+P++C CER F L+ H HTGVKP +CK C+ +F+ S L
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 81 RHVRYKHTHEKPELVRHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSH 130
H R HT EKP C C ++ H H
Sbjct: 84 THTR----------------THTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 94.5 bits (236), Expect = 2e-25
Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 25/133 (18%)
Query: 62 KPHKCKY--CESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTH-EKPHKCSICDYASV 118
+ C + C F + + +H+ TH + H C+ C A V
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLH------------------THGPRVHVCAECGKAFV 45
Query: 119 ELSKMRNHMRSHTGERPYQCAH--CTYASPDTFKLKRHLRIHTGEKPYACDI--CHARFT 174
E SK++ H HTGE+P+QC C F L+ H+RIHTG++PY C C+ +F
Sbjct: 46 ESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFA 105
Query: 175 QSNSLKSHRLIHT 187
QS +LKSH L H
Sbjct: 106 QSTNLKSHILTHA 118
Score = 91.8 bits (229), Expect = 1e-24
Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 23/139 (16%)
Query: 32 EERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTH 89
E R C C + F+ ++++ H++TH G + H C C F S +L RH
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLV---- 56
Query: 90 EKPELVRHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAH--CTYAS 145
HT EKP +C+ C +R H+R HTG+RPY C C
Sbjct: 57 ------------HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKF 104
Query: 146 PDTFKLKRHLRIHTGEKPY 164
+ LK H+ H K
Sbjct: 105 AQSTNLKSHILTHAKAKNN 123
Score = 76.8 bits (190), Expect = 1e-18
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 21/119 (17%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELV 80
+ +HL +H R H C+ C + F + L+ H HTG KP +C + C RF+ L
Sbjct: 23 MRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
Query: 81 RHVRYKHTHEKPELVRHVRYKHTHEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQ 137
HVR HT ++P+ C C+ + + +++H+ +H + Q
Sbjct: 82 THVR----------------IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 29.4 bits (67), Expect = 0.29
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 161 EKPYACDI--CHARFTQSNSLKSHRLIH 186
+ AC C F +++++ H H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH 30
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 89.1 bits (222), Expect = 6e-24
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 105 EKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
E+P+ C + CD + + H+R HTG++P+QC C + L H+R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 163 PYACDICHARFTQSNSLKSHRLIHT 187
P+ACDIC +F +S+ K H IH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 74.8 bits (185), Expect = 2e-18
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 62 KPHKCKY--CESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVE 119
+P+ C C+ RF+ SG L RH+R HT +KP +C IC
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI----------------HTGQKPFQCRICMRNFSR 46
Query: 120 LSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
+ H+R+HTGE+P+ C C + + KRH +IH +K
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 72.5 bits (179), Expect = 2e-17
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 18/104 (17%)
Query: 33 ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHE 90
ERP+ C V C+R F SL HI HTG KP +C+ C F+ S L H+R
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR------ 55
Query: 91 KPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 134
HT EKP C IC + + H + H ++
Sbjct: 56 ----------THTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 62.9 bits (154), Expect = 9e-14
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
L RH++ H+ ++P +C +C R F L HI THTG KP C C +F S E RH
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 83 VRYKHTHEK 91
+ H +K
Sbjct: 82 TK-IHLRQK 89
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 87.5 bits (218), Expect = 4e-23
Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 16/117 (13%)
Query: 50 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHK 109
K CK+C FT S L+ H R HT E+P+
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERT----------------HTDERPYT 47
Query: 110 CSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
C IC A +R+H H+ E+P++C C + L H +H
Sbjct: 48 CDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 85.9 bits (214), Expect = 2e-22
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 94 LVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKR 153
+K C C + + H R+HT ERPY C C A L+
Sbjct: 5 SSGGRLP-SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
H IH+ EKP+ C C F QS +L H+ +H
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Score = 79.4 bits (197), Expect = 6e-20
Identities = 24/116 (20%), Positives = 33/116 (28%), Gaps = 16/116 (13%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
+ ++ C C R F +L H THT +P+ C C F L H
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Query: 83 VRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
H+ EKP KC C + + H H
Sbjct: 65 RYI----------------HSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 75.2 bits (186), Expect = 3e-18
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 121 SKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLK 180
S ++ + C C ++ L H R HT E+PY CDICH F + + L+
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Query: 181 SHRLIHT 187
HR IH+
Sbjct: 63 DHRYIHS 69
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 87.1 bits (217), Expect = 7e-23
Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 23/127 (18%)
Query: 57 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYA 116
+G K + C+ C FT + RH+ H +P+ C +C
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSM----------------HLGLRPYGCGVCGKK 46
Query: 117 SVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHL--RIHTGEKPYACDICHARFT 174
+ HM+ HTG +PY+C C F + + + K Y T
Sbjct: 47 FKMKHHLVGHMKIHTGIKPYECNICAKR----FMWRDSFHRHVTSCTKSYEAAKAEQNTT 102
Query: 175 QSNSLKS 181
+++ S
Sbjct: 103 EASGPSS 109
Score = 80.6 bits (200), Expect = 3e-20
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGE 161
+ +K + C C + S+ HM H G RPY C C L H++IHTG
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 162 KPYACDICHARFTQSNSLKSHRLIHT 187
KPY C+IC RF +S HR + +
Sbjct: 64 KPYECNICAKRFMWRDSF--HRHVTS 87
Score = 65.9 bits (162), Expect = 1e-14
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 127 MRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIH 186
+G++ Y C C + + RH+ +H G +PY C +C +F + L H IH
Sbjct: 2 SSGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 187 T 187
T
Sbjct: 61 T 61
Score = 62.1 bits (152), Expect = 3e-13
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 18/91 (19%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
RH+ H RP+ C VC + FK L H+ HTG+KP++C C RF RH
Sbjct: 25 RDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Query: 83 VRYKHTHEKPELVRHVRYKHTHEKPHKCSIC 113
V + K ++ +
Sbjct: 85 V------------------TSCTKSYEAAKA 97
Score = 46.7 bits (112), Expect = 2e-07
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGEL 79
L H+K H+ +P++C++C + F S H+ + K ++ E T +
Sbjct: 53 LVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASGP 107
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 81.1 bits (201), Expect = 1e-20
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 102 HTHEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAH--CTYASPDTFKLKRHLRI 157
+ H C C + S ++ H+R+HTGE+PY+C C + + +L RH R
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 158 HTGEKPYACDICHARFTQSNSLKSHRLIHT 187
HTG KP+ C +C+ F++S+ L H H
Sbjct: 70 HTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 65.0 bits (159), Expect = 2e-14
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 20/106 (18%)
Query: 30 HSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRY 85
+ R H C C + + + L+ H+ THTG KP+KC + C+ RF S EL RH R
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR- 68
Query: 86 KHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHT 131
KHT KP +C +C+ + + HM+ H
Sbjct: 69 ---------------KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 54.6 bits (132), Expect = 2e-10
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 23 LARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELV 80
L HL++H+ E+P+KC+ C+ F L H HTG KP +C C F+ S L
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 81 RHVRYKHT 88
H++ +H
Sbjct: 93 LHMK-RHQ 99
Score = 54.2 bits (131), Expect = 2e-10
Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 121 SKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDI--CHARFTQSNS 178
R H + P CT + LK HLR HTGEKPY C C RF +S+
Sbjct: 7 GPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDE 62
Query: 179 LKSHRLIHT 187
L H HT
Sbjct: 63 LTRHYRKHT 71
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 79.5 bits (197), Expect = 3e-20
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 101 KHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH--CTYASPDTFKLKRHLRIH 158
K T + C + S ++ H+R+HTGE+PY C C + + +L RH R H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIH 186
TG +P+ C C F++S+ L H H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 59.5 bits (145), Expect = 2e-12
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 18/103 (17%)
Query: 30 HSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKH 87
+ + C + + + L+ H+ THTG KP+ C + C +F S EL RH R
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR--- 58
Query: 88 THEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 130
KHT +P +C CD A + HM+ H
Sbjct: 59 -------------KHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 57.5 bits (140), Expect = 9e-12
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 130 HTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDI--CHARFTQSNSLKSHRLIHT 187
T A C + LK HLR HTGEKPY CD C +F +S+ L H HT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Score = 51.8 bits (125), Expect = 1e-09
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 23 LARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELV 80
L HL++H+ E+P+ C C F L H HTG +P +C+ C+ F+ S L
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 81 RHVR 84
H++
Sbjct: 83 LHMK 86
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 79.5 bits (197), Expect = 5e-20
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGE 161
+ C IC ++ + H SH+GE+PY C C ++ H+R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 162 --KPYACDICHARFTQSNSLKSH-RLIHT 187
KPY C C F++ + L H + +H+
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 69.8 bits (172), Expect = 2e-16
Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 19/108 (17%)
Query: 58 HTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYAS 117
+G C+ C F L RH H+ EKP+ C +C
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS----------------HSGEKPYSCPVCGLRF 45
Query: 118 VELSKMRNHMRSHTGE--RPYQCAHCTYASPDTFKLKRHL-RIHTGEK 162
+M H+RSH G +PY C C L H+ ++H+G
Sbjct: 46 KRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 60.6 bits (148), Expect = 8e-13
Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 15/106 (14%)
Query: 30 HSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTH 89
S C +C + F+ + L H +H+G KP+ C C RF + HVR H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDG 60
Query: 90 EKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHM-RSHTGER 134
KP+ C C + H+ + H+G
Sbjct: 61 SVG-------------KPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 58.3 bits (142), Expect = 6e-12
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTG--VKPHKCKYCESRFTTSGELV 80
L RH SHS E+P+ C VC FK + H+ +H G KP+ C+ C F+ L
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN 82
Query: 81 RHVRYKHTHEK 91
H++ H+
Sbjct: 83 GHIKQVHSGPS 93
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 78.3 bits (194), Expect = 7e-20
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 101 KHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTG 160
+ P KCS C Y+ + +R H R H +RP++C +C++ + L +H++ G
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 161 EKPYAC 166
+
Sbjct: 63 DMSGPS 68
Score = 75.6 bits (187), Expect = 6e-19
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 128 RSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
S + P +C+ C+Y+ L+ H RIH ++P+ C+ C Q ++L H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 65.2 bits (160), Expect = 6e-15
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 16/83 (19%)
Query: 57 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYA 116
+ + P KC C ++ L H R H ++P KC+ C +
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHER----------------IHCTDRPFKCNYCSFD 46
Query: 117 SVELSKMRNHMRSHTGERPYQCA 139
+ + S + HM+ G+ +
Sbjct: 47 TKQPSNLSKHMKKFHGDMSGPSS 69
Score = 60.6 bits (148), Expect = 4e-13
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 29 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHT 88
S S P KCS C + A+L+ H H +P KC YC L +H++ K
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK-KFH 61
Query: 89 HEKP 92
+
Sbjct: 62 GDMS 65
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
L H + H +RP KC+ C K ++L H+ G
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 76.4 bits (189), Expect = 6e-19
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 106 KPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
KP +C IC + H+R+HTGE+P+ C C + + KRH I P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPIL 60
Query: 166 CDICHARFTQSNSLKSHRL---IHT 187
D +++ L++
Sbjct: 61 EDKVEELLSKNYHLENEVARLKKLV 85
Score = 68.3 bits (168), Expect = 8e-16
Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 20/105 (19%)
Query: 61 VKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVEL 120
+KP +C+ C F+ S L H+R HT EKP C IC
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIR----------------THTGEKPFACDICGRKFARS 44
Query: 121 SKMRNHMRSHTGERPYQCAHCTYA---SPDTFKLKRHLRIHTGEK 162
+ + H P + L+ GE+
Sbjct: 45 DERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 67.9 bits (167), Expect = 1e-15
Identities = 27/104 (25%), Positives = 35/104 (33%), Gaps = 20/104 (19%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPE 93
+P +C +C R F L HI THTG KP C C +F S E RH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD---IQ---- 54
Query: 94 LVRHVRYKHTHEKPHKCSICDYA---SVELSKMRNHMRSHTGER 134
H P + + L ++ GER
Sbjct: 55 ----------HILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 54.0 bits (131), Expect = 2e-10
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
L H+++H+ E+P C +C R F + H + P E + + L
Sbjct: 19 LTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENE 77
Query: 83 VRYKHTH 89
V
Sbjct: 78 VARLKKL 84
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 73.3 bits (181), Expect = 6e-18
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 122 KMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGE--KPYACDICHARFTQSNSL 179
+ R+H+GE+PY+C C + +K H+ E + C C + + L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 180 KSH-RLIHT 187
H R H+
Sbjct: 62 GVHLRKQHS 70
Score = 70.6 bits (174), Expect = 7e-17
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTG--VKPHKCKYCESRFTTSGELV 80
++HS E+P++C +C F +++ HI V C +C++ +L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 81 RHVRYKHTHEKP 92
H+R +H++ P
Sbjct: 63 VHLRKQHSYSGP 74
Score = 67.9 bits (167), Expect = 7e-16
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 50 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHK 109
S + TH+G KP++C C +RFT SG + H+ + E
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QKHTEN-------------VAKFH 47
Query: 110 CSICDYASVELSKMRNHMRS-HTGERPY 136
C CD S + H+R H+ P
Sbjct: 48 CPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 66.8 bits (164), Expect = 2e-15
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 94 LVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGE--RPYQCAHCTYASPDTFKL 151
R H+ EKP++C IC + M+ H+ E + C HC L
Sbjct: 3 SGSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 152 KRHLR-IHTGEKPYA 165
HLR H+ P +
Sbjct: 62 GVHLRKQHSYSGPSS 76
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 72.9 bits (180), Expect = 9e-18
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 121 SKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLK 180
+H ++PY+C C + L H +HTGEKPY C+IC A+F + +LK
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 181 SHRLIHT 187
+H IH+
Sbjct: 63 THTRIHS 69
Score = 67.9 bits (167), Expect = 8e-16
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 94 LVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKR 153
H +KP+KC C + + +H HTGE+PY+C C LK
Sbjct: 5 HHHHSHM-THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 154 HLRIHTGEKPY 164
H RIH+GEKPY
Sbjct: 64 HTRIHSGEKPY 74
Score = 61.3 bits (150), Expect = 2e-13
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 16/87 (18%)
Query: 50 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHK 109
+H + KP+KC C++ F G L H HT EKP++
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV----------------HTGEKPYR 47
Query: 110 CSICDYASVELSKMRNHMRSHTGERPY 136
C+IC + ++ H R H+GE+PY
Sbjct: 48 CNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 59.4 bits (145), Expect = 1e-12
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
H ++P+KC C+ F+ +L +H HTG KP++C C ++F L H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 83 VRYKHTHEKP 92
R H+ EKP
Sbjct: 65 TR-IHSGEKP 73
Score = 38.6 bits (91), Expect = 7e-05
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPH 64
LA H H+ E+P++C++C F A+L+ H H+G KP+
Sbjct: 33 LASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 72.8 bits (180), Expect = 1e-17
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 109 KCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDI 168
C IC + S + H+ H+ RPY C +C +K+H IHTGEKP+ C +
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 169 CHARFTQSNSLKSHRLIHT 187
C F+QS++L +H HT
Sbjct: 63 CGKAFSQSSNLITHSRKHT 81
Score = 57.8 bits (141), Expect = 5e-12
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
Query: 37 KCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVR 96
C +C + FK ++L H+ H+ +P+ C+YC RF ++ +H
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI----------- 51
Query: 97 HVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTG 132
HT EKPHKC +C A + S + H R HTG
Sbjct: 52 -----HTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 57.0 bits (139), Expect = 1e-11
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 65 KCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMR 124
CK C F S L H+ H+ +P+ C C + S M+
Sbjct: 3 DCKICGKSFKRSSTLSTHLL----------------IHSDTRPYPCQYCGKRFHQKSDMK 46
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTG 160
H HTGE+P++C C A + L H R HTG
Sbjct: 47 KHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 54.7 bits (133), Expect = 1e-10
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
L+ HL HS+ RP+ C C + F + ++ H HTG KPHKC+ C F+ S L+ H
Sbjct: 17 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Query: 83 VRYKHT 88
R KHT
Sbjct: 77 SR-KHT 81
Score = 54.0 bits (131), Expect = 2e-10
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 136 YQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+ C C + + L HL IH+ +PY C C RF Q + +K H IHT
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT 53
Score = 35.1 bits (82), Expect = 0.002
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTG 60
+ +H H+ E+PHKC VC + F ++L H HTG
Sbjct: 45 MKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 69.8 bits (172), Expect = 1e-16
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLI 185
H+GE+PY C C A + L +H R+HTGEKPY C C F+Q++ L +H+ I
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Query: 186 HT 187
HT
Sbjct: 65 HT 66
Score = 69.0 bits (170), Expect = 2e-16
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 94 LVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKR 153
H+ EKP+ C C A S + H R HTGE+PY+C C A L
Sbjct: 2 SSGSSGI-HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 154 HLRIHTGEKPYA 165
H RIHT
Sbjct: 61 HQRIHTSGPSSG 72
Score = 56.7 bits (138), Expect = 1e-11
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
+ HS E+P+ C C + F + L H HTG KP+KC C F+ + L+ H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 83 VRYKHTHEKP 92
R HT
Sbjct: 62 QRI-HTSGPS 70
Score = 49.0 bits (118), Expect = 9e-09
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 151 LKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
IH+GEKPY C C F++S+ L H+ +HT
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHT 38
Score = 38.2 bits (90), Expect = 9e-05
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPH 64
L +H + H+ E+P+KC C + F + L NH HT
Sbjct: 30 LVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 69.8 bits (172), Expect = 1e-16
Identities = 23/67 (34%), Positives = 29/67 (43%)
Query: 121 SKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLK 180
R Y+C C + + L +H R HTGEKPY CD C F Q + L
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI 63
Query: 181 SHRLIHT 187
H +HT
Sbjct: 64 GHHRVHT 70
Score = 66.7 bits (164), Expect = 2e-15
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 94 LVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKR 153
R + + +KC C + S + H R+HTGE+PY+C C A L
Sbjct: 6 SGRSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 154 HLRIHTGEKPY 164
H R+HTG P
Sbjct: 65 HHRVHTGSGPS 75
Score = 59.4 bits (145), Expect = 1e-12
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
R E R +KC C + F + L H THTG KP+KC C F L+ H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 83 VRYKHTHEKP 92
R HT P
Sbjct: 66 HR-VHTGSGP 74
Score = 56.7 bits (138), Expect = 1e-11
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 50 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHK 109
S + +KC C F+ S +L +H R HT EKP+K
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT----------------HTGEKPYK 48
Query: 110 CSICDYASVELSKMRNHMRSHTGERPY 136
C C A ++ S + H R HTG P
Sbjct: 49 CDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 39.0 bits (92), Expect = 6e-05
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHK 65
L++H ++H+ E+P+KC C + F + L H HTG P
Sbjct: 34 LSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 69.0 bits (169), Expect = 4e-16
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 130 HTGERPYQCAHCTYASPDTFKLKRHLRIHT---GEKPYACDICHARFTQSNSLKSHRLIH 186
+G QC C + L H R H + C+ C RF + +S+ +HR
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 187 TP 188
P
Sbjct: 62 HP 63
Score = 61.7 bits (150), Expect = 2e-13
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 30 HSEERPHKCSVCERGFKTIASLQNHINTHT---GVKPHKCKYCESRFTTSGELVRHVRYK 86
S +C +C + ASL H H C++C RF + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 87 HTHEKPE 93
H
Sbjct: 62 HPALLLA 68
Score = 55.9 bits (135), Expect = 3e-11
Identities = 11/84 (13%), Positives = 16/84 (19%), Gaps = 13/84 (15%)
Query: 58 HTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYAS 117
+G +C+ C L H R KH C C
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR-KHAETVAA------------LRFPCEFCGKRF 48
Query: 118 VELSKMRNHMRSHTGERPYQCAHC 141
+ + H
Sbjct: 49 EKPDSVAAHRSKSHPALLLAPQES 72
Score = 35.1 bits (81), Expect = 0.002
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 23 LARHLKSHSE---ERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 67
L H + H+E C C + F+ S+ H + +
Sbjct: 23 LNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ 70
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 68.7 bits (169), Expect = 4e-16
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 12/92 (13%)
Query: 50 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHK 109
S + THTG KP+ C +C+ F L H + ++ +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK-RYHDP-----------NFVPAAFV 49
Query: 110 CSICDYASVELSKMRNHMRSHTGERPYQCAHC 141
CS C + M H + G + +
Sbjct: 50 CSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 67.9 bits (167), Expect = 1e-15
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 5/80 (6%)
Query: 94 LVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGE----RPYQCAHCTYASPDTF 149
R HT EKP+ CS CD + + H + + + C+ C
Sbjct: 3 SGSSGRT-HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 150 KLKRHLRIHTGEKPYACDIC 169
+ RH G +
Sbjct: 62 TMARHADNCAGPDGVEGENS 81
Score = 67.9 bits (167), Expect = 1e-15
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 124 RNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGE----KPYACDICHARFTQSNSL 179
+ R+HTGE+PY C+HC L H + + + C C FT+ N++
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Query: 180 KSHRLIHT 187
H
Sbjct: 64 ARHADNCA 71
Score = 56.8 bits (138), Expect = 2e-11
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 20/95 (21%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTG----VKPHKCKYCESRFTTSGE 78
++H+ E+P+ CS C++ F+ L H + C C FT
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 79 LVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSIC 113
+ RH +
Sbjct: 63 MARHAD----------------NCAGPDGVEGENS 81
Score = 51.0 bits (123), Expect = 3e-09
Identities = 15/37 (40%), Positives = 16/37 (43%)
Query: 151 LKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
R HTGEKPYAC C F Q L H +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 67.2 bits (165), Expect = 2e-15
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 102 HTHEKPHKCSI--CDYASVELSKMRNHMR-SHTGERPYQCAH--CTYASPDTFKLKRHLR 156
+ C C + +H + H ++ + C C + LK H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 157 IHTGEKPYACDIC 169
+H+ + Y C+
Sbjct: 62 LHSDTRDYICEFS 74
Score = 63.0 bits (154), Expect = 6e-14
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 19/88 (21%)
Query: 58 HTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS--IC 113
+G C + C F+ L H +Y+H H+K C C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH---------------IHQKSFSCPEPAC 46
Query: 114 DYASVELSKMRNHMRSHTGERPYQCAHC 141
+ ++ HM+ H+ R Y C
Sbjct: 47 GKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 58.7 bits (143), Expect = 3e-12
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 130 HTGERPYQCAH--CTYASPDTFKLKRHLRI-HTGEKPYACD--ICHARFTQSNSLKSHRL 184
+G C C + L H + H +K ++C C F LK H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 185 IHT 187
+H+
Sbjct: 62 LHS 64
Score = 51.8 bits (125), Expect = 1e-09
Identities = 16/89 (17%), Positives = 22/89 (24%), Gaps = 21/89 (23%)
Query: 30 HSEERPHKCSV--CERGFKTIASLQNHI-NTHTGVKPHKCKY--CESRFTTSGELVRHVR 84
S C C R F L +H H K C C F L H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 85 YKHTHEKPELVRHVRYKHTHEKPHKCSIC 113
H+ + + C
Sbjct: 62 ----------------LHSDTRDYICEFS 74
Score = 43.7 bits (104), Expect = 1e-06
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 23 LARHLK-SHSEERPHKCS--VCERGFKTIASLQNHINTHTGVKPHKCKYC 69
L H K H ++ C C + F L+ H+ H+ + + C++
Sbjct: 25 LNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 26.7 bits (60), Expect = 1.5
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 23 LARHLKSHSEERPHKCSVCERGF 45
L H+K HS+ R + C
Sbjct: 56 LKEHMKLHSDTRDYICEFSGPSS 78
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 64.9 bits (159), Expect = 8e-15
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 128 RSHTGERPYQCAHCTYASPDTFKLKRHLRI--HTGEKPYACDICHARFTQSNSLKSHRLI 185
+ GE Y+C C+ RH K Y C C FT+ +++ +H I
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 186 HTPL 189
+
Sbjct: 63 IHKI 66
Score = 56.8 bits (138), Expect = 1e-11
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 30 HSEERPHKCSVCERGFKTIASLQNH--INTHTGVKPHKCKYCESRFTTSGELVRHVRYKH 87
E ++C VC R + I++ H + VK + C +C FT + HV+ H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 53.7 bits (130), Expect = 1e-10
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 14/76 (18%)
Query: 57 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYA 116
T G ++CK C +T RH H + K + C C
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSH--------------KRNVKVYPCPFCFKE 49
Query: 117 SVELSKMRNHMRSHTG 132
M H++
Sbjct: 50 FTRKDNMTAHVKIIHK 65
Score = 34.1 bits (79), Expect = 0.003
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 23 LARHLKS--HSEERPHKCSVCERGFKTIASLQNHINTHTGV 61
RH + + + C C + F ++ H+ +
Sbjct: 26 FCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 61.9 bits (151), Expect = 1e-13
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 120 LSKMRNHMRSHTGERPYQCAH--CTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSN 177
++ + N++ RPY C C + +L RH+RIHTG+KP+ C IC F++S+
Sbjct: 6 MNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 178 SLKSHRLIHT 187
L +H HT
Sbjct: 64 HLTTHIRTHT 73
Score = 51.2 bits (123), Expect = 1e-09
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 26 HLKSHSE--ERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVR 81
+L ++ RP+ C V C+R F L HI HTG KP +C+ C F+ S L
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 82 HVRYKHT 88
H+R HT
Sbjct: 68 HIR-THT 73
Score = 45.4 bits (108), Expect = 2e-07
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 18/77 (23%)
Query: 57 THTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICD 114
++P+ C C+ RF+ S EL RH+R HT +KP +C IC
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIR----------------IHTGQKPFQCRICM 56
Query: 115 YASVELSKMRNHMRSHT 131
+ H+R+HT
Sbjct: 57 RNFSRSDHLTTHIRTHT 73
Score = 36.1 bits (84), Expect = 6e-04
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHT 59
L RH++ H+ ++P +C +C R F L HI THT
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 56.9 bits (138), Expect = 1e-11
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 121 SKMRNHMRSHTGERPYQCAH--CTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNS 178
++++ H SHT + PY+C H C +LKRH ++H G D C
Sbjct: 17 NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL 76
Query: 179 LKSHR 183
H
Sbjct: 77 YLKHV 81
Score = 51.1 bits (123), Expect = 2e-09
Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 19/99 (19%)
Query: 36 HKCSV--CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEK 91
+ C C + FK L+ H +HT P++C + C+ RF+ L RH + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 60
Query: 92 PELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 130
+K CS K H
Sbjct: 61 C------------KKDDSCSFVGKTWTLYLKH--VAECH 85
Score = 51.1 bits (123), Expect = 3e-09
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 23 LARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELV 80
L H SH+++ P++C C++ F + L+ H H G K C T +
Sbjct: 19 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYL 78
Query: 81 RHVRYKH 87
+HV H
Sbjct: 79 KHVAECH 85
Score = 47.6 bits (114), Expect = 4e-08
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 151 LKRHLRIHTGEKPYACD--ICHARFTQSNSLKSHRLIHT 187
LK H HT + PY C C RF+ + LK H +H
Sbjct: 19 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 2e-11
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TGE+ Y C C + L +H R+H+GEKP
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 46.4 bits (111), Expect = 5e-08
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEK Y C C F+++ L H +H+
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS 36
Score = 41.0 bits (97), Expect = 6e-06
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EK + C C + + H R H+GE+P
Sbjct: 7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG K + CK C F+ + L++H R H+ EKP S
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERL----------------HSGEKPSGPS 44
Score = 39.8 bits (94), Expect = 2e-05
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+ + C C + F L H H+G KP
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-11
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TGE+PY CA C A L +H +IHT +KP
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 45.6 bits (109), Expect = 1e-07
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C C FT ++L H+ IHT
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHT 36
Score = 42.9 bits (102), Expect = 1e-06
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP+ C+ C A S + H + HT ++P +
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 41.0 bits (97), Expect = 6e-06
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG KP+ C C FT L++H + HT +KP S
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI----------------HTKQKPSGPS 44
Score = 40.2 bits (95), Expect = 1e-05
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+ C+ C + F ++L H HT KP
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 55.9 bits (135), Expect = 3e-11
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 121 SKMRNHMRSHTGERPYQCAH--CTYASPDTFKLKRHLRIHTGEKPYACDI--CHARFTQS 176
S + R + C+H C + LK H R HTGEKP++C C RF +S
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 177 NSLKSHRLIH 186
+ L HR H
Sbjct: 63 DELSRHRRTH 72
Score = 52.4 bits (126), Expect = 5e-10
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 23 LARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKCKY--CESRFTTSGE 78
+ S R H CS C + + + L+ H THTG KP C + CE RF S E
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 79 LVRHVR 84
L RH R
Sbjct: 65 LSRHRR 70
Score = 44.3 bits (105), Expect = 6e-07
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 101 KHTHEKPHKCSI--CDYASVELSKMRNHMRSHTGERPYQCAH--CTYASPDTFKLKRHLR 156
+ + H CS C + S ++ H R+HTGE+P+ C+ C + +L RH R
Sbjct: 11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Query: 157 IH 158
H
Sbjct: 71 TH 72
Score = 35.8 bits (83), Expect = 8e-04
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 20/86 (23%)
Query: 49 ASLQNHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEK 106
+ + ++ H C + C + S L H R HT EK
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR----------------THTGEK 46
Query: 107 PHKCSI--CDYASVELSKMRNHMRSH 130
P CS C+ ++ H R+H
Sbjct: 47 PFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.0 bits (73), Expect = 0.018
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 151 LKRHLRIHTGEKPYACDI--CHARFTQSNSLKSHRLIHT 187
+ + + C C + +S+ LK+H HT
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 3e-11
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S +GE+PY C +C A + +L RH RIHTGEKP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKPY CD C F S L H+ IHT
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT 36
Score = 42.1 bits (100), Expect = 2e-06
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
+ EKP+ C C A +++ H R HTGE+P +
Sbjct: 2 SSGS-SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 41.3 bits (98), Expect = 4e-06
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 25 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S S E+P+ C C + F A L H HTG KP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 3e-05
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ +G KP+ C YC F S ELVRH R HT EKP S
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI----------------HTGEKPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.9 bits (133), Expect = 4e-11
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TGE+PY+C C A D +H R+HTG++P
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 44.9 bits (107), Expect = 2e-07
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C C F ++S H+ +HT
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHT 36
Score = 43.3 bits (103), Expect = 7e-07
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP+KC C A + S H R HTG+RP +
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 40.6 bits (96), Expect = 8e-06
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KC C + F +S H HTG +P
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 37.6 bits (88), Expect = 1e-04
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG KP+KC C F + +H R HT ++P S
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL----------------HTGQRPSGPS 44
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 56.1 bits (135), Expect = 4e-11
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 57 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYA 116
K C+ F+T ELV HV +H + ++ C +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE-------CPREGKS 71
Query: 117 SVELSKMRNHMRSHTGERPYQCA 139
K+ NH+R HTGE+ +
Sbjct: 72 FKAKYKLVNHIRVHTGEKSGPSS 94
Score = 46.5 bits (110), Expect = 1e-07
Identities = 20/83 (24%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 30 HSEERPHKCSVCERGFKTIASLQNHIN-THTGVKPHKCKYCESRFTTSGELVRHVRYKHT 88
+ C+R F T+ L H+ H G C +YK
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK-- 77
Query: 89 HEKPELVRHVRYKHTHEKPHKCS 111
LV H+R HT EK S
Sbjct: 78 -----LVNHIR-VHTGEKSGPSS 94
Score = 35.3 bits (81), Expect = 0.002
Identities = 14/53 (26%), Positives = 16/53 (30%), Gaps = 9/53 (16%)
Query: 23 LARHL-KSHSEERPHK--------CSVCERGFKTIASLQNHINTHTGVKPHKC 66
L H+ H C + FK L NHI HTG K
Sbjct: 41 LVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 34.9 bits (80), Expect = 0.002
Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 9/68 (13%)
Query: 130 HTGERPYQCAHCTYASPDTFKLKRHL-RIHTGEKPYACDICHAR--------FTQSNSLK 180
+ C +L H+ H G +C+ F L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 181 SHRLIHTP 188
+H +HT
Sbjct: 80 NHIRVHTG 87
Score = 27.2 bits (60), Expect = 1.4
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 157 IHTGEKPYACDICHARFTQSNSLKSH 182
I + C F+ + L +H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTH 44
Score = 25.7 bits (56), Expect = 4.5
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 21 YLLARHLKSHSEERPHKCS 39
Y L H++ H+ E+ S
Sbjct: 76 YKLVNHIRVHTGEKSGPSS 94
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 54.4 bits (132), Expect = 4e-11
Identities = 17/40 (42%), Positives = 19/40 (47%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
S GE+PY C C LK HLRIHTG P +
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 51.0 bits (123), Expect = 1e-09
Identities = 17/34 (50%), Positives = 19/34 (55%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
GEKPY C+IC RF +LKSH IHT
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT 35
Score = 46.3 bits (111), Expect = 6e-08
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 136
EKP+ C IC L +++H+R HTG P
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 42.1 bits (100), Expect = 2e-06
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPH 64
S E+P+ C +C F+ + +L++H+ HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 41.7 bits (99), Expect = 3e-06
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+ G KP+ C+ C +RF L H+R HT P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI-HTGSGP 39
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 4e-11
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACD 167
+ S +GE+PY+C C L H R+HTGEK
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 45.2 bits (108), Expect = 2e-07
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKPY C C + + L H+ +HT
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT 36
Score = 42.5 bits (101), Expect = 1e-06
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ EKP+KC C + H R HTGE+
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 41.7 bits (99), Expect = 3e-06
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S S E+P+KC C +G+K L H HTG K
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 38.7 bits (91), Expect = 3e-05
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ +G KP+KC C + +L H R HT EK S
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQR----------------VHTGEKLSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 54.5 bits (132), Expect = 5e-11
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TGE+PY+C C L H +HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 6e-08
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C+ C F L +H ++HT
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT 36
Score = 42.9 bits (102), Expect = 1e-06
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP+KC C + + H HTGE+P
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 3e-06
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KC C +GF L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG KP+KC+ C F +L H HT EKP S
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMV----------------HTGEKPSGPS 44
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 54.5 bits (132), Expect = 5e-11
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TG++P++C HC + L H RIHTGEK
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 45.2 bits (108), Expect = 1e-07
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TG+KP+ C C F +L +H+ IHT
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT 36
Score = 42.1 bits (100), Expect = 2e-06
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T +KP +C+ C + + H R HTGE+
Sbjct: 7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 38.7 bits (91), Expect = 3e-05
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+ ++ TG KP +C +C F G LV H R HT EK
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI-HTGEKS 40
Score = 38.7 bits (91), Expect = 4e-05
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + ++P +C+ C + F+ +L H HTG K
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 6e-11
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACD 167
+ S TGE+PY C C A + L +HLR+HT E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 47.1 bits (113), Expect = 3e-08
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY+C++C F S L H +HT
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 43.7 bits (104), Expect = 5e-07
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP+ C++C A V + + H+R HT E +
Sbjct: 7 GTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 41.3 bits (98), Expect = 4e-06
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 67
S + E+P+ C+VC + F A L H+ HT
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 37.5 bits (88), Expect = 1e-04
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG KP+ C C F S L +H+R HT E S
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV----------------HTQETLSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 54.1 bits (131), Expect = 6e-11
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TG+RPY+C C A L H R HTGEKP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 4e-08
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TG++PY C C F +SL HR HT
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHT 36
Score = 44.5 bits (106), Expect = 3e-07
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 67
S + +RP++C C + FKT +SL H +HTG KP
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 1e-06
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T ++P++C C A S + H RSHTGE+P
Sbjct: 7 GTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 7e-05
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG +P++C C F T L+ H R HT EKP S
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRR----------------SHTGEKPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 6e-11
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C C F L H ++HTGE+P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 46.0 bits (110), Expect = 7e-08
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C+ C + +L H+ +HT
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT 36
Score = 43.3 bits (103), Expect = 7e-07
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP+KC C + H + HTGERP
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 42.1 bits (100), Expect = 2e-06
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KC C +G+ + +L H HTG +P
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 39.0 bits (92), Expect = 3e-05
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP+KC+ C + + L H + HT E+P S
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK----------------VHTGERPSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 54.0 bits (131), Expect = 7e-11
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+P++CA C + + +L H RIHTGEKP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKP+ C C F+ S+ L +H+ IHT
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHT 36
Score = 44.4 bits (106), Expect = 3e-07
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP +C+ C + S++ H R HTGE+P +
Sbjct: 2 SSGSS-GTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 40.9 bits (97), Expect = 6e-06
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 25 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P +C+ C + F + L H HTG KP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 4e-05
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP +C C F+ S +L H R HT EKP S
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRI----------------HTGEKPSGPS 44
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 7e-11
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGER Y+C+ C A L H RIH GEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 44.4 bits (106), Expect = 3e-07
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGE+ Y C C F Q ++L H+ IH
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR 36
Score = 43.7 bits (104), Expect = 5e-07
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T E+ ++CS C A ++ S + H R H GE+P +
Sbjct: 7 GTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 39.4 bits (93), Expect = 2e-05
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + ER ++CS C + F ++L H H G KP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 36.3 bits (85), Expect = 2e-04
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG + ++C C F L H R H EKP S
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRI----------------HRGEKPSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 54.1 bits (131), Expect = 7e-11
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C C A T L +H R+HTGEKP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 6e-08
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C C F+Q+ L H+ +HT
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHT 36
Score = 41.7 bits (99), Expect = 3e-06
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP++C C A + + + H R HTGE+P +
Sbjct: 7 GTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
Score = 39.8 bits (94), Expect = 2e-05
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P++C C + F L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP++CK C F+ + L++H R HT EKP S
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRV----------------HTGEKPSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 7e-11
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+P+ C C A D L +H RIHTGEKP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-07
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKP+ C C F+ L HR IHT
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT 36
Score = 43.3 bits (103), Expect = 7e-07
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP C C A + + H R HTGE+P +
Sbjct: 7 GTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 41.3 bits (98), Expect = 5e-06
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P C C + F L H HTG KP
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 1e-04
Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP C C F+ L +H R HT EKP S
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR----------------IHTGEKPSGPS 44
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 7e-11
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACD 167
S TGE+P+QC C + L +HLR H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 43.7 bits (104), Expect = 6e-07
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKP+ C C F+ S SL H H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE 36
Score = 42.6 bits (101), Expect = 1e-06
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
++ TG KP +CK C F+ S L +H+R H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR-SHERTDP 40
Score = 42.2 bits (100), Expect = 2e-06
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP +C C + H+RSH P +
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 41.8 bits (99), Expect = 3e-06
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P +C C F SL H+ +H P
Sbjct: 1 GSSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 7e-11
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C+ C A L H RIH+G+KP
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 46.4 bits (111), Expect = 6e-08
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C +C F+ SL H+ IH+
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS 36
Score = 44.0 bits (105), Expect = 4e-07
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP++CS+C A + H R H+G++P +
Sbjct: 7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 41.3 bits (98), Expect = 5e-06
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P++CSVC + F SL H H+G KP
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 37.1 bits (87), Expect = 1e-04
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
++ TG KP++C C F+ L H R H+ +KP
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI-HSGKKP 40
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 7e-11
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C+ C + +L H RIHTGE P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 45.2 bits (108), Expect = 1e-07
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP++CS C + ++ S++ H R HTGE P +
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 45.2 bits (108), Expect = 2e-07
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C C F + + L H+ IHT
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT 36
Score = 41.0 bits (97), Expect = 6e-06
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P++CS C + F + L H HTG P
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 38.7 bits (91), Expect = 4e-05
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP++C C F +L H R HT E P S
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQR----------------IHTGENPSGPS 44
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 8e-11
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TGE+PY+C+ C + +L+ H + HTGE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 46.0 bits (110), Expect = 8e-08
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C C FT + L+ H+ HT
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT 36
Score = 45.6 bits (109), Expect = 1e-07
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP+KCS C + S++R H + HTGER
Sbjct: 7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 42.5 bits (101), Expect = 2e-06
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KCS C + F + L+ H HTG +
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 41.0 bits (97), Expect = 5e-06
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG KP+KC C FT L H + HT E+ S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC----------------HTGERHSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.0 bits (131), Expect = 8e-11
Identities = 20/41 (48%), Positives = 22/41 (53%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGERPY C C A D L +H +IHTGEKP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 2e-08
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGE+PY C +C FT ++L H+ IHT
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHT 36
Score = 44.0 bits (105), Expect = 4e-07
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T E+P+ C++C A + S + H + HTGE+P +
Sbjct: 7 GTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 2e-06
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 25 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + ERP+ C+VC + F ++L H HTG KP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG +P+ C C FT L++H + HT EKP S
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKI----------------HTGEKPSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 8e-11
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C C A L +H R+H+GEKP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 46.3 bits (111), Expect = 6e-08
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY CD+C F+ SL H+ +H+
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS 36
Score = 43.3 bits (103), Expect = 8e-07
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP++C +C A + + H R H+GE+P +
Sbjct: 7 GTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 40.2 bits (95), Expect = 9e-06
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P++C VC + F ASL H H+G KP
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 36.7 bits (86), Expect = 2e-04
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP++C C F+ L +H R H+ EKP S
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV----------------HSGEKPSGPS 44
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.0 bits (131), Expect = 8e-11
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACD 167
+ S TGE+P++C C + +L RH +HT EKP
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 48.3 bits (116), Expect = 1e-08
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKP+ CDIC F + L H ++HT
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT 36
Score = 43.6 bits (104), Expect = 5e-07
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP KC IC + S++ H HT E+P
Sbjct: 7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 41.7 bits (99), Expect = 3e-06
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P KC +C + F + L H HT KP
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG KP KC C F L RH HT EKP S
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSM----------------VHTAEKPSGPS 44
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 53.7 bits (130), Expect = 8e-11
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY C C + L +H R+H+GEKP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 48.3 bits (116), Expect = 1e-08
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C C F ++ L H+ +H+
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS 36
Score = 42.9 bits (102), Expect = 1e-06
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 67
S + E+P+ C C + F+ + L H H+G KP
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 42.6 bits (101), Expect = 1e-06
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP+ C C + S + H R H+GE+P
Sbjct: 2 SSGSS-GTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 38.3 bits (90), Expect = 6e-05
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
++ TG KP+ CK C F + L++H R H+ EKP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRV-HSGEKP 40
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 9e-11
Identities = 21/41 (51%), Positives = 23/41 (56%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TG +PYQC C A T KL RH R+HTGEKP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-07
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TG KPY C+ C F+Q++ L H+ +HT
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT 36
Score = 42.9 bits (102), Expect = 1e-06
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T KP++C+ C A + SK+ H R HTGE+P +
Sbjct: 7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 38.3 bits (90), Expect = 5e-05
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + +P++C+ C + F + L H HTG KP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 9e-05
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP++C C F+ + +L RH R HT EKP S
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRV----------------HTGEKPSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 9e-11
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C+ C + +L H +IHTGEKP
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 3e-08
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C IC FT+ + L H+ IHT
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT 36
Score = 45.2 bits (108), Expect = 2e-07
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP++CSIC + + S++ H + HTGE+P +
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 41.0 bits (97), Expect = 6e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 67
S + E+P++CS+C + F + L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 1e-04
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP++C C FT +L H + HT EKP S
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQ----------------IHTGEKPSGPS 44
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 9e-11
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S + E+PY+C C L H R+H GEK
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 46.3 bits (111), Expect = 6e-08
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+ EKPY C+ C + + +L H+ +H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM 36
Score = 44.0 bits (105), Expect = 4e-07
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S S E+P+KC C +G+ +L H H G K
Sbjct: 1 GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 42.1 bits (100), Expect = 2e-06
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ EKP+KC C + H R H GE+
Sbjct: 7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 39.0 bits (92), Expect = 3e-05
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ + KP+KC+ C + L H R H EK S
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV----------------HMGEKTSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 9e-11
Identities = 22/42 (52%), Positives = 25/42 (59%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TGE+PY+C C A T KL RH RIHTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C+ C F+Q++ L H+ IHT
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT 36
Score = 42.9 bits (102), Expect = 1e-06
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP+KC+ C A + SK+ H R HTGE+P +
Sbjct: 2 SSGS-SGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 40.2 bits (95), Expect = 9e-06
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 25 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KC+ C + F + L H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 5e-05
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG KP+KC C F+ + +L RH R HT EKP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI----------------HTGEKPSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 53.7 bits (130), Expect = 9e-11
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S GER ++C+ C +H RIHTGEKP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 5e-08
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
GE+ + C C F Q+++ HR IHT
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT 36
Score = 42.5 bits (101), Expect = 2e-06
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S ER H+CS C + F ++ H HTG KP
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 4e-06
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
E+ H+CS C ++ S H R HTGE+P
Sbjct: 7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 1e-05
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+ ++ G + H+C C F + ++H R HT EKP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI-HTGEKP 40
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 9e-11
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGER Y+C+ C A L H RIHTGEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 9e-08
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGE+ Y C C F + ++L H+ IHT
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHT 36
Score = 43.6 bits (104), Expect = 6e-07
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T E+ ++CS C A S + H R HTGE+P +
Sbjct: 7 GTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 2e-06
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + ER ++CS C + F ++L H HTG KP
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG + ++C C F L+ H R HT EKP S
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQR----------------IHTGEKPSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 1e-10
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S +GE+P++C C A L HLRIHTGEKP
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 5e-08
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKP+ C C F Q+ L SH IHT
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHT 36
Score = 42.1 bits (100), Expect = 2e-06
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S S E+P KC C + F+ L +H+ HTG KP
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 4e-06
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ EKP KC C A + + +H+R HTGE+P
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 38.2 bits (90), Expect = 5e-05
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ +G KP KCK C F + L H+R HT EKP S
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRI----------------HTGEKPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 1e-10
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TG +PY C C A L H IHTGEKP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TG KPY C+ C F+ +SL +H++IHT
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHT 36
Score = 43.7 bits (104), Expect = 5e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + +P+ C+ C + F +SL H HTG KP
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 1e-06
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T KP+ C+ C A S + H HTGE+P +
Sbjct: 2 SSGS-SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 37.5 bits (88), Expect = 9e-05
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TGVKP+ C C F+ L H HT EKP S
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI----------------HTGEKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 1e-10
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+CA C A D L H +IHTGEKP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 5e-08
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C C FT ++L +H+ IHT
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT 36
Score = 44.4 bits (106), Expect = 3e-07
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP++C+ C A + S + H + HTGE+P +
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 41.7 bits (99), Expect = 3e-06
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P++C+ C + F ++L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP++C C FT L H + HT EKP S
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI----------------HTGEKPSGPS 44
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 54.0 bits (131), Expect = 1e-10
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSH-RLIHT 187
R + C CT A LKRH R HT EKPY C +C+ FT+ + L H + IH+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 53.3 bits (129), Expect = 2e-10
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 106 KPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHL-RIHTGEK 162
+ C +C A ++ H RSHT E+PY C C A L RH +IH+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 52.5 bits (127), Expect = 4e-10
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPE 93
R C VC R F L+ H +HT KP+ C C FT L+RH + H+ E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 39.8 bits (94), Expect = 2e-05
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 17/73 (23%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELS 121
+ C+ C F L RH R HT+EKP+ C +C+ A
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR----------------SHTNEKPYPCGLCNRAFTRRD 44
Query: 122 KMRNHM-RSHTGE 133
+ H + H+G
Sbjct: 45 LLIRHAQKIHSGN 57
Score = 34.8 bits (81), Expect = 0.001
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHIN-THTG 60
L RH +SH+ E+P+ C +C R F L H H+G
Sbjct: 18 LKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 1e-10
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C C A L H IHTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 9e-08
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C+ C F ++L +H++IHT
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT 36
Score = 42.1 bits (100), Expect = 2e-06
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KC+ C + F+ ++L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 2e-06
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP+KC+ C A S + H HTGE+P
Sbjct: 7 GTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 8e-05
Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP+KC C F L H HT EKP S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI----------------HTGEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-10
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S +GE+PY+C C L H RIHTGEKP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 2e-08
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKPY C+ C FTQ++ L +H IHT
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHT 36
Score = 42.9 bits (102), Expect = 1e-06
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S S E+P+KC+ C + F + L NH HTG KP
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 3e-06
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
+ EKP+KC+ C + S + NH R HTGE+P +
Sbjct: 2 SSGSS-GSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 38.2 bits (90), Expect = 6e-05
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ +G KP+KC C FT + L H R HT EKP S
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI----------------HTGEKPSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-10
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C C A L H IHTG+KP
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 46.4 bits (111), Expect = 5e-08
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C+ C F+ +SL +H+ IHT
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT 36
Score = 42.9 bits (102), Expect = 9e-07
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP++C+ C A S + H HTG++P +
Sbjct: 7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 41.4 bits (98), Expect = 3e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 67
S + E+P++C+ C + F +SL H HTG KP
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
++ TG KP++C C F+ L H HT +KP
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI-HTGKKP 40
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 53.3 bits (129), Expect = 1e-10
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
S GE+PY+C C L+ H+ IHTG P +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 50.2 bits (121), Expect = 2e-09
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
GEKPY C+ C ARF Q L++H LIHT
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHT 35
Score = 45.2 bits (108), Expect = 2e-07
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 136
EKP+KC C V+++ +R H+ HTG P
Sbjct: 6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 42.5 bits (101), Expect = 1e-06
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+ G KP+KC+ C +RF L HV HT P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI-HTGSGP 39
Score = 40.2 bits (95), Expect = 8e-06
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPH 64
S E+P+KC C F +A L+ H+ HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-10
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+P++C C + +L H RIHTGE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 46.0 bits (110), Expect = 9e-08
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKP+ C C F+ ++ L H+ IHT
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT 36
Score = 43.3 bits (103), Expect = 7e-07
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKPH+C C + S++ H R HTGE P +
Sbjct: 2 SSGSS-GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 40.6 bits (96), Expect = 9e-06
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 25 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+PH+C C + F + L H HTG P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 38.3 bits (90), Expect = 5e-05
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KPH+C+ C F+ + +L+ H R HT E P S
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRI----------------HTGENPSGPS 44
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 53.5 bits (129), Expect = 1e-10
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 125 NHMRSHTGERPYQCAH--CTYASPDTFKLKRHLRIHTGEKPYACD 167
+ S TGE+P+ C C + + +L RH R H+G KP
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 45.4 bits (108), Expect = 1e-07
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 154 HLRIHTGEKPYACD--ICHARFTQSNSLKSHRLIHT 187
TGEKP+AC C RF++S+ L HR H+
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS 38
Score = 45.0 bits (107), Expect = 2e-07
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 18/61 (29%)
Query: 53 NHINTHTGVKPHKCKY--CESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKC 110
+ ++ TG KP C + C RF+ S EL RH R H+ KP
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR----------------SHSGVKPSGP 45
Query: 111 S 111
S
Sbjct: 46 S 46
Score = 40.7 bits (96), Expect = 7e-06
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 24 ARHLKSHSEERPHKCSV--CERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P C+ C F L H +H+GVKP
Sbjct: 1 GSSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 25.0 bits (55), Expect = 3.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 23 LARHLKSHSEERPHKCS 39
L+RH +SHS +P S
Sbjct: 30 LSRHRRSHSGVKPSGPS 46
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-10
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY C C A +L+ H RIHTGEKP
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 1e-08
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C+ C F + L+ H+ IHT
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHT 36
Score = 42.1 bits (100), Expect = 2e-06
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP+ C C A + S+++ H R HTGE+P
Sbjct: 2 SSGSS-GTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 7e-06
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 25 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+ C C + F + LQ H HTG KP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 6e-05
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP+ C+ C F +L H R HT EKP S
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI----------------HTGEKPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-10
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TGE P+ C+ C L H +IHTGE+P
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 45.2 bits (108), Expect = 1e-07
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGE P+ C C FT +L H+ IHT
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT 36
Score = 43.6 bits (104), Expect = 6e-07
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T E P CS C + + H + HTGERP
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 41.3 bits (98), Expect = 4e-06
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E P CS C + F +L H HTG +P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG P C C FT L+ H + HT E+P S
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQK----------------IHTGERPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-10
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C C+ A L +H + HTGEKP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 3e-08
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C +C FTQ L H+ HT
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT 36
Score = 42.5 bits (101), Expect = 1e-06
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 67
S + E+P++C VC + F A L H THTG KP
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 41.4 bits (98), Expect = 4e-06
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP++C +C A + + + H ++HTGE+P
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 5e-05
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
++ TG KP++CK C FT L +H + HT EKP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT-HTGEKP 40
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 53.3 bits (129), Expect = 1e-10
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C C A L H R HTGE +
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 45.5 bits (109), Expect = 1e-07
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C+ C F ++L H+ HT
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHT 36
Score = 42.9 bits (102), Expect = 1e-06
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP++C+ C A S + H R+HTGE
Sbjct: 7 GTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 40.5 bits (96), Expect = 9e-06
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P++C+ C++ F T ++L H THTG
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 37.8 bits (89), Expect = 7e-05
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
++ TG KP++C C+ F T L+ H R HT E
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQR-THTGESG 40
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-10
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TGE+P++C+ C A L H R HTGEKP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 45.9 bits (110), Expect = 8e-08
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKP+ C C F ++L H+ HT
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHT 36
Score = 43.2 bits (103), Expect = 7e-07
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP +CS C A S + H R+HTGE+P
Sbjct: 7 GTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 1e-06
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P +CS C++ F T ++L H THTG KP
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 40.5 bits (96), Expect = 7e-06
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG KP +C C+ F T L+ H R HT EKP S
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQR----------------THTGEKPSGPS 44
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 2e-10
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S GE+PY C+ C A L H+R H+GEKP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-07
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
GEKPY C C F+ + L H H+
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS 36
Score = 44.1 bits (105), Expect = 4e-07
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+ CS C + F + + L H+ TH+G KP
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 42.9 bits (102), Expect = 1e-06
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
EKP+ CS C A S + HMR+H+GE+P
Sbjct: 2 SSGS-SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 38.7 bits (91), Expect = 3e-05
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ G KP+ C C F++ L+ H+R H+ EKP S
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMR----------------THSGEKPSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 2e-10
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY C C + L RH RIHTGEKP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 8e-08
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C+ C F Q + L HR IHT
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHT 36
Score = 41.3 bits (98), Expect = 4e-06
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP+ C+ C + ++ S + H R HTGE+P
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 5e-06
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+ C+ C + F + L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 1e-04
Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP+ C C F L RH R HT EKP S
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRI----------------HTGEKPSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 2e-10
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TG + ++C C A L H +IHTGEKP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 2e-07
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TG K + C C FT+ ++L H+ IHT
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT 36
Score = 43.3 bits (103), Expect = 8e-07
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T K +C+ C A S + H + HTGE+P +
Sbjct: 7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 39.8 bits (94), Expect = 1e-05
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + + +C+ C + F ++L H HTG KP
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG K +C C FT L H + HT EKP S
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQK----------------IHTGEKPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.9 bits (128), Expect = 2e-10
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TG +PY C C A L H R HTGE +
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 44.8 bits (107), Expect = 2e-07
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TG KPY C+ C F + L H HT
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT 36
Score = 42.5 bits (101), Expect = 1e-06
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + +P+ C+ C + F++ + L H THTG
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 42.1 bits (100), Expect = 2e-06
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T KP+ C+ C A S + H R+HTGE
Sbjct: 2 SSGS-SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 37.5 bits (88), Expect = 9e-05
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+ ++ TG+KP+ C C F + L+ H R HT E
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTR-THTGESG 40
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 52.9 bits (128), Expect = 2e-10
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACD 167
+ S +GE+P++C C + H R H+GEKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 45.2 bits (108), Expect = 1e-07
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKP+ C+ C F ++ SH+ H+
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS 36
Score = 42.9 bits (102), Expect = 1e-06
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ EKP KC C S+ +H RSH+GE+P
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 42.2 bits (100), Expect = 2e-06
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S S E+P KC C +GF T + +H +H+G KP
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 39.1 bits (92), Expect = 3e-05
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+ ++ +G KP KC+ C F T+ + H R H+ EKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEKP 40
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-10
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TGE+PY+C+ C A L H + HTGE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C C FT+ + L H+ HT
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHT 36
Score = 45.2 bits (108), Expect = 1e-07
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP+KCS C A S + H +SHTGER
Sbjct: 7 GTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 43.7 bits (104), Expect = 5e-07
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KCS C + F + L H +HTG +
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 39.8 bits (94), Expect = 1e-05
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG KP+KC C FT L H + HT E+ S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS----------------HTGERHSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-10
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C C A L H H+GEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 46.4 bits (111), Expect = 6e-08
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C+ C F +SL H+ H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS 36
Score = 43.3 bits (103), Expect = 7e-07
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KC+ C + F+ +SL H TH+G KP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 42.9 bits (102), Expect = 9e-07
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP+KC+ C A S + H +H+GE+P
Sbjct: 7 GTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 37.1 bits (87), Expect = 1e-04
Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP+KC C F L H H+ EKP S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQA----------------THSGEKPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-10
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TGE+PY+C C A L +H RIHTGEKP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 4e-08
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C C F Q +L H+ IHT
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHT 36
Score = 43.3 bits (103), Expect = 9e-07
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP++C C A + + + H R HTGE+P +
Sbjct: 7 GTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 2e-06
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P++C C + F A+L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 8e-05
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG KP++C C F L +H R HT EKP S
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI----------------HTGEKPSGPS 44
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-10
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C C A + L +H +H+GE+P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 47.1 bits (113), Expect = 3e-08
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C +C F S+ L H +H+
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS 36
Score = 42.1 bits (100), Expect = 2e-06
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP+KC +C A S + H H+GERP
Sbjct: 7 GTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 42.1 bits (100), Expect = 2e-06
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KC VC + F+ + L H + H+G +P
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 38.3 bits (90), Expect = 5e-05
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP+KC+ C F S LV+H H+ E+P S
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV----------------HSGERPSGPS 44
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-10
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TGERP++C C + + L +H RIHTGEKP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 3e-08
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGE+P+ C+ C F QS L H+ IHT
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHT 36
Score = 42.5 bits (101), Expect = 1e-06
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + ERPHKC+ C + F A L H HTG KP
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 2e-06
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T E+PHKC+ C + ++ + + H R HTGE+P +
Sbjct: 2 SSGS-SGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 38.3 bits (90), Expect = 6e-05
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG +PHKC C F S L++H R HT EKP S
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI----------------HTGEKPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 52.9 bits (128), Expect = 2e-10
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S GE+ ++C C L+ H +H GEKP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 46.4 bits (111), Expect = 5e-08
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
EK KC CD + S +R H H GE+P
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-07
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
GEK + C C F+Q++SL+ H+ +H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV 36
Score = 44.5 bits (106), Expect = 3e-07
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S E+ KC C+ F +SL+ H N H G KP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 41.0 bits (97), Expect = 6e-06
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ G K KC+ C+ F+ + L H H EKP S
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV----------------HVGEKPSGPS 44
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-10
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE PY+C C A ++L H R H GEKP
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 44.8 bits (107), Expect = 2e-07
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGE PY C C F++ L SH+ H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHA 36
Score = 42.9 bits (102), Expect = 1e-06
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T E P++C C A ++ +H R+H GE+P +
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 41.7 bits (99), Expect = 3e-06
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E P++C C + F L +H TH G KP
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 38.3 bits (90), Expect = 6e-05
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG P++C C F+ +L+ H R H EKP S
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQR----------------THAGEKPSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-10
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S +GE+PY+C+ C A L H RIHTG +P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 46.3 bits (111), Expect = 5e-08
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKPY C C F + L HR IHT
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHT 36
Score = 42.5 bits (101), Expect = 2e-06
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S S E+P+KCS C + F L H HTG +P
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 41.7 bits (99), Expect = 3e-06
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ EKP+KCS C A + + H R HTG RP
Sbjct: 7 GSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 37.9 bits (89), Expect = 6e-05
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ +G KP+KC C F L H R HT +P S
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI----------------HTGYRPSGPS 44
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-10
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S +GE+P++C C +L H R+HTGEKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 3e-09
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKP+ C+ C RFTQ++ L SH+ +HT
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT 36
Score = 42.9 bits (102), Expect = 9e-07
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S S E+P KC C + F + L +H HTG KP
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 1e-06
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ EKP KC C + S++ +H R HTGE+P
Sbjct: 2 SSGSS-GSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ +G KP KC+ C RFT + +L H R HT EKP S
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV----------------HTGEKPSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-10
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TGE+PY+C C L RH RIHTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 4e-08
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C+ C F ++ L H+ IHT
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT 36
Score = 41.7 bits (99), Expect = 3e-06
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP+KC+ C S + H R HTGE+P
Sbjct: 7 GTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 5e-06
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 25 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KC+ C + F+ + L H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG KP+KC C F + L RH R HT EKP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI----------------HTGEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-10
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S +GE+PY C C L H R HTGEKP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-07
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKPY C+ C F+Q + L +H+ HT
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHT 36
Score = 42.5 bits (101), Expect = 2e-06
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ EKP+ C+ C + S + H R+HTGE+P
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S S E+P+ C+ C + F + L H THTG KP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 1e-04
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
++ +G KP+ C C F+ L H R HT EKP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQR-THTGEKP 40
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 3e-10
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C C + L H RIHTGEKP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 9e-09
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY CD+CH F +SL H+ IHT
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT 36
Score = 43.3 bits (103), Expect = 8e-07
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP+KC +C + S + H R HTGE+P
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 1e-06
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KC VC + F+ +SL H HTG KP
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 8e-05
Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP+KC C F L H R HT EKP S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI----------------HTGEKPSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 3e-10
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S GE+PYQC+ C + +++L +H HT EKP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 43.7 bits (104), Expect = 5e-07
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
GEKPY C C F+ S L H + HT
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT 36
Score = 42.1 bits (100), Expect = 2e-06
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
EKP++CS C + ++ H +HT E+P
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 41.4 bits (98), Expect = 4e-06
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S E+P++CS C + F L H THT KP
Sbjct: 1 GSSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 39.8 bits (94), Expect = 1e-05
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ G KP++C C F+ S L +H HT EKP S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT----------------HTREKPSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 3e-10
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S +GE+P+QC C L H R+HTGEKP
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKP+ C+ C RFTQ++ L SH+ +HT
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHT 36
Score = 41.8 bits (99), Expect = 3e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ EKP +C C + S + +H R HTGE+P
Sbjct: 7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 4e-06
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S S E+P +C C + F + L +H HTG KP
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 7e-05
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ +G KP +C+ C RFT + L H R HT EKP S
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV----------------HTGEKPSGPS 44
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 52.5 bits (127), Expect = 3e-10
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S G PY+C+ C + +L H R+HT EKP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 44.5 bits (106), Expect = 2e-07
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
P+KCS C+ + ++ H R HT E+P
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 43.7 bits (104), Expect = 5e-07
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
G PY C C F+ L H+ +HT
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT 36
Score = 43.3 bits (103), Expect = 9e-07
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + P+KCS CE+ F L H HT KP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 41.4 bits (98), Expect = 3e-06
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ GV P+KC CE F+ L+ H R HT EKP S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR----------------MHTREKPSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 3e-10
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TGE+PY+C C L RH IHTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 2e-08
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C+ C FTQ++ L HR IHT
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHT 36
Score = 41.7 bits (99), Expect = 3e-06
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP+KC+ C + S + H HTGE+P +
Sbjct: 2 SSGSS-GTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 40.5 bits (96), Expect = 8e-06
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 25 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KC+ C + F + L H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 38.2 bits (90), Expect = 6e-05
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG KP+KC C FT + LVRH HT EKP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI----------------HTGEKPSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 3e-10
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C C L RH IHTGEKP
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 3e-08
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C C F +++ L H+LIHT
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT 36
Score = 42.1 bits (100), Expect = 2e-06
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KC C + F+ + L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 3e-06
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP+KC C S + H HTGE+P
Sbjct: 2 SSGSS-GTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP+KC C F + L RH HT EKP S
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLI----------------HTGEKPSGPS 44
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 3e-10
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S +G++PY+C C L +H R+HTGE+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 43.7 bits (104), Expect = 5e-07
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+G+KPY C C F Q L H+ +HT
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT 36
Score = 41.4 bits (98), Expect = 4e-06
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ +KP++C C +++ + H R HTGER
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 41.4 bits (98), Expect = 4e-06
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCK 67
S S ++P++C C + F I L H HTG +
Sbjct: 1 GSSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 39.4 bits (93), Expect = 2e-05
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
++ +G KP++CK C F G L +H R HT E+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRV-HTGERS 40
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 3e-10
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C C L H RIHTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C+ C FTQ++ L +H+ IHT
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT 36
Score = 41.4 bits (98), Expect = 4e-06
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP+KC+ C + S + NH R HTG +P
Sbjct: 2 SSGSS-GTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 40.6 bits (96), Expect = 6e-06
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 25 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KC+ C + F + L NH HTGVKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 37.5 bits (88), Expect = 9e-05
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP+KC C FT + L H R HT KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRI----------------HTGVKPSGPS 44
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 52.6 bits (127), Expect = 3e-10
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHL-RIHTGEKPYACDICHARFTQ 175
+ S + +PY C C L H+ ++HT E+P+ C + + +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 51.0 bits (123), Expect = 1e-09
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHI-NTHTGVKPHKCKYCESRFTT 75
S S +P+ C C +GF L HI HT +PHKC+ S ++
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 41.0 bits (97), Expect = 5e-06
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 15/61 (24%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSI 112
+ ++ + KP+ C+ C F+ H L H++ HT E+PHKC +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRP-----------DH----LNGHIKQVHTSERPHKCQV 46
Query: 113 C 113
Sbjct: 47 W 47
Score = 39.9 bits (94), Expect = 2e-05
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSH-RLIHT 187
+ KPY C C F++ + L H + +HT
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT 37
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 52.5 bits (127), Expect = 3e-10
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TGE+P++C C L H ++HTGEKP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-07
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKP+ C C F++ ++L H +HT
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT 36
Score = 44.4 bits (106), Expect = 3e-07
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP KC C S + H + HTGE+P +
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 41.4 bits (98), Expect = 4e-06
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P KC C +GF ++L H HTG KP
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 4e-05
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TG KP KC C F+ L H + HT EKP S
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHK----------------LHTGEKPSGPS 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 3e-10
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C C L RH IHTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-07
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C+ C FTQ++ L HR IHT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT 36
Score = 41.3 bits (98), Expect = 3e-06
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP+KC+ C + S + H HTGE+P +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 39.4 bits (93), Expect = 2e-05
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KC+ C + F + L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 1e-04
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
++ TG KP+KC C FT + L RH HT EKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGI-HTGEKP 40
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 52.8 bits (126), Expect = 3e-10
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 108 HKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
+ C C + S ++ H+R+HT RPY C +C ++ L +H++ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 46.6 bits (110), Expect = 6e-08
Identities = 16/52 (30%), Positives = 21/52 (40%)
Query: 136 YQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
Y C C LK+H+R HT +PY C C+ F +L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 40.5 bits (94), Expect = 1e-05
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 36 HKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEK 91
+ C C K + L+ HI THT V+P+ C YC F T G L +H++ H K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK-SKAHSK 56
Score = 36.2 bits (83), Expect = 4e-04
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 86 KHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGER 134
+ L +H+R HT +P+ C+ C+++ + HM+S +
Sbjct: 9 IRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 35.5 bits (81), Expect = 7e-04
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVK 62
L +H+++H++ RP+ C+ C FKT +L H+ + K
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 52.1 bits (126), Expect = 3e-10
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+ Y+C C +L +H +IHTGEKP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 5e-08
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEK Y C+ C F++++ L H+ IHT
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHT 36
Score = 42.1 bits (100), Expect = 2e-06
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+ +KC+ C + F + L H HTG KP
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 3e-06
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EK +KC+ C S++ H + HTGE+P +
Sbjct: 7 GTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 37.5 bits (88), Expect = 9e-05
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG K +KC C F+ + +L +H + HT EKP S
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI----------------HTGEKPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 3e-10
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+P++C C + L +H R+HTGEKP
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 7e-08
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKP+ C C + Q L H+ +HT
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHT 36
Score = 42.5 bits (101), Expect = 2e-06
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P KC C + + L H HTG KP
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 3e-06
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP KC C + + + H R HTGE+P +
Sbjct: 2 SSGSS-GTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 37.9 bits (89), Expect = 7e-05
Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP KC C + L +H R HT EKP S
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV----------------HTGEKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 3e-10
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TG++PY+C C L RH IHTGEKP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-07
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TG+KPY C+ C FTQ++ L HR IHT
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT 36
Score = 41.7 bits (99), Expect = 3e-06
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T +KP+KC+ C + S + H HTGE+P +
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 38.6 bits (91), Expect = 4e-05
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + ++P+KC+ C + F + L H HTG KP
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 2e-04
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
++ TG KP+KC C FT + L RH HT EKP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGI-HTGEKP 40
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 4e-10
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+P +C C A +L H R H +K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 44.5 bits (106), Expect = 2e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T EKP KC+ C A S++ H R+H ++
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 42.2 bits (100), Expect = 2e-06
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 25 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P KC+ C + F + L H TH K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 41.8 bits (99), Expect = 2e-06
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKP C C F + L H+ H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV 36
Score = 39.5 bits (93), Expect = 2e-05
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP KC C F +L+ H R H +K S
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQR----------------THVDDKHSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 52.1 bits (126), Expect = 4e-10
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S TG +PY C+ C +L H R HTG KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 45.2 bits (108), Expect = 1e-07
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TG KPY C C F+ + L H+ HT
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT 36
Score = 44.1 bits (105), Expect = 4e-07
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + +P+ CS C + F + L H +HTGVKP
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 43.3 bits (103), Expect = 8e-07
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T KP+ CS C S++ H RSHTG +P
Sbjct: 7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 16/59 (27%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+ ++ TGVKP+ C C F+ +L+ H R HT KP S
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR----------------SHTGVKPSGPS 44
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 4e-10
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S GE+ Y+C C + L+ H R+HTGEKP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 8e-09
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
GEK Y CD+C F+QS+ L++H+ +HT
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT 36
Score = 42.5 bits (101), Expect = 2e-06
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S E+ +KC VC + F + LQ H HTG KP
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 2e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
EK +KC +C + S ++ H R HTGE+P
Sbjct: 7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 9e-05
Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ G K +KC C F+ S L H R HT EKP S
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV----------------HTGEKPSGPS 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 5e-10
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE+PY+C C L RH R+HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 45.6 bits (109), Expect = 1e-07
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGEKPY C+ C FTQ++ L HR +HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHT 36
Score = 42.1 bits (100), Expect = 2e-06
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAH 140
T EKP+KC+ C + S + H R HTG +P +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 39.4 bits (93), Expect = 2e-05
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E+P+KC+ C + F + L H HTG KP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 37.1 bits (87), Expect = 1e-04
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ TG KP+KC C FT + L RH R HT KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRV----------------HTGGKPSGPS 44
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 51.8 bits (125), Expect = 5e-10
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
S GE+PY+C C A L H+R+HTG P +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 47.6 bits (114), Expect = 2e-08
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
GEKPY CD C F+Q SL H +HT
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT 35
Score = 39.5 bits (93), Expect = 2e-05
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 136
EKP++C C A + + H+R HTG P
Sbjct: 6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 39.5 bits (93), Expect = 2e-05
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+ G KP++C C F+ G L+ H+R HT P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGP 39
Score = 36.4 bits (85), Expect = 2e-04
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPH 64
S E+P++C C + F SL HI HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 6e-10
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S G++ ++C C + L H RIHTGEKP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
G+K + C+ C FTQS+SL H+ IHT
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT 36
Score = 42.9 bits (102), Expect = 1e-06
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+K KC+ C + S + H R HTGE+P
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 2e-06
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + ++ KC+ C++ F +SL H HTG KP
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 3e-05
Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ G K KC C+ FT S L H R HT EKP S
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI----------------HTGEKPSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 51.4 bits (124), Expect = 6e-10
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S +GE+PY+C C A L H R H G +
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 45.6 bits (109), Expect = 1e-07
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKPY C+ C F + L H H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA 36
Score = 44.4 bits (106), Expect = 2e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S S E+P++C+ C + F + L H TH GV
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 40.6 bits (96), Expect = 7e-06
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 96 RHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ EKP++C+ C A + S + H R+H G
Sbjct: 2 SSGS-SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 36.4 bits (85), Expect = 2e-04
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+ ++ +G KP++C C F L+ H R H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHER-THAGVSG 40
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 7e-10
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S +GERPY C C L HL+ H EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 41.7 bits (99), Expect = 3e-06
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S S ERP+ C+ C + F + L H+ H K
Sbjct: 1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 41.7 bits (99), Expect = 3e-06
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GE+PY C+ C F + + L H H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF 36
Score = 39.8 bits (94), Expect = 2e-05
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCA 139
+ E+P+ C+ C S + H++ H E+ +
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 38.7 bits (91), Expect = 4e-05
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ +G +P+ C C F L+ H++ H EK S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR----------------HFREKSSGPS 44
Score = 25.2 bits (56), Expect = 3.0
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 23 LARHLKSHSEERPHKCS 39
L HLK H E+ S
Sbjct: 28 LIEHLKRHFREKSSGPS 44
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 51.0 bits (123), Expect = 8e-10
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLR-IHTGEKPYAC 166
+ S TG++PY+C C A L RH R HTGEKP
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 45.3 bits (108), Expect = 2e-07
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSH-RLIHT 187
TG+KPY C C F Q+ SL H R HT
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT 37
Score = 43.7 bits (104), Expect = 6e-07
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+ ++ TG KP++C C F + L+RH RY HT EKP
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 39.1 bits (92), Expect = 3e-05
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRS-HTGERPYQC 138
T +KP++C C A ++ + + H R HTGE+P
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 37.2 bits (87), Expect = 1e-04
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHI-NTHTGVKPHKC 66
S + ++P++C C + F SL H HTG KP
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 51.0 bits (123), Expect = 9e-10
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S TGE PY+C C +L H + H+G+ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 42.1 bits (100), Expect = 2e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
TGE PY C C F++ + L SH+ H+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS 36
Score = 40.2 bits (95), Expect = 1e-05
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
T E P++C C ++ +H ++H+G+
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 39.0 bits (92), Expect = 3e-05
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S + E P++C C + F L +H TH+G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 37.9 bits (89), Expect = 7e-05
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
++ TG P++C C F+ +LV H + H+ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKT-HSGQSG 40
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 51.0 bits (123), Expect = 1e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+ S + + +QC C L +H RIHTGEKP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 5e-07
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+ K + C C FT + L H+ IHT
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT 36
Score = 42.1 bits (100), Expect = 2e-06
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S S + H+C C RGF + L H HTG KP
Sbjct: 1 GSSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 4e-06
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+ ++ + K H+C C FT L +H R HT EKP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI-HTGEKP 40
Score = 40.2 bits (95), Expect = 1e-05
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ K H+C C S + H R HTGE+P
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 50.2 bits (121), Expect = 2e-09
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 128 RSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+GE PY+C+ C A +L H R H GE +
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 42.9 bits (102), Expect = 9e-07
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ E P++CS C A ++ +H R+H GE
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 40.6 bits (96), Expect = 6e-06
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 156 RIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GE PY C C F + + L SH+ H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHA 34
Score = 40.2 bits (95), Expect = 9e-06
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 28 KSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S E P++CS C + F L +H TH G
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 37.5 bits (88), Expect = 8e-05
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 56 NTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+ +G P++C C F +L+ H R H E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQR-THAGESG 38
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-09
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S +GERP++C C L HLR+H+ EK
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 43.7 bits (104), Expect = 6e-07
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GE+P+ C+ C F + + L H +H+
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 42.5 bits (101), Expect = 1e-06
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S S ERP KC+ C +GF + L H+ H+ K
Sbjct: 1 GSSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 41.8 bits (99), Expect = 3e-06
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ E+P KC+ C S + H+R H+ E+
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 16/58 (27%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
++ +G +P KC C F L H+R H+ EK S
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRL----------------HSREKSSGPS 44
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 49.1 bits (118), Expect = 6e-09
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 128 RSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+GE+P+ C+ C A L H + H EKP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 46.0 bits (110), Expect = 8e-08
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ EKP CS C+ A S + H ++H E+P
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 41.8 bits (99), Expect = 3e-06
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 28 KSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S E+P CS CE+ F + + L H TH KP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 40.2 bits (95), Expect = 1e-05
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 156 RIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKP+ C C F+ + L H+ H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA 34
Score = 38.7 bits (91), Expect = 3e-05
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 16/55 (29%)
Query: 57 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCS 111
+G KP C CE F++ L+ H + H EKP S
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQ----------------THAEEKPSGPS 42
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 48.7 bits (117), Expect = 6e-09
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 128 RSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
+G+R Y+C C + L H RIHTG P +
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 39.9 bits (94), Expect = 1e-05
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 156 RIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+G++ Y C C F Q SL H IHT
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHT 34
Score = 37.6 bits (88), Expect = 9e-05
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 136
+ ++ ++C C + + + H R HTG P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 36.0 bits (84), Expect = 3e-04
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 56 NTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+ +G + ++C+ C F G L H R HT P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERI-HTGSGP 38
Score = 31.8 bits (73), Expect = 0.011
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 28 KSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPH 64
S +R ++C C + F+ SL H HTG P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 50.5 bits (120), Expect = 9e-09
Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 13/117 (11%)
Query: 50 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHK 109
S + + + TG +CK C + + T EL H+ Y+ + +
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETG-----------HYRDDNHETDN 54
Query: 110 CSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHL--RIHTGEKPY 164
+ ++ + ++ +C +C ++ L H+ H +
Sbjct: 55 NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
Score = 46.7 bits (110), Expect = 2e-07
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 13/116 (11%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRY 85
+ + +C C + T+ L H+N TG ++ R
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPRKRSL 68
Query: 86 KHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHM--RSHTGERPYQCA 139
K +K KC C ++ L + HM H + +
Sbjct: 69 LEMEG----------KEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSS 114
Score = 37.8 bits (87), Expect = 4e-04
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 121 SKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLK 180
S + + TG ++C C+ A +L H+ TG + S
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNE-TGHYRDDNHETDNNNPKRWSKP 63
Query: 181 SHRLIHT 187
R +
Sbjct: 64 RKRSLLE 70
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 48.3 bits (116), Expect = 1e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
S T + Y C C A F L RH +IHT + +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 41.8 bits (99), Expect = 3e-06
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
T K Y C+ C FT+ L H+ IHT
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 35.2 bits (82), Expect = 6e-04
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
++ T K + C C FT L RH + HT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI-HTRKSG 40
Score = 33.3 bits (77), Expect = 0.003
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCA 139
T K + C+ C A + + H + HT +
Sbjct: 7 GTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
Score = 31.8 bits (73), Expect = 0.011
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S ++ + + C+ C + F I L H HT
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 48.0 bits (115), Expect = 1e-08
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYA 165
S GE PY C C + L H R + P +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 42.7 bits (101), Expect = 1e-06
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
GE PY C C FTQ SL H+ +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
Score = 38.0 bits (89), Expect = 7e-05
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPY 136
E P+ C C + + + H RS + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 36.9 bits (86), Expect = 1e-04
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+ G P+ C C FT G L H R + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS-CSQSGP 39
Score = 36.1 bits (84), Expect = 3e-04
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHK 65
S E P+ C C + F SL H + + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 5e-08
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACD 167
S +GE+ + C C L+ H R+H GEK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 44.1 bits (105), Expect = 4e-07
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEK + CD C F ++L+ H+ +H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
Score = 40.7 bits (96), Expect = 7e-06
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S S E+ H C C + F I++L+ H H G K
Sbjct: 1 GSSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 38.7 bits (91), Expect = 3e-05
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ EK H C C +S +R H R H GE+
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 37.2 bits (87), Expect = 1e-04
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
++ +G K H C C F L H R H EK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV-HMGEKC 40
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 44.5 bits (105), Expect = 3e-07
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 128 RSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDIC 169
S + C C D + L RH H+GEKPY+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 44.2 bits (104), Expect = 5e-07
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 101 KHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCT 142
K C IC ++ + H SH+GE+PY +
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 42.2 bits (99), Expect = 2e-06
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 28 KSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYC 69
S + C +C + F+ + L H +H+G KP+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 33.8 bits (77), Expect = 0.003
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 156 RIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
K AC+IC F L H+L H+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHS 36
Score = 30.7 bits (69), Expect = 0.037
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 57 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+ K C+ C F L RH H+ EKP
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKL-SHSGEKP 40
Score = 24.9 bits (54), Expect = 4.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 21 YLLARHLKSHSEERPHKCSVC 41
Y L RH SHS E+P+
Sbjct: 26 YHLNRHKLSHSGEKPYSSGPS 46
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 43.1 bits (102), Expect = 9e-07
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 128 RSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
+GE+PY CA C D +L +H ++HT + +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 39.2 bits (92), Expect = 2e-05
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 156 RIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+GEKPY+C C F+ +N L H+ +HT
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 34.2 bits (79), Expect = 0.002
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC 138
+ EKP+ C+ C + +++ H + HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 33.5 bits (77), Expect = 0.003
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 57 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
+G KP+ C C+ F+ + LV+H + HT +
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKM-HTVKSG 38
Score = 31.9 bits (73), Expect = 0.010
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 28 KSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKC 66
S E+P+ C+ C+ F L H HT
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 43.1 bits (101), Expect = 2e-06
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 7/67 (10%)
Query: 121 SKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLK 180
+ H G+R +C+ C + K C+ C Q +L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALN 56
Query: 181 SHRLIHT 187
+
Sbjct: 57 KDEGNES 63
Score = 42.7 bits (100), Expect = 2e-06
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 93 ELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLK 152
+ + H ++ KCS C + + + + C C S L
Sbjct: 5 SSGKRQKI-HLGDRSQKCSKC-------GIIFIRRSTLSRRKTPMCEKCRKDSCQEAALN 56
Query: 153 RHLRIHTGEKPYA 165
+ +G+K
Sbjct: 57 KDEGNESGKKTSG 69
Score = 39.3 bits (91), Expect = 5e-05
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 23 LARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
+ K H +R KCS C F +T + K C+ C L +
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
Query: 83 VRYKHTHEKP 92
+ +K
Sbjct: 59 EG-NESGKKT 67
Score = 37.7 bits (87), Expect = 1e-04
Identities = 14/88 (15%), Positives = 22/88 (25%), Gaps = 23/88 (26%)
Query: 49 ASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPH 108
S H G + KC C F L R K
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-----------------------KTP 40
Query: 109 KCSICDYASVELSKMRNHMRSHTGERPY 136
C C S + + + + +G++
Sbjct: 41 MCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 29.6 bits (66), Expect = 0.12
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 25 RHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPH 64
+ S + C C + A+L +G K
Sbjct: 29 IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 40.8 bits (96), Expect = 5e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIH 186
R TG KP+ C C F++S+ L HR H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.5 bits (77), Expect = 0.002
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 126 HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIH 158
R TG +P+QC C + + L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.1 bits (76), Expect = 0.004
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 54 HINTHTGVKPHKCKYCESRFTTSGELVRHVR 84
TG+KP +C C+ F+ S L H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 29.2 bits (66), Expect = 0.079
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGV 61
+ + +P +C C+R F L H H V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 26.1 bits (58), Expect = 1.0
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 101 KHTHEKPHKCSICDYASVELSKMRNHMRSH 130
T KP +C CD + + H + H
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 39.1 bits (91), Expect = 3e-05
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 125 NHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKP 163
+ S GE P++C+ C L +H R H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 38.3 bits (89), Expect = 6e-05
Identities = 12/35 (34%), Positives = 13/35 (37%)
Query: 153 RHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHT 187
GE P+ C C FTQ N L H H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 36.0 bits (83), Expect = 4e-04
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 24 ARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPH 64
S + E P KCS C+R F L H TH
Sbjct: 1 GSSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 34.1 bits (78), Expect = 0.002
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTGERP 135
E P KCS CD + + + H R+H +
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 32.1 bits (73), Expect = 0.009
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 53 NHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPE 93
+ ++ G P KC C+ FT LV+H R H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER-THARKSGP 41
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 38.8 bits (89), Expect = 2e-04
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRY 85
L + C +C F + SL+ HI C C+ FT++ + HV
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCK 122
Query: 86 KHT 88
KH
Sbjct: 123 KHN 125
Score = 38.4 bits (88), Expect = 3e-04
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 109 KCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDI 168
K I + ++ S + + + C C + LK+H+R E C +
Sbjct: 48 KTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPV 105
Query: 169 CHARFTQSNSLKSH 182
C FT ++S H
Sbjct: 106 CKKEFTSTDSALDH 119
Score = 29.9 bits (66), Expect = 0.25
Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 22/113 (19%)
Query: 22 LLARHLKSHSEERPHKCSV----CERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSG 77
L H + ++R + V +S + + C C F++S
Sbjct: 29 LKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSV 88
Query: 78 ELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSH 130
L +H+RY E C +C +H+
Sbjct: 89 SLKQHIRY------------------TEHTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 26.8 bits (58), Expect = 2.6
Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 6/88 (6%)
Query: 104 HEKPHKCSICDYASVELSKMRNHMRSHTGERPYQC----AHCTYASPDTFKLKRHLRIHT 159
+ HK EL R H + +R + D L
Sbjct: 13 YLSNHKGIFIHVTLEELK--RYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASK 70
Query: 160 GEKPYACDICHARFTQSNSLKSHRLIHT 187
+ C +C F+ S SLK H
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYTE 98
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 36.7 bits (84), Expect = 7e-04
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 95 VRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRS-HTGER---PYQCAHCTYASPDTFK 150
H + E ++C C + + +L+ H+ S H Y C C + +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 151 LKRH-LRIHTGEKPYACDI 168
L H L+ H GE+ + +
Sbjct: 66 LSEHNLKYHPGEENFKLTM 84
Score = 33.2 bits (75), Expect = 0.010
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 25 RHLKSHSEERPHKCSVCERGFKTIASLQNHINT-HTGVK---PHKCKYCESRFTTSGELV 80
+ ++ E ++C C + H+++ H V + C C L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 81 RHVRYKHTHEKP 92
H H E+
Sbjct: 68 EHNLKYHPGEEN 79
Score = 33.2 bits (75), Expect = 0.011
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 121 SKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRI-HTG---EKPYACDICHARFTQS 176
++ ++ E Y+C +CT+ +PD H+ H Y C C+ +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 177 NSLKSHRLIHTP 188
++L H L + P
Sbjct: 64 DALSEHNLKYHP 75
Score = 30.9 bits (69), Expect = 0.085
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 50 SLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHK 109
++ ++CKYC + HV +H + +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVV------------LNSSYV 52
Query: 110 CSICDYASVELSKMRNH-MRSHTGERPYQC 138
C C++ + + H ++ H GE ++
Sbjct: 53 CVECNFLTKRYDALSEHNLKYHPGEENFKL 82
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 34.3 bits (78), Expect = 0.001
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
+PY C HC D L+RH+RIHTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 28.6 bits (63), Expect = 0.12
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTHTGVK 62
+P+ C C+R F +LQ H+ HTG K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 26.6 bits (58), Expect = 0.58
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 61 VKPHKCKYCESRFTTSGELVRHVRYKHTHEK 91
+KP+ C +C+ +F G L RHVR HT EK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRI-HTGEK 30
Score = 26.6 bits (58), Expect = 0.69
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 106 KPHKCSICDYASVELSKMRNHMRSHTGER 134
KP+ C C + ++ H+R HTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 23.9 bits (51), Expect = 5.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 162 KPYACDICHARFTQSNSLKSHRLIHT 187
KPY C C +F +L+ H IHT
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHT 27
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 34.1 bits (79), Expect = 0.001
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 62 KPHKCKY--CESRFTTSGELVRHVRYKHTHEK 91
+P C + C RFT S EL RH R HT EK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKR-THTGEK 31
Score = 28.7 bits (65), Expect = 0.10
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 134 RPYQCAH--CTYASPDTFKLKRHLRIHTGEK 162
RP+ C C + +L+RH R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 27.6 bits (62), Expect = 0.30
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 162 KPYACDI--CHARFTQSNSLKSHRLIHT 187
+P+ C C RFT+S+ L+ H+ HT
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHT 28
Score = 26.0 bits (58), Expect = 1.1
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 34 RPHKCSV--CERGFKTIASLQNHINTHTGVK 62
RP C+ C + F LQ H THTG K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 34.4 bits (78), Expect = 0.001
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 103 THEKPHKCSICDYASVELSKMRNHMRSHTGER 134
+ KP+KC C YAS + + H+R HTGE+
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 33.3 bits (75), Expect = 0.003
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 129 SHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
S + +PY+C C+YAS L HLR HTGEK
Sbjct: 3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 24.0 bits (51), Expect = 5.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 29 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVK 62
S S +P+KC C A+L H+ HTG K
Sbjct: 3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 36.3 bits (83), Expect = 0.003
Identities = 8/73 (10%), Positives = 21/73 (28%)
Query: 18 HVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSG 77
+ + R ++ R + +++ H N G K + + E
Sbjct: 163 RIYFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPE 222
Query: 78 ELVRHVRYKHTHE 90
+L + +
Sbjct: 223 DLRGPIHLSVLRQ 235
Score = 29.8 bits (66), Expect = 0.44
Identities = 5/38 (13%), Positives = 9/38 (23%)
Query: 151 LKRHLRIHTGEKPYACDICHARFTQSNSLKSHRLIHTP 188
H + GEK + L+ +
Sbjct: 196 ETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVL 233
Score = 29.0 bits (64), Expect = 0.83
Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 12/112 (10%)
Query: 63 PHKCKYCESRFTTSGELVRHVRYKHTHEKPELV-----RHVRYKHTHEKPHKCSICDYAS 117
++ K + T +R+V + L+ + ++ + + + S
Sbjct: 124 NNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYS 183
Query: 118 VELSKMRN-------HMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
+ K + H GE+ Q + L+ + + +
Sbjct: 184 EDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 26.3 bits (57), Expect = 6.2
Identities = 8/44 (18%), Positives = 13/44 (29%)
Query: 16 RYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHT 59
R H M H E+ + E+ L+ I+
Sbjct: 189 RLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 32.0 bits (72), Expect = 0.009
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 130 HTGERPYQCAHCTYASPDTFKLKRHLRIHT 159
+G+RP+ C C A RHL++HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 29.0 bits (64), Expect = 0.10
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 158 HTGEKPYACDICHARFTQSNSLKSHRLIHT 187
+G++P+ C IC + FT + H +HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 28.6 bits (63), Expect = 0.13
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 30 HSEERPHKCSVCERGFKTIASLQNHINTHT 59
S +RP C +C F T A+ H+ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 26.6 bits (58), Expect = 0.69
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 58 HTGVKPHKCKYCESRFTTSGELVRHVR 84
+G +P C+ C S FTT RH++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 25.5 bits (55), Expect = 1.9
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHT 131
+ ++P C IC A + H++ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 35.2 bits (80), Expect = 0.012
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 154 HLRIHTGEKPYACDICHARFTQSNSLKSHRLIH 186
+ Y C +C A L +H H
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 33.3 bits (75), Expect = 0.041
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 26 HLKSHSEERPHKCSVCERGFKTIASLQNHINTH 58
+ S ++C VC + L H+ +H
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.7 bits (71), Expect = 0.16
Identities = 7/58 (12%), Positives = 12/58 (20%)
Query: 101 KHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIH 158
+ + + YQC C+ L H+ H
Sbjct: 146 NQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 29.1 bits (64), Expect = 0.97
Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 3/61 (4%)
Query: 29 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHT 88
+ + T + ++C C + + +L HV +
Sbjct: 146 NQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVA---S 202
Query: 89 H 89
H
Sbjct: 203 H 203
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 31.4 bits (70), Expect = 0.015
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 106 KPHKCSICDYASVELSKMRNHMRSHTGER 134
KP KCS+C+YA+ S ++ HM H+ E+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 26.8 bits (58), Expect = 0.66
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 129 SHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
S + +P++C+ C YA+ LK H+ H+ EK
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 25.2 bits (54), Expect = 2.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 29 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVK 62
S S +P KCS+CE ++ ++L+ H+N H+ K
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 33.0 bits (74), Expect = 0.017
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPY 164
++ ++C +C+ L + +H R C +C+ + H K
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH-ESKCEYKKL 70
Query: 165 ACDICHARFTQSNSLKSHR 183
C C F S S+ H+
Sbjct: 71 TCLECMRTFKSSFSIWRHQ 89
Score = 31.0 bits (69), Expect = 0.066
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 3/75 (4%)
Query: 16 RYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTT 75
+ + H + C C F + Q H + K C C F +
Sbjct: 25 KLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKS 81
Query: 76 SGELVRHVRYKHTHE 90
S + RH H
Sbjct: 82 SFSIWRHQVEVHNQN 96
Score = 31.0 bits (69), Expect = 0.077
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 121 SKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSLK 180
S + + YQC C + H R+ C C RF +
Sbjct: 2 SSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQ 59
Query: 181 SHR 183
H
Sbjct: 60 EHE 62
Score = 27.2 bits (59), Expect = 1.7
Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 19/95 (20%)
Query: 60 GVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEKPHKCSICDYASVE 119
+ ++C+ C ++ ++ E H R C C
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA------------------AVCPYCSLRFFS 54
Query: 120 LSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRH 154
+ H S + C C +F + RH
Sbjct: 55 PELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 26.8 bits (58), Expect = 2.7
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 33 ERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRH 82
+ ++C +C ++ +H C YC RF + H
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEH 61
Score = 26.4 bits (57), Expect = 3.5
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 15 LRYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNH 54
LR+ L H +S E + C C R FK+ S+ H
Sbjct: 50 LRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRH 88
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 30.4 bits (69), Expect = 0.031
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTHTGVK 62
R C VC R F L+ H +HT K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 29.2 bits (66), Expect = 0.069
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
R + C CT A LKRH R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.1 bits (63), Expect = 0.18
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 106 KPHKCSICDYASVELSKMRNHMRSHTGER 134
+ C +C A ++ H RSHT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 27.7 bits (62), Expect = 0.30
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEK 91
+ C+ C F L RH R HT+EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEK 29
Score = 25.4 bits (56), Expect = 1.7
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 162 KPYACDICHARFTQSNSLKSHRLIHT 187
+ + C++C F + LK H HT
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHT 26
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 30.3 bits (67), Expect = 0.043
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 158 HTGEKPYACDICHARFTQSNSLKSHRLIH 186
+GEKPY+C +C RF + + + H H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 29.5 bits (65), Expect = 0.084
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 30 HSEERPHKCSVCERGFKTIASLQNHINTHTG 60
S E+P+ C VC FK + H+ +H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.8 bits (58), Expect = 0.84
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 102 HTHEKPHKCSICDYASVELSKMRNHMRSHTG 132
+ EKP+ C +C +M H+RSH G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 25.3 bits (54), Expect = 2.6
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 58 HTGVKPHKCKYCESRFTTSGELVRHVRYKH 87
+G KP+ C C RF + HVR
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 25.3 bits (54), Expect = 2.9
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 130 HTGERPYQCAHCTYASPDTFKLKRHLRIHTG 160
+GE+PY C C ++ H+R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 38
Score = 29.7 bits (66), Expect = 0.064
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 139 AHCTYASPDTFKLKRHLRIHT 159
C Y++PD +KL+ HL++HT
Sbjct: 15 DGCDYSTPDKYKLQAHLKVHT 35
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.065
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 161 EKPYACDICHARFTQSNSLKSHRLIHT 187
K + CD+C +F +LKSH+L+HT
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHT 33
Score = 24.4 bits (52), Expect = 4.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 29 SHSEERPHKCSVCERGFKTIASLQNHINTHT 59
S S + H C +C + FK+ +L++H HT
Sbjct: 3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHT 33
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.9 bits (66), Expect = 0.16
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 37 KCSVCERGFKTIASLQNHINT-HTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKP 92
C+V R KT+ L+ H+ KC++C +F + L H +H+ +
Sbjct: 29 TCNVVTR--KTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS 83
>3roj_A D-fructose 1,6-bisphosphatase class 2/sedoheptulo bisphosphatase;
fructose-1,6-/sedoheptulose-1,7-bisphosphatase,
hydrolase; HET: AMP GOL; 2.30A {Synechocystis} PDB:
3rpl_A*
Length = 379
Score = 31.2 bits (71), Expect = 0.20
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 9/47 (19%)
Query: 75 TSGELVRHVRYKH---------THEKPELVRHVRYKHTHEKPHKCSI 112
T G L+ VR+ H + R V H E P +
Sbjct: 332 TPGTLMEGVRFFHGGVRTQSLVISSQSSTARFVDTVHMKESPKVIQL 378
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (61), Expect = 0.29
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 158 HTGEKPYACDICHARFTQSNSLKSHRLIHT 187
EK + C+ C F+ S L H IHT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 24.8 bits (53), Expect = 4.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 29 SHSEERPHKCSVCERGFKTIASLQNHINTHT 59
S +E+ KC+ CE+ F L H HT
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 24.4 bits (52), Expect = 5.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 129 SHTGERPYQCAHCTYASPDTFKLKRHLRIHT 159
S E+ ++C C + L +H RIHT
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 24.0 bits (51), Expect = 7.1
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 57 THTGVKPHKCKYCESRFTTSGELVRHVR 84
+ K KC CE F+ S L +H R
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHER 33
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 27.3 bits (61), Expect = 0.39
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 105 EKPHKCSI--CDYASVELSKMRNHMRSHTGER 134
+K H C I C + S +R H+R HTGER
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 25.8 bits (57), Expect = 1.4
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 131 TGERPYQCAH--CTYASPDTFKLKRHLRIHTGEK 162
++ + C C T L+ HLR HTGE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 25.0 bits (55), Expect = 2.6
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 31 SEERPHKCSV--CERGFKTIASLQNHINTHTGVK 62
+++ H C + C + + + L+ H+ HTG +
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 26.7 bits (58), Expect = 0.65
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 KPHKCSICDYASVELSKMRNHMRSHTGER 134
KP +C +C A + S + H+R HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 25.9 bits (56), Expect = 1.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTHTGVK 62
+P +C +C + F +SL H+ HTG K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 24.0 bits (51), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 162 KPYACDICHARFTQSNSLKSHRLIHT 187
KP C +C FTQ++SL +H HT
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHT 26
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (59), Expect = 0.71
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 29 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVKPHK 65
S S E+ H+C C F SL H H G K
Sbjct: 6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSG 42
Score = 26.3 bits (57), Expect = 1.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 159 TGEKPYACDICHARFTQSNSLKSHRLIHT 187
+ EK + C C F Q SL H+++H
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHM 36
Score = 25.9 bits (56), Expect = 1.6
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 129 SHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEK 162
S + E+ +QC C L H +H G+K
Sbjct: 6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 24.4 bits (52), Expect = 6.5
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 103 THEKPHKCSICDYASVELSKMRNHMRSHTGER 134
+ EK H+C C + + H H G++
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 26.7 bits (58), Expect = 0.82
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 161 EKPYACDICHARFTQSNSLKSHR 183
+KPYACDIC R+ L H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHY 27
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 26.3 bits (58), Expect = 1.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 34 RPHKCSVCERGFKTIASLQNHINTH 58
R + CS C+R F++ +L H+N H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Score = 23.9 bits (52), Expect = 7.1
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 162 KPYACDICHARFTQSNSLKSHRLIH 186
+ Y C C F + +L H +H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 26.0 bits (56), Expect = 1.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 62 KPHKCKYCESRFTTSGELVRHVRYKHTHEK 91
K ++C+YCE R S L H++ KH+ EK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
Score = 23.6 bits (50), Expect = 6.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 134 RPYQCAHCTYASPDTFKLKRHLR 156
+ YQC +C + S D+ LK H++
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIK 23
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.3
Identities = 20/179 (11%), Positives = 47/179 (26%), Gaps = 45/179 (25%)
Query: 7 YWSDTTGYLRYHVMYLLARHLKSHSEERPHKCSVCERGFKTIASLQNHINTHTGVKP--H 64
W D V+ L + S E++P + ++ +I S+ + + H
Sbjct: 395 IWFDVIKSDVMVVVNKLHK--YSLVEKQPKESTI------SIPSIYLELKVKLENEYALH 446
Query: 65 K---------CKYCESRFTTSGE-------LVRHVRYKHTHEKPELVRHV-------RYK 101
+ + + H++ E+ L R V K
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 102 HTHEKPHKCSICDYASV--ELSKMRNHMRSHTGERP----------YQCAHCTYASPDT 148
H+ + + +L + ++ + + + S T
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 28.2 bits (62), Expect = 1.4
Identities = 14/80 (17%), Positives = 20/80 (25%), Gaps = 21/80 (26%)
Query: 92 PELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRSHTGERPYQCAHCTYASPDTFKL 151
+ V E H N + + ++ + C C Y
Sbjct: 136 SKAVHVFTRAKLAESVHAERY--------LAAYNDIDAPDDDKFHLCPICGY-------- 179
Query: 152 KRHLRIHTGEKPYACDICHA 171
IH GE C IC
Sbjct: 180 -----IHKGEDFEKCPICFR 194
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.1 bits (59), Expect = 1.4
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 37 KCSVCER-GFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPE 93
C C+ G KTI L+ H+ + C +C + + + HV H
Sbjct: 36 SCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG 92
>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate metabolism,
hydrolase manganese; 1.85A {Escherichia coli} PDB:
2r8t_A 3bih_A 1ni9_A 3d1r_A*
Length = 338
Score = 28.4 bits (64), Expect = 1.6
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 9/41 (21%)
Query: 75 TSGELVRHVRYKH---------THEKPELVRHVRYKHTHEK 106
T G+L+ + K K +R ++ H ++
Sbjct: 288 TKGDLLEGISRKGNIATTETLLIRGKSRTIRRIQSIHYLDR 328
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.8
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 14/61 (22%)
Query: 3 NTIYYWSDTTGYLR-----YH-----VMYLLARHLKSHSEERPHKCSVCERGFKTIASLQ 52
NT Y+ + LR YH ++ A L V +G + L+
Sbjct: 165 NTDDYFEE----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 53 N 53
N
Sbjct: 221 N 221
Score = 28.1 bits (62), Expect = 2.2
Identities = 34/205 (16%), Positives = 64/205 (31%), Gaps = 57/205 (27%)
Query: 9 SDTTGYLRYHVM--YLLARHLKSHSEERPHKCSV---CERGFKTIASL---QNHINTHTG 60
+DTT ++ Y+ AR + ++ ++ G + ++ Q + +
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD--- 168
Query: 61 VKPHKCKYCE---SRFTTSGELVRHVRYKHTHEKPELVRHV---RYKHTH--------EK 106
Y E + T LV + EL+R T E
Sbjct: 169 -------YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 107 PHKCSICDY-ASVELSKMRNHMRSHTGERP----YQCAH----CTYASPDTFKLKRHLRI 157
P DY S+ +S P Q AH +L+ +L+
Sbjct: 222 PSNTPDKDYLLSIPIS------------CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 158 HTGEKPYACDICHARFT-QSNSLKS 181
TG ++ + A +++S +S
Sbjct: 270 ATG---HSQGLVTAVAIAETDSWES 291
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 25.2 bits (54), Expect = 2.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 107 PHKCSICDYASVELSKMRNHMRSHT 131
P++C +C L+ M+ HMR H+
Sbjct: 3 PYRCPLCRAGCPSLASMQAHMRGHS 27
Score = 25.2 bits (54), Expect = 2.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 35 PHKCSVCERGFKTIASLQNHINTHT 59
P++C +C G ++AS+Q H+ H+
Sbjct: 3 PYRCPLCRAGCPSLASMQAHMRGHS 27
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 24.7 bits (53), Expect = 2.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 105 EKPHKCSICDYASVELSKMRNHMRSH 130
EKP CS+C S + S M H+R+H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 27.5 bits (60), Expect = 2.8
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 31 SEERPHKCSVCERGFKTIASLQNHINTHTGVKPHKCKYCESRFTTSGE 78
SE + C C R FKT + ++H+ K HK + R E
Sbjct: 288 SEAKGIYCPFCSRWFKTSSVFESHLVG----KIHKKNESKRRNFVYSE 331
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 26.8 bits (58), Expect = 2.8
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 5/82 (6%)
Query: 106 KPHKCSICDYASVELSKMRNHMRSHTGE---RPYQCAHCTYASPDTFKLKRHLRIHTGE- 161
+C +C + S+ H +S R Y + S K K +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 162 -KPYACDICHARFTQSNSLKSH 182
+ C +C+ F+ +SH
Sbjct: 91 DRSKCCPVCNMTFSSPVVAESH 112
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 24.7 bits (53), Expect = 3.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 162 KPYACDICHARFTQSNSLKSH 182
KPY C+ C RF QS+ L +H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 24.7 bits (53), Expect = 3.4
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 29 SHSEERPHKCSVCERGF-KTIASLQNHINTHTGVK 62
S S R KC C+ F K + LQ HI H GVK
Sbjct: 3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK 37
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 24.8 bits (53), Expect = 3.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 164 YACDICHARFTQSNSLKSHRL 184
+ C+ C RF++ SLK H L
Sbjct: 11 FFCNECDCRFSEEASLKRHTL 31
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 25.6 bits (55), Expect = 4.5
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 57 THTGVKPHKCKYCESRFTTSGELVRHVRYKHTHEKPELVRHVRYKHTHEK 106
++CK+C+S+ ++ EL H+ + + R R K K
Sbjct: 19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERRKQLLSK 68
Score = 24.8 bits (53), Expect = 8.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 136 YQCAHCTYASPDTFKLKRHLRIHTGE 161
YQC HC T +L HL IH E
Sbjct: 26 YQCKHCDSKLQSTAELTSHLNIHNEE 51
>3l0a_A Putative exonuclease; RER070207002219, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2, hydrolase; HET: PE4; 2.19A {Eubacterium rectale}
Length = 266
Score = 26.5 bits (58), Expect = 5.0
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 93 ELVRHVRYKHTHEKPHKCSICDY 115
+ R +R K+ +P +C +CD
Sbjct: 224 NMPRILRVKNGEVEPDRCELCDC 246
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 24.4 bits (52), Expect = 5.2
Identities = 9/29 (31%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 59 TGVKPHKCKYCESRFTTSGELVRHVRYKH 87
+G+K H C++C+ +++ L++H+R H
Sbjct: 6 SGIKQH-CRFCKKKYSDVKNLIKHIRDAH 33
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like,
oxidoreductase, competence, redox-active center; 1.40A
{Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Length = 202
Score = 26.2 bits (58), Expect = 5.5
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 136 YQCAHCTYASPDTF-KLKRHLRIHTG 160
Y+C C + D F K+++ I G
Sbjct: 39 YKCPSCKVFNSDIFPKIQKDF-IDKG 63
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 25.8 bits (56), Expect = 5.9
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 36 HKCSVCERGFKTIASLQNHINTHTGVKPHK 65
H+C C R F +L+ H + K HK
Sbjct: 51 HRCLACARYFIDSTNLKTHFRS----KDHK 76
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 25.0 bits (54), Expect = 5.9
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 120 LSKMRNHMRSHTGERPYQCAHCTYASPDTFKLKRHLRIHTGEKPYACDICHARFTQSNSL 179
S H + R C HC KLK H + G + C C + L
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLELSIL-KLKEHED-YCGARTELCGNCGRNVLVKD-L 58
Query: 180 KSHRLIH 186
K+H +
Sbjct: 59 KTHPEVC 65
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.0 bits (51), Expect = 7.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 29 SHSEERPHKCSVCERGFKTIASLQNHINTHTGVK 62
S S + C C + FK SLQ H+ HT K
Sbjct: 3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 26.1 bits (56), Expect = 7.2
Identities = 4/31 (12%), Positives = 7/31 (22%)
Query: 136 YQCAHCTYASPDTFKLKRHLRIHTGEKPYAC 166
C HC + + G+
Sbjct: 32 LSCGHCRNMENFLPVISQEAGTDIGKMHITF 62
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 23.6 bits (50), Expect = 7.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 162 KPYACDICHARFTQSNSLKSHRLIHT 187
+PY+C +C RF+ + +++H +HT
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 25.8 bits (56), Expect = 8.1
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 133 ERPYQCAHCTYASPDTF-KLKRHLRIH 158
+ +C C F KLK HL+
Sbjct: 167 QEDLKCWRCGETFGRHFTKLKAHLQEE 193
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 23.5 bits (50), Expect = 9.5
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 161 EKPYACDI--CHARFTQSNSLKSHRLIHT 187
+KP+ C C RFT + L H+ H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.133 0.437
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,841,506
Number of extensions: 149377
Number of successful extensions: 2235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1583
Number of HSP's successfully gapped: 912
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.2 bits)