Query psy907
Match_columns 472
No_of_seqs 198 out of 1813
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 18:06:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nwl_A GLTPH, glutamate sympor 100.0 1.1E-70 3.7E-75 576.0 20.6 326 1-433 81-421 (422)
2 2nwl_A GLTPH, glutamate sympor 95.4 0.024 8.2E-07 59.0 7.2 117 9-187 93-219 (422)
3 4dx5_A Acriflavine resistance 10.8 3.6E+02 0.012 30.6 6.8 34 239-272 998-1031(1057)
4 3arc_T Photosystem II reaction 10.6 84 0.0029 20.6 0.8 11 104-114 13-23 (32)
5 2v50_A Multidrug resistance pr 10.2 2E+02 0.0069 32.7 4.4 35 239-273 996-1030(1052)
6 5gds_I Hirunorm V; serine prot 9.7 90 0.0031 19.1 0.7 10 458-467 2-11 (26)
7 3ne5_A Cation efflux system pr 9.3 1.1E+03 0.039 26.3 10.3 34 239-272 1014-1047(1054)
8 3aqp_A Probable secdf protein- 6.4 2.1E+03 0.072 23.2 10.5 37 240-276 693-729 (741)
9 4dkl_A MU-type opioid receptor 6.3 1.5E+03 0.053 21.2 11.1 23 207-229 385-407 (464)
10 3eml_A Human adenosine A2A rec 5.5 1.8E+03 0.06 21.0 10.9 25 206-230 396-420 (488)
No 1
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=100.00 E-value=1.1e-70 Score=575.98 Aligned_cols=326 Identities=25% Similarity=0.402 Sum_probs=292.8
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHhCCCCCCcccccCCCccchhhhhhhhHHHhhhccCcccHHHHHhhhccceeeec
Q psy907 1 MTPSEFTGYPHASLINVILGITLALVIHPGNPEVKFNAGKAPAIKQINIMDGFLDMGRNLLPDNIFQAAFQQTATTYIED 80 (472)
Q Consensus 1 ~g~~~~~yy~~tt~~Av~~Gi~l~~~i~PG~g~~~~~~~~~~~~~~~~~lD~~~~lf~Nlipan~~~~~~~~~~~~~~~~ 80 (472)
+|.|++.||..||++|+.+|+.+++++|||.+.+.+..+...+ ....+.+.+.+.|++|+|+++++.
T Consensus 81 i~~~ti~~~~~tt~iA~~igl~~~~~~~pg~g~~~~~~~~~~~---~~~~~~~~~~l~~~iP~N~~~a~a---------- 147 (422)
T 2nwl_A 81 VGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQ---PHQAPPLVHILLDIVPTNPFGALA---------- 147 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSCCCCCCCCCC--------CCTHHHHGGGSCSCHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccc---cccCCcHHHHHHHHHhhChHHHHh----------
Confidence 3689999999999999999999999999998854221101000 111223556677899999999885
Q ss_pred CCCcchhhhhhhhcccccccCcccchhHHHHHHhhhhccCCCCCcchhHHHHHHHHHHHHHHhhhhccccccchhhHhhh
Q psy907 81 SSANATSAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTICSANATSAVKAM 160 (472)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~NiLGlI~FSi~fGi~lg~m~~~~~~~l~~ff~~lne~~~~~~~~~~~~~~~~~~~~~~ 160 (472)
T Consensus 148 -------------------------------------------------------------------------------- 147 (422)
T 2nwl_A 148 -------------------------------------------------------------------------------- 147 (422)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccccCCCCchhHHHHHHHHHHHHhccCCC--------CcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy907 161 KRNIGYRDGTNTLGVIFFSLVFGSVLGTLPG--------DKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGKII 232 (472)
Q Consensus 161 ~~~~~~~~~~n~L~vivfai~~Gial~~~~~--------e~~~~l~~~~~~l~~~~~kiv~~Im~~~PigVf~lia~~i~ 232 (472)
++|++|+++||+++|+++.+. + |+++++.+++|+++++++|+++|+|+++|+|+|+++++.++
T Consensus 148 --------~~~~L~vivfai~~Gial~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~kiv~~im~laPigvf~lia~~~~ 218 (422)
T 2nwl_A 148 --------NGQVLPTIFFAIILGIAITYL-MNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMA 218 (422)
T ss_dssp --------TCCHHHHHHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHT
T ss_pred --------hhchHHHHHHHHHHHHHHHHc-ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999988 5 66789999999999999999999999999999999999999
Q ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhHHHHHHHhhccCCcccHHHHHHHHHhhcCC
Q psy907 233 SIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKM 312 (472)
Q Consensus 233 ~~~~~~~l~~~l~~~v~~~~~~~~i~~lvv~~ll~~~~~r~np~~~l~~~~~~~l~Af~T~SS~atLPv~l~~~~~~lgv 312 (472)
+. +.+.+ .++++|++++|+++++|.+++||++++ ++|+||++|+|+++|++++||+|+||+||||++|||+|| +|+
T Consensus 219 ~~-g~~~l-~~l~~~i~~~~~~~~i~~~vv~~~~~~-~~~~np~~~~k~~~~a~~~Af~T~SS~AtLPv~m~~~~~-lGv 294 (422)
T 2nwl_A 219 EQ-GVHVV-GELAKVTAAVYVGLTLQILLVYFVLLK-IYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKE-MGI 294 (422)
T ss_dssp TT-GGGCC-THHHHHHHHHHHHHHHHHHHTHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHT-TTC
T ss_pred HH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhccHHhHHHHHHHHHHH-cCc
Confidence 74 56555 899999999999999999999999998 889999999999999999999999999999999999998 999
Q ss_pred CcCceeEEeecc-ccccCCccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHhcCCCc
Q psy907 313 NPRISRFILPIG-TINMDGSALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPI 391 (472)
Q Consensus 313 ~~~ia~fvlPlG-tin~~G~al~~~i~~iFiaq~~Gi~ls~~~~~~iil~~~l~S~g~agVPgg~~v~~~~vl~~lGlP~ 391 (472)
||++++|++|+| |+||||+|+|++++++|+||+||+|++++|++.++++++++|+|+||||||+++++.++|+++|+|.
T Consensus 295 ~~~i~~fvlPlGatinmdGtaiy~~~~aifiaq~~Gi~l~~~~~l~ii~~~~l~s~GaaGVPg~g~v~~~~vl~~~GlP~ 374 (422)
T 2nwl_A 295 SEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPL 374 (422)
T ss_dssp CHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHTCCCCSSCCHHHHHHHHHHHHHSCSSSSHHHHHHHHHHHHHTCCT
T ss_pred CcceeeEEeechhhhCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHcCCCc
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c------hhHHHHhhHhhhhccchhhhhhhhHHHHHHHHHhhhhhcch
Q psy907 392 D------DVTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHLSQKELNE 433 (472)
Q Consensus 392 e------~i~li~avd~llD~~rT~~NV~gd~~~a~iv~~~~~~~~~~ 433 (472)
| ++++++++||++||+||++||+||++++.+++||++ ++|+
T Consensus 375 ~~~~~~~~i~lii~id~~~D~~rTa~NV~Gd~~~a~iv~~~~~-~~~~ 421 (422)
T 2nwl_A 375 TDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTEG-TLVP 421 (422)
T ss_dssp TSTTHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred hhhhhhhhHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHhhc-cccC
Confidence 9 999999999999999999999999999999999774 5553
No 2
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=95.37 E-value=0.024 Score=59.03 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHH--hCCCCCCcccccCCCccchhhhhhhhHHHhhh-ccCcccHHHHHhhhccceeeecCCCcc
Q psy907 9 YPHASLINVILGITLALV--IHPGNPEVKFNAGKAPAIKQINIMDGFLDMGR-NLLPDNIFQAAFQQTATTYIEDSSANA 85 (472)
Q Consensus 9 y~~tt~~Av~~Gi~l~~~--i~PG~g~~~~~~~~~~~~~~~~~lD~~~~lf~-Nlipan~~~~~~~~~~~~~~~~~~~~~ 85 (472)
.....++++.++.++.-- .+.....+.++ ..+. ++..|.++|++| |++.+.-....
T Consensus 93 t~iA~~igl~~~~~~~pg~g~~~~~~~~~~~--~~~~---~~~~~~l~~~iP~N~~~a~a~~~~---------------- 151 (422)
T 2nwl_A 93 SAFAVTLGIIMARLFNPGAGIHLAVGGQQFQ--PHQA---PPLVHILLDIVPTNPFGALANGQV---------------- 151 (422)
T ss_dssp HHHHHHHHHHHHHHSCCCCSCCCCCCCCCC----------CCTHHHHGGGSCSCHHHHHHTCCH----------------
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccccc--cccC---CcHHHHHHHHHhhChHHHHhhhch----------------
Confidence 445667777787776322 11111101111 1111 346788999999 99986544332
Q ss_pred hhhhhhhhcccccccCcccchhHHHHHHhhhhccCCCC-------CcchhHHHHHHHHHHHHHHhhhhccccccchhhHh
Q psy907 86 TSAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPG-------DKKQSVIDFFQTVYETLLQMLLGTICSANATSAVK 158 (472)
Q Consensus 86 ~~~~~~~~~~~~~~~g~NiLGlI~FSi~fGi~lg~m~~-------~~~~~l~~ff~~lne~~~~~~~~~~~~~~~~~~~~ 158 (472)
|++++||++||+++.++++ +.++++++||+.+||+.+++.-
T Consensus 152 -------------------L~vivfai~~Gial~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~kiv~------------- 199 (422)
T 2nwl_A 152 -------------------LPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVN------------- 199 (422)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred -------------------HHHHHHHHHHHHHHHHcccccccccchhhhHHHHHHHHHHHHHHHHHH-------------
Confidence 5789999999999999983 3448999999999999995221
Q ss_pred hhhhccccCCCCchhHHHHHHHHHHHHhc
Q psy907 159 AMKRNIGYRDGTNTLGVIFFSLVFGSVLG 187 (472)
Q Consensus 159 ~~~~~~~~~~~~n~L~vivfai~~Gial~ 187 (472)
| + ..+.++-+|+++......
T Consensus 200 -~--i------m~laPigvf~lia~~~~~ 219 (422)
T 2nwl_A 200 -G--V------MQYAPIGVFALIAYVMAE 219 (422)
T ss_dssp -H--H------TTSHHHHHHHHHHHHHTT
T ss_pred -H--H------HHHHHHHHHHHHHHHHHH
Confidence 1 1 257888888888776543
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=10.82 E-value=3.6e+02 Score=30.56 Aligned_cols=34 Identities=6% Similarity=0.125 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy907 239 LALHQLSLFILCTVGGFLIYQLIISQLIYFIIIR 272 (472)
Q Consensus 239 ~l~~~l~~~v~~~~~~~~i~~lvv~~ll~~~~~r 272 (472)
..+.+++..+..-++...+..+++.|.++.++.+
T Consensus 998 ~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~~~ 1031 (1057)
T 4dx5_A 998 GAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRR 1031 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777655544444555667778888876654
No 4
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=10.62 E-value=84 Score=20.56 Aligned_cols=11 Identities=27% Similarity=0.923 Sum_probs=8.7
Q ss_pred cchhHHHHHHh
Q psy907 104 TLGVIFFSLVF 114 (472)
Q Consensus 104 iLGlI~FSi~f 114 (472)
.||+++|++.|
T Consensus 13 tlgiiFFAI~F 23 (32)
T 3arc_T 13 IIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHhhhh
Confidence 47899888875
No 5
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=10.19 E-value=2e+02 Score=32.71 Aligned_cols=35 Identities=9% Similarity=0.086 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy907 239 LALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRK 273 (472)
Q Consensus 239 ~l~~~l~~~v~~~~~~~~i~~lvv~~ll~~~~~r~ 273 (472)
..+.+++..+..-++...+..+++.|.++.++.|+
T Consensus 996 ~~~~~~~~~~~~Gl~~s~~~~l~~~P~l~~~~~~~ 1030 (1052)
T 2v50_A 996 GSQHAIGTGVIGGMVTATVLAIFWVPLFYVAVSTL 1030 (1052)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34467776555444445556788899888666543
No 6
>5gds_I Hirunorm V; serine protease-inhibitor complex, thrombin, thrombin synthe inhibitors, antithrombotics, hirunorms; HET: CHG NAL ALC DGL NAG; 2.10A {Homo sapiens} PDB: 4thn_I*
Probab=9.71 E-value=90 Score=19.12 Aligned_cols=10 Identities=40% Similarity=0.664 Sum_probs=8.6
Q ss_pred eecCCCCCCC
Q psy907 458 VSTDEEKPQN 467 (472)
Q Consensus 458 ~~~~~~~~~~ 467 (472)
|.||..|||+
T Consensus 2 v~tdagkPqs 11 (26)
T 5gds_I 2 VXTDAGXPES 11 (26)
T ss_pred ccccCCCccc
Confidence 6789999996
No 7
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=9.29 E-value=1.1e+03 Score=26.34 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy907 239 LALHQLSLFILCTVGGFLIYQLIISQLIYFIIIR 272 (472)
Q Consensus 239 ~l~~~l~~~v~~~~~~~~i~~lvv~~ll~~~~~r 272 (472)
.++.+++..+..-++...+..+++.|.++.++.+
T Consensus 1014 ~~~~~l~~~~~~Gl~~s~~~tl~v~P~l~~~~~~ 1047 (1054)
T 3ne5_A 1014 EVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWL 1047 (1054)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHTHHHHHHHTT
T ss_pred HHhccCHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666655544444555677788988877644
No 8
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=6.42 E-value=2.1e+03 Score=23.19 Aligned_cols=37 Identities=8% Similarity=0.019 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy907 240 ALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPY 276 (472)
Q Consensus 240 l~~~l~~~v~~~~~~~~i~~lvv~~ll~~~~~r~np~ 276 (472)
.+.+++..+..-++...+..+++.|.++.++.++++.
T Consensus 693 ~~~~~g~~~~~Gl~~~~~~sl~l~Pal~~~~~~~~~~ 729 (741)
T 3aqp_A 693 VLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNRRKA 729 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3366666555444444556777889888777655443
No 9
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=6.27 E-value=1.5e+03 Score=21.24 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q psy907 207 TLLQMLLGTIWFTPIGVGSVICG 229 (472)
Q Consensus 207 ~~~kiv~~Im~~~PigVf~lia~ 229 (472)
++.-++-+++.++|+.++.++..
T Consensus 385 l~~v~~~F~icw~P~~i~~l~~~ 407 (464)
T 4dkl_A 385 VLVVVAVFIVCWTPIHIYVIIKA 407 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Confidence 34455578889999999877654
No 10
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=5.45 E-value=1.8e+03 Score=21.00 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q psy907 206 ETLLQMLLGTIWFTPIGVGSVICGK 230 (472)
Q Consensus 206 ~~~~kiv~~Im~~~PigVf~lia~~ 230 (472)
-++.-++-+++.++|+.++.++...
T Consensus 396 ~l~~iv~~F~icw~P~~i~~~~~~~ 420 (488)
T 3eml_A 396 SLAIIVGLFALCWLPLHIINCFTFF 420 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 3344455688899999998777543
Done!