RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy907
(472 letters)
>gnl|CDD|215884 pfam00375, SDF, Sodium:dicarboxylate symporter family.
Length = 388
Score = 201 bits (514), Expect = 3e-60
Identities = 91/334 (27%), Positives = 166/334 (49%), Gaps = 19/334 (5%)
Query: 101 GTNTLGVIFFSLVFGSVLGTL------PGDKKQSVIDFFQTVYETLLQMLLGTICSANAT 154
G TL + +++G L PG ++ + LL + + +
Sbjct: 66 GGKTLLYFLVTTAIAAIIGLLVALLFQPGVGLLLSAASAESAKTLEVPSLLDFLLNIIPS 125
Query: 155 SAVKAMKRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLG 214
+ A+ N L VI F+++FG L L G+K + ++ F +++ E +++++
Sbjct: 126 NIFAALAEG-------NVLQVIVFAILFGIALAAL-GEKGKPLLKFLESLNEVIMKVVNW 177
Query: 215 TIWFTPIGVGSVICGKIISIANIGL-ALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRK 273
+ PIGV ++I ++ GL L L F+L I+ ++ L+ +
Sbjct: 178 VMKLAPIGVFALIAN---TVGTFGLGTLGSLGKFVLTVYLALAIHLFVVYPLLLKFLTGL 234
Query: 274 NPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIG-TINMDGSA 332
NP+++ K A++TAF+TAS +A+LP+T + ++ I+ F+LP+G TINMDG+A
Sbjct: 235 NPFKFLKKILPALLTAFSTASSAATLPVTLECAEKNLGVSKSIASFVLPLGATINMDGTA 294
Query: 333 LYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPID 392
+YL A IF+AQ + L G++ + L S +A +P +V + ++ S + P++
Sbjct: 295 IYLAVAAIFIAQAYGVDLSLGQLLLLILTATLASIGAAGVPGGGLVALALVLSALGLPVE 354
Query: 393 DVTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHL 426
+ L+ A+D +D FRT N+ GD A +V L
Sbjct: 355 GIALILAIDRILDMFRTAVNVTGDAAAAVIVAKL 388
>gnl|CDD|224220 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production
and conversion].
Length = 415
Score = 171 bits (436), Expect = 1e-48
Identities = 104/428 (24%), Positives = 195/428 (45%), Gaps = 34/428 (7%)
Query: 14 LINVILGITLALVIHPGNPEVKFNAGKAPAIKQINIMDGFLDMGRNLLPDNIFQAAFQQT 73
LI +ILGI + L + G A +K + D F+ + + ++ +F
Sbjct: 13 LIGLILGILVGLFLPEL--------GAAIYLKPLG--DIFIKLIKMIIIPLVFFTLVLGI 62
Query: 74 ATTYIEDSSANATSAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPG-DKKQSVIDF 132
A S + + +++ Y T TL + LV +VL G + + +D
Sbjct: 63 A------SLGDLKKLGRLGGKTLIYFLVTTTLAIAI-GLVVANVLQPGAGINIDPATLDT 115
Query: 133 FQTVYETLLQMLLGTICSANATSAVKAMKRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGD 192
++L LL I T+ A+ N L ++FF+++FG L L
Sbjct: 116 GAESEVSILDFLLDII----PTNIFGALAEG-------NVLQILFFAILFGLALAALGEK 164
Query: 193 KKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGKIISIANIGL-ALHQLSLFILCT 251
K V + F+++ E + ++ + PIGV ++ ++A G +L L +L
Sbjct: 165 GKPPVENLFESLSEAMFKVTNFVMRLAPIGVFGLMAF---TVAKYGFGSLLSLGKLVLAV 221
Query: 252 VGGFLIYQLIISQLIYFIIIRKNPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAK 311
G L++ ++ L+ ++ +P+++ S A++ AF+T+S A+LP+T +
Sbjct: 222 YLGLLLFVFVVLGLLLKLLSGFSPFKFLRYISEALLLAFSTSSSEATLPVTMEKAEKSLG 281
Query: 312 MNPRISRFILPIG-TINMDGSALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSA 370
+ I F++P+G T N+DG+A+Y A +F+AQ I L G+ T+ L + S +A
Sbjct: 282 VPKSIVSFVVPLGYTFNLDGTAIYQTLAALFIAQAYGIPLSLGQQLTLLLVAMLASKGAA 341
Query: 371 AIPSAAIVLVVMLCSTINAPIDDVTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHLSQKE 430
+P +V++ S++ P++ + L+ +D F+D RT N+ GD A VV +E
Sbjct: 342 GVPGGGLVVLAATLSSVGLPLEGLALILGIDRFLDMARTATNVTGDAVATVVVAKWEGEE 401
Query: 431 LNEDLEDG 438
+ +
Sbjct: 402 KADAVLSE 409
Score = 40.3 bits (95), Expect = 0.002
Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 35/133 (26%)
Query: 13 SLINVILGITLALVIHPGNP-EVKFNAGKAPAIKQINIMDGFLDMGRNLLPDNIFQAAFQ 71
+ + + +G+ +A V+ PG + A +++I+D LD ++P NIF A
Sbjct: 86 TTLAIAIGLVVANVLQPGAGINIDPATLDTGAESEVSILDFLLD----IIPTNIFGAL-- 139
Query: 72 QTATTYIEDSSANATSAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVID 131
+G N L ++FF+++FG L L K V +
Sbjct: 140 ---------------------------AEG-NVLQILFFAILFGLALAALGEKGKPPVEN 171
Query: 132 FFQTVYETLLQML 144
F+++ E + ++
Sbjct: 172 LFESLSEAMFKVT 184
>gnl|CDD|183075 PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.
Length = 437
Score = 99.5 bits (248), Expect = 1e-22
Identities = 81/290 (27%), Positives = 146/290 (50%), Gaps = 30/290 (10%)
Query: 144 LLGTICSANATSAVKAMKRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQT 203
L+GTI S T+ +M + L +IFFS++FG L +LP ++ ++ F++
Sbjct: 139 LMGTILSLIPTNIFASMAKG-------EMLPIIFFSVLFGLGLSSLPATHREPLVTVFRS 191
Query: 204 VYETLLQMLLGTIWFTPIGVGSVICGKIISIANIGLA-LHQLSLFILCTVGGFLIYQLII 262
V ET+ ++ + + P+GV ++I +++AN G A L L+ +L L + L++
Sbjct: 192 VSETMFKVTHMVMRYAPVGVFALIA---VTVANFGFASLWPLAKLVLLVYFAILFFALVV 248
Query: 263 SQLI-------YFIIIRKNPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMNPR 315
++ +I+IR +I A++TAS LP M+ A P+
Sbjct: 249 LGIVARLCGLSIWILIRI--------LKDELILAYSTASSETVLPRIIEKME--AYGAPK 298
Query: 316 -ISRFILPIG-TINMDGSALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIP 373
I+ F++P G + N+DGS LY A IF+AQ+ I L + + L + TS A +P
Sbjct: 299 SITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSIWQEIILVLTLMVTSKGIAGVP 358
Query: 374 SAAIVLVVMLCSTINAPIDDVTLLFAVDWFVDRFRTPNNLLGDCYAVAVV 423
+ V+++ ++ P++ + + VD +D RT N++G+ AV V+
Sbjct: 359 GVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMARTALNVVGNALAVLVI 408
Score = 37.8 bits (88), Expect = 0.010
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 37/136 (27%)
Query: 15 INVILGITLALVIHPGN-------PEVKFNAGKAPAIKQINIMDGFLDMGRNLLPDNIFQ 67
+ +ILGITLA V PG V + ++ + + G + +L+P NIF
Sbjct: 94 VAIILGITLANVFQPGAGIDMSQLATVDISKYQSTTEEVQSHSHGLMGTILSLIPTNIFA 153
Query: 68 AAFQQTATTYIEDSSANATSAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQ 127
+ M + L +IFFS++FG L +LP ++
Sbjct: 154 S-----------------------MAKG-------EMLPIIFFSVLFGLGLSSLPATHRE 183
Query: 128 SVIDFFQTVYETLLQM 143
++ F++V ET+ ++
Sbjct: 184 PLVTVFRSVSETMFKV 199
>gnl|CDD|183850 PRK13027, PRK13027, C4-dicarboxylate transporter DctA; Reviewed.
Length = 421
Score = 92.0 bits (229), Expect = 4e-20
Identities = 81/262 (30%), Positives = 125/262 (47%), Gaps = 21/262 (8%)
Query: 171 NTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVIC-- 228
+ L V+ FS++FGS L +L G++ + V + L +++ I P+GV I
Sbjct: 149 DILQVLLFSVLFGSAL-SLLGERAKRVNRLIDELSHVLFRIMGFIIKLAPLGVLGAIAFT 207
Query: 229 -GK--IISIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYKFSSA 285
GK + S+ +G+ + L V L + ++ F +IR Y +
Sbjct: 208 TGKYGVGSLKQLGMLVAVFYLTCFVFVVVVLGAVMRLAGFSVFKLIR------YLREELL 261
Query: 286 IITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIGT---INMDGSALYLPCAVIFL 342
I+ TAS A LP +VM + M + S L I T N+DG ++YL A +F+
Sbjct: 262 IV--LGTASSDAVLP---QVMRKLEHMGIKDSTVGLVIPTGYSFNLDGFSIYLTLAAVFI 316
Query: 343 AQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINA-PIDDVTLLFAVD 401
AQ N L ++ TI L L TS + IP +AIV++ S I A P+ + L+ VD
Sbjct: 317 AQATNTPLSMHDLITILLVSLVTSKGAHGIPGSAIVILAATLSAIPAIPVLGLVLILPVD 376
Query: 402 WFVDRFRTPNNLLGDCYAVAVV 423
WF+ R NL+G+C A VV
Sbjct: 377 WFMGIARALTNLIGNCVATVVV 398
>gnl|CDD|234968 PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.
Length = 428
Score = 85.3 bits (212), Expect = 6e-18
Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 27/265 (10%)
Query: 171 NTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGK 230
+ L V+ F+++FG L L G+K + V DF +++ L ++ + PIG +
Sbjct: 149 DILQVLLFAVLFGFALARL-GEKGKPVFDFIESLSHVLFGIVNMIMKLAPIGAFGAMA-- 205
Query: 231 IISIANIGLA-LHQLSLFILC---TVGGFLIYQL-IISQLIYFIIIRKNPYEYYYKFSSA 285
+I G+ L QL I C T F+ L I++L F I + + Y K
Sbjct: 206 -FTIGKYGVGSLVQLGQLIGCFYITCILFVFVVLGAIARLTGFSIFK---FIRYIKEELL 261
Query: 286 IITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIGT---INMDGSALYLPCAVIFL 342
I+ T+S ++LP R+M+ + K+ + S L I T N+DG+++YL A +F+
Sbjct: 262 IV--LGTSSSESALP---RMMEKMEKLGCKKSVVGLVIPTGYSFNLDGTSIYLTMAAVFI 316
Query: 343 AQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINA----PIDDVTLLF 398
AQ N L G T+ L TS +A + + ++L +T++A P+ + L+
Sbjct: 317 AQATNTPLSIGHQITLLAVLLLTSKGAAGVTGSGF---IVLAATLSAVPHIPVAGLALIL 373
Query: 399 AVDWFVDRFRTPNNLLGDCYAVAVV 423
+D F+ R NL+G+ A VV
Sbjct: 374 GIDRFMSEARALTNLIGNGVATVVV 398
Score = 30.3 bits (69), Expect = 2.2
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 103 NTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTICSANATSAVKAMKR 162
+ L V+ F+++FG L L G+K + V DF +++ L ++ I A AM
Sbjct: 149 DILQVLLFAVLFGFALARL-GEKGKPVFDFIESLSHVLFG-IVNMIMKLAPIGAFGAMAF 206
Query: 163 NIG 165
IG
Sbjct: 207 TIG 209
>gnl|CDD|224736 COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General
function prediction only].
Length = 458
Score = 62.4 bits (152), Expect = 2e-10
Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 34/325 (10%)
Query: 108 IFFSLVFG-SVLGTLPGDKKQSVIDFFQTVYE-----TLLQMLLGTICS---ANATSAVK 158
I +L+FG + G + GD + + I QT T+ Q++L I A+ T A
Sbjct: 125 ILVALLFGLTAEGLVQGDAETARISEIQTYVGKVADLTIPQLILSLIPKNPFADLTGANP 184
Query: 159 AMKRNIGYRDGTNTLGVIFFSLVFG-SVLGTLPGD--KKQSVIDFFQTVYETLLQMLLGT 215
T+ + V+ F+ G + L D K + T+ +++++
Sbjct: 185 -----------TSIIAVVIFAAFLGIAALKLSKKDPEKGERFKAAIDTLQSIVMKLVRLV 233
Query: 216 IWFTPIGVGSVICGKIISIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNP 275
I TP GV +++ K+++ +N+ + S + + F+++ + I + NP
Sbjct: 234 IRLTPYGVLALMT-KVVATSNLEDIIKLGSFIVASYIAIFIMF---VVHGILLALNGVNP 289
Query: 276 YEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIG-TINMDGSALY 334
+Y+ K + AF + S +A++P+ + I+ F G TI +G A
Sbjct: 290 IKYFKKVWPVLTFAFTSRSSAATIPLNIETQTRKLGVPEGIANFAASFGATIGQNGCAGI 349
Query: 335 LPCA----VIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAP 390
P V IN + F I T+ +SF A + A +++ S + P
Sbjct: 350 YPAMLAVMVAPTVGINPLDPHF--IATLIGVVTISSFGVAGVGGGATFAALIVLSALGLP 407
Query: 391 IDDVTLLFAVDWFVDRFRTPNNLLG 415
+ V LL +++ +D RT N+ G
Sbjct: 408 VALVGLLISIEPLIDMGRTALNVSG 432
>gnl|CDD|173158 PRK14695, PRK14695, serine/threonine transporter SstT; Provisional.
Length = 319
Score = 60.1 bits (145), Expect = 5e-10
Identities = 57/266 (21%), Positives = 121/266 (45%), Gaps = 13/266 (4%)
Query: 171 NTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGK 230
N +G++ ++++FG + + K+ +T+ + +++ I P G+ ++ K
Sbjct: 60 NYIGILSWAVIFGIAMREASKNSKE----LLKTIADVTSKIVEWIINLAPFGILGLVF-K 114
Query: 231 IISIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYK-FSSAIITA 289
IS +G +L + ++ V L +++ LI F +R+NPY + + +TA
Sbjct: 115 TISDKGVG-SLANYGILLVLLVTTMLFVAPVVNPLIAFFFMRRNPYPLVWNCLRVSGVTA 173
Query: 290 FATASKSASLPITFRVMDDVAKMNPRISRFILPIG-TINMDGSALYLPCAVIFLAQINNI 348
F T S + ++P+ ++ D+ +NP +P+G TINM G A+ + + I
Sbjct: 174 FFTRSSATNIPVNMKLCHDLG-LNPDTYSVSIPLGSTINMAGVAITINLLTLVTVNTLGI 232
Query: 349 YLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTI----NAPIDDVTLLFAVDWFV 404
+ F F + + ++ ++ I +++L+ + CS + I V + F +
Sbjct: 233 PVDFATAFVLSVVAAISACGASGIAGGSLLLIPVACSLFGISNDIAIQIVGVGFVIGVIQ 292
Query: 405 DRFRTPNNLLGDCYAVAVVEHLSQKE 430
D T N D AV E+ + ++
Sbjct: 293 DSCETALNSSTDVLFTAVAEYAATRK 318
>gnl|CDD|184190 PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.
Length = 402
Score = 51.4 bits (124), Expect = 5e-07
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 171 NTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGK 230
N +G++ +++ G L K + E + Q++ I F PIG+ ++
Sbjct: 146 NYIGILAWAIGLGLALRHASDTTKN----VVNDLSEAVSQIVKWVIRFAPIGIFGLVAS- 200
Query: 231 IISIANIGL-ALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYK-FSSAIIT 288
++A G AL + + VG L L+++ LI F IR+NPY + + +T
Sbjct: 201 --TLAETGFSALAGYAQLLAVLVGCMLFVALVVNPLIVFWKIRRNPYPLVFTCLRESGVT 258
Query: 289 AFATASKSASLPITFRVMDDVAKMNPRISRFILPIG-TINMDGSA 332
AF T S +A++P+ + + + ++ +P+G TINM G+A
Sbjct: 259 AFFTRSSAANIPVNMALCEKL-GLDEDTYSVSIPLGATINMAGAA 302
>gnl|CDD|226159 COG3633, SstT, Na+/serine symporter [Amino acid transport and
metabolism].
Length = 407
Score = 46.6 bits (111), Expect = 2e-05
Identities = 53/231 (22%), Positives = 102/231 (44%), Gaps = 23/231 (9%)
Query: 171 NTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTIWFTPIGVGSVICGK 230
N +G++ +++ G L K V D + V +++ I F PIG+ ++
Sbjct: 146 NYIGILAWAIGLGLALRHASDTTKNLVNDLSEAV----SKIVKVVIRFAPIGIFGLVAST 201
Query: 231 IISIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPYEYYYK-FSSAIITA 289
+ L + L +L VG L L+++ LI + IR+NPY + +TA
Sbjct: 202 LAETGFGALWGYAQLLAVL--VGCMLFVALVVNPLIVYWKIRRNPYPLVLTCLRESGVTA 259
Query: 290 FATASKSASLPITFRVMDDVAKMNP-----RISRFILPIG-TINMDGSALYLPCAVIFLA 343
F T S +A++P+ M K+ +S +P+G TINM G+A+ + V+ LA
Sbjct: 260 FFTRSSAANIPVN---MALCKKLGLDEDTYSVS---IPLGATINMAGAAITI--TVLTLA 311
Query: 344 QINN--IYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPID 392
++ I + + + + ++ + +++L+ + CS D
Sbjct: 312 AVHTLGIPVDLPTALLLSVVASVCACGASGVAGGSLLLIPLACSLFGISND 362
>gnl|CDD|224616 COG1702, PhoH, Phosphate starvation-inducible protein PhoH,
predicted ATPase [Signal transduction mechanisms].
Length = 348
Score = 30.7 bits (70), Expect = 1.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 118 LGTLPGDKKQSVIDFFQTVYETLLQML 144
LG LPGD ++ V + + +Y+ L +L
Sbjct: 189 LGFLPGDLREKVDPYLRPLYDALYDIL 215
Score = 30.7 bits (70), Expect = 1.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 186 LGTLPGDKKQSVIDFFQTVYETLLQML 212
LG LPGD ++ V + + +Y+ L +L
Sbjct: 189 LGFLPGDLREKVDPYLRPLYDALYDIL 215
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 28.9 bits (65), Expect = 7.2
Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 166 YRDGTNTLGV---IFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLL---GTIWFT 219
YR+G G F+ + + QS++ FF ++ +L + F+
Sbjct: 902 YREGQKGQGFSTKTFWGWMLDGIY--------QSLVIFFFPMFAYILGDFVSSGSVDDFS 953
Query: 220 PIGVGSVICGKIISIANIGLALHQLSLFILCTVGG-FLIYQLIISQLIYFIIIRKN-PYE 277
+GV +I I L +++ + L T+ G L++ LI+ I+ P
Sbjct: 954 SVGVIVFTALVVIVNLKIALEINRWNWISLITIWGSILVW------LIFVIVYSSIFPSP 1007
Query: 278 YYYKFSSAIITAF 290
+YK + ++ F
Sbjct: 1008 AFYKAAPRVMGTF 1020
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 28.7 bits (65), Expect = 9.4
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 12/51 (23%)
Query: 221 IGVGSVICGK---------IISIANIGLALHQLSLFILCTVGGFLIYQLII 262
IG+GS++ G+ ++ + +GLAL SLF+L T ++
Sbjct: 282 IGIGSLLAGRLSGRHIELGLVPLGALGLAL---SLFLLPTAPSLASVLVLF 329
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.403
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,214,926
Number of extensions: 2434192
Number of successful extensions: 2623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2571
Number of HSP's successfully gapped: 100
Length of query: 472
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 372
Effective length of database: 6,502,202
Effective search space: 2418819144
Effective search space used: 2418819144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.2 bits)