RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy907
(472 letters)
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein,
helical hairpin, unwound RE transport protein; HET: PLM;
2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A*
2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Length = 422
Score = 177 bits (450), Expect = 8e-51
Identities = 83/349 (23%), Positives = 151/349 (43%), Gaps = 37/349 (10%)
Query: 105 LGVIFFSLVFGSVLGTL--PG---DKKQSVIDFFQTVYETLLQMLLGTICSANATSAVKA 159
L F++ G ++ L PG F L+ +LL + T+ A
Sbjct: 90 LLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIV----PTNPFGA 145
Query: 160 MKRNIGYRDGTNTLGVIFFSLVFGSVLGTLP-------GDKKQSVIDFFQTVYETLLQML 212
+ L IFF+++ G + L ++++D + E + +++
Sbjct: 146 LANG-------QVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIV 198
Query: 213 LGTIWFTPIGVGSVICGKIISIANIGL-ALHQLSLFILCTVGGFLIYQLIISQLIYFIII 271
G + + PIGV ++I +A G+ + +L+ G + L++ ++ I
Sbjct: 199 NGVMQYAPIGVFALIAY---VMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIY- 254
Query: 272 RKNPYEYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIG-TINMDG 330
+P + A++TAF T S S +LP+T RV + ++ I F LP+G TINMDG
Sbjct: 255 GIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKE-MGISEGIYSFTLPLGATINMDG 313
Query: 331 SALYLPCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAP 390
+ALY F+A +L G+ TI L + S +A +P A +++ M+ ++ P
Sbjct: 314 TALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLP 373
Query: 391 IDD------VTLLFAVDWFVDRFRTPNNLLGDCYAVAVVEHLSQKELNE 433
+ D ++ +D +D RT N+ GD A+V ++ L
Sbjct: 374 LTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAK-TEGTLVP 421
Score = 46.5 bits (111), Expect = 1e-05
Identities = 33/216 (15%), Positives = 64/216 (29%), Gaps = 55/216 (25%)
Query: 12 ASLINVILGITLALVIHPGNPEVKFNAGKAPAIKQINIMDGFLDMGRNLLPDNIFQAAFQ 71
S V LGI +A + +PG + Q + + + +++P N F A
Sbjct: 92 TSAFAVTLGIIMARLFNPG---AGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGAL-- 146
Query: 72 QTATTYIEDSSANATSAVKAMKRSIGYRDGTNTLGVIFFSLVFGSVLGTLP-------GD 124
AN L IFF+++ G + L
Sbjct: 147 -----------ANG-----------------QVLPTIFFAIILGIAITYLMNSENEKVRK 178
Query: 125 KKQSVIDFFQTVYETLLQML-----------LGTICSANATSAVKAMKRNIGYRDGTNTL 173
++++D + E + +++ I A V + + +
Sbjct: 179 SAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVG-ELAKVTAAVYV 237
Query: 174 GVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLL 209
G+ L+ V L I F + + +L
Sbjct: 238 GLTLQILL---VYFVLLKIYGIDPISFIKHAKDAML 270
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 1e-06
Identities = 68/481 (14%), Positives = 148/481 (30%), Gaps = 189/481 (39%)
Query: 60 LLPDNIFQAA------FQQTATTYIEDSSAN--ATSAVKAMKRSIGY-------RDGTNT 104
L+P F A F + E +A+ T+ + + + +GY
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 105 LGVIFFSLV-F------G----SVLGTLPGD------KKQSVIDFFQTVYETLLQMLLGT 147
V+ L F G ++ L + K + +I + ++
Sbjct: 81 DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI---KNYITAR--IMAKR 135
Query: 148 ICSANATSA-VKAMKRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQ-SVIDFF---Q 202
+ SA +A+ +G + +FG G Q + D+F +
Sbjct: 136 PFDKKSNSALFRAV------GEGNAQ---LV--AIFG-------G---QGNTDDYFEELR 174
Query: 203 TVYET---LLQMLLGTI--WFTPIGVGSVICGKIISIANIGLALHQ----------LSLF 247
+Y+T L+ L+ + + ++ K+ + GL + +
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ---GLNILEWLENPSNTPDKDYL 231
Query: 248 ILCTVGGFLIYQLIISQLIYFIIIRK----NPYEYYYKFSSA------IITAFATA-SKS 296
+ + LI +I QL ++++ K P E A ++TA A A + S
Sbjct: 232 LSIPISCPLI-GVI--QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 297 ASLPITFRVMDDVAKMNPRISRFILPIGTINMDGSALYLPCAVIFLAQINNIYLGFGEIF 356
+F + A+ L F
Sbjct: 289 WE---SF---FVSVRK-------------------------AITVL-------------F 304
Query: 357 TIGLACLFTSFSSAAIPSAAIVLVVMLCSTIN--APIDDVTLLFAVDWFVDRFRTPNNLL 414
IG+ C ++ + ++P + ++ N P +P +L
Sbjct: 305 FIGVRCY-EAYPNTSLPPS----ILEDSLENNEGVP------------------SP--ML 339
Query: 415 GDCYAVAVVEHLSQKELNEDLEDGHTNKGISLEDQAIKLSSIEVSTDEEKPQNGS---VI 471
+ +L+Q+++ + + TN + + +++S + NG+ V+
Sbjct: 340 -------SISNLTQEQVQDYVN--KTNSHLP-AGKQVEISLV----------NGAKNLVV 379
Query: 472 T 472
+
Sbjct: 380 S 380
Score = 40.8 bits (95), Expect = 0.001
Identities = 43/267 (16%), Positives = 77/267 (28%), Gaps = 90/267 (33%)
Query: 254 GFLIYQLIISQLIYFIIIRKNPYEYYYKF----SSAI---ITAFATASKSASLPITFRVM 306
GF I I+ NP F I +A + T ++
Sbjct: 1658 GFSILD----------IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF 1707
Query: 307 DDVAKMNPRISRFIL--PIGTINMDGS---ALYLPCAVIF-------LAQINNIYLGF-- 352
++ N + + G ++ AL L F L + + G
Sbjct: 1708 KEI---NEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL 1764
Query: 353 GEIFTIGLACL--FTSFSSA-------------AIP-------SAAIVLVVMLCSTINAP 390
GE + LA L S S A+P + ++ + + A
Sbjct: 1765 GE-YA-ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP--GRVAAS 1820
Query: 391 IDDVTLLFAVDWFVDRF--RTP------N-NLLGDCYAVA----VVEHLSQKELNEDLED 437
A+ + V+R RT N N+ Y A ++ ++ LN
Sbjct: 1821 FSQE----ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVT-NVLNF---- 1871
Query: 438 GHTNKGISLEDQAIKLSSIEVSTDEEK 464
++ Q I + ++ S E+
Sbjct: 1872 --------IKLQKIDIIELQKSLSLEE 1890
Score = 34.3 bits (78), Expect = 0.12
Identities = 42/249 (16%), Positives = 82/249 (32%), Gaps = 96/249 (38%)
Query: 13 SLINVILGITLALVIHPGNPEVKFNAGKAPAIKQINIMDGFLDMGRNLLPD------NIF 66
S++++++ + L IH G + GK I + + M + D IF
Sbjct: 1660 SILDIVINNPVNLTIHFGGEK-----GKR-------IRENYSAMIFETIVDGKLKTEKIF 1707
Query: 67 QAAFQQTATTYIEDSSA---NAT------------SAVKAMKR-------------SIG- 97
+ + + T+Y S +AT +A + +K S+G
Sbjct: 1708 KEINEHS-TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766
Query: 98 YRDGTNTL----GVIFFS----LVF--GSVLGT-LPGDKKQSVIDFFQTVYETLLQML-- 144
Y L V+ +VF G + +P D+ + + M+
Sbjct: 1767 Y----AALASLADVMSIESLVEVVFYRGMTMQVAVPRDE----------LGRSNYGMIAI 1812
Query: 145 -LGTICSANATSAVKAMKRNIGYRDGT-------NTLG---VIFFSLVFGSVLGTLPG-D 192
G + ++ + A++ + +G R G N V + G L D
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA--A-------GDLRALD 1863
Query: 193 KKQSVIDFF 201
+V++F
Sbjct: 1864 TVTNVLNFI 1872
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 1e-04
Identities = 52/347 (14%), Positives = 101/347 (29%), Gaps = 110/347 (31%)
Query: 2 TPSEFTGY------PHASLINVILGITLA--LVIH--PGNPEVKFNAGK----APAIKQI 47
F Y P+ L +L + A ++I G +GK
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-------SGKTWVALDVCLSY 174
Query: 48 NIMDGF------LDMGRNLLPDNIF---QAAFQQTATTYIE--DSSANAT----SAVKAM 92
+ L++ P+ + Q Q + D S+N S +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 93 KRSIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLL--QMLLGT--- 147
+R + + N L LV +V + K + F L ++LL T
Sbjct: 235 RRLLKSKPYENCL------LVLLNV-----QNAK--AWNAFN------LSCKILLTTRFK 275
Query: 148 ----ICSANATSAVKAMKRNIGYRDGTNTLGVIFFSLVFGSVLGTLPGDKKQ------SV 197
SA T+ + ++ + LP + S+
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTP-DEVKSL--LLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 198 I-----DFFQTVYETLLQMLLGTIWFTPIGVGSVICGKII--SIANIGLALHQ-----LS 245
I D T ++ + + II S+ + A ++ LS
Sbjct: 333 IAESIRDGLAT-WDNWKHVNCDKL------------TTIIESSLNVLEPAEYRKMFDRLS 379
Query: 246 LF---------ILCTVGGFLIY---QLIISQLIYFIIIRKNPYEYYY 280
+F +L + +I +++++L + ++ K P E
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Score = 37.9 bits (87), Expect = 0.009
Identities = 31/254 (12%), Positives = 67/254 (26%), Gaps = 68/254 (26%)
Query: 262 ISQLIY-FIIIRKNPYEYYYKFSSA--------IITAFATASKSASLPITF------RVM 306
+S + F + E KF +++ T + S+ R+
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 307 DDVAKMNPR-ISRFILPIGTINMDGSALYLPCAVIFLAQINNIYL----GFGE------- 354
+D +SR + P + AL L N+ + G G+
Sbjct: 121 NDNQVFAKYNVSR-LQPYLKLR---QALLE------LRPAKNVLIDGVLGSGKTWVALDV 170
Query: 355 IFTIGLACLFT------SFSSAAIPSAAIVLVVMLCSTINAPID-----DVTLLFAVDWF 403
+ + C + + P + ++ L I+ + +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 404 VDRFRT-------PNNLLGDCYAVAVVEHLSQKELNEDLEDGH-----TNKGISLEDQAI 451
R N LL V+ ++ + + T + + D
Sbjct: 231 QAELRRLLKSKPYENCLL-------VLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLS 282
Query: 452 KLSSIEVSTDEEKP 465
++ +S D
Sbjct: 283 AATTTHISLDHHSM 296
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.053
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 447 EDQAI-KL-SSIEVSTDEEKPQ---NGSV 470
E QA+ KL +S+++ D+ P ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 31.0 bits (71), Expect = 0.47
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 100 DGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFF 133
+ GV+ FS GS++ + ++ +
Sbjct: 16 QSSGENGVVVFS--LGSMVSNMTEERANVIASAL 47
Score = 31.0 bits (71), Expect = 0.47
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 168 DGTNTLGVIFFSLVFGSVLGTLPGDKKQSVIDFF 201
+ GV+ FS GS++ + ++ +
Sbjct: 16 QSSGENGVVVFS--LGSMVSNMTEERANVIASAL 47
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0
junctions, AQP0, lens MIP, lipid-protein interac
membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries}
SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Length = 263
Score = 28.4 bits (64), Expect = 5.0
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 212 LLGTIWFTPIGVGSVICGKIISIANIGLAL-HQLSLFILCTVGG 254
T+++ G+G+ + + + +AL L+L L G
Sbjct: 17 FFATLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVG 60
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water
transport, X-RAY diffraction, lipid, phosphatidylserine,
PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo
sapiens}
Length = 266
Score = 28.5 bits (64), Expect = 5.1
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 212 LLGTIWFTPIGVGSVICGKIISIANIGLAL-HQLSLFILCTVGG 254
L T+ F G+GS + + +AL L++ L G
Sbjct: 19 FLATLIFVFFGLGSALKWPSALPTILQIALAFGLAIGTLAQALG 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.403
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,099,571
Number of extensions: 432902
Number of successful extensions: 720
Number of sequences better than 10.0: 1
Number of HSP's gapped: 709
Number of HSP's successfully gapped: 21
Length of query: 472
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 375
Effective length of database: 3,993,456
Effective search space: 1497546000
Effective search space used: 1497546000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.9 bits)