RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy907
         (472 letters)



>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 405

 Score =  118 bits (297), Expect = 5e-30
 Identities = 79/334 (23%), Positives = 139/334 (41%), Gaps = 33/334 (9%)

Query: 104 TLGVIFFSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQMLLGTICSANATSAVKAMKRN 163
           TLG+I   L        L    +Q        +   LL ++      A A          
Sbjct: 87  TLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANG-------- 138

Query: 164 IGYRDGTNTLGVIFFSLVFGSVLGTLPGDKK-------QSVIDFFQTVYETLLQMLLGTI 216
                    L  IFF+++ G  +  L   +        ++++D    + E + +++ G +
Sbjct: 139 -------QVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVM 191

Query: 217 WFTPIGVGSVICGKIISIANIGLALHQLSLFILCTVGGFLIYQLIISQLIYFIIIRKNPY 276
            + PIGV ++I   +       +        +   V   L  Q+++   +   I   +P 
Sbjct: 192 QYAPIGVFALIAYVMAEQGVHVVGE---LAKVTAAVYVGLTLQILLVYFVLLKIYGIDPI 248

Query: 277 EYYYKFSSAIITAFATASKSASLPITFRVMDDVAKMNPRISRFILPIG-TINMDGSALYL 335
            +      A++TAF T S S +LP+T RV  +   ++  I  F LP+G TINMDG+ALY 
Sbjct: 249 SFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKE-MGISEGIYSFTLPLGATINMDGTALYQ 307

Query: 336 PCAVIFLAQINNIYLGFGEIFTIGLACLFTSFSSAAIPSAAIVLVVMLCSTINAPIDD-- 393
                F+A     +L  G+  TI L  +  S  +A +P A  +++ M+  ++  P+ D  
Sbjct: 308 GVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPN 367

Query: 394 ----VTLLFAVDWFVDRFRTPNNLLGDCYAVAVV 423
                 ++  +D  +D  RT  N+ GD    A+V
Sbjct: 368 VAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIV 401


>d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus
           horikoshii, PH1647 [TaxId: 53953]}
          Length = 144

 Score = 27.2 bits (59), Expect = 2.9
 Identities = 12/107 (11%), Positives = 25/107 (23%), Gaps = 3/107 (2%)

Query: 41  APAIKQINIMDGFLDMGRNLLPDNIFQAAFQQTATTYIEDSSANATSAVKAMKRSIGYRD 100
           +  ++ +        +   +LPD+               D       +    K       
Sbjct: 33  SIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSAFGDKDYAHKFV 92

Query: 101 GTNTLGVIF---FSLVFGSVLGTLPGDKKQSVIDFFQTVYETLLQML 144
                G          +G  +  + G        F   V   L +M+
Sbjct: 93  NLLFHGTTIKPGRPFGYGEKVFIMSGYPVSVFAQFNLFVKHALAKMV 139


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,698,494
Number of extensions: 77324
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 14
Length of query: 472
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 383
Effective length of database: 1,185,626
Effective search space: 454094758
Effective search space used: 454094758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.4 bits)