BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9076
(61 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|91088079|ref|XP_968378.1| PREDICTED: similar to mediator complex, subunit, putative
[Tribolium castaneum]
gi|270012095|gb|EFA08543.1| hypothetical protein TcasGA2_TC006198 [Tribolium castaneum]
Length = 297
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 49/55 (89%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNGT NASN+K+AK QEQL+TI++LFKRLRLIYEKCNE CQ+QGMEYTHIE
Sbjct: 177 PPNGTPQSSNASNEKKAKVQEQLRTIRVLFKRLRLIYEKCNENCQLQGMEYTHIE 231
>gi|357605923|gb|EHJ64836.1| putative mediator complex, subunit [Danaus plexippus]
Length = 286
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 43/55 (78%), Positives = 47/55 (85%), Gaps = 2/55 (3%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNGT NASNDK+AK QEQL+TI+LLFKRLRLIYEKCNE C QGMEYTH+E
Sbjct: 158 PPNGTQHGENASNDKKAKMQEQLRTIRLLFKRLRLIYEKCNETC--QGMEYTHME 210
>gi|389614986|dbj|BAM20493.1| mediator complex subunit 30 [Papilio polytes]
Length = 209
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 47/55 (85%), Gaps = 2/55 (3%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNGT NASNDK+AK QEQL+TI+LLFKRLRLIYEKCNE C QGMEYTH+E
Sbjct: 90 PPNGTQHGENASNDKKAKMQEQLRTIRLLFKRLRLIYEKCNETC--QGMEYTHME 142
>gi|156547792|ref|XP_001606138.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Nasonia vitripennis]
Length = 279
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 45/55 (81%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNGT N SNDK+ K QEQLKT +LFKRLR+IYEKCNE CQ+QGMEYTHIE
Sbjct: 159 PPNGTSQGQNLSNDKKLKVQEQLKTTTVLFKRLRVIYEKCNENCQLQGMEYTHIE 213
>gi|328703399|ref|XP_003242189.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Acyrthosiphon pisum]
Length = 222
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 46/55 (83%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNGT + N SN++R K Q+QL+ IKLLFKRLR+IYEKCN+ CQ+QGMEY HIE
Sbjct: 102 PPNGTPTGANMSNERRIKMQDQLRNIKLLFKRLRIIYEKCNDSCQLQGMEYMHIE 156
>gi|239791974|dbj|BAH72383.1| ACYPI43885 [Acyrthosiphon pisum]
Length = 222
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 46/55 (83%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNGT + N SN++R K Q+QL+ IKLLFKRLR+IYEKCN+ CQ+QGMEY HIE
Sbjct: 102 PPNGTPTGANMSNERRIKMQDQLRNIKLLFKRLRIIYEKCNDSCQLQGMEYMHIE 156
>gi|340719685|ref|XP_003398278.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Bombus terrestris]
Length = 291
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 46/55 (83%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNG N +N+K+ K QEQL+T+KLLF+RLR+IYEKCNE CQ+QGMEYTHIE
Sbjct: 171 PPNGMAQGTNLANEKKNKVQEQLRTLKLLFRRLRVIYEKCNENCQLQGMEYTHIE 225
>gi|350410778|ref|XP_003489136.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Bombus impatiens]
Length = 294
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 46/55 (83%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNG N +N+K+ K Q+QLKT+KLLF+RLR+IYEKCNE CQ+QGMEYTHIE
Sbjct: 174 PPNGMAQGANLANEKKNKVQDQLKTLKLLFRRLRVIYEKCNENCQLQGMEYTHIE 228
>gi|307198647|gb|EFN79483.1| Mediator of RNA polymerase II transcription subunit 30
[Harpegnathos saltator]
Length = 294
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 45/55 (81%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNGT N +N+K+ K EQL+ +K+LFKRLRLIYEKCNE CQ+QGMEYTHIE
Sbjct: 173 PPNGTTQGANMANEKKTKVYEQLRMLKMLFKRLRLIYEKCNENCQLQGMEYTHIE 227
>gi|332026352|gb|EGI66481.1| Mediator of RNA polymerase II transcription subunit 30 [Acromyrmex
echinatior]
Length = 265
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 45/55 (81%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNGT N +N+K+ K EQL+ IK++FKRLRLIYEKCNE CQ+QGMEYTHIE
Sbjct: 173 PPNGTAQGANMANEKKKKVYEQLEMIKIMFKRLRLIYEKCNENCQLQGMEYTHIE 227
>gi|307181601|gb|EFN69141.1| Mediator of RNA polymerase II transcription subunit 30 [Camponotus
floridanus]
Length = 236
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 45/55 (81%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNGT N +N+K+ K EQLK IK++FKRLR+IYEKCNE CQ+QGMEYTHIE
Sbjct: 116 PPNGTAQGANMANEKKIKIFEQLKIIKMMFKRLRIIYEKCNENCQLQGMEYTHIE 170
>gi|322794842|gb|EFZ17789.1| hypothetical protein SINV_15541 [Solenopsis invicta]
Length = 255
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 45/55 (81%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNGT N +N+K+ K EQL+ IK++FKRLRLIYEKCNE CQ+QGMEYTHIE
Sbjct: 135 PPNGTTQGSNIANEKKKKVYEQLEMIKMMFKRLRLIYEKCNENCQLQGMEYTHIE 189
>gi|345481930|ref|XP_003424486.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Nasonia vitripennis]
Length = 291
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNG N +++ + QE +KT LFKRLR IYEKCNE CQ+QGMEYT+IE
Sbjct: 170 PPNGNSQGQNLCVERKKRVQELVKTTTELFKRLRYIYEKCNENCQLQGMEYTYIE 224
>gi|380017607|ref|XP_003692744.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Apis florea]
Length = 294
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 46/55 (83%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PP GT N +N+++ K QEQL+T+KLLFKRLRLIYEKCNE CQ+QGMEYTHIE
Sbjct: 174 PPTGTAQGANLANERKNKVQEQLRTLKLLFKRLRLIYEKCNENCQLQGMEYTHIE 228
>gi|110760438|ref|XP_396322.2| PREDICTED: mediator of RNA polymerase II transcription subunit 30
isoform 1 [Apis mellifera]
Length = 294
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 46/55 (83%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PP GT N +N+++ K QEQL+T+KLLFKRLRLIYEKCNE CQ+QGMEYTHIE
Sbjct: 174 PPTGTAQGANLANERKNKVQEQLRTLKLLFKRLRLIYEKCNENCQLQGMEYTHIE 228
>gi|170037102|ref|XP_001846399.1| thyroid hormone receptor-associated protein 6 [Culex
quinquefasciatus]
gi|167880106|gb|EDS43489.1| thyroid hormone receptor-associated protein 6 [Culex
quinquefasciatus]
Length = 292
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 47/55 (85%), Gaps = 1/55 (1%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNGT L ASNDK+AK QEQ +TI+LLFKRLRL+Y+KCN+ CQ QGMEYTH+E
Sbjct: 175 PPNGTNQGLTASNDKKAKVQEQFRTIRLLFKRLRLLYDKCNDFCQ-QGMEYTHVE 228
>gi|383852439|ref|XP_003701735.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Megachile rotundata]
Length = 287
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 46/55 (83%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNG + SN+K+ K Q+QL+T+KLLFKRLRLIYEKCNE CQ+QGMEYTHIE
Sbjct: 167 PPNGMAQGASLSNEKKTKVQDQLRTLKLLFKRLRLIYEKCNENCQLQGMEYTHIE 221
>gi|157115543|ref|XP_001658256.1| mediator complex, subunit, putative [Aedes aegypti]
gi|121955980|sp|Q172Y1.1|MED30_AEDAE RecName: Full=Mediator of RNA polymerase II transcription subunit
30; AltName: Full=Mediator complex subunit 30
gi|108876873|gb|EAT41098.1| AAEL007230-PA [Aedes aegypti]
Length = 306
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/55 (70%), Positives = 49/55 (89%), Gaps = 1/55 (1%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNGT + L++SNDK+AK QEQ +TI+LLFKRLRL+Y+KCN+ CQ QGMEYTH+E
Sbjct: 189 PPNGTNAGLSSSNDKKAKVQEQFRTIRLLFKRLRLLYDKCNDNCQ-QGMEYTHVE 242
>gi|312378950|gb|EFR25374.1| hypothetical protein AND_09325 [Anopheles darlingi]
Length = 288
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/55 (69%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNGT +SNDK+AK QEQ +TI+LLFKRLRL+Y+KCN+ CQ QGMEYTH+E
Sbjct: 171 PPNGTNQGQLSSNDKKAKVQEQFRTIRLLFKRLRLLYDKCNDTCQ-QGMEYTHME 224
>gi|118788735|ref|XP_316947.3| AGAP008496-PA [Anopheles gambiae str. PEST]
gi|116122888|gb|EAA12731.3| AGAP008496-PA [Anopheles gambiae str. PEST]
Length = 276
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 38/55 (69%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PPNGT +SNDK+AK QEQ +TI+LLFKRLRL+Y+KCN+ CQ QGMEYTH+E
Sbjct: 212 PPNGTNQGQLSSNDKKAKVQEQFRTIRLLFKRLRLLYDKCNDNCQ-QGMEYTHVE 265
>gi|289739433|gb|ADD18464.1| mediator complex subunit 30 [Glossina morsitans morsitans]
Length = 376
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 10 NASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECC--QVQGMEYTHIE 55
N N K QE +TI+LLFKR+RLIYE+CN+ C QGMEYT +E
Sbjct: 255 NRDNSTVKKVQEHFRTIRLLFKRMRLIYERCNDGCLGYPQGMEYTTVE 302
>gi|321470675|gb|EFX81650.1| hypothetical protein DAPPUDRAFT_49990 [Daphnia pulex]
Length = 188
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQ 45
PPNG+ + + DK+ K +QLK +K+LFKRLR+IY KCNE Q
Sbjct: 69 PPNGSAQSTSVAVDKKNKLDDQLKMVKVLFKRLRIIYNKCNENSQ 113
>gi|241781170|ref|XP_002400251.1| hypothetical protein IscW_ISCW015385 [Ixodes scapularis]
gi|215510695|gb|EEC20148.1| hypothetical protein IscW_ISCW015385 [Ixodes scapularis]
Length = 141
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PP G S + ++R K Q+ L+T+ +LFKRL +Y C++C G +YT IE
Sbjct: 2 PPTGVASSMAGQEERRLKLQDTLRTVGMLFKRLHRVYNICSDCGPSAGSQYTPIE 56
>gi|291232549|ref|XP_002736228.1| PREDICTED: mediator complex subunit 30-like [Saccoglossus
kowalevskii]
Length = 178
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG S ++ K QE L+ I +LFK+LRL+YEKCNE C G+++T+ E
Sbjct: 59 PNGVSSSPANHQERHVKLQEYLRNISMLFKKLRLVYEKCNENC--AGLDHTNPE 110
>gi|348519385|ref|XP_003447211.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Oreochromis niloticus]
Length = 183
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECC 44
PNG N D+ K QE L+T+ +LF++LRL+Y+KCNE C
Sbjct: 65 PNGVTYHPNTHQDRLGKLQEHLRTLSVLFRKLRLVYDKCNENC 107
>gi|41152293|ref|NP_957011.1| mediator of RNA polymerase II transcription subunit 30 [Danio
rerio]
gi|82187018|sp|Q6PC45.1|MED30_DANRE RecName: Full=Mediator of RNA polymerase II transcription subunit
30; AltName: Full=Mediator complex subunit 30; AltName:
Full=Thyroid hormone receptor-associated protein 6
homolog
gi|37589665|gb|AAH59478.1| Thyroid hormone receptor associated protein 6 [Danio rerio]
Length = 174
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECC 44
PNG N D+ K QE L+T+ +LF++LRL+Y+KCNE C
Sbjct: 56 PNGVTYHPNTHQDRLGKLQEHLRTLSVLFRKLRLVYDKCNENC 98
>gi|410911666|ref|XP_003969311.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Takifugu rubripes]
Length = 179
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECC 44
PNG N D+ AK QE L+ + +LF++LRL+Y+KCNE C
Sbjct: 62 PNGVTYHPNTHQDRLAKLQEHLRMLSVLFRKLRLVYDKCNENC 104
>gi|432094720|gb|ELK26200.1| Mediator of RNA polymerase II transcription subunit 30 [Myotis
davidii]
Length = 188
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIEIS 57
PNG D+ AK Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E S
Sbjct: 61 PNGVTYHTGTYQDRLAKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVEAS 114
>gi|432881478|ref|XP_004073802.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Oryzias latipes]
Length = 172
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECC 44
PNG N D+ K QE L+ + +LF++LRL+Y+KCNE C
Sbjct: 54 PNGVTYHPNTHQDRLGKLQEHLRMLSVLFRKLRLVYDKCNENC 96
>gi|190576631|gb|ACE79116.1| mediator of RNA polymerase II transcription subunit 30 (predicted)
[Sorex araneus]
Length = 178
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ AK Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLAKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|118601828|ref|NP_001073086.1| mediator of RNA polymerase II transcription subunit 30 [Bos taurus]
gi|108861914|sp|Q2YDF2.1|MED30_BOVIN RecName: Full=Mediator of RNA polymerase II transcription subunit
30; AltName: Full=Mediator complex subunit 30; AltName:
Full=Thyroid hormone receptor-associated protein 6;
AltName: Full=Thyroid hormone receptor-associated
protein complex 25 kDa component; Short=Trap25
gi|82571534|gb|AAI10251.1| Mediator complex subunit 30 [Bos taurus]
gi|296480563|tpg|DAA22678.1| TPA: mediator of RNA polymerase II transcription subunit 30 [Bos
taurus]
Length = 193
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ AK Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLAKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|345306346|ref|XP_001509173.2| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Ornithorhynchus anatinus]
Length = 232
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIEIS 57
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C G++ IE+S
Sbjct: 116 PNGVTYHTGTYQDRLGKLQDHLRQLSILFRKLRLVYDKCNENC--AGLDPVPIEVS 169
>gi|195012660|ref|XP_001983720.1| GH16043 [Drosophila grimshawi]
gi|193897202|gb|EDV96068.1| GH16043 [Drosophila grimshawi]
Length = 312
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
Query: 13 NDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
N+ K QE +TI+LLFKR+R+IYEKCN+ GM+Y + E
Sbjct: 209 NNTEKKVQEYFRTIRLLFKRVRIIYEKCNDA----GMDYMNAE 247
>gi|350538625|ref|NP_001232580.1| putative TRAP/Mediator complex component TRAP25 variant 2
[Taeniopygia guttata]
gi|197127512|gb|ACH44010.1| putative TRAP/Mediator complex component TRAP25 variant 2
[Taeniopygia guttata]
Length = 187
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ AK QE L+ + +LF++LRL+Y+KCNE C G++ IE
Sbjct: 60 PNGVTYHTATYQDRLAKLQEHLRQLSILFRKLRLVYDKCNENC--AGLDPVPIE 111
>gi|355702046|gb|AES01801.1| mediator complex subunit 30 [Mustela putorius furo]
Length = 177
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ AK Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLAKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|73974543|ref|XP_539144.2| PREDICTED: mediator of RNA polymerase II transcription subunit 30
[Canis lupus familiaris]
Length = 178
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ AK Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLAKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|311276445|ref|XP_003135209.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Sus scrofa]
gi|417396569|gb|JAA45318.1| Putative mediator of rna polymerase ii transcription subunit
30-like protein [Desmodus rotundus]
Length = 178
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ AK Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLAKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|301789579|ref|XP_002930206.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Ailuropoda melanoleuca]
Length = 178
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ AK Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLAKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|149721622|ref|XP_001496463.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Equus caballus]
Length = 178
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ AK Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLAKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|410987686|ref|XP_004000126.1| PREDICTED: mediator of RNA polymerase II transcription subunit 30
[Felis catus]
Length = 178
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ AK Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLAKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|440904843|gb|ELR55303.1| Mediator of RNA polymerase II transcription subunit 30 [Bos
grunniens mutus]
Length = 195
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIEIS 57
PNG D+ AK Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E S
Sbjct: 61 PNGVTYHTGTYQDRLAKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVEAS 114
>gi|426236149|ref|XP_004012036.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30, partial [Ovis aries]
Length = 163
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ AK Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 47 PNGVTYHTGTYQDRLAKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 98
>gi|281339382|gb|EFB14966.1| hypothetical protein PANDA_020574 [Ailuropoda melanoleuca]
Length = 188
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIEISK 58
PNG D+ AK Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E S+
Sbjct: 61 PNGVTYHTGTYQDRLAKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVEASR 115
>gi|449278614|gb|EMC86415.1| Mediator of RNA polymerase II transcription subunit 30 [Columba
livia]
Length = 179
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K QE L+ + +LF++LRL+Y+KCNE C G++ IE
Sbjct: 60 PNGVTYHTGTYQDRLGKLQEHLRQLSILFRKLRLVYDKCNENC--AGLDPVPIE 111
>gi|195376649|ref|XP_002047105.1| GJ13243 [Drosophila virilis]
gi|194154263|gb|EDW69447.1| GJ13243 [Drosophila virilis]
Length = 318
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
Query: 13 NDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
N+ K QE +TI+LLFKR+R+IYEKCN+ GM+Y + E
Sbjct: 215 NNTEKKVQEYFRTIRLLFKRVRIIYEKCNDA----GMDYMNAE 253
>gi|354471409|ref|XP_003497935.1| PREDICTED: hypothetical protein LOC100751133 [Cricetulus griseus]
Length = 365
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQG 48
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C G
Sbjct: 248 PNGVTYHTGTYQDRLTKLQDHLRQLSILFRKLRLVYDKCNESCGGMG 294
>gi|327269410|ref|XP_003219487.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Anolis carolinensis]
Length = 179
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K QE L+ + +LF++LRL+Y+KCNE C G++ IE
Sbjct: 60 PNGVTYHTGTYQDRLGKLQEHLRQLSILFRKLRLVYDKCNENC--AGLDPIPIE 111
>gi|50731875|ref|XP_418397.1| PREDICTED: mediator of RNA polymerase II transcription subunit 30
isoform 2 [Gallus gallus]
gi|118087314|ref|XP_001232202.1| PREDICTED: mediator of RNA polymerase II transcription subunit 30
isoform 1 [Gallus gallus]
gi|326918018|ref|XP_003205290.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Meleagris gallopavo]
Length = 179
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K QE L+ + +LF++LRL+Y+KCNE C G++ IE
Sbjct: 60 PNGVTYHTGTYQDRLGKLQEHLRQLSILFRKLRLVYDKCNENC--AGLDPIPIE 111
>gi|195336362|ref|XP_002034809.1| GM14266 [Drosophila sechellia]
gi|194127902|gb|EDW49945.1| GM14266 [Drosophila sechellia]
Length = 316
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 13 NDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
N+ K QE +TI+LLFKR+R+IYEKCN+ GM+Y E
Sbjct: 213 NNSEKKVQEYFRTIRLLFKRVRIIYEKCNDA----GMDYMSAE 251
>gi|195552504|ref|XP_002076489.1| GD17613 [Drosophila simulans]
gi|194202100|gb|EDX15676.1| GD17613 [Drosophila simulans]
Length = 292
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 13 NDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
N+ K QE +TI+LLFKR+R+IYEKCN+ GM+Y E
Sbjct: 189 NNSEKKVQEYFRTIRLLFKRVRIIYEKCNDA----GMDYMSAE 227
>gi|194748495|ref|XP_001956681.1| GF10057 [Drosophila ananassae]
gi|190623963|gb|EDV39487.1| GF10057 [Drosophila ananassae]
Length = 315
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 13 NDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
N+ K QE +TI+LLFKR+R+IYEKCN+ GM+Y E
Sbjct: 212 NNTEKKVQEYFRTIRLLFKRVRIIYEKCNDA----GMDYMSAE 250
>gi|194864640|ref|XP_001971038.1| GG14652 [Drosophila erecta]
gi|190652821|gb|EDV50064.1| GG14652 [Drosophila erecta]
Length = 326
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 13 NDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
N+ K QE +TI+LLFKR+R+IYEKCN+ GM+Y E
Sbjct: 223 NNSEKKVQEYFRTIRLLFKRVRIIYEKCNDA----GMDYMSAE 261
>gi|195428660|ref|XP_002062387.1| GK16688 [Drosophila willistoni]
gi|194158472|gb|EDW73373.1| GK16688 [Drosophila willistoni]
Length = 300
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
Query: 13 NDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
N+ K QE +TI+LLFKR+R+IYEKCN+ GM+Y + E
Sbjct: 197 NNTEKKVQEYFRTIRLLFKRVRIIYEKCNDA----GMDYMNAE 235
>gi|195490160|ref|XP_002093026.1| GE21010 [Drosophila yakuba]
gi|194179127|gb|EDW92738.1| GE21010 [Drosophila yakuba]
Length = 323
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 13 NDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
N+ K QE +TI+LLFKR+R+IYEKCN+ GM+Y E
Sbjct: 220 NNTEKKVQEYFRTIRLLFKRVRIIYEKCNDA----GMDYMSAE 258
>gi|221219410|gb|ACM08366.1| Mediator of RNA polymerase II transcription subunit 30 [Salmo
salar]
Length = 171
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECC 44
PNG + D+ K QE L+ + +LF++LRL+Y+KCNE C
Sbjct: 53 PNGVTYHPSTHQDRLGKLQEHLRMLSVLFRKLRLVYDKCNENC 95
>gi|195126226|ref|XP_002007575.1| GI12307 [Drosophila mojavensis]
gi|193919184|gb|EDW18051.1| GI12307 [Drosophila mojavensis]
Length = 318
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
Query: 13 NDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
N+ K QE +TI+LLFKR+R+IYEKCN+ GM+Y + E
Sbjct: 215 NNTEKKVQEYFRTIRLLFKRVRIIYEKCNDA----GMDYMNAE 253
>gi|19923008|ref|NP_612046.1| mediator complex subunit 30 [Drosophila melanogaster]
gi|74948859|sp|Q9W0P3.1|MED30_DROME RecName: Full=Mediator of RNA polymerase II transcription subunit
30; AltName: Full=Mediator complex subunit 30; AltName:
Full=dMED20; AltName: Full=dTRAP25
gi|7291985|gb|AAF47400.1| mediator complex subunit 30 [Drosophila melanogaster]
gi|16769912|gb|AAL29175.1| SD10560p [Drosophila melanogaster]
gi|220944510|gb|ACL84798.1| MED30-PA [synthetic construct]
gi|220954484|gb|ACL89785.1| MED30-PA [synthetic construct]
Length = 318
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 13 NDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
N K QE +TI+LLFKR+R+IYEKCN+ GM+Y E
Sbjct: 215 NSSEKKVQEYFRTIRLLFKRVRIIYEKCNDA----GMDYMSAE 253
>gi|351697329|gb|EHB00248.1| Mediator of RNA polymerase II transcription subunit 30
[Heterocephalus glaber]
Length = 178
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLTKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|19882231|ref|NP_081488.1| mediator of RNA polymerase II transcription subunit 30 [Mus
musculus]
gi|81880383|sp|Q9CQI9.1|MED30_MOUSE RecName: Full=Mediator of RNA polymerase II transcription subunit
30; AltName: Full=Mediator complex subunit 30; AltName:
Full=Thyroid hormone receptor-associated protein 6;
AltName: Full=Thyroid hormone receptor-associated
protein complex 25 kDa component; Short=Trap25
gi|12841479|dbj|BAB25226.1| unnamed protein product [Mus musculus]
gi|12847011|dbj|BAB27401.1| unnamed protein product [Mus musculus]
gi|18044886|gb|AAH20113.1| Mediator complex subunit 30 [Mus musculus]
gi|74226728|dbj|BAE27012.1| unnamed protein product [Mus musculus]
gi|148697306|gb|EDL29253.1| thyroid hormone receptor associated protein 6 [Mus musculus]
Length = 178
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLTKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|149066398|gb|EDM16271.1| thyroid hormone receptor associated protein 6 (predicted), isoform
CRA_a [Rattus norvegicus]
Length = 178
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLTKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|344272772|ref|XP_003408205.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Loxodonta africana]
Length = 182
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 65 PNGVTYHTGTYQDRLTKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 116
>gi|444732431|gb|ELW72726.1| Mediator of RNA polymerase II transcription subunit 30 [Tupaia
chinensis]
Length = 178
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLTKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|348588245|ref|XP_003479877.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Cavia porcellus]
Length = 178
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLTKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|291388444|ref|XP_002710789.1| PREDICTED: TRAP/Mediator complex component TRAP25 [Oryctolagus
cuniculus]
Length = 178
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLTKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|194474020|ref|NP_001124011.1| mediator of RNA polymerase II transcription subunit 30 [Rattus
norvegicus]
gi|149066399|gb|EDM16272.1| thyroid hormone receptor associated protein 6 (predicted), isoform
CRA_b [Rattus norvegicus]
Length = 143
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLTKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|395512317|ref|XP_003760387.1| PREDICTED: mediator of RNA polymerase II transcription subunit 30
[Sarcophilus harrisii]
Length = 179
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C G++ IE
Sbjct: 60 PNGVTYHTGTYQDRLGKLQDHLRQLSILFRKLRLVYDKCNENC--AGLDPIPIE 111
>gi|126322249|ref|XP_001370031.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Monodelphis domestica]
Length = 179
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C G++ IE
Sbjct: 60 PNGVTYHTGTYQDRLGKLQDHLRQLSILFRKLRLVYDKCNENC--AGLDPIPIE 111
>gi|431901713|gb|ELK08590.1| Mediator of RNA polymerase II transcription subunit 30 [Pteropus
alecto]
Length = 193
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIEIS 57
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C GM+ E S
Sbjct: 61 PNGVTYHTGTYQDRLTKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPAEAS 114
>gi|119612377|gb|EAW91971.1| thyroid hormone receptor associated protein 6, isoform CRA_b [Homo
sapiens]
Length = 184
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|62857793|ref|NP_001017241.1| mediator complex subunit 30 [Xenopus (Silurana) tropicalis]
gi|169642616|gb|AAI60461.1| hypothetical protein LOC549995 [Xenopus (Silurana) tropicalis]
Length = 184
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K QE L+ + +LF++LRL+Y+KCNE C G++ IE
Sbjct: 65 PNGVTYHTVTYQDRLGKLQEHLRQLSILFRKLRLVYDKCNENC--AGLDPVPIE 116
>gi|147901191|ref|NP_001090307.1| mediator of RNA polymerase II transcription subunit 30 [Xenopus
laevis]
gi|123885682|sp|Q0IHI6.1|MED30_XENLA RecName: Full=Mediator of RNA polymerase II transcription subunit
30; AltName: Full=Mediator complex subunit 30
gi|114107762|gb|AAI23140.1| Trap25 protein [Xenopus laevis]
Length = 184
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K QE L+ + +LF++LRL+Y+KCNE C G++ IE
Sbjct: 65 PNGVTYHTVTYQDRLGKLQEHLRQLSILFRKLRLVYDKCNENC--AGLDPVPIE 116
>gi|297683525|ref|XP_002819427.1| PREDICTED: mediator of RNA polymerase II transcription subunit 30
[Pongo abelii]
Length = 178
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|403283506|ref|XP_003933160.1| PREDICTED: mediator of RNA polymerase II transcription subunit 30
[Saimiri boliviensis boliviensis]
Length = 178
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|18087811|ref|NP_542382.1| mediator of RNA polymerase II transcription subunit 30 [Homo
sapiens]
gi|388453593|ref|NP_001253026.1| mediator of RNA polymerase II transcription subunit 30 [Macaca
mulatta]
gi|114621427|ref|XP_528281.2| PREDICTED: mediator of RNA polymerase II transcription subunit 30
isoform 2 [Pan troglodytes]
gi|296227314|ref|XP_002759320.1| PREDICTED: mediator of RNA polymerase II transcription subunit 30
[Callithrix jacchus]
gi|332214162|ref|XP_003256197.1| PREDICTED: mediator of RNA polymerase II transcription subunit 30
[Nomascus leucogenys]
gi|397505672|ref|XP_003823376.1| PREDICTED: mediator of RNA polymerase II transcription subunit 30
[Pan paniscus]
gi|402879005|ref|XP_003903147.1| PREDICTED: mediator of RNA polymerase II transcription subunit 30
[Papio anubis]
gi|426360567|ref|XP_004047511.1| PREDICTED: mediator of RNA polymerase II transcription subunit 30
[Gorilla gorilla gorilla]
gi|74731968|sp|Q96HR3.1|MED30_HUMAN RecName: Full=Mediator of RNA polymerase II transcription subunit
30; AltName: Full=Mediator complex subunit 30; AltName:
Full=TRAP/Mediator complex component TRAP25; AltName:
Full=Thyroid hormone receptor-associated protein 6;
AltName: Full=Thyroid hormone receptor-associated
protein complex 25 kDa component; Short=Trap25
gi|14198326|gb|AAH08226.1| Mediator complex subunit 30 [Homo sapiens]
gi|19697922|gb|AAL89787.1| TRAP/Mediator complex component TRAP25 [Homo sapiens]
gi|119612376|gb|EAW91970.1| thyroid hormone receptor associated protein 6, isoform CRA_a [Homo
sapiens]
gi|123981230|gb|ABM82444.1| thyroid hormone receptor associated protein 6 [synthetic construct]
gi|123996065|gb|ABM85634.1| thyroid hormone receptor associated protein 6 [synthetic construct]
gi|208966730|dbj|BAG73379.1| mediator complex subunit 30 [synthetic construct]
gi|355698181|gb|EHH28729.1| Mediator complex subunit 30 [Macaca mulatta]
gi|355779911|gb|EHH64387.1| Mediator complex subunit 30 [Macaca fascicularis]
gi|380785297|gb|AFE64524.1| mediator of RNA polymerase II transcription subunit 30 [Macaca
mulatta]
gi|383422621|gb|AFH34524.1| mediator of RNA polymerase II transcription subunit 30 [Macaca
mulatta]
gi|410208202|gb|JAA01320.1| mediator complex subunit 30 [Pan troglodytes]
gi|410251858|gb|JAA13896.1| mediator complex subunit 30 [Pan troglodytes]
gi|410287662|gb|JAA22431.1| mediator complex subunit 30 [Pan troglodytes]
gi|410334353|gb|JAA36123.1| mediator complex subunit 30 [Pan troglodytes]
Length = 178
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|251733337|emb|CAQ76893.1| putative mediator of RNA polymerase II transcription subunit 30
short [Homo sapiens]
Length = 143
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KCNE C GM+ +E
Sbjct: 61 PNGVTYHTGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENC--GGMDPIPVE 112
>gi|333449413|gb|AEF33393.1| mediator complex subunit 30-like protein [Crassostrea ariakensis]
Length = 221
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECC 44
PNG + + D+RAK EQ++ + +LFK++RL Y+ NE C
Sbjct: 104 PNGINCSVQMATDRRAKVAEQIEHLTMLFKKIRLFYDNVNEMC 146
>gi|195169788|ref|XP_002025697.1| GL20845 [Drosophila persimilis]
gi|194109190|gb|EDW31233.1| GL20845 [Drosophila persimilis]
Length = 326
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 13 NDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
N+ K QE +TI+LLFKR+R+IY+KCN+ M+Y + E
Sbjct: 223 NNTEKKVQEYFRTIRLLFKRVRIIYDKCNDAV----MDYMNAE 261
>gi|198463385|ref|XP_001352804.2| GA14371 [Drosophila pseudoobscura pseudoobscura]
gi|158706141|sp|Q29DV9.2|MED30_DROPS RecName: Full=Mediator of RNA polymerase II transcription subunit
30; AltName: Full=Mediator complex subunit 30
gi|198151231|gb|EAL30304.2| GA14371 [Drosophila pseudoobscura pseudoobscura]
Length = 325
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 13 NDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
N+ K QE +TI+LLFKR+R+IY+KCN+ M+Y + E
Sbjct: 222 NNTEKKVQEYFRTIRLLFKRVRIIYDKCNDAV----MDYMNAE 260
>gi|76253839|ref|NP_001028926.1| uncharacterized protein LOC619273 [Danio rerio]
gi|66911934|gb|AAH97178.1| Zgc:114119 [Danio rerio]
Length = 189
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNE 42
PNG A D+ K QE L+ + LLF++LRL+YE+C E
Sbjct: 77 PNGVTQSQAAYQDRFGKLQEHLRQLTLLFRKLRLLYERCVE 117
>gi|405964520|gb|EKC29996.1| Mediator of RNA polymerase II transcription subunit 30 [Crassostrea
gigas]
Length = 196
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECC 44
PNG + + ++RAK EQ++ + +LFK++RL Y+ NE C
Sbjct: 115 PNGINCSVQMATERRAKVAEQIEHLTMLFKKIRLFYDNVNEMC 157
>gi|387915578|gb|AFK11398.1| Mediator of RNA polymerase II transcription subunit 30
[Callorhinchus milii]
Length = 184
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHI 54
PNG ++ K QE L+ + LLFK+LRL+Y++C E C V + T +
Sbjct: 72 PNGVTHNHVVYQERYNKLQEHLRQLTLLFKKLRLLYDRCGETCAVSDVPPTEL 124
>gi|395818025|ref|XP_003782439.1| PREDICTED: mediator of RNA polymerase II transcription subunit 30
[Otolemur garnettii]
Length = 178
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG D+ K Q+ L+ + +LF++LRL+Y+KC E C GM+ +E
Sbjct: 61 PNGVTYHSGTYQDRLTKLQDHLRQLSILFRKLRLVYDKCIENC--AGMDPIPVE 112
>gi|221220426|gb|ACM08874.1| Mediator of RNA polymerase II transcription subunit 30 [Salmo
salar]
Length = 189
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNE 42
PNG D+ K QE L+ + LLF++LRL+YE+C E
Sbjct: 77 PNGVTQSQAVYQDRFGKLQEHLRQLALLFRKLRLLYERCVE 117
>gi|432883035|ref|XP_004074201.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Oryzias latipes]
Length = 180
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNE 42
PNG D+ K QE L+ + LLF++LRL+YE+C E
Sbjct: 68 PNGVTQSHAMYQDRFGKLQEHLRQLALLFRKLRLLYERCVE 108
>gi|47222206|emb|CAG11085.1| unnamed protein product [Tetraodon nigroviridis]
Length = 168
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNE 42
PNG D+ K QE L+ + LLF++LRL+YE+C E
Sbjct: 53 PNGVTQSQAMYQDRFGKLQEHLRQLTLLFRKLRLLYERCVE 93
>gi|348519399|ref|XP_003447218.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Oreochromis niloticus]
Length = 194
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNE 42
PNG D+ K QE L+ + LLFK+LRL+YE+C E
Sbjct: 82 PNGVTQSQATYQDRFGKLQEHLRQLTLLFKKLRLLYERCVE 122
>gi|260781232|ref|XP_002585724.1| hypothetical protein BRAFLDRAFT_257672 [Branchiostoma floridae]
gi|229270759|gb|EEN41735.1| hypothetical protein BRAFLDRAFT_257672 [Branchiostoma floridae]
Length = 157
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 4/54 (7%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PNG N +++ K Q+ ++ +++LF++LRLIYEKC+E G+++++IE
Sbjct: 38 PNGVNP--NIHQERQTKLQDLVRQMEVLFRKLRLIYEKCHEST--AGLQHSNIE 87
>gi|225706984|gb|ACO09338.1| Thyroid hormone receptor-associated protein 6 [Osmerus mordax]
Length = 190
Score = 42.0 bits (97), Expect = 0.054, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNE 42
PNG A D+ K QE L+ + LLF++LRL+YE+C E
Sbjct: 78 PNGVNQSQAAYQDRFGKLQEHLRQLALLFRKLRLLYERCVE 118
>gi|391345653|ref|XP_003747099.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Metaseiulus occidentalis]
Length = 239
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 1 PPNGTVSVL--NASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
PP GT++ N +++AK E LK ++ LFKRLR +YE C++ G E++ +E
Sbjct: 95 PPTGTMNAQAQNLQEERKAKLNETLKALQGLFKRLRRVYEICDQ--NGSGGEFSSLE 149
>gi|427781059|gb|JAA55981.1| Putative mediator of rna polymerase ii transcription subunit
30-like protein [Rhipicephalus pulchellus]
Length = 257
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKC-NECCQVQGMEYTHIE 55
PP G + + ++R K QE L+ + LLF++L ++ C ++ V ++YT IE
Sbjct: 118 PPTGVATSMQGQEERRIKLQETLRNVGLLFRKLHRVHGICSDQSAAVASIQYTPIE 173
>gi|427795653|gb|JAA63278.1| Putative mediator of rna polymerase ii transcription subunit
30-like protein, partial [Rhipicephalus pulchellus]
Length = 246
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKC-NECCQVQGMEYTHIE 55
PP G + + ++R K QE L+ + LLF++L ++ C ++ V ++YT IE
Sbjct: 106 PPTGVATSMQGQEERRIKLQETLRNVGLLFRKLHRVHGICSDQSAAVASIQYTPIE 161
>gi|349804775|gb|AEQ17860.1| putative mediator of rna polymerase ii transcription subunit 30
[Hymenochirus curtipes]
Length = 131
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECC 44
PNG D+ K QE L+ + +L ++LRL+Y+KC E C
Sbjct: 22 PNGVTYHTTTYQDRLGKLQEHLRQLSILSRKLRLVYDKCIENC 64
>gi|410931010|ref|XP_003978889.1| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Takifugu rubripes]
Length = 189
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNE 42
PNG D+ K QE L+ + L F++LRL+YE+C E
Sbjct: 77 PNGVTQSQAMYQDRFGKLQEHLRQLSLFFRKLRLLYERCVE 117
>gi|390368476|ref|XP_795186.3| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Strongylocentrotus purpuratus]
Length = 177
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKC 40
PNG + + DK K Q+ K I++ FK+LRL+Y+KC
Sbjct: 49 PNGRSNTQQSHQDKITKLQDITKHIEVHFKKLRLLYDKC 87
>gi|115738169|ref|XP_790489.2| PREDICTED: mediator of RNA polymerase II transcription subunit
30-like [Strongylocentrotus purpuratus]
Length = 177
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 2 PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKC 40
PNG + + DK K Q+ K I++ FK+LRL+Y+KC
Sbjct: 49 PNGRSNTQQSHQDKITKLQDITKHIEVHFKKLRLLYDKC 87
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 827,202,344
Number of Sequences: 23463169
Number of extensions: 21136556
Number of successful extensions: 54552
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54451
Number of HSP's gapped (non-prelim): 95
length of query: 61
length of database: 8,064,228,071
effective HSP length: 33
effective length of query: 28
effective length of database: 7,289,943,494
effective search space: 204118417832
effective search space used: 204118417832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)