BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9076
         (61 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q172Y1|MED30_AEDAE Mediator of RNA polymerase II transcription subunit 30 OS=Aedes
           aegypti GN=MED30 PE=3 SV=1
          Length = 306

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/55 (70%), Positives = 49/55 (89%), Gaps = 1/55 (1%)

Query: 1   PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
           PPNGT + L++SNDK+AK QEQ +TI+LLFKRLRL+Y+KCN+ CQ QGMEYTH+E
Sbjct: 189 PPNGTNAGLSSSNDKKAKVQEQFRTIRLLFKRLRLLYDKCNDNCQ-QGMEYTHVE 242


>sp|Q6PC45|MED30_DANRE Mediator of RNA polymerase II transcription subunit 30 OS=Danio
          rerio GN=med30 PE=2 SV=1
          Length = 174

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 29/43 (67%)

Query: 2  PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECC 44
          PNG     N   D+  K QE L+T+ +LF++LRL+Y+KCNE C
Sbjct: 56 PNGVTYHPNTHQDRLGKLQEHLRTLSVLFRKLRLVYDKCNENC 98


>sp|Q2YDF2|MED30_BOVIN Mediator of RNA polymerase II transcription subunit 30 OS=Bos
           taurus GN=MED30 PE=2 SV=1
          Length = 193

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 2   PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
           PNG         D+ AK Q+ L+ + +LF++LRL+Y+KCNE C   GM+   +E
Sbjct: 61  PNGVTYHTGTYQDRLAKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112


>sp|Q9W0P3|MED30_DROME Mediator of RNA polymerase II transcription subunit 30
           OS=Drosophila melanogaster GN=MED30 PE=1 SV=1
          Length = 318

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 4/43 (9%)

Query: 13  NDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
           N    K QE  +TI+LLFKR+R+IYEKCN+     GM+Y   E
Sbjct: 215 NSSEKKVQEYFRTIRLLFKRVRIIYEKCNDA----GMDYMSAE 253


>sp|Q9CQI9|MED30_MOUSE Mediator of RNA polymerase II transcription subunit 30 OS=Mus
           musculus GN=Med30 PE=1 SV=1
          Length = 178

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 2   PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
           PNG         D+  K Q+ L+ + +LF++LRL+Y+KCNE C   GM+   +E
Sbjct: 61  PNGVTYHTGTYQDRLTKLQDHLRQLSILFRKLRLVYDKCNENC--GGMDPIPVE 112


>sp|Q0IHI6|MED30_XENLA Mediator of RNA polymerase II transcription subunit 30 OS=Xenopus
           laevis GN=med30 PE=2 SV=1
          Length = 184

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 2   PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
           PNG         D+  K QE L+ + +LF++LRL+Y+KCNE C   G++   IE
Sbjct: 65  PNGVTYHTVTYQDRLGKLQEHLRQLSILFRKLRLVYDKCNENC--AGLDPVPIE 116


>sp|Q96HR3|MED30_HUMAN Mediator of RNA polymerase II transcription subunit 30 OS=Homo
           sapiens GN=MED30 PE=1 SV=1
          Length = 178

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 2   PNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
           PNG         D+  K Q+ L+ + +LF++LRL+Y+KCNE C   GM+   +E
Sbjct: 61  PNGVTYHTGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENC--GGMDPIPVE 112


>sp|Q29DV9|MED30_DROPS Mediator of RNA polymerase II transcription subunit 30
           OS=Drosophila pseudoobscura pseudoobscura GN=MED30 PE=3
           SV=2
          Length = 325

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 4/43 (9%)

Query: 13  NDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
           N+   K QE  +TI+LLFKR+R+IY+KCN+      M+Y + E
Sbjct: 222 NNTEKKVQEYFRTIRLLFKRVRIIYDKCNDAV----MDYMNAE 260


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,284,860
Number of Sequences: 539616
Number of extensions: 534914
Number of successful extensions: 1466
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1456
Number of HSP's gapped (non-prelim): 10
length of query: 61
length of database: 191,569,459
effective HSP length: 34
effective length of query: 27
effective length of database: 173,222,515
effective search space: 4677007905
effective search space used: 4677007905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)