Query psy9076
Match_columns 61
No_of_seqs 23 out of 25
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 18:15:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11315 Med30: Mediator compl 99.9 3.5E-28 7.5E-33 165.6 5.7 58 1-60 32-89 (150)
2 smart00386 HAT HAT (Half-A-TPR 80.4 2.1 4.5E-05 19.5 2.1 16 30-45 3-18 (33)
3 PF10960 DUF2762: Protein of u 67.9 21 0.00046 21.7 4.8 30 13-42 38-67 (71)
4 PRK15361 pathogenicity island 67.7 9.4 0.0002 27.8 3.7 30 14-43 30-62 (195)
5 PF11934 DUF3452: Domain of un 66.9 14 0.00031 24.0 4.2 31 9-39 45-75 (136)
6 PF11616 EZH2_WD-Binding: WD r 65.3 16 0.00034 19.6 3.4 25 11-35 3-27 (30)
7 PF12323 HTH_OrfB_IS605: Helix 63.3 21 0.00045 18.9 4.0 26 20-45 13-38 (46)
8 PF07651 ANTH: ANTH domain; I 57.6 23 0.00051 24.4 4.1 34 17-50 225-258 (280)
9 PF09253 Ole-e-6: Pollen aller 46.9 11 0.00024 21.5 0.9 19 37-55 2-20 (41)
10 KOG4767|consensus 45.3 1.1 2.4E-05 33.2 -4.2 31 23-54 182-212 (231)
11 PF07526 POX: Associated with 44.0 20 0.00043 24.0 2.0 12 23-34 124-135 (140)
12 PF11221 Med21: Subunit 21 of 37.2 45 0.00097 21.8 2.9 32 14-45 3-34 (144)
13 PF14643 DUF4455: Domain of un 36.6 1.4E+02 0.0031 23.0 5.9 45 1-45 236-281 (473)
14 PRK15365 type III secretion sy 35.7 62 0.0013 21.7 3.3 27 2-28 61-87 (107)
15 PF04628 Sedlin_N: Sedlin, N-t 35.4 50 0.0011 21.0 2.8 20 24-43 89-108 (132)
16 PF13021 DUF3885: Domain of un 35.0 38 0.00082 18.6 1.9 13 31-43 17-29 (38)
17 KOG0774|consensus 33.4 71 0.0015 24.9 3.8 24 22-45 108-132 (334)
18 PF05802 EspB: Enterobacterial 31.9 1.3E+02 0.0029 23.4 5.0 34 12-45 39-72 (317)
19 KOG3480|consensus 31.2 99 0.0021 20.2 3.7 39 4-45 2-40 (90)
20 KOG1010|consensus 30.9 42 0.00091 29.4 2.4 35 6-40 130-164 (920)
21 PF15080 DUF4547: Domain of un 29.6 44 0.00095 24.4 2.0 21 30-50 97-117 (196)
22 PF02609 Exonuc_VII_S: Exonucl 29.1 1.1E+02 0.0023 16.9 5.0 31 13-43 2-42 (53)
23 PF07544 Med9: RNA polymerase 28.1 1.4E+02 0.0031 17.9 3.9 31 4-34 49-79 (83)
24 PF09164 VitD-bind_III: Vitami 27.9 64 0.0014 20.1 2.3 19 7-25 6-24 (68)
25 cd07157 2DBD_NR_DBD1 The first 26.3 47 0.001 20.3 1.5 21 37-61 62-82 (86)
26 cd01842 SGNH_hydrolase_like_5 25.9 51 0.0011 23.6 1.8 22 19-40 71-93 (183)
27 PF12432 DUF3677: Protein of u 25.8 94 0.002 18.9 2.8 35 6-42 45-81 (83)
28 PF08060 NOSIC: NOSIC (NUC001) 25.3 1.3E+02 0.0029 16.7 3.3 19 20-38 10-28 (53)
29 smart00574 POX domain associat 25.3 61 0.0013 22.4 2.0 18 11-28 74-91 (140)
30 KOG3470|consensus 25.1 1.5E+02 0.0032 19.8 3.7 28 18-45 55-82 (107)
31 PF10392 COG5: Golgi transport 24.9 1.6E+02 0.0035 18.8 3.9 34 8-41 66-100 (132)
32 COG0740 ClpP Protease subunit 24.6 1.7E+02 0.0036 21.0 4.2 34 1-40 124-157 (200)
33 PF02184 HAT: HAT (Half-A-TPR) 23.9 91 0.002 16.6 2.1 15 30-44 3-17 (32)
34 KOG0307|consensus 23.7 97 0.0021 27.6 3.3 28 8-35 963-990 (1049)
35 KOG1510|consensus 23.5 94 0.002 21.6 2.7 32 14-45 3-34 (139)
36 COG2900 SlyX Uncharacterized p 23.4 1.7E+02 0.0036 18.3 3.5 26 19-44 31-56 (72)
37 PF15497 SNAPc19: snRNA-activa 22.9 83 0.0018 20.0 2.2 19 15-35 12-30 (91)
38 PF12592 DUF3763: Protein of u 21.8 1.6E+02 0.0035 17.1 3.1 21 11-31 4-24 (57)
39 KOG4519|consensus 21.0 1.1E+02 0.0024 24.8 3.0 19 16-34 355-373 (459)
40 PF11423 Repressor_Mnt: Regula 20.3 82 0.0018 16.9 1.5 13 27-39 17-29 (30)
41 PF11026 DUF2721: Protein of u 20.1 2.2E+02 0.0047 18.3 3.7 16 23-38 49-64 (130)
No 1
>PF11315 Med30: Mediator complex subunit 30; InterPro: IPR021019 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med30 is a metazoan-specific subunit of Mediator [], having no homologues in yeasts.
Probab=99.95 E-value=3.5e-28 Score=165.64 Aligned_cols=58 Identities=59% Similarity=0.861 Sum_probs=56.6
Q ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccC
Q psy9076 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIEISKDS 60 (61)
Q Consensus 1 pPNG~~~~~~~~qdr~~Klqe~lr~l~~LFKrLRliYekCne~c~~~g~~y~~ie~l~~~ 60 (61)
||||++++++++|||++|+|||||+|++||||||+|||||||+|+ ||+|+|+|+|||.
T Consensus 32 lPng~t~~~~~aqdr~~kl~e~lr~i~~LFkkLRlIYekCne~~~--~l~~~~iEsLIP~ 89 (150)
T PF11315_consen 32 LPNGSTQQQNMAQDRRNKLQEQLRTIKVLFKKLRLIYEKCNENCQ--GLEPTPIESLIPY 89 (150)
T ss_pred CCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCCHHHhccc
Confidence 799999999999999999999999999999999999999999996 9999999999985
No 2
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.35 E-value=2.1 Score=19.48 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhh
Q psy9076 30 FKRLRLIYEKCNECCQ 45 (61)
Q Consensus 30 FKrLRliYekCne~c~ 45 (61)
+++.|.||+++...|+
T Consensus 3 ~~~~r~i~e~~l~~~~ 18 (33)
T smart00386 3 IERARKIYERALEKFP 18 (33)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 5788999999999986
No 3
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=67.85 E-value=21 Score=21.72 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9076 13 NDKRAKTQEQLKTIKLLFKRLRLIYEKCNE 42 (61)
Q Consensus 13 qdr~~Klqe~lr~l~~LFKrLRliYekCne 42 (61)
++|-.|+|+++..++--|+.+.-+++.-.+
T Consensus 38 ~~RE~kyq~~I~~lte~~~~~~~~~~dv~e 67 (71)
T PF10960_consen 38 EEREEKYQEQIEKLTEKLNVIEEIKEDVKE 67 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999886554
No 4
>PRK15361 pathogenicity island 2 effector protein SseD; Provisional
Probab=67.71 E-value=9.4 Score=27.78 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=22.8
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Q psy9076 14 DKRAKT---QEQLKTIKLLFKRLRLIYEKCNEC 43 (61)
Q Consensus 14 dr~~Kl---qe~lr~l~~LFKrLRliYekCne~ 43 (61)
|-.+-+ .|.+-+|-.||||||=+-.-=|.-
T Consensus 30 d~~s~l~~fddii~kL~eLfKKLRDvl~~Ynqk 62 (195)
T PRK15361 30 GTESMLLLFDDIWMKLMELAKKLRDIMRSYNVE 62 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 899999999999999886655443
No 5
>PF11934 DUF3452: Domain of unknown function (DUF3452); InterPro: IPR024599 This domain is found in proteins of the retinoblastoma protein family. It is found in association with Pfam:PF01858 and Pfam:PF01857. This domain is typically between 124 to 150 amino acids in length and has a single completely conserved residue W that may be functionally important.; PDB: 2QDJ_A 4ELJ_A.
Probab=66.93 E-value=14 Score=24.05 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=25.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9076 9 LNASNDKRAKTQEQLKTIKLLFKRLRLIYEK 39 (61)
Q Consensus 9 ~~~~qdr~~Klqe~lr~l~~LFKrLRliYek 39 (61)
....+++...+++.+-...++|||-+.||+.
T Consensus 45 ~~~~~~~~~~L~~~f~v~~~l~kky~~~f~~ 75 (136)
T PF11934_consen 45 SKRFRAQVKELERNFVVSTVLFKKYERIFQE 75 (136)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888999999999999999998864
No 6
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=65.26 E-value=16 Score=19.64 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9076 11 ASNDKRAKTQEQLKTIKLLFKRLRL 35 (61)
Q Consensus 11 ~~qdr~~Klqe~lr~l~~LFKrLRl 35 (61)
++..-+.|++|....|.-=+|+||+
T Consensus 3 lf~sNr~Ki~e~t~iLN~eWk~lRi 27 (30)
T PF11616_consen 3 LFSSNRQKIQERTDILNEEWKKLRI 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred hhHhhHHHHHHHHHHHHHHHHHhcc
Confidence 5666789999999999999999986
No 7
>PF12323 HTH_OrfB_IS605: Helix-turn-helix domain; InterPro: IPR021027 This entry represents an N-terminal helix-turn-helix domain found in a variety of putative transposases [, , ]. It is usually associated with PF01385 from PFAM and PF07282 from PFAM.
Probab=63.30 E-value=21 Score=18.92 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9076 20 QEQLKTIKLLFKRLRLIYEKCNECCQ 45 (61)
Q Consensus 20 qe~lr~l~~LFKrLRliYekCne~c~ 45 (61)
.+|-+.|...|.--|.|||.+.+.+.
T Consensus 13 ~~Q~~~L~~~~~~~R~vyN~~L~~~~ 38 (46)
T PF12323_consen 13 KEQEEKLERWFGACRFVYNWALAERK 38 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999998775
No 8
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=57.60 E-value=23 Score=24.38 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q psy9076 17 AKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGME 50 (61)
Q Consensus 17 ~Klqe~lr~l~~LFKrLRliYekCne~c~~~g~~ 50 (61)
.++.++.+.....|.+|+.+|+.|....-....+
T Consensus 225 ~~~~~i~~rf~~q~~~L~~Fy~~c~~~~~~~~~~ 258 (280)
T PF07651_consen 225 EKLLGIYKRFAKQTEELKEFYEWCKSLGYFRSLE 258 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCT--GGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence 5678889999999999999999999875433333
No 9
>PF09253 Ole-e-6: Pollen allergen ole e 6; InterPro: IPR015333 This entry represents pollen allergens, such as ole-e-6, a small acidic protein from Olea europaea (Common olive) which mediates olive allergy. Members of this family have an alpha-helical hairpin structure cross-linked by three disulphides, followed by a long, unstructured C-terminal tail [].; PDB: 1SS3_A.
Probab=46.94 E-value=11 Score=21.52 Aligned_cols=19 Identities=32% Similarity=0.831 Sum_probs=14.6
Q ss_pred HHHHHHhhhccCCcccccc
Q psy9076 37 YEKCNECCQVQGMEYTHIE 55 (61)
Q Consensus 37 YekCne~c~~~g~~y~~ie 55 (61)
|+.|.+-|.+.|--|+.+|
T Consensus 2 fn~C~keC~~~g~G~tfCE 20 (41)
T PF09253_consen 2 FNNCEKECKSEGNGYTFCE 20 (41)
T ss_dssp HHHHHHHHHTTT--HHHHH
T ss_pred cchHHHHHhccCCCeeeEE
Confidence 8899999998888887766
No 10
>KOG4767|consensus
Probab=45.31 E-value=1.1 Score=33.24 Aligned_cols=31 Identities=23% Similarity=0.586 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCccccc
Q psy9076 23 LKTIKLLFKRLRLIYEKCNECCQVQGMEYTHI 54 (61)
Q Consensus 23 lr~l~~LFKrLRliYekCne~c~~~g~~y~~i 54 (61)
|.+++.++.|.-+.|-.|.|.|+ .+-.++||
T Consensus 182 Lnq~s~~i~r~GvfYGqCSEiCG-anHsfmpI 212 (231)
T KOG4767|consen 182 LNQVSFSIQREGVFYGQCSEICG-ANHSFMPI 212 (231)
T ss_pred eeeeEEEeccCceEeehhhHhhC-CCcccCcE
Confidence 56777788899999999999996 55677776
No 11
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=43.97 E-value=20 Score=24.04 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q psy9076 23 LKTIKLLFKRLR 34 (61)
Q Consensus 23 lr~l~~LFKrLR 34 (61)
|++|+.+||.||
T Consensus 124 lqamSrhFR~LR 135 (140)
T PF07526_consen 124 LQAMSRHFRCLR 135 (140)
T ss_pred HHHHHHHHHHHH
Confidence 456666666665
No 12
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=37.20 E-value=45 Score=21.85 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9076 14 DKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQ 45 (61)
Q Consensus 14 dr~~Klqe~lr~l~~LFKrLRliYekCne~c~ 45 (61)
||++.|||.+.+|-..|--==-+-..+...++
T Consensus 3 DrlTQLQd~ldqL~~~f~~si~~l~~~a~~~~ 34 (144)
T PF11221_consen 3 DRLTQLQDCLDQLAEQFCNSIGYLQRDAPPSP 34 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Confidence 89999999999998777544444455555554
No 13
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=36.62 E-value=1.4e+02 Score=23.00 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=34.9
Q ss_pred CCCcchhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q psy9076 1 PPNGTVSVLNASNDKRAKTQEQLKT-IKLLFKRLRLIYEKCNECCQ 45 (61)
Q Consensus 1 pPNG~~~~~~~~qdr~~Klqe~lr~-l~~LFKrLRliYekCne~c~ 45 (61)
||+.+....+--.+.+..+++++-. ....+.+||.+|++=..-|.
T Consensus 236 Pp~~t~~~v~eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec~ 281 (473)
T PF14643_consen 236 PPNLTKEKVEEWYASLNALNEQIDEYHQQCMEKLRALYEKICQECL 281 (473)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888778888888888877754 45678999999987555553
No 14
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=35.65 E-value=62 Score=21.69 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=13.9
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHH
Q psy9076 2 PNGTVSVLNASNDKRAKTQEQLKTIKL 28 (61)
Q Consensus 2 PNG~~~~~~~~qdr~~Klqe~lr~l~~ 28 (61)
|+|+++-.+.++--.+++--++++|+.
T Consensus 61 P~G~~~~~qE~~k~m~~i~~~FKQLEt 87 (107)
T PRK15365 61 PQGVAGVNQEAEKDLKKIVSLFKQLEV 87 (107)
T ss_pred cchhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 788866555544444444433333333
No 15
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=35.35 E-value=50 Score=21.03 Aligned_cols=20 Identities=30% Similarity=0.394 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy9076 24 KTIKLLFKRLRLIYEKCNEC 43 (61)
Q Consensus 24 r~l~~LFKrLRliYekCne~ 43 (61)
..|+.+|++++.+|-++.-|
T Consensus 89 ~~ik~fF~~vh~~Y~~~~~N 108 (132)
T PF04628_consen 89 EDIKQFFKEVHELYVKALCN 108 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHccC
Confidence 46889999999999987655
No 16
>PF13021 DUF3885: Domain of unknown function (DUF3885)
Probab=35.04 E-value=38 Score=18.57 Aligned_cols=13 Identities=46% Similarity=0.858 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHh
Q psy9076 31 KRLRLIYEKCNEC 43 (61)
Q Consensus 31 KrLRliYekCne~ 43 (61)
.++|.+|+|+++-
T Consensus 17 ~~i~~ly~~y~~W 29 (38)
T PF13021_consen 17 ERIRPLYEKYNDW 29 (38)
T ss_pred HHHHHHHHHHHHH
Confidence 5688889988874
No 17
>KOG0774|consensus
Probab=33.39 E-value=71 Score=24.94 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhh
Q psy9076 22 QLKTIKLLFKRLRLIYEK-CNECCQ 45 (61)
Q Consensus 22 ~lr~l~~LFKrLRliYek-Cne~c~ 45 (61)
.|-+|+.++.-.-.-||+ |||+|.
T Consensus 108 kL~qiR~iy~~ElekyeqaCneftt 132 (334)
T KOG0774|consen 108 KLLQIRQIYHNELEKYEQACNEFTT 132 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777666666664 999995
No 18
>PF05802 EspB: Enterobacterial EspB protein
Probab=31.89 E-value=1.3e+02 Score=23.38 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9076 12 SNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQ 45 (61)
Q Consensus 12 ~qdr~~Klqe~lr~l~~LFKrLRliYekCne~c~ 45 (61)
.-|=+.-+.+.+=+|..||||||-++.--|.-=|
T Consensus 39 l~d~~adIs~lileL~eL~kKLRdiLq~YNQKQQ 72 (317)
T PF05802_consen 39 LTDGIADISDLILELAELFKKLRDILQDYNQKQQ 72 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999999999876665443
No 19
>KOG3480|consensus
Probab=31.18 E-value=99 Score=20.15 Aligned_cols=39 Identities=15% Similarity=0.351 Sum_probs=29.2
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9076 4 GTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQ 45 (61)
Q Consensus 4 G~~~~~~~~qdr~~Klqe~lr~l~~LFKrLRliYekCne~c~ 45 (61)
|..+.+.+.+++...-+-.+.++.-+|.||- +-|.+-|-
T Consensus 2 ~~~~~q~~~~~k~q~Ae~E~emm~d~fNrl~---~tC~~KCI 40 (90)
T KOG3480|consen 2 ALPQPQTVDQQKAQMAELEVEMMSDMFNRLT---NTCHKKCI 40 (90)
T ss_pred CCCcccccCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhC
Confidence 4555677788888877788999999998864 55665554
No 20
>KOG1010|consensus
Probab=30.88 E-value=42 Score=29.38 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=30.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9076 6 VSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKC 40 (61)
Q Consensus 6 ~~~~~~~qdr~~Klqe~lr~l~~LFKrLRliYekC 40 (61)
+.+.+.+++++..||.-+....+||||-+.|+..=
T Consensus 130 a~s~~~f~~~ieel~~~f~vssvl~KkY~~iF~~i 164 (920)
T KOG1010|consen 130 ANSPQEFREEIEELQRNFKVSSVLFKKYKRIFRDI 164 (920)
T ss_pred hcCHHHHHHHHHHHHhccceehhHHHHHHHHHHHH
Confidence 55677899999999999999999999999998753
No 21
>PF15080 DUF4547: Domain of unknown function (DUF4547)
Probab=29.57 E-value=44 Score=24.39 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhhccCCc
Q psy9076 30 FKRLRLIYEKCNECCQVQGME 50 (61)
Q Consensus 30 FKrLRliYekCne~c~~~g~~ 50 (61)
=||+|.+||-..|.|++|.-|
T Consensus 97 N~~Ir~vwesvLee~GLqE~d 117 (196)
T PF15080_consen 97 NKRIRVVWESVLEECGLQEGD 117 (196)
T ss_pred chHHHHHHHHHHHHcCCCccc
Confidence 468999999999999666544
No 22
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=29.08 E-value=1.1e+02 Score=16.87 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh
Q psy9076 13 NDKRAKTQEQLKTIK----------LLFKRLRLIYEKCNEC 43 (61)
Q Consensus 13 qdr~~Klqe~lr~l~----------~LFKrLRliYekCne~ 43 (61)
.+...+|++.++.|. .+|++=..++.+|++.
T Consensus 2 Ee~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~ 42 (53)
T PF02609_consen 2 EEAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQER 42 (53)
T ss_dssp HHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777776665 6899999999999875
No 23
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.15 E-value=1.4e+02 Score=17.95 Aligned_cols=31 Identities=10% Similarity=0.337 Sum_probs=24.7
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy9076 4 GTVSVLNASNDKRAKTQEQLKTIKLLFKRLR 34 (61)
Q Consensus 4 G~~~~~~~~qdr~~Klqe~lr~l~~LFKrLR 34 (61)
|+..+....++.+..+.++++.-+-+..+++
T Consensus 49 gi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 49 GIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777778888888888888888888776
No 24
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=27.88 E-value=64 Score=20.09 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=16.0
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q psy9076 7 SVLNASNDKRAKTQEQLKT 25 (61)
Q Consensus 7 ~~~~~~qdr~~Klqe~lr~ 25 (61)
++.+++.|=+.||.|+||+
T Consensus 6 Yse~tFtEyKKrL~e~l~~ 24 (68)
T PF09164_consen 6 YSENTFTEYKKRLAERLRA 24 (68)
T ss_dssp TTTS-HHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHH
Confidence 5788999999999999985
No 25
>cd07157 2DBD_NR_DBD1 The first DNA-binding domain (DBD) of the 2DBD nuclear receptors is composed of two C4-type zinc fingers. The first DNA-binding domain (DBD) of the 2DBD nuclear receptors(NRs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. NRs interact with specific DNA sites upstream of the target gene and modulate the rate of transcriptional initiation. Theses proteins contain two DBDs in tandem, probably resulted from an ancient recombination event. The 2DBD-NRs are found only in flatworm species, mollusks and arthropods. Their biological function is unknown.
Probab=26.32 E-value=47 Score=20.27 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=14.4
Q ss_pred HHHHHHhhhccCCccccccccccCC
Q psy9076 37 YEKCNECCQVQGMEYTHIEISKDSD 61 (61)
Q Consensus 37 YekCne~c~~~g~~y~~ie~l~~~~ 61 (61)
|.||.+. ||...++..=.++|
T Consensus 62 ~~KCl~v----GM~~~~~~~~~~~~ 82 (86)
T cd07157 62 YRKCLNV----GMSLGGPRYGRRSD 82 (86)
T ss_pred hhHHhHc----CCCccccccccccc
Confidence 5667765 99988877554444
No 26
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.87 E-value=51 Score=23.59 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHH
Q psy9076 19 TQEQLKTIKLLFKRLRLIY-EKC 40 (61)
Q Consensus 19 lqe~lr~l~~LFKrLRliY-ekC 40 (61)
+.+.-+.|+.||.|||-++ .+|
T Consensus 71 ~~~Y~~NL~~Lf~rLk~~lp~~a 93 (183)
T cd01842 71 MKTYRENLERLFSKLDSVLPIEC 93 (183)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcc
Confidence 6788899999999999887 554
No 27
>PF12432 DUF3677: Protein of unknown function (DUF3677) ; InterPro: IPR022145 This domain family is found in eukaryotes, and is approximately 80 amino acids in length.
Probab=25.81 E-value=94 Score=18.94 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=25.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q psy9076 6 VSVLNASNDKRAKTQEQLKTIKLLFKR--LRLIYEKCNE 42 (61)
Q Consensus 6 ~~~~~~~qdr~~Klqe~lr~l~~LFKr--LRliYekCne 42 (61)
.+.++..+|+. ++++|-.|+.-=|. ++-+|..|..
T Consensus 45 n~~~~~~~D~e--~i~~Llkl~lk~k~~~~~n~~~~~~k 81 (83)
T PF12432_consen 45 NCDSHSPEDSE--VIDNLLKLRLKSKAPKLINLFMACLK 81 (83)
T ss_pred cccCCchhhHH--HHHHHHHHhhccchHHHHHHHHHHHh
Confidence 34444555554 88888888877777 9999999864
No 28
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=25.29 E-value=1.3e+02 Score=16.69 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9076 20 QEQLKTIKLLFKRLRLIYE 38 (61)
Q Consensus 20 qe~lr~l~~LFKrLRliYe 38 (61)
.+.=+.|..+++++|..|.
T Consensus 10 ~~id~ei~~~~~~lre~Y~ 28 (53)
T PF08060_consen 10 DDIDKEINLLHMRLREWYS 28 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344678899999999994
No 29
>smart00574 POX domain associated with HOX domains.
Probab=25.28 E-value=61 Score=22.41 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHHHHHHH
Q psy9076 11 ASNDKRAKTQEQLKTIKL 28 (61)
Q Consensus 11 ~~qdr~~Klqe~lr~l~~ 28 (61)
-.|-|++||.-.|..+..
T Consensus 74 e~q~kk~kLl~mL~eVd~ 91 (140)
T smart00574 74 ELQRKKAKLLSMLEEVDR 91 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555544444433
No 30
>KOG3470|consensus
Probab=25.09 E-value=1.5e+02 Score=19.85 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9076 18 KTQEQLKTIKLLFKRLRLIYEKCNECCQ 45 (61)
Q Consensus 18 Klqe~lr~l~~LFKrLRliYekCne~c~ 45 (61)
=|+|+.+||--..+|||--|+-=-+.-.
T Consensus 55 Vl~et~~mlPD~~~RL~~a~~DLe~~l~ 82 (107)
T KOG3470|consen 55 VLKETRMMLPDSQRRLRKAYEDLESILA 82 (107)
T ss_pred HHHHHHHHChHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999987666654
No 31
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=24.86 E-value=1.6e+02 Score=18.76 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=24.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy9076 8 VLNASNDKRAKTQEQLKTIKLLFKRLR-LIYEKCN 41 (61)
Q Consensus 8 ~~~~~qdr~~Klqe~lr~l~~LFKrLR-liYekCn 41 (61)
+....++-...|+.++..|..=|+||| .|.+...
T Consensus 66 ~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~ 100 (132)
T PF10392_consen 66 SIEELESVLQAVRSSVESLQSSYERLRSEVIEPYE 100 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444556677888888999999999888 4544443
No 32
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=24.63 E-value=1.7e+02 Score=21.03 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=26.0
Q ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9076 1 PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKC 40 (61)
Q Consensus 1 pPNG~~~~~~~~qdr~~Klqe~lr~l~~LFKrLRliYekC 40 (61)
+|-|..+|+.. -+..|-+.|-..+++|--||.+-
T Consensus 124 qP~gg~~G~a~------Di~i~A~ei~~~~~~l~~i~a~~ 157 (200)
T COG0740 124 QPSGGAQGQAS------DIEIHAREILKIKERLNRIYAEH 157 (200)
T ss_pred cCCccCccCHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888776 46677777888888888888753
No 33
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=23.89 E-value=91 Score=16.58 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhh
Q psy9076 30 FKRLRLIYEKCNECC 44 (61)
Q Consensus 30 FKrLRliYekCne~c 44 (61)
|.|-|-||++....-
T Consensus 3 ~dRAR~IyeR~v~~h 17 (32)
T PF02184_consen 3 FDRARSIYERFVLVH 17 (32)
T ss_pred HHHHHHHHHHHHHhC
Confidence 578899999988754
No 34
>KOG0307|consensus
Probab=23.72 E-value=97 Score=27.60 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=22.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9076 8 VLNASNDKRAKTQEQLKTIKLLFKRLRL 35 (61)
Q Consensus 8 ~~~~~qdr~~Klqe~lr~l~~LFKrLRl 35 (61)
++.+.-..+.|+.|--|.|+.||-|||-
T Consensus 963 ~a~~~~~~krkl~d~~kRL~~L~~~L~~ 990 (1049)
T KOG0307|consen 963 SARTDPQTKRKLKDVTKRLEILFDKLRD 990 (1049)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555566788999999999999999983
No 35
>KOG1510|consensus
Probab=23.50 E-value=94 Score=21.62 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9076 14 DKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQ 45 (61)
Q Consensus 14 dr~~Klqe~lr~l~~LFKrLRliYekCne~c~ 45 (61)
||++.|||.+.++.-.|=--==+-.+|...|+
T Consensus 3 DRlTQLQd~vn~~A~qf~naig~Lq~~~pp~~ 34 (139)
T KOG1510|consen 3 DRLTQLQDTVNEMAEQFCNAIGVLQQTHPPVP 34 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 89999999999999888544444455555554
No 36
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.37 E-value=1.7e+02 Score=18.31 Aligned_cols=26 Identities=35% Similarity=0.316 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9076 19 TQEQLKTIKLLFKRLRLIYEKCNECC 44 (61)
Q Consensus 19 lqe~lr~l~~LFKrLRliYekCne~c 44 (61)
|-||=..|..+=.+||.+++|-.+.=
T Consensus 31 laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 31 LAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566778888889999999877653
No 37
>PF15497 SNAPc19: snRNA-activating protein complex subunit 19, SNAPc subunit 19
Probab=22.93 E-value=83 Score=19.95 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9076 15 KRAKTQEQLKTIKLLFKRLRL 35 (61)
Q Consensus 15 r~~Klqe~lr~l~~LFKrLRl 35 (61)
=+.|+|+||..|++ ..|.|
T Consensus 12 i~~~i~~qLN~LkV--EEL~L 30 (91)
T PF15497_consen 12 ILPKIQDQLNRLKV--EELHL 30 (91)
T ss_pred HHHHHHHHHHHHHH--HHHHH
Confidence 36789999998764 45444
No 38
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=21.81 E-value=1.6e+02 Score=17.09 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q psy9076 11 ASNDKRAKTQEQLKTIKLLFK 31 (61)
Q Consensus 11 ~~qdr~~Klqe~lr~l~~LFK 31 (61)
...+++.++..+||..+.+|-
T Consensus 4 e~~~qL~~~~~~l~~qR~~F~ 24 (57)
T PF12592_consen 4 EALAQLDEAEHELRQQRSLFH 24 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 346788888999999888885
No 39
>KOG4519|consensus
Probab=20.97 E-value=1.1e+02 Score=24.79 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9076 16 RAKTQEQLKTIKLLFKRLR 34 (61)
Q Consensus 16 ~~Klqe~lr~l~~LFKrLR 34 (61)
+..++|+++.|+++|+|+-
T Consensus 355 ~~E~r~a~~~IRr~~r~it 373 (459)
T KOG4519|consen 355 LLEAREAMLRIRRLMRQIT 373 (459)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888764
No 40
>PF11423 Repressor_Mnt: Regulatory protein Mnt; InterPro: IPR024421 Mnt is a repressor which is involved in the genetic switch between lysogenic and lytic growth in bacteriophage P22. The C-terminal domain of the protein consists of a dimer of two antiparallel coiled coils with a right handed twist, which is both stronger and has closer inter-helical separation compared with those found in left-handed coiled coils []. This entry is represented by Bacteriophage P22, Mnt. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 1QEY_C 1MNT_B.
Probab=20.29 E-value=82 Score=16.89 Aligned_cols=13 Identities=38% Similarity=0.825 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q psy9076 27 KLLFKRLRLIYEK 39 (61)
Q Consensus 27 ~~LFKrLRliYek 39 (61)
++.|..|.-+|.|
T Consensus 17 k~VfetLK~~Y~k 29 (30)
T PF11423_consen 17 KMVFETLKDMYSK 29 (30)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhc
Confidence 4689999999875
No 41
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=20.05 E-value=2.2e+02 Score=18.32 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9076 23 LKTIKLLFKRLRLIYE 38 (61)
Q Consensus 23 lr~l~~LFKrLRliYe 38 (61)
.++|..|.+|.|+|-.
T Consensus 49 ~~el~~L~rR~~li~~ 64 (130)
T PF11026_consen 49 RRELRILRRRARLIRR 64 (130)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778888888888754
Done!