Query psy9076
Match_columns 61
No_of_seqs 23 out of 25
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 18:15:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bl1_A Parathyroid hormone rec 59.4 2.6 8.9E-05 21.9 0.5 12 27-38 14-25 (31)
2 3pr6_A Trapp-associated protei 58.5 10 0.00035 25.4 3.5 26 18-43 102-127 (162)
3 2qdj_A Retinoblastoma-associat 57.4 17 0.00058 26.1 4.6 31 10-40 91-121 (304)
4 3dxr_B Mitochondrial import in 44.1 27 0.00092 21.2 3.5 36 7-45 12-47 (95)
5 1ss3_A Pollen allergen OLE E 6 43.8 9 0.00031 21.8 1.1 22 34-55 6-27 (50)
6 2yru_A Steroid receptor RNA ac 43.2 21 0.00071 22.4 2.9 20 15-34 34-53 (118)
7 2xus_A Breast cancer metastasi 41.1 16 0.00053 20.5 1.8 19 9-27 27-45 (49)
8 4dzo_A Mitotic spindle assembl 39.8 47 0.0016 20.8 4.2 26 14-39 4-29 (123)
9 3caz_A BAR protein; thermo-aci 39.1 36 0.0012 24.8 4.0 23 17-39 105-133 (294)
10 3fsi_A RT, reverse transcripta 39.0 52 0.0018 21.4 4.4 35 2-36 166-227 (255)
11 1ykh_B RNA polymerase II holoe 35.4 32 0.0011 21.7 2.9 17 14-30 3-19 (132)
12 3kqg_A Langerin, C-type lectin 33.5 79 0.0027 19.0 4.9 29 12-40 21-49 (182)
13 1qey_A MNT-C, protein (regulat 31.6 37 0.0013 17.6 2.2 24 14-39 5-29 (31)
14 1sfc_A VAMP 2, protein (synapt 31.4 41 0.0014 20.1 2.8 21 9-29 25-45 (96)
15 4i78_C Hemagglutinin HA2; infl 31.1 16 0.00054 25.4 1.0 27 19-45 108-149 (181)
16 1m46_B IQ4, IQ4 motif from MYO 31.0 37 0.0012 16.9 2.1 14 22-35 2-15 (26)
17 1dpj_B IA3, proteinase inhibit 29.6 50 0.0017 17.1 2.6 25 9-33 8-32 (33)
18 1rw3_A POL polyprotein; RNA an 28.6 86 0.003 22.1 4.5 34 2-35 170-230 (455)
19 3flo_B DNA polymerase alpha ca 28.2 49 0.0017 22.4 3.0 39 16-57 162-200 (206)
20 3ku3_B Hemagglutinin HA2 chain 27.4 20 0.00069 24.7 1.0 27 19-45 108-149 (174)
21 1mu2_A HIV-2 RT; HIV-2 reverse 25.3 1E+02 0.0035 22.6 4.4 17 19-35 195-211 (555)
22 1ytr_A Bacteriocin plantaricin 25.2 23 0.00078 17.6 0.7 11 22-32 13-23 (26)
23 2p22_C Protein SRN2; endosome, 24.7 1.2E+02 0.0042 20.2 4.5 36 10-45 86-125 (192)
24 3m5g_B Hemagglutinin; influenz 24.3 25 0.00085 24.4 1.0 27 19-45 108-149 (182)
25 4e6h_A MRNA 3'-END-processing 23.5 52 0.0018 25.2 2.7 18 28-45 323-340 (679)
26 2zd1_B P51 RT; P51/P66, hetero 23.4 1.2E+02 0.004 21.6 4.4 23 19-41 195-222 (428)
27 1l4a_A Synaptobrevin; snare, s 22.1 64 0.0022 18.4 2.4 21 9-29 10-30 (80)
28 3g21_A GAG polyprotein, capsid 22.0 63 0.0021 19.5 2.3 11 35-45 43-53 (77)
29 2keb_A DNA polymerase subunit 21.7 20 0.00067 22.8 0.0 32 17-50 29-60 (101)
30 2o1k_A NS28, non-structural gl 21.6 1.2E+02 0.0042 17.2 4.1 24 17-40 10-40 (52)
31 1dul_A Signal recognition part 21.6 78 0.0027 18.2 2.6 28 5-32 41-68 (69)
32 1yke_B RNA polymerase II holoe 21.2 40 0.0014 21.9 1.4 17 14-30 3-19 (151)
33 4fhr_A Flagellar motor switch 20.0 69 0.0024 20.6 2.4 19 20-38 6-24 (187)
No 1
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=59.43 E-value=2.6 Score=21.95 Aligned_cols=12 Identities=42% Similarity=0.872 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH
Q psy9076 27 KLLFKRLRLIYE 38 (61)
Q Consensus 27 ~~LFKrLRliYe 38 (61)
+.+|+||.+||-
T Consensus 14 ~e~FeRL~~iYT 25 (31)
T 1bl1_A 14 REVFDRLGMIYT 25 (31)
T ss_dssp HHHHHSSHHHHH
T ss_pred HHHHhheeeEEE
Confidence 468999999995
No 2
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=58.50 E-value=10 Score=25.37 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9076 18 KTQEQLKTIKLLFKRLRLIYEKCNEC 43 (61)
Q Consensus 18 Klqe~lr~l~~LFKrLRliYekCne~ 43 (61)
.+.|++..|+.+|++++.+|=||.-|
T Consensus 102 ~~~D~~~~Ik~~F~~vh~~Yvk~l~N 127 (162)
T 3pr6_A 102 GADDEFEAINQIFETVRKIYIRVKCN 127 (162)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcC
Confidence 35678889999999999999987654
No 3
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=57.39 E-value=17 Score=26.10 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=27.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9076 10 NASNDKRAKTQEQLKTIKLLFKRLRLIYEKC 40 (61)
Q Consensus 10 ~~~qdr~~Klqe~lr~l~~LFKrLRliYekC 40 (61)
...+.+...||..+-...+||||.+.||.+=
T Consensus 91 ~~~~~~i~~Le~~f~v~~~l~kky~~if~~i 121 (304)
T 2qdj_A 91 TKVDNAMSRLLKKYDVLFALFSKLERTCELI 121 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999873
No 4
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=44.15 E-value=27 Score=21.21 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=23.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9076 7 SVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQ 45 (61)
Q Consensus 7 ~~~~~~qdr~~Klqe~lr~l~~LFKrLRliYekCne~c~ 45 (61)
..+...++++....-+++....||-||- +.|-+-|-
T Consensus 12 ~~~~~~~qk~~~aE~q~~~~~~l~nklt---e~Cf~KCV 47 (95)
T 3dxr_B 12 QPQLSSQQKIQAAEAELDLVTDMFNKLV---NNCYKKCI 47 (95)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHH---HHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhC
Confidence 4556778888888888889988888875 44555553
No 5
>1ss3_A Pollen allergen OLE E 6; alpha-helix protein; NMR {Olea europaea} SCOP: g.2.3.1
Probab=43.85 E-value=9 Score=21.82 Aligned_cols=22 Identities=27% Similarity=0.670 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhccCCcccccc
Q psy9076 34 RLIYEKCNECCQVQGMEYTHIE 55 (61)
Q Consensus 34 RliYekCne~c~~~g~~y~~ie 55 (61)
+--|+.|.+-|.+.|--|+.+|
T Consensus 6 ~sCfn~C~keC~~~g~G~TfCE 27 (50)
T 1ss3_A 6 KECYDTCHKECSDKGNGFTFCE 27 (50)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHhccCCCeeeee
Confidence 3468999999998888888776
No 6
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=43.23 E-value=21 Score=22.38 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9076 15 KRAKTQEQLKTIKLLFKRLR 34 (61)
Q Consensus 15 r~~Klqe~lr~l~~LFKrLR 34 (61)
++.|+.|--|.|..||.+|+
T Consensus 34 ~k~~~~D~~KRL~~LfdkLn 53 (118)
T 2yru_A 34 KKQVCDDISRRLALLREQWA 53 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34556777777777777765
No 7
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=41.09 E-value=16 Score=20.50 Aligned_cols=19 Identities=5% Similarity=0.109 Sum_probs=15.6
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q psy9076 9 LNASNDKRAKTQEQLKTIK 27 (61)
Q Consensus 9 ~~~~qdr~~Klqe~lr~l~ 27 (61)
-..++||++.|+.+|.+|+
T Consensus 27 EqlY~ERl~ql~~~Leel~ 45 (49)
T 2xus_A 27 EKLFRERLSQLRLRLEEVG 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4578999999999888875
No 8
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=39.82 E-value=47 Score=20.83 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9076 14 DKRAKTQEQLKTIKLLFKRLRLIYEK 39 (61)
Q Consensus 14 dr~~Klqe~lr~l~~LFKrLRliYek 39 (61)
.-++.|++++...+.-..||+.||.+
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ 29 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQT 29 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999964
No 9
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=39.14 E-value=36 Score=24.78 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHH
Q psy9076 17 AKTQEQLKTIKLL------FKRLRLIYEK 39 (61)
Q Consensus 17 ~Klqe~lr~l~~L------FKrLRliYek 39 (61)
.|+|..+.+|+-| |-+.|||||-
T Consensus 105 ekiqkyfQ~IEtlK~ql~nf~e~RLiYDH 133 (294)
T 3caz_A 105 EKIQKYRQEIEEIKKEYKETDKYRERYDH 133 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4555555555544 7788999984
No 10
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=38.98 E-value=52 Score=21.39 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=23.5
Q ss_pred CCcchhhhhhhhHHHHHH---------------------------HHHHHHHHHHHHHHHHH
Q psy9076 2 PNGTVSVLNASNDKRAKT---------------------------QEQLKTIKLLFKRLRLI 36 (61)
Q Consensus 2 PNG~~~~~~~~qdr~~Kl---------------------------qe~lr~l~~LFKrLRli 36 (61)
|=|..++..++|.-..++ .||+++++.+|++||.-
T Consensus 166 PfGl~~sP~~fq~~m~~il~~~~~~~~~~~v~~Y~DDili~s~~~eeh~~~l~~v~~~L~~~ 227 (255)
T 3fsi_A 166 PQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNL 227 (255)
T ss_dssp CTTCTTHHHHHHHHHHHHTHHHHHHCTTCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhCcCcEEEEEcCCeEEEeCCHHHHHHHHHHHHHHHHHC
Confidence 567777777777655543 46677777777777643
No 11
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=35.44 E-value=32 Score=21.71 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9076 14 DKRAKTQEQLKTIKLLF 30 (61)
Q Consensus 14 dr~~Klqe~lr~l~~LF 30 (61)
||++-|||.+.+|-..|
T Consensus 3 DrlTQLQd~ldqla~~f 19 (132)
T 1ykh_B 3 DRMTQLQICLDQMTEQF 19 (132)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 89999999999987766
No 12
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=33.54 E-value=79 Score=18.95 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9076 12 SNDKRAKTQEQLKTIKLLFKRLRLIYEKC 40 (61)
Q Consensus 12 ~qdr~~Klqe~lr~l~~LFKrLRliYekC 40 (61)
-++++..||..|..+.-+++..+-+...|
T Consensus 21 l~~~~~~l~~~l~~~~~~l~~~~~~~~~C 49 (182)
T 3kqg_A 21 LNTKIRALQGSLENMSKLLKRQNDILQVV 49 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35566667777777777777666555555
No 13
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=31.64 E-value=37 Score=17.56 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=15.4
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy9076 14 DKRAKTQE-QLKTIKLLFKRLRLIYEK 39 (61)
Q Consensus 14 dr~~Klqe-~lr~l~~LFKrLRliYek 39 (61)
||.+-.|- .++ ++.|..|+-+|.|
T Consensus 5 ER~Ad~qse~vK--k~vfdtLk~~Y~k 29 (31)
T 1qey_A 5 ERLADEQSELVK--KMVFDTLKDLYKK 29 (31)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhcc
Confidence 45554442 222 5789999999986
No 14
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=31.43 E-value=41 Score=20.12 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q psy9076 9 LNASNDKRAKTQEQLKTIKLL 29 (61)
Q Consensus 9 ~~~~qdr~~Klqe~lr~l~~L 29 (61)
.+..+|++.+||.++..++..
T Consensus 25 ~~~~~d~l~~vq~eldeVk~I 45 (96)
T 1sfc_A 25 NLTSNRRLQQTQAQVDEVVDI 45 (96)
T ss_dssp CCCCSHHHHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHH
Confidence 345689999999999887544
No 15
>4i78_C Hemagglutinin HA2; influenza VRUS, hemagglutinin homologue, viral protein, ectodomain; HET: NAG FUC; 3.18A {Influenza a virus}
Probab=31.10 E-value=16 Score=25.40 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHhhh
Q psy9076 19 TQEQLKTIKLLFKRLRL---------------IYEKCNECCQ 45 (61)
Q Consensus 19 lqe~lr~l~~LFKrLRl---------------iYekCne~c~ 45 (61)
+..|=..+.-||.|+|. ||-||+..|-
T Consensus 108 ld~hDsnv~nL~ekvr~qLr~nA~e~GnGCFe~~HKCdn~Cm 149 (181)
T 4i78_C 108 LDFHDANVKNLFEKVKAQLKDNAIDEGNGCFLLLHKCNNSCM 149 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGEEECSSSEEEESSCCCHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcchhhhcCchhhhhhccCHHHH
Confidence 44455677889999885 6889999984
No 16
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=31.01 E-value=37 Score=16.86 Aligned_cols=14 Identities=43% Similarity=0.513 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q psy9076 22 QLKTIKLLFKRLRL 35 (61)
Q Consensus 22 ~lr~l~~LFKrLRl 35 (61)
-||+|+-|-||+|-
T Consensus 2 vlrtitnlqkkirk 15 (26)
T 1m46_B 2 VLRTITNLQKKIRK 15 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 37888888888874
No 17
>1dpj_B IA3, proteinase inhibitor IA3 peptide; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: a.137.7.1 PDB: 1g0v_B*
Probab=29.64 E-value=50 Score=17.12 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q psy9076 9 LNASNDKRAKTQEQLKTIKLLFKRL 33 (61)
Q Consensus 9 ~~~~qdr~~Klqe~lr~l~~LFKrL 33 (61)
+..+|.-+.|||---+-++--|||+
T Consensus 8 seifqsskeklqgdakvvsdafkkm 32 (33)
T 1dpj_B 8 SEIFQSSKEKLQGDAKVVSDAFKKM 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhHHHhccchHHHHHHHHhc
Confidence 3467888899999999999999885
No 18
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=28.64 E-value=86 Score=22.13 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=23.8
Q ss_pred CCcchhhhhhhhHHHHHH---------------------------HHHHHHHHHHHHHHHH
Q psy9076 2 PNGTVSVLNASNDKRAKT---------------------------QEQLKTIKLLFKRLRL 35 (61)
Q Consensus 2 PNG~~~~~~~~qdr~~Kl---------------------------qe~lr~l~~LFKrLRl 35 (61)
|=|..++..++|.-..++ .||.++++.+|++||-
T Consensus 170 pfGl~naP~~fq~~m~~~l~~~~~~~~~~~v~~YvDDili~s~~~~e~~~~l~~v~~~l~~ 230 (455)
T 1rw3_A 170 PQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGN 230 (455)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHHHHTCTTCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhhhCCCceEEEEcCCEEEecCCHHHHHHHHHHHHHHHHH
Confidence 567788888888766554 4566777777777764
No 19
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=28.20 E-value=49 Score=22.45 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccc
Q psy9076 16 RAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIEIS 57 (61)
Q Consensus 16 ~~Klqe~lr~l~~LFKrLRliYekCne~c~~~g~~y~~ie~l 57 (61)
+.++.....+.+..|++|+-+-+|-.+.| |-.++-+.+|
T Consensus 162 ~~~~~~l~~~nr~~~~~lk~vVdkyL~~~---gy~~V~L~~l 200 (206)
T 3flo_B 162 ESSIKALTEQNRELMETGRSVVQKYLNDC---GRRYVDMTSI 200 (206)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHTTC-------------
T ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHHHc---CCcEEeHHHH
Confidence 34455555555688999999999999999 6666666554
No 20
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B* 3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B* 2fk0_B* 3fku_B* 4fqi_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B* 3r2x_B* ...
Probab=27.37 E-value=20 Score=24.74 Aligned_cols=27 Identities=26% Similarity=0.675 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHhhh
Q psy9076 19 TQEQLKTIKLLFKRLRL---------------IYEKCNECCQ 45 (61)
Q Consensus 19 lqe~lr~l~~LFKrLRl---------------iYekCne~c~ 45 (61)
+..|=..+.-||.|+|. +|-||.+.|-
T Consensus 108 lD~hDsnv~nLyekvr~qLr~NA~e~GnGCFE~yHKCD~~Cm 149 (174)
T 3ku3_B 108 LDFHDSNVKNLYDKVRMQLRDNVKELGNGCFEFYHKCDDECM 149 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGEEECSSSEEEESSCCCHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcchhhhcCchhhhhhcccHHHH
Confidence 44555677889999886 6889999884
No 21
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=25.27 E-value=1e+02 Score=22.58 Aligned_cols=17 Identities=18% Similarity=0.020 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9076 19 TQEQLKTIKLLFKRLRL 35 (61)
Q Consensus 19 lqe~lr~l~~LFKrLRl 35 (61)
..||+++|+.+|++||-
T Consensus 195 ~~eh~~~l~~v~~~l~~ 211 (555)
T 1mu2_A 195 DLEHDRVVLQLKELLNG 211 (555)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46677777777777664
No 22
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=25.20 E-value=23 Score=17.63 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=8.5
Q ss_pred HHHHHHHHHHH
Q psy9076 22 QLKTIKLLFKR 32 (61)
Q Consensus 22 ~lr~l~~LFKr 32 (61)
.+++++.||||
T Consensus 13 aikqvkklfkk 23 (26)
T 1ytr_A 13 AIKQVKKLFKK 23 (26)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 46788888886
No 23
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=24.65 E-value=1.2e+02 Score=20.21 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=28.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhh
Q psy9076 10 NASNDKRAKTQEQLKTIKLLFKRLRLIY----EKCNECCQ 45 (61)
Q Consensus 10 ~~~qdr~~Klqe~lr~l~~LFKrLRliY----ekCne~c~ 45 (61)
....+.+.++++++..++.|+...+.-| +...+++.
T Consensus 86 ~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~s 125 (192)
T 2p22_C 86 EDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYG 125 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4456788999999999999999998888 55555543
No 24
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST cell membrane, HOST membrane, membrane, transmembrane, viral protein; HET: NAG; 2.60A {Influenza a virus} PDB: 3m5h_B* 3m5i_B* 3m5j_B* 4dj6_B* 4dj7_B* 4dj8_B* 4fqv_B 1ti8_B*
Probab=24.27 E-value=25 Score=24.43 Aligned_cols=27 Identities=22% Similarity=0.598 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHhhh
Q psy9076 19 TQEQLKTIKLLFKRLRL---------------IYEKCNECCQ 45 (61)
Q Consensus 19 lqe~lr~l~~LFKrLRl---------------iYekCne~c~ 45 (61)
+..|=..+.-||.|+|. +|-||+..|-
T Consensus 108 lD~hDsnv~nLyekvr~~L~~NA~e~GnGCFE~yHKCdn~Cm 149 (182)
T 3m5g_B 108 IDLADSEMSKLYERVKKQLRENAEEDGTGCFEIFHKCDDQCM 149 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSEEECSSSEEEESSCCCHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcchhhhcCchhhhhhcccHHHH
Confidence 44555677889999885 6889999884
No 25
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=23.49 E-value=52 Score=25.19 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy9076 28 LLFKRLRLIYEKCNECCQ 45 (61)
Q Consensus 28 ~LFKrLRliYekCne~c~ 45 (61)
.+.+|+|.+|++|...|+
T Consensus 323 ~~~~Rv~~~Ye~aL~~~p 340 (679)
T 4e6h_A 323 LHKARMTYVYMQAAQHVC 340 (679)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHcC
Confidence 468899999999999986
No 26
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=23.43 E-value=1.2e+02 Score=21.65 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHH
Q psy9076 19 TQEQLKTIKLLFKRLRLI-----YEKCN 41 (61)
Q Consensus 19 lqe~lr~l~~LFKrLRli-----YekCn 41 (61)
..||++.++.+|++||-. -+||.
T Consensus 195 ~~eh~~~l~~v~~~l~~~gL~l~~~Kc~ 222 (428)
T 2zd1_B 195 IGQHRTKIEELRQHLLRWGLTTPDKKHQ 222 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHhCCccChhHcc
Confidence 478888888888888764 35665
No 27
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=22.05 E-value=64 Score=18.42 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q psy9076 9 LNASNDKRAKTQEQLKTIKLL 29 (61)
Q Consensus 9 ~~~~qdr~~Klqe~lr~l~~L 29 (61)
....+|++.+||.++..++..
T Consensus 10 ~~~~~d~l~~vq~el~ev~~i 30 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDI 30 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHH
Confidence 346789999999999887544
No 28
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=21.99 E-value=63 Score=19.45 Aligned_cols=11 Identities=18% Similarity=0.042 Sum_probs=10.1
Q ss_pred HHHHHHHHhhh
Q psy9076 35 LIYEKCNECCQ 45 (61)
Q Consensus 35 liYekCne~c~ 45 (61)
|+++++|.-|.
T Consensus 43 Ll~QNANpdCk 53 (77)
T 3g21_A 43 CFRQKSQPDIQ 53 (77)
T ss_dssp HHHHHSCHHHH
T ss_pred HHHHhcCHHHH
Confidence 78899999998
No 29
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.70 E-value=20 Score=22.80 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q psy9076 17 AKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGME 50 (61)
Q Consensus 17 ~Klqe~lr~l~~LFKrLRliYekCne~c~~~g~~ 50 (61)
..+.++|..+.+=+.- -|.+||.|-|-.-+.+
T Consensus 29 e~L~eEfdefGi~~~d--~VldKc~ELC~~y~ld 60 (101)
T 2keb_A 29 QQLAEELQIFGLDCEE--ALIEKLVELCVQYGQN 60 (101)
T ss_dssp HHHHHHHHHHTCBCCH--HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCC
Confidence 4455666666655555 4789999999865553
No 30
>2o1k_A NS28, non-structural glycoprotein NSP4; rotavirus enterotoxin, nonstructural protein, tetramer coiled-coil, virulence, viral protein; 1.67A {Simian rotavirus A} PDB: 2o1j_A 1g1j_A* 1g1i_A* 3miw_B
Probab=21.61 E-value=1.2e+02 Score=17.16 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHH
Q psy9076 17 AKTQEQLKTIKLLFKR-------LRLIYEKC 40 (61)
Q Consensus 17 ~Klqe~lr~l~~LFKr-------LRliYekC 40 (61)
..+.+|+++|.-|-+| |..||++=
T Consensus 10 kemrrQl~mIdkLTtREiEQVeLL~rIyd~L 40 (52)
T 2o1k_A 10 KEMRRQLEMIDKLTTREIEQVELLKRIYDKL 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777665 56788764
No 31
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=21.59 E-value=78 Score=18.22 Aligned_cols=28 Identities=7% Similarity=0.125 Sum_probs=21.9
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy9076 5 TVSVLNASNDKRAKTQEQLKTIKLLFKR 32 (61)
Q Consensus 5 ~~~~~~~~qdr~~Klqe~lr~l~~LFKr 32 (61)
+|.|+.+...-.++|=.++++.+-++|+
T Consensus 41 IA~GSG~~v~eVn~Llkqf~~m~kmmk~ 68 (69)
T 1dul_A 41 IAAGSGMQVQDVNRLLKQFDDMQRMMKK 68 (69)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777788888888888888876
No 32
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.15 E-value=40 Score=21.89 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9076 14 DKRAKTQEQLKTIKLLF 30 (61)
Q Consensus 14 dr~~Klqe~lr~l~~LF 30 (61)
||++-|||.+.+|-..|
T Consensus 3 DrLTQLQd~ldqLa~~f 19 (151)
T 1yke_B 3 DRLTQLQICLDQMTEQF 19 (151)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHH
Confidence 89999999999987766
No 33
>4fhr_A Flagellar motor switch protein FLIM; motor protein; 1.93A {Thermotoga maritima} PDB: 3soh_A 2hp7_A
Probab=20.04 E-value=69 Score=20.60 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9076 20 QEQLKTIKLLFKRLRLIYE 38 (61)
Q Consensus 20 qe~lr~l~~LFKrLRliYe 38 (61)
.||+++|+++|.|.-....
T Consensus 6 ke~l~~Le~I~e~faR~~~ 24 (187)
T 4fhr_A 6 KEQLRTFQMIHENFGRALS 24 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4899999999998755443
Done!