Query psy9076
Match_columns 61
No_of_seqs 23 out of 25
Neff 3.1
Searched_HMMs 13730
Date Fri Aug 16 18:15:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9076.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9076hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2onda1 a.118.8.7 (A:242-549) 43.8 9.5 0.00069 22.9 3.0 18 28-45 30-47 (308)
2 d1hara_ e.8.1.2 (A:) HIV-1 rev 42.9 8.5 0.00062 24.3 2.8 17 19-35 195-211 (216)
3 d1ykhb1 a.252.1.1 (B:2-130) RN 38.7 12 0.00089 22.2 2.9 17 14-30 2-18 (129)
4 d1ztwa1 e.8.1.2 (A:24-278) MML 36.4 23 0.0017 22.1 4.1 19 2-20 166-184 (255)
5 d1chma1 c.55.2.1 (A:2-156) Cre 29.7 20 0.0015 19.9 2.7 24 2-25 9-36 (155)
6 d1dmta_ d.92.1.4 (A:) Neutral 29.3 27 0.002 23.1 3.7 33 12-44 53-93 (696)
7 d1q08a_ a.6.1.3 (A:) Transcrip 22.7 56 0.0041 17.5 4.3 33 9-41 41-73 (94)
8 d1lj9a_ a.4.5.28 (A:) Transcri 21.8 37 0.0027 18.8 2.8 25 21-45 2-26 (144)
9 d1kf6a3 d.168.1.1 (A:226-357) 20.3 35 0.0025 19.6 2.5 18 27-44 97-114 (132)
10 d1prtc2 d.169.1.2 (C:4-89) Per 20.1 18 0.0013 20.9 1.1 12 16-27 35-46 (86)
No 1
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=43.80 E-value=9.5 Score=22.95 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy9076 28 LLFKRLRLIYEKCNECCQ 45 (61)
Q Consensus 28 ~LFKrLRliYekCne~c~ 45 (61)
..++|.+.||++|...++
T Consensus 30 ~~~~Rv~~vyerAl~~~~ 47 (308)
T d2onda1 30 LITKRVMFAYEQCLLVLG 47 (308)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHCC
Confidence 568899999999999886
No 2
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=42.94 E-value=8.5 Score=24.29 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9076 19 TQEQLKTIKLLFKRLRL 35 (61)
Q Consensus 19 lqe~lr~l~~LFKrLRl 35 (61)
+.||+.+|+.+|++||.
T Consensus 195 ~eeH~~~l~~vl~~L~~ 211 (216)
T d1hara_ 195 IGAHRTKIEELRQHLLR 211 (216)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888888888874
No 3
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.75 E-value=12 Score=22.18 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9076 14 DKRAKTQEQLKTIKLLF 30 (61)
Q Consensus 14 dr~~Klqe~lr~l~~LF 30 (61)
||++-||+.+.+|--.|
T Consensus 2 DrLTQLQd~lnqla~~f 18 (129)
T d1ykhb1 2 DRMTQLQICLDQMTEQF 18 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 89999999999987776
No 4
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=36.38 E-value=23 Score=22.09 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=14.4
Q ss_pred CCcchhhhhhhhHHHHHHH
Q psy9076 2 PNGTVSVLNASNDKRAKTQ 20 (61)
Q Consensus 2 PNG~~~~~~~~qdr~~Klq 20 (61)
|-|..++...+|....++-
T Consensus 166 PfGl~~spa~fq~~~~~il 184 (255)
T d1ztwa1 166 PQGFKNSPTLFDEALHRDL 184 (255)
T ss_dssp CTTCTTHHHHHHHHHHHHT
T ss_pred ehhcccchhhhHHHHHHHH
Confidence 6788888888887776643
No 5
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]}
Probab=29.71 E-value=20 Score=19.90 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=16.7
Q ss_pred CCcc----hhhhhhhhHHHHHHHHHHHH
Q psy9076 2 PNGT----VSVLNASNDKRAKTQEQLKT 25 (61)
Q Consensus 2 PNG~----~~~~~~~qdr~~Klqe~lr~ 25 (61)
|||- +-+..-++.|+.|+++.++.
T Consensus 9 ~~~~k~~~~fs~~E~~~Rl~klr~~m~~ 36 (155)
T d1chma1 9 RNGDKVRSTFSAQEYANRQARLRAHLAA 36 (155)
T ss_dssp CCSCCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 6773 22345678899999988864
No 6
>d1dmta_ d.92.1.4 (A:) Neutral endopeptidase (neprilysin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.31 E-value=27 Score=23.12 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhh
Q psy9076 12 SNDKRAKTQEQLKTIK--------LLFKRLRLIYEKCNECC 44 (61)
Q Consensus 12 ~qdr~~Klqe~lr~l~--------~LFKrLRliYekCne~c 44 (61)
+.+...+++..++.+- -.+++++.+|+.|.+.-
T Consensus 53 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~k~~~~y~sC~~~~ 93 (696)
T d1dmta_ 53 FDILRDELEVVLKDVLQEPKTEDIVAVQKAKALYRSCINES 93 (696)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTCCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhChH
Confidence 3445556666666642 45899999999996543
No 7
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=22.67 E-value=56 Score=17.49 Aligned_cols=33 Identities=6% Similarity=0.289 Sum_probs=27.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9076 9 LNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCN 41 (61)
Q Consensus 9 ~~~~qdr~~Klqe~lr~l~~LFKrLRliYekCn 41 (61)
.....+|+..+.++++.|..+=+.|.-+=+.|.
T Consensus 41 ~~l~~~kl~~i~~kI~~L~~l~~~L~~l~~~c~ 73 (94)
T d1q08a_ 41 KGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456788999999999999988888887777773
No 8
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=21.79 E-value=37 Score=18.75 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9076 21 EQLKTIKLLFKRLRLIYEKCNECCQ 45 (61)
Q Consensus 21 e~lr~l~~LFKrLRliYekCne~c~ 45 (61)
|.+|.|.++++.++-+|+.=....+
T Consensus 2 dl~r~i~~i~R~~~~~~~~~~~~~~ 26 (144)
T d1lj9a_ 2 DILREIGMIARALDSISNIEFKELS 26 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTGGGT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5689999999999999988555543
No 9
>d1kf6a3 d.168.1.1 (A:226-357) Fumarate reductase {Escherichia coli [TaxId: 562]}
Probab=20.33 E-value=35 Score=19.64 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy9076 27 KLLFKRLRLIYEKCNECC 44 (61)
Q Consensus 27 ~~LFKrLRliYekCne~c 44 (61)
+.+.+|+--||++|.+..
T Consensus 97 ~~l~~rfp~i~~~~~~~~ 114 (132)
T d1kf6a3 97 KKLHERLPFICELAKAYV 114 (132)
T ss_dssp HHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 456778889999999976
No 10
>d1prtc2 d.169.1.2 (C:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=20.09 E-value=18 Score=20.88 Aligned_cols=12 Identities=33% Similarity=0.398 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHH
Q psy9076 16 RAKTQEQLKTIK 27 (61)
Q Consensus 16 ~~Klqe~lr~l~ 27 (61)
-+.||+.||+|+
T Consensus 35 s~elq~ylr~it 46 (86)
T d1prtc2 35 NAELQTYLRQIT 46 (86)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHhcC
Confidence 357999999985
Done!