RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9076
         (61 letters)



>gnl|CDD|221075 pfam11315, Med30, Mediator complex subunit 30.  Med30 is a
          metazoan-specific subunit of Mediator, having no
          homologues in yeasts.
          Length = 150

 Score = 64.1 bits (156), Expect = 4e-15
 Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 1  PPNGTVSVLNASNDKRAKTQEQLKTIKLLFKRLRLIYEKCNECCQVQGMEYTHIE 55
           PNGT S  + + DK  K QEQL+T+KLLF++LRL+YEKCN  C   G++ T IE
Sbjct: 32 LPNGTTSHQSIAQDKCGKIQEQLRTLKLLFRKLRLVYEKCNRNC--AGLDPTPIE 84


>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
          Length = 330

 Score = 25.2 bits (56), Expect = 1.9
 Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 5   TVSVLNASNDK-RAKTQEQLKTIKLLFK 31
           T+++   + ++ R K +E+L+    LFK
Sbjct: 221 TLTLFGENTEEGREKFREELEETHQLFK 248


>gnl|CDD|234932 PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional.
          Length = 482

 Score = 25.2 bits (56), Expect = 2.3
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 26 IKLLFKRLRLIYEKCNECCQVQGMEYTHIEISKDSD 61
          IK+L   +R + +K +E   V    +  IE+    +
Sbjct: 23 IKILTGNIRNVLKKLDETAAVVR-HWDRIEVRAKDE 57


>gnl|CDD|181087 PRK07701, flgL, flagellar hook-associated protein FlgL;
          Validated.
          Length = 298

 Score = 23.8 bits (52), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 9  LNASNDKRAKTQEQLKTIK 27
          +N++ +K  K QEQL T K
Sbjct: 16 INSNLEKLDKYQEQLSTGK 34


>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
          family).  Protein phosphatase 2A (PP2A) is a major
          intracellular protein phosphatase that regulates
          multiple aspects of cell growth and metabolism. The
          ability of this widely distributed heterotrimeric
          enzyme to act on a diverse array of substrates is
          largely controlled by the nature of its regulatory B
          subunit. There are multiple families of B subunits (See
          also pfam01240), this family is called the B56 family.
          Length = 405

 Score = 23.4 bits (51), Expect = 8.8
 Identities = 4/16 (25%), Positives = 8/16 (50%)

Query: 31 KRLRLIYEKCNECCQV 46
          +   L  +K  +CC +
Sbjct: 8  EFKDLFLKKLKQCCVI 23


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.315    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,692,662
Number of extensions: 170604
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 9
Length of query: 61
Length of database: 10,937,602
Length adjustment: 32
Effective length of query: 29
Effective length of database: 9,518,274
Effective search space: 276029946
Effective search space used: 276029946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)