RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9076
         (61 letters)



>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta
           sandwich, transferase; 2.30A {Escherichia coli} SCOP:
           b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
          Length = 617

 Score = 25.2 bits (56), Expect = 1.3
 Identities = 4/11 (36%), Positives = 8/11 (72%)

Query: 46  VQGMEYTHIEI 56
            + M +TH+E+
Sbjct: 165 AKWMGFTHLEL 175


>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis
           H37RV, mesophilic human pathogen, RV1326C gene, glycosyl
           transferase; 2.33A {Mycobacterium tuberculosis}
          Length = 722

 Score = 25.3 bits (56), Expect = 1.4
 Identities = 3/11 (27%), Positives = 7/11 (63%)

Query: 46  VQGMEYTHIEI 56
           +    +TH+E+
Sbjct: 273 IVDQGFTHVEL 283


>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
           single-stranded DNA, isomerase/DNA complex; HET: DNA;
           2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
           2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
          Length = 659

 Score = 24.9 bits (55), Expect = 1.7
 Identities = 5/43 (11%), Positives = 8/43 (18%), Gaps = 17/43 (39%)

Query: 16  RAKTQEQLKTIKLLFKRL-----------------RLIYEKCN 41
           R    +QL  IK                         + +   
Sbjct: 78  RPSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQ 120


>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein,
           oxidoreductase, thiamine diphosphate, thiamine
           pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A
           {Escherichia coli} PDB: 2jgd_B*
          Length = 933

 Score = 24.9 bits (55), Expect = 2.0
 Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 6/30 (20%)

Query: 25  TIKLLFKRLRLIYEKCNECCQVQGMEYTHI 54
            +  L + L+  Y      C   G EY HI
Sbjct: 152 KLGELLEALKQTY------CGPIGAEYMHI 175


>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A
          {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A*
          2yid_A*
          Length = 868

 Score = 24.4 bits (54), Expect = 2.3
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 6/30 (20%)

Query: 25 TIKLLFKRLRLIYEKCNECCQVQGMEYTHI 54
           ++ +   LR  Y      C+  G+EYTHI
Sbjct: 72 KLRDILSVLRDAY------CRHVGVEYTHI 95


>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
           {Mycobacterium smegmatis}
          Length = 1113

 Score = 24.5 bits (54), Expect = 2.8
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 6/30 (20%)

Query: 25  TIKLLFKRLRLIYEKCNECCQVQGMEYTHI 54
            ++ +   LR  Y      C+  G+EYTHI
Sbjct: 317 KLRDILSVLRDAY------CRHVGVEYTHI 340


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 24.1 bits (51), Expect = 2.9
 Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 2/18 (11%)

Query: 21 EQLKTIKLLFKRLRLIYE 38
          E+ + +K L   L+L Y 
Sbjct: 18 EK-QALKKLQASLKL-YA 33


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0767    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 802,212
Number of extensions: 30447
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 8
Length of query: 61
Length of database: 6,701,793
Length adjustment: 32
Effective length of query: 29
Effective length of database: 5,808,321
Effective search space: 168441309
Effective search space used: 168441309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)