RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9084
(103 letters)
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box
transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Length = 193
Score = 61.0 bits (147), Expect = 4e-13
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 50/141 (35%)
Query: 13 ISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRY---------------------- 50
RRMFP F+VR LD A+Y+L+MD + DD RY++
Sbjct: 30 SGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIH 89
Query: 51 ---------------AFHR-----------QIGSLVSLPRFHVVLLSPESNSAS--ATSP 82
FH+ L S+ ++ +N S
Sbjct: 90 PDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILKLPYST 149
Query: 83 FKTFLFPETMFTAVTAYQNHR 103
F+T+LFPET F AVTAYQN +
Sbjct: 150 FRTYLFPETEFIAVTAYQNDK 170
>2x6u_A T-box transcription factor TBX5; developmental protein,
DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear
protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB:
2x6v_A*
Length = 203
Score = 58.2 bits (140), Expect = 5e-12
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 52/142 (36%)
Query: 14 SRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRY----------------------- 50
RRMFP+++V++ L+P +Y+L+MD VP DD RY++
Sbjct: 32 GRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAEPAMPGRLYVHP 91
Query: 51 --------------AFHR-----------QIGSLVSLPRFHVVLLSPESNSASATSPFK- 84
+F + L S+ ++ L +++ +
Sbjct: 92 DSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNGFGSKNT 151
Query: 85 ---TFLFPETMFTAVTAYQNHR 103
T +FPET F AVT+YQNH+
Sbjct: 152 AFCTHVFPETAFIAVTSYQNHK 173
>1xbr_A Protein (T protein); complex (transcription factor/DNA),
transcription factor, DNA-binding protein,
transcription/DNA complex; HET: DNA; 2.50A {Xenopus
laevis} SCOP: b.2.5.4
Length = 184
Score = 57.4 bits (138), Expect = 8e-12
Identities = 34/135 (25%), Positives = 48/135 (35%), Gaps = 45/135 (33%)
Query: 14 SRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRY----------AFHRQIGSLVSLP 63
RRMFP +V + LDP+A Y +++DFV D+ R++Y + + P
Sbjct: 28 GRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHP 87
Query: 64 R--------------FHVVLLSPESNSA---------------------SATSPFKTFLF 88
F V L+ + N + F
Sbjct: 88 DSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNSLHKYEPRIHIVRVGGTQRMITSHSF 147
Query: 89 PETMFTAVTAYQNHR 103
PET F AVTAYQN
Sbjct: 148 PETQFIAVTAYQNEE 162
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins;
HET: DNA; 2.58A {Homo sapiens}
Length = 203
Score = 51.8 bits (123), Expect = 1e-09
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 13 ISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQ 55
RRMFPTFQV+LF +DP A+YML+MDFVPVDDKRYRYAFH
Sbjct: 41 AGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSS 83
Score = 40.2 bits (93), Expect = 2e-05
Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 63 PRFHVV-LLSPESNSASATSPFKTFLFPETMFTAVTAYQNHR 103
PRFHVV + + + A FKTF+F ET FTAVTAYQNHR
Sbjct: 145 PRFHVVYVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHR 186
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 27.1 bits (61), Expect = 1.1
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 12 WISRRMFPTFQVRLFNLDPDAEYMLMMD 39
+ RR +++F LD +A+ ML
Sbjct: 249 LMKRRQLDARDIKVFVLD-EADNMLDQQ 275
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar
donar complex rossmann fold, GT-B fold,
glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A
{Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Length = 816
Score = 25.7 bits (56), Expect = 4.0
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 21 FQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQIG 57
F+ L + + + L +DF P + R H+ IG
Sbjct: 120 FKEELVDGVKNGNFTLELDFEPFNASIPRPTLHKYIG 156
>2icr_A RED fluorescent protein ZOANRFP; ZRFP574, chromophore structure,
Cys-Phe LINK; HET: XYG; 1.51A {Zoanthus SP} PDB: 2fl1_A*
2ojk_A* 2pxs_A* 2pxw_A* 1xa9_A* 2ogr_A* 1xae_A*
Length = 237
Score = 24.9 bits (54), Expect = 5.3
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 15/65 (23%)
Query: 19 PTFQVRLFNLDPDAEYMLMMDFVPV------------DDKRYRYAFH---RQIGSLVSLP 63
P + N +P E ++ ++ + D RYR F + +P
Sbjct: 142 PVMKKMTTNWEPSCEKIIPINSQKILKGDVSMYLLLKDGGRYRCQFDTIYKAKTEPKEMP 201
Query: 64 RFHVV 68
+H +
Sbjct: 202 DWHFI 206
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial
iron aquisition, heme bindin; HET: HEM; 2.41A
{Campylobacter jejuni}
Length = 251
Score = 24.7 bits (53), Expect = 6.9
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 4 DEALCGWPWISRRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQIGSLVSLP 63
DE+ + +R+ ++V L+ + + D + I ++ +
Sbjct: 154 DESKAASVILRKRL--RYRVNASFLERGERFDQIYDEF-----EKQTGGEGGIKTIRKML 206
Query: 64 RFHVVLLSPES 74
FH+V L +
Sbjct: 207 DFHLVKLEFKK 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.138 0.447
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,638,055
Number of extensions: 85930
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 24
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.0 bits)