RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9084
         (103 letters)



>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 184

 Score = 82.6 bits (204), Expect = 6e-22
 Identities = 31/134 (23%), Positives = 46/134 (34%), Gaps = 45/134 (33%)

Query: 15  RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQI----GSLVSLPRFHVVLL 70
           RRMFP  +V +  LDP+A Y +++DFV  D+ R++Y     +        +    ++   
Sbjct: 29  RRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHPD 88

Query: 71  SPESNSA-----------------------------------------SATSPFKTFLFP 89
           SP   +                                                 +  FP
Sbjct: 89  SPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNSLHKYEPRIHIVRVGGTQRMITSHSFP 148

Query: 90  ETMFTAVTAYQNHR 103
           ET F AVTAYQN  
Sbjct: 149 ETQFIAVTAYQNEE 162


>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 184

 Score = 75.7 bits (186), Expect = 3e-19
 Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 50/139 (35%)

Query: 15  RRMFPTFQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQI----GSLVSLPRFHVVLL 70
           RRMFP F+VR   LD  A+Y+L+MD +  DD RY++   R +           R ++   
Sbjct: 29  RRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 88

Query: 71  SPES-----------------------------NSASATSP-----------------FK 84
           SP +                             NS     P                 F+
Sbjct: 89  SPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILKLPYSTFR 148

Query: 85  TFLFPETMFTAVTAYQNHR 103
           T+LFPET F AVTAYQN +
Sbjct: 149 TYLFPETEFIAVTAYQNDK 167


>d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein,
           N-terminal domain {Black sea rod (Plexaura homomalla)
           [TaxId: 47982]}
          Length = 366

 Score = 23.0 bits (49), Expect = 8.8
 Identities = 6/54 (11%), Positives = 16/54 (29%)

Query: 21  FQVRLFNLDPDAEYMLMMDFVPVDDKRYRYAFHRQIGSLVSLPRFHVVLLSPES 74
           F ++  + D D    ++M+    +      +    +           V  +P  
Sbjct: 117 FSIKFADSDSDGPLDIVMNTGEANIFWNSPSLEDFVPVEEGDAAEEYVYKNPYY 170


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 405,691
Number of extensions: 16675
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 11
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.2 bits)