Query psy9085
Match_columns 394
No_of_seqs 408 out of 1310
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 18:28:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_V 26S proteasome regulato 100.0 7.7E-54 2.6E-58 421.3 14.1 242 89-333 5-255 (306)
2 2o95_A 26S proteasome non-ATPa 100.0 2.2E-31 7.6E-36 243.5 19.6 171 103-297 5-179 (187)
3 4e0q_A COP9 signalosome comple 100.0 1.4E-28 4.9E-33 216.8 9.8 129 105-241 5-138 (141)
4 2znr_A AMSH-like protease; met 99.9 5.9E-28 2E-32 220.5 8.6 134 102-248 5-140 (178)
5 3rzv_A STAM-binding protein; u 99.9 6.3E-26 2.2E-30 212.0 11.4 131 104-247 40-172 (211)
6 4b4t_U RPN8, 26S proteasome re 99.9 6.7E-24 2.3E-28 211.0 23.5 200 105-330 5-208 (338)
7 2kcq_A MOV34/MPN/PAD-1 family; 99.9 4.1E-23 1.4E-27 183.2 11.9 122 108-243 1-127 (153)
8 2kks_A Uncharacterized protein 99.9 1.9E-22 6.6E-27 177.6 15.5 138 108-267 2-139 (146)
9 1oi0_A AF2198, hypothetical pr 99.8 2.5E-18 8.4E-23 147.4 9.6 109 107-241 3-111 (124)
10 3izc_k 60S ribosomal protein R 99.2 1.5E-13 5.1E-18 113.2 -3.6 44 1-56 1-44 (100)
11 3iz5_k 60S ribosomal protein L 99.2 4.3E-13 1.5E-17 112.4 -1.3 44 1-56 4-47 (112)
12 2og4_A PRE-mRNA-splicing facto 99.1 8.1E-11 2.8E-15 112.1 7.2 127 106-247 38-170 (254)
13 2p8r_A PRP8, PRE-mRNA-splicing 99.0 5.4E-10 1.8E-14 107.5 8.4 125 106-247 39-173 (273)
14 4a18_Q RPL36, 60S ribosomal pr 99.0 3.5E-11 1.2E-15 99.7 -0.9 40 4-55 2-44 (104)
15 3sbg_A PRE-mRNA-splicing facto 98.2 2E-06 6.9E-11 88.6 8.6 128 107-247 350-481 (565)
16 2qlc_A DNA repair protein RADC 86.3 4.2 0.00014 34.4 9.3 91 111-213 7-98 (126)
17 2rh2_A Dihydrofolate reductase 20.1 38 0.0013 24.5 1.2 11 184-194 24-34 (62)
No 1
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-54 Score=421.27 Aligned_cols=242 Identities=33% Similarity=0.560 Sum_probs=181.7
Q ss_pred HHHHHhcCCCCCCC---CCeeEEEECHHHHHHHHHHHhcCCCceEEEEEeeEE-cCCeEEEEEEEecCccCCCCcccccc
Q psy9085 89 QQDMIAAKPWEKDP---HFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKI-DANSMIVMDAFALPVEGTETRVNAQA 164 (394)
Q Consensus 89 ~~~~~~~~pw~~dp---~~~~~V~Is~~aLlkIl~Hars~~p~EVmGlLLG~~-d~~tl~Vtd~F~lP~~~te~rv~a~~ 164 (394)
|+-+...++|..|| +++++|+|+++||+||++||+++.|.||||+|+|.. ++++++|+||||+|++++++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d 84 (306)
T 4b4t_V 5 QRLMMNSKVGSADTGRDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVD 84 (306)
T ss_dssp ------------CCCCCSSCCEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCC
T ss_pred HHhhhccCCCCCCCCCCCCCCEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCC
Confidence 34456677777766 579999999999999999999999999999999984 66789999999999999999988654
Q ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCCCCCceEEEEEEEccC
Q psy9085 165 QAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPK 244 (394)
Q Consensus 165 ea~ey~~~mle~~~kvgr~e~iVGWYHSHP~~~~~pS~iDV~tQ~~yQ~~~~p~VaLVvDp~~t~~~Gkv~i~AFR~~p~ 244 (394)
.+|+.+|+++++++|+++++||||||||+++||||++||+||..||.+.+++|+|||||.++. +|++.|+|||++|.
T Consensus 85 --~~y~~~m~~~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~-~G~~~i~Afr~~~~ 161 (306)
T 4b4t_V 85 --DVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSV-KGKVVIDAFRLIDT 161 (306)
T ss_dssp --HHHHHHHHHHHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSS-SCSSCEEEEECCHH
T ss_pred --HHHHHHHHHHHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCC-CCceeeeEEEecCc
Confidence 468999999999999999999999999999999999999999999999999999999999986 79999999999997
Q ss_pred CCCCCCCCC----Ccccccccchhcccccc-ceeEEeeeeEEecCHHHHHHHHhhhhhhhhhhhccccccccHHHHHHHH
Q psy9085 245 GYKPANEEP----SEYQTIPLNKIEDFGVH-CKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQM 319 (394)
Q Consensus 245 ~~~~~~~~~----~e~~~iPl~ki~d~g~~-~~~yy~L~V~~~~S~ld~~~L~~L~~~~w~~~Ls~s~l~~n~~~~~~~i 319 (394)
++.+..++| +.++.+|..++++++.+ +++||+|+|+|++|++|+.+|+.||++||..+|+.+++..+.++..+++
T Consensus 162 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~~~~~~i 241 (306)
T 4b4t_V 162 GALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAAT 241 (306)
T ss_dssp HHHHCCCCCSCC----------------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHHHHHHHH
T ss_pred cccccccCcccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Confidence 765544433 34556777788888765 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy9085 320 CDLSDKLEQAESAL 333 (394)
Q Consensus 320 ~dl~~k~~~~~~~~ 333 (394)
.++.+..++..+.+
T Consensus 242 ~~m~~~~~~y~k~v 255 (306)
T 4b4t_V 242 KSMVKIAEQYSKRI 255 (306)
T ss_dssp HHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 98877776665554
No 2
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.98 E-value=2.2e-31 Score=243.45 Aligned_cols=171 Identities=18% Similarity=0.270 Sum_probs=143.0
Q ss_pred CCeeEEEECHHHHHHHHHHHhc----CCCceEEEEEeeEEcCCeEEEEEEEecCccCCCCcccccccHHHHHHHHHHHHH
Q psy9085 103 HFFKDIKISALALLKMVMHARS----GGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAK 178 (394)
Q Consensus 103 ~~~~~V~Is~~aLlkIl~Hars----~~p~EVmGlLLG~~d~~tl~Vtd~F~lP~~~te~rv~a~~ea~ey~~~mle~~~ 178 (394)
.++++|+|+++|+++|++||.+ +.+.||||+|||..++++++|+||||+|+.+++.+.+....+.+|+.+|+++++
T Consensus 5 ~~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~~ 84 (187)
T 2o95_A 5 LAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFK 84 (187)
T ss_dssp CSCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHHH
T ss_pred CCCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHHH
Confidence 4568999999999999999854 489999999999999999999999999998776643333335679999999999
Q ss_pred HhCCCCceEEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCCCCCceEEEEEEEccCCCCCCCCCCCcccc
Q psy9085 179 EVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQT 258 (394)
Q Consensus 179 kvgr~e~iVGWYHSHP~~~~~pS~iDV~tQ~~yQ~~~~p~VaLVvDp~~t~~~Gkv~i~AFR~~p~~~~~~~~~~~e~~~ 258 (394)
++++++++||||||||++ |..|+..|..||.+.+++|+||+||.++. +.+.++||++.+..+.+..
T Consensus 85 ~v~~~~~iVGWY~s~~~~----s~~d~~i~~~~~~~~~~~v~Livd~~~~~--~~l~i~ay~~~~~~~~~~~-------- 150 (187)
T 2o95_A 85 KVNARERIVGWYHTGPKL----HKNDIAINELMKRYCPNSVLVIIDVKPKD--LGLPTEAYISVEEVHDDGT-------- 150 (187)
T ss_dssp TTSSSCEEEEEEECCSSC----CTTHHHHHHHHTTTCTTCEEEEECCCTTC---CCSEEEEEEEEECC------------
T ss_pred HhCCCCCEEEEEcCCCcC----CcccHHHHHHHHhcCCCCEEEEECCCCCC--CCcCeEEEEEechhcCCCC--------
Confidence 999999999999999986 66788888889998899999999998752 4499999999986543210
Q ss_pred cccchhccccccceeEEeeeeEEecCHHHHHHHHhhhhh
Q psy9085 259 IPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNK 297 (394)
Q Consensus 259 iPl~ki~d~g~~~~~yy~L~V~~~~S~ld~~~L~~L~~~ 297 (394)
.....|.++|+++..++.|+..++.|.+.
T Consensus 151 ----------~~~~~F~~ip~~I~~~eaE~i~v~~l~~~ 179 (187)
T 2o95_A 151 ----------PTSKTFEHVTSEIGAEEAEEVGVEHLLRD 179 (187)
T ss_dssp ----------CCEEEEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred ----------cccCEEEEeeEEEecCcHHHHHHHHHHhc
Confidence 12467999999999999999999988653
No 3
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.95 E-value=1.4e-28 Score=216.81 Aligned_cols=129 Identities=19% Similarity=0.299 Sum_probs=107.3
Q ss_pred eeEEEECHHHHHHHHHHHhc-----CCCceEEEEEeeEEcCCeEEEEEEEecCccCCCCcccccccHHHHHHHHHHHHHH
Q psy9085 105 FKDIKISALALLKMVMHARS-----GGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKE 179 (394)
Q Consensus 105 ~~~V~Is~~aLlkIl~Hars-----~~p~EVmGlLLG~~d~~tl~Vtd~F~lP~~~te~rv~a~~ea~ey~~~mle~~~k 179 (394)
..+|+|+|+||++|++||.+ +.+.+|+|+|||..++++++|+|||++|++++++++.. +.+|+.+|++++++
T Consensus 5 ~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~~~---d~~y~~~m~~~~k~ 81 (141)
T 4e0q_A 5 SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVI---NKDYYNKKEQQYKQ 81 (141)
T ss_dssp CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEEEE---CHHHHHHHHHHHHH
T ss_pred cEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCceee---cHHHHHHHHHHHHH
Confidence 46899999999999999954 35889999999999999999999999999887776532 56899999999999
Q ss_pred hCCCCceEEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCCCCCceEEEEEEE
Q psy9085 180 VGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRT 241 (394)
Q Consensus 180 vgr~e~iVGWYHSHP~~~~~pS~iDV~tQ~~yQ~~~~p~VaLVvDp~~t~~~Gkv~i~AFR~ 241 (394)
+++++++||||||||+ ++..|+..|..|++..+.+|+|++||..+. .|++.++||+.
T Consensus 82 v~~~e~iVGWY~s~~~----~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~-~g~Lp~~ay~s 138 (141)
T 4e0q_A 82 VFSDLDFIGWYTTGDN----PTADDIKIQRQIAAINECPIMLQLNPLSRS-VDHLPLKLFES 138 (141)
T ss_dssp HSTTCEEEEEEEEEC-----------CHHHHHHHTTCCCEEEEESCSCCC-CTTHHHHHHCC
T ss_pred hCCCccEEEEEeCCCC----CCcchHHHHHHHHHHCCCCEEEEECCCccC-CCeEEEEEEEE
Confidence 9999999999999994 677788888888988888999999998864 67888888864
No 4
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.94 E-value=5.9e-28 Score=220.49 Aligned_cols=134 Identities=20% Similarity=0.258 Sum_probs=113.7
Q ss_pred CCCeeEEEECHHHHHHHHHHHhcCC--CceEEEEEeeEEcCCeEEEEEEEecCccCCCCcccccccHHHHHHHHHHHHHH
Q psy9085 102 PHFFKDIKISALALLKMVMHARSGG--TLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKE 179 (394)
Q Consensus 102 p~~~~~V~Is~~aLlkIl~Hars~~--p~EVmGlLLG~~d~~tl~Vtd~F~lP~~~te~rv~a~~ea~ey~~~mle~~~k 179 (394)
-..++.|.|+..++.+|+.||+... +.||||+|+|..+++..+|+++|++|+.++++++++.++... ++.++
T Consensus 5 ~~~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~e~-----~~~~~- 78 (178)
T 2znr_A 5 MEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEEL-----FNVQD- 78 (178)
T ss_dssp CCSCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHHHH-----HHHHH-
T ss_pred cCCcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHHHH-----HHHHH-
Confidence 3468899999999999999998764 479999999999888999999999999988888765433221 22233
Q ss_pred hCCCCceEEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCCCCCceEEEEEEEccCCCCC
Q psy9085 180 VGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKP 248 (394)
Q Consensus 180 vgr~e~iVGWYHSHP~~~~~pS~iDV~tQ~~yQ~~~~p~VaLVvDp~~t~~~Gkv~i~AFR~~p~~~~~ 248 (394)
++++++||||||||+++||||.+|+++|..||.+.+++++||+||..+ .++|||++|.++..
T Consensus 79 -~~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~------~~~afrl~~~g~~~ 140 (178)
T 2znr_A 79 -QHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK------DTGIFRLTNAGMLE 140 (178)
T ss_dssp -HHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT------EEEEEEECHHHHHH
T ss_pred -hCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC------cceEEEEECCcEee
Confidence 367999999999999999999999999999999999999999999763 28999999977654
No 5
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.93 E-value=6.3e-26 Score=212.04 Aligned_cols=131 Identities=19% Similarity=0.275 Sum_probs=112.6
Q ss_pred CeeEEEECHHHHHHHHHHHhcC--CCceEEEEEeeEEcCCeEEEEEEEecCccCCCCcccccccHHHHHHHHHHHHHHhC
Q psy9085 104 FFKDIKISALALLKMVMHARSG--GTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVG 181 (394)
Q Consensus 104 ~~~~V~Is~~aLlkIl~Hars~--~p~EVmGlLLG~~d~~tl~Vtd~F~lP~~~te~rv~a~~ea~ey~~~mle~~~kvg 181 (394)
-++.|.|+..++.+|+.||+.. .+.||||+|+|+..+++++|+++|..|+.++++++++.++.. +.+++ ..
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e--~~~~~---~~-- 112 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEE--LFLIQ---DQ-- 112 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHHH--HHHHH---HH--
T ss_pred ccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChHH--HHHHH---hh--
Confidence 4689999999999999999986 458999999999988999999999999999888887654332 11222 22
Q ss_pred CCCceEEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCCCCCceEEEEEEEccCCCC
Q psy9085 182 RLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYK 247 (394)
Q Consensus 182 r~e~iVGWYHSHP~~~~~pS~iDV~tQ~~yQ~~~~p~VaLVvDp~~t~~~Gkv~i~AFR~~p~~~~ 247 (394)
+++++||||||||+++||||.+|+.+|..||.+.+++|+|||||..+ +++|||++|+|+.
T Consensus 113 ~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~------~lgaFrLtp~G~~ 172 (211)
T 3rzv_A 113 QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ------ETGFFKLTDHGLE 172 (211)
T ss_dssp HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT------EEEEEEECHHHHH
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC------eeeEEEeccchhh
Confidence 57999999999999999999999999999999999999999999742 6999999998764
No 6
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.7e-24 Score=211.00 Aligned_cols=200 Identities=19% Similarity=0.293 Sum_probs=151.1
Q ss_pred eeEEEECHHHHHHHHHHHh---cCCCceEEEEEeeEEcCCeEEEEEEEecCccCCCCcccccccHHHHHHHHHHHHHHhC
Q psy9085 105 FKDIKISALALLKMVMHAR---SGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVG 181 (394)
Q Consensus 105 ~~~V~Is~~aLlkIl~Har---s~~p~EVmGlLLG~~d~~tl~Vtd~F~lP~~~te~rv~a~~ea~ey~~~mle~~~kvg 181 (394)
.++|.|+|+||++|++|+. .+.+.+|+|+|||..++++++|+|||++|++.+++.......+.+|+..|++++++++
T Consensus 5 ~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~ 84 (338)
T 4b4t_U 5 HEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKIN 84 (338)
T ss_dssp CSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHC
T ss_pred CCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcC
Confidence 4689999999999999983 4567799999999999999999999999998777665544456789999999999999
Q ss_pred CCCceEEEEecCCCCCCcccHhhHHhHHhhhccCC-CeEEEEEcCCCCCCCCceEEEEEEEccCCCCCCCCCCCcccccc
Q psy9085 182 RLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQE-PFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIP 260 (394)
Q Consensus 182 r~e~iVGWYHSHP~~~~~pS~iDV~tQ~~yQ~~~~-p~VaLVvDp~~t~~~Gkv~i~AFR~~p~~~~~~~~~~~e~~~iP 260 (394)
+++.+||||||+|. ++..|+..|..|+.+.+ ..++|++|+..+ .+.+.++||+..+......
T Consensus 85 ~~e~iVGWY~tg~~----~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~--~~~lpi~aY~s~~~~~~~~----------- 147 (338)
T 4b4t_U 85 AKEKLIGWYHSGPK----LRASDLKINELFKKYTQNNPLLLIVDVKQQ--GVGLPTDAYVAIEQVKDDG----------- 147 (338)
T ss_dssp CSCEEEEEEECCSS----CCSTHHHHHHHHGGGCCSCCCEEEECSCCC--SSSCSEEEEEEEEECSSCS-----------
T ss_pred ccCCEEEEEecCCC----CCccHHHHHHHHHhccCCCcEEEEecCCCC--CCCcceEEEEeehhccCCC-----------
Confidence 99999999999985 45567777777887764 558888998753 6889999999877432110
Q ss_pred cchhccccccceeEEeeeeEEecCHHHHHHHHhhhhhhhhhhhccccccccHHHHHHHHHHHHHHHHHHH
Q psy9085 261 LNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAE 330 (394)
Q Consensus 261 l~ki~d~g~~~~~yy~L~V~~~~S~ld~~~L~~L~~~~w~~~Ls~s~l~~n~~~~~~~i~dl~~k~~~~~ 330 (394)
......|.++|+++..++.|+..++.|.+... .-+...+..+.......+..|..+|+...
T Consensus 148 -------~~~~~~F~~lp~~i~~~eaE~Igv~~l~r~~~--~~~~~~l~~~l~~~~~al~~L~~~l~~i~ 208 (338)
T 4b4t_U 148 -------TSTEKTFLHLPCTIEAEEAEEIGVEHLLRDVR--DQAAGGLSIRLTNQLKSLKGLQSKLKDVV 208 (338)
T ss_dssp -------TTCEEEEEEECEEECSCHHHHHHHHHHHHHHS--SCC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------cccccEEEEeeeEeecCcHHHHHHHHHHhccc--cCcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 01145799999999999999999999876532 11222333344444455555655555544
No 7
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=99.89 E-value=4.1e-23 Score=183.25 Aligned_cols=122 Identities=22% Similarity=0.247 Sum_probs=97.0
Q ss_pred EEECHHHHHHHHHHHhcCCCceEEEEEeeEEc-CCeEEEEEEEecCcc--CC-CCcccccccHHHHHHHHHHHHHHhCCC
Q psy9085 108 IKISALALLKMVMHARSGGTLEVMGLLLGKID-ANSMIVMDAFALPVE--GT-ETRVNAQAQAYEYMTAYIEAAKEVGRL 183 (394)
Q Consensus 108 V~Is~~aLlkIl~Hars~~p~EVmGlLLG~~d-~~tl~Vtd~F~lP~~--~t-e~rv~a~~ea~ey~~~mle~~~kvgr~ 183 (394)
++|++.++.+|+.||+++.|.|+||+|+|..+ ++++.|+++||+|+. .+ .+++.+ ++.+ +.++.+.+++ ++
T Consensus 1 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~--dp~~-~~~~~~~~~~--~g 75 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYEL--TADD-YRAADAAAQE--QG 75 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSC--CCCS-HHHHHHHHHH--HT
T ss_pred CEeCHHHHHHHHHHHHhcCCcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEE--CHHH-HHHHHHHHHH--CC
Confidence 36899999999999999999999999999987 788999999999986 22 233333 2223 3345556655 45
Q ss_pred CceEEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCCCCCc-eEEEEEEEcc
Q psy9085 184 ENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGK-VCLGSFRTYP 243 (394)
Q Consensus 184 e~iVGWYHSHP~~~~~pS~iDV~tQ~~yQ~~~~p~VaLVvDp~~t~~~Gk-v~i~AFR~~p 243 (394)
+.+||||||||+++||||.+|+.++ ..+++++||+++. .|+ ..++|||+..
T Consensus 76 ~~ivG~yHSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~----~~~~~~~~af~~~~ 127 (153)
T 2kcq_A 76 LDVVGVYHSHPDHPARPSATDLEEA-----TFPGFTYVIVSVR----DGAPEALTAWALAP 127 (153)
T ss_dssp CEEEEEEEECSSSSSSCCHHHHHTC-----CCTTSEEEEEEEE----TTEEEEEEEEEECT
T ss_pred CeEEEEEeCCCCCCCCCCHHHHHhh-----hcCCCeEEEEECC----CCCccEEEEEEEeC
Confidence 9999999999999999999999753 3478899999975 365 4899999954
No 8
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.89 E-value=1.9e-22 Score=177.64 Aligned_cols=138 Identities=20% Similarity=0.212 Sum_probs=106.5
Q ss_pred EEECHHHHHHHHHHHhcCCCceEEEEEeeEEcCCeEEEEEEEecCccCCCCcccccccHHHHHHHHHHHHHHhCCCCceE
Q psy9085 108 IKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAI 187 (394)
Q Consensus 108 V~Is~~aLlkIl~Hars~~p~EVmGlLLG~~d~~tl~Vtd~F~lP~~~te~rv~a~~ea~ey~~~mle~~~kvgr~e~iV 187 (394)
|.|+..++.+|+.||+++.|.|+||+|+|..++++..|+++|++|+..+... .+..++.+ +.++.+.+++ +++.+|
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~-~f~~dp~~-~~~~~~~~~~--~g~~iv 77 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGDDRWVERVYPLNNLDQSPE-HFSMDPRE-QLTAVKDMRK--NGWVML 77 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEETTEEEEEEEECCCCCSCCSS-SCCCCHHH-HHHHHHHHHH--HTCEEE
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCcEEEEEEECCCcCCCCc-eEEECHHH-HHHHHHHHHH--CCCEEE
Confidence 6899999999999999999999999999999888899999999997654332 22233444 4456666665 458999
Q ss_pred EEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCCCCCceEEEEEEEccCCCCCCCCCCCcccccccchhccc
Q psy9085 188 GWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDF 267 (394)
Q Consensus 188 GWYHSHP~~~~~pS~iDV~tQ~~yQ~~~~p~VaLVvDp~~t~~~Gkv~i~AFR~~p~~~~~~~~~~~e~~~iPl~ki~d~ 267 (394)
|||||||+++||||.+|+.++ ..+++++||+++.. .+...++|||+.. .++.++|+.+++..
T Consensus 78 G~~HSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~~---~~~~~~~af~~~~----------~~~~e~~i~~~~~~ 139 (146)
T 2kks_A 78 GNFHSHPATPARPSAEDKRLA-----FDPSLSYLIISLAE---PQKPVCKSFLIKK----------DGVDEEEIILKEEL 139 (146)
T ss_dssp EEEEEESSSCSSCCHHHHTTC-----CSSSCEEEEEECSC---SSSCEEEEEEECS----------SCEEEECEEEESSC
T ss_pred EEEeCCCcCCCCCCHHHHHhh-----hcCCCeEEEEEccC---CCceEEEEEEEeC----------CeEEEEEEEEehhh
Confidence 999999999999999999864 24678999999853 2457899999944 23445666555443
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=99.75 E-value=2.5e-18 Score=147.44 Aligned_cols=109 Identities=22% Similarity=0.180 Sum_probs=79.8
Q ss_pred EEEECHHHHHHHHHHHhcCCCceEEEEEeeEEcCCeEEEEEEEecCccCCCCcccccccHHHHHHHHHHHHHHhCCCCce
Q psy9085 107 DIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENA 186 (394)
Q Consensus 107 ~V~Is~~aLlkIl~Hars~~p~EVmGlLLG~~d~~tl~Vtd~F~lP~~~te~rv~a~~ea~ey~~~mle~~~kvgr~e~i 186 (394)
.|.|+..++.+|+.||+++.|.|+||+|+|... .|+++|++|+..+.. +. .|...| . .+++++
T Consensus 3 ~v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~~----~v~~~~~~p~~~~~~--~~-----~f~~~~----~--~~~~~i 65 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSAHPDEFIALLSGSKD----VMDELIFLPFVSGSV--SA-----VIHLDM----L--PIGMKV 65 (124)
T ss_dssp SCEECHHHHHHHHHHHHHHTTSCCEEEEEESTT----EECEEEECCCCC--------------------------CCCEE
T ss_pred EEEEcHHHHHHHHHHHHhcCCCeeEEEEecccC----EEEEEEECCCCCCCc--Cc-----eeeeee----c--cCCCEE
Confidence 378999999999999999999999999999753 789999999433221 11 122222 1 267999
Q ss_pred EEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCCCCCceEEEEEEE
Q psy9085 187 IGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRT 241 (394)
Q Consensus 187 VGWYHSHP~~~~~pS~iDV~tQ~~yQ~~~~p~VaLVvDp~~t~~~Gkv~i~AFR~ 241 (394)
||||||||+++++||.+|+.++. .+..++||+++.. +...+++|+.
T Consensus 66 vG~~HSHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~~----~~~~~~~f~~ 111 (124)
T 1oi0_A 66 FGTVHSHPSPSCRPSEEDLSLFT-----RFGKYHIIVCYPY----DENSWKCYNR 111 (124)
T ss_dssp EEEEEEESSSCCSCCHHHHHHHH-----HSCSEEEEEETTC----CTTCEEEEET
T ss_pred EEEEEECcCCCCccCHHHHHhhh-----cCCCEEEEEEccC----CCceEEEEec
Confidence 99999999999999999998753 3567999999743 2235666664
No 10
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=99.25 E-value=1.5e-13 Score=113.20 Aligned_cols=44 Identities=27% Similarity=0.295 Sum_probs=19.1
Q ss_pred CCCCccceeecCCCccccccccccchhhcccccccCCCCcccCCCCCcceEEEecC
Q psy9085 1 MAPRYELAVGLKKGHRNTKIKWANSLAQKTSKIVKMRPSRLKGNGSQLVNIFLILG 56 (394)
Q Consensus 1 m~~~~~~~~g~~kg~~~t~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~ 56 (394)
||++|+|||||||||+|||+.. ++||||+||.+|+|++|||..-
T Consensus 1 m~~~~~iavGlnKGhkvtk~~~------------k~r~s~~kg~~tK~tkfVrdiI 44 (100)
T 3izc_k 1 MTVKTGIAIGLNKGKKVTSMTP------------APKISYKKGAASNRTKFVRSLV 44 (100)
T ss_dssp -----------------------------------CCCCSSCSHHHHHHHHHHHHH
T ss_pred CCCccceeeeccCCcccccCCC------------CCCcccccCCCCchhHHHHHHH
Confidence 8999999999999999999999 9999999999999999998643
No 11
>3iz5_k 60S ribosomal protein L36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_k
Probab=99.24 E-value=4.3e-13 Score=112.39 Aligned_cols=44 Identities=39% Similarity=0.485 Sum_probs=10.5
Q ss_pred CCCCccceeecCCCccccccccccchhhcccccccCCCCcccCCCCCcceEEEecC
Q psy9085 1 MAPRYELAVGLKKGHRNTKIKWANSLAQKTSKIVKMRPSRLKGNGSQLVNIFLILG 56 (394)
Q Consensus 1 m~~~~~~~~g~~kg~~~t~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~ 56 (394)
|+|+|+|||||||||+||++.. ++||||+||.+|+|++|||..-
T Consensus 4 ~~~~~~iavGlnKGhkvTk~~~------------k~r~s~~kg~ltK~tkfVrdiI 47 (112)
T 3iz5_k 4 SQPKSGLFVGINKGHVVTKREL------------PPRPSDRKGKGTKRVHFVRNLI 47 (112)
T ss_dssp --------------------------------------------CTTTSSCSHHHH
T ss_pred CCCCCCeeeecCCCcccCCCCC------------CCCcccccCCCcchhHHHHHHH
Confidence 5779999999999999999999 9999999999999999998654
No 12
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=99.11 E-value=8.1e-11 Score=112.10 Aligned_cols=127 Identities=15% Similarity=0.198 Sum_probs=102.0
Q ss_pred eEEEECHHHHHHHHHHHhcCCCceEEEEEeeEEc---CCeEEEEEEEecCccCCCCccccccc--HHHHHHHHHHHHHHh
Q psy9085 106 KDIKISALALLKMVMHARSGGTLEVMGLLLGKID---ANSMIVMDAFALPVEGTETRVNAQAQ--AYEYMTAYIEAAKEV 180 (394)
Q Consensus 106 ~~V~Is~~aLlkIl~Hars~~p~EVmGlLLG~~d---~~tl~Vtd~F~lP~~~te~rv~a~~e--a~ey~~~mle~~~kv 180 (394)
..+.|+..++-|.+..|.. ..++||+|.|... .+..+|+-....|+.++...++...+ ..+|+.
T Consensus 38 ~t~vlPknLlkkFi~IAD~--~Tq~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~--------- 106 (254)
T 2og4_A 38 NVYVLPKNLLKKFIEISDV--KIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD--------- 106 (254)
T ss_dssp CEEEEEHHHHHHHHHTSCS--SSCCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTT---------
T ss_pred cEEEcCHHHHHHHHHHhhc--cceEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchh---------
Confidence 4688999999999988754 4689999999963 35778988888888888776754322 122211
Q ss_pred CCCCceEEEEecCCCCCCcccHhhHHhHHhhhc-cCCCeEEEEEcCCCCCCCCceEEEEEEEccCCCC
Q psy9085 181 GRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQN-FQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYK 247 (394)
Q Consensus 181 gr~e~iVGWYHSHP~~~~~pS~iDV~tQ~~yQ~-~~~p~VaLVvDp~~t~~~Gkv~i~AFR~~p~~~~ 247 (394)
-.++..+||-|+||.-.|++|..|+.|+..||. ..+.+|+|+|.|. .|..+++|||+++.||.
T Consensus 107 l~dLe~LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsft----pgs~sl~af~LT~~G~~ 170 (254)
T 2og4_A 107 TEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFST----PGSVSLSAYNLTDEGYQ 170 (254)
T ss_dssp CTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEE----TTEEEEEEEEECHHHHH
T ss_pred hcCCEecceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecC----CCCceeEEEEcChhhhh
Confidence 157999999999999999999999999999998 4478999999985 58899999999997764
No 13
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=99.01 E-value=5.4e-10 Score=107.48 Aligned_cols=125 Identities=23% Similarity=0.294 Sum_probs=100.1
Q ss_pred eEEEECHHHHHHHHHHHhcCCCceEEEEEeeEEc---CCeEEEEEEEecCccCCCCccccccc--HHHHHHHHHHHHHHh
Q psy9085 106 KDIKISALALLKMVMHARSGGTLEVMGLLLGKID---ANSMIVMDAFALPVEGTETRVNAQAQ--AYEYMTAYIEAAKEV 180 (394)
Q Consensus 106 ~~V~Is~~aLlkIl~Hars~~p~EVmGlLLG~~d---~~tl~Vtd~F~lP~~~te~rv~a~~e--a~ey~~~mle~~~kv 180 (394)
..+.|+..++-+.+.-|. ...++||+|.|... .+..+|+-....|+.++...++...+ ..+| +
T Consensus 39 ~t~vlPknllkkFi~IAD--lrTq~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~----l------ 106 (273)
T 2p8r_A 39 YTYILPKNILKKFITISD--LRTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHEL----L------ 106 (273)
T ss_dssp CEEEEEHHHHHHHHHTSC--SSSCCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTT----T------
T ss_pred cEEEecHHHHHHHHHHhh--ccceEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhh----h------
Confidence 368899999999887664 35689999999963 35678988888888888777754322 1222 1
Q ss_pred CCCCceEEEEecCCCCCCcccHhhHHhHHhhhcc---C--CCeEEEEEcCCCCCCCCceEEEEEEEccCCCC
Q psy9085 181 GRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNF---Q--EPFVAIVIDPVRTISAGKVCLGSFRTYPKGYK 247 (394)
Q Consensus 181 gr~e~iVGWYHSHP~~~~~pS~iDV~tQ~~yQ~~---~--~p~VaLVvDp~~t~~~Gkv~i~AFR~~p~~~~ 247 (394)
.++..+||-|+||.-.|++|..|+.|+..||.. . +.+|+|+|.+. .|..+++|||+++.||.
T Consensus 107 -~dLe~LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsft----pgs~sl~af~LT~~G~~ 173 (273)
T 2p8r_A 107 -RDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFT----PGSVSLTAYKLTPSGYE 173 (273)
T ss_dssp -TTSEEEEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEE----TTEEEEEEEEECHHHHH
T ss_pred -ccccccceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecC----CCCceeEEEEcChHHhh
Confidence 579999999999999999999999999999964 2 47899999974 68899999999997764
No 14
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=98.98 E-value=3.5e-11 Score=99.66 Aligned_cols=40 Identities=28% Similarity=0.230 Sum_probs=37.2
Q ss_pred CccceeecCCCcccc---ccccccchhhcccccccCCCCcccCCCCCcceEEEec
Q psy9085 4 RYELAVGLKKGHRNT---KIKWANSLAQKTSKIVKMRPSRLKGNGSQLVNIFLIL 55 (394)
Q Consensus 4 ~~~~~~g~~kg~~~t---~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~ 55 (394)
+++|||||||||+|| ++.. ++||||+||.+|+|++|||..
T Consensus 2 ~~~iavGlnKGhkvT~~~k~~~------------k~r~s~rkg~ltK~tkfVrdi 44 (104)
T 4a18_Q 2 AKGQAVGINKGFITTQLEKKLQ------------KHSAVQRKGKLGKRVALVRQV 44 (104)
T ss_dssp CTTSTTSSSCSCCCCCCCTTTS------------CCCSTTCCSCCCHHHHHHHHH
T ss_pred CCCeeeecCCCcccccccccCC------------CCCcccccCCCcchHHHHHHH
Confidence 589999999999999 8888 999999999999999999864
No 15
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=98.24 E-value=2e-06 Score=88.58 Aligned_cols=128 Identities=15% Similarity=0.201 Sum_probs=93.1
Q ss_pred EEEECHHHHHHHHHHHhcCCCceEEEEEeeEEcC---CeEEEEEEEecCccCCCCcccccccHHHHHHHHHHHHHHhCCC
Q psy9085 107 DIKISALALLKMVMHARSGGTLEVMGLLLGKIDA---NSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRL 183 (394)
Q Consensus 107 ~V~Is~~aLlkIl~Hars~~p~EVmGlLLG~~d~---~tl~Vtd~F~lP~~~te~rv~a~~ea~ey~~~mle~~~kvgr~ 183 (394)
.+.|+...+-+.+.-|- ...++||+|.|.... +..+|+.....|+.|+...|... +..+ .+.... -.+
T Consensus 350 tyVlPkNLLkKFI~IAD--lrTQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp-~lp~--he~~~~----l~d 420 (565)
T 3sbg_A 350 VYVLPKNLLKKFIEISD--VKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQIS-NIPD--IGDLPD----TEG 420 (565)
T ss_dssp EEEEEHHHHHHHHHHSC--SSSCCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEEC-CCCC--CTTSTT----CTT
T ss_pred EEEccHHHHHHHHHHhh--ccceeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECC-CCCc--cccccc----ccc
Confidence 57899999999887664 456899999999642 45788877777888887777543 1100 000000 157
Q ss_pred CceEEEEecCCCCCCcccHhhHHhHHhhhc-cCCCeEEEEEcCCCCCCCCceEEEEEEEccCCCC
Q psy9085 184 ENAIGWYHSHPGYGCWLSGIDVSTQMLNQN-FQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYK 247 (394)
Q Consensus 184 e~iVGWYHSHP~~~~~pS~iDV~tQ~~yQ~-~~~p~VaLVvDp~~t~~~Gkv~i~AFR~~p~~~~ 247 (394)
+..+||-|+||.-.|++|..|+.|+...-. ....+|.++|+-. .|.+++.||.++++||.
T Consensus 421 Le~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvsft----PGS~SLsAy~LT~eGye 481 (565)
T 3sbg_A 421 LELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFST----PGSVSLSAYNLTDEGYQ 481 (565)
T ss_dssp CEEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEEEE----TTEEEEEEEEECHHHHH
T ss_pred CEecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEEec----CCceEEEEEecCHhHHH
Confidence 999999999999999999999999764322 1135677777643 69999999999998763
No 16
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=86.33 E-value=4.2 Score=34.45 Aligned_cols=91 Identities=20% Similarity=0.115 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeEEcCCeEEEEEEEecCccCCCCcccccccHHHHHHHHHHHHHHhCCCCceEEEE
Q psy9085 111 SALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWY 190 (394)
Q Consensus 111 s~~aLlkIl~Hars~~p~EVmGlLLG~~d~~tl~Vtd~F~lP~~~te~rv~a~~ea~ey~~~mle~~~kvgr~e~iVGWY 190 (394)
++..+...+.....+.+.|+..+|+=......+.....| .|+-+.... .+.+ .++.+-+ .+-.-|..-
T Consensus 7 s~~~v~~~l~~~l~~~~~E~f~vl~Ld~~n~li~~~~l~----~Gt~~~~~v--~pRe----i~~~Al~--~~A~~vIl~ 74 (126)
T 2qlc_A 7 GARDVFEYMKGRIPDETKEHLFVLFLSTKNQILRHETIT----IGTLTASLI--HPRE----IFKAAIR--ESAHSIILV 74 (126)
T ss_dssp SHHHHHHHHTTCCSCTTSCEEEEEEECTTCBEEEEEEEE----ESSCCGGGC--CHHH----HHHHHHH--TTCSEEEEE
T ss_pred CHHHHHHHHHHHhCcCCCeEEEEEEEcCCCCEEEEEEec----CCCCCcEee--cHHH----HHHHHHH--cCCcEEEEE
Confidence 455555555554455677876655421112222332233 344333222 1323 2233323 346888899
Q ss_pred ecCCCCCCcccHhhHH-hHHhhhc
Q psy9085 191 HSHPGYGCWLSGIDVS-TQMLNQN 213 (394)
Q Consensus 191 HSHP~~~~~pS~iDV~-tQ~~yQ~ 213 (394)
|.||.+.+.||.-|+. |+...+.
T Consensus 75 HNHPSG~~~PS~~D~~~T~~l~~a 98 (126)
T 2qlc_A 75 HNHPSGDVQPSNADKQVTSILKKA 98 (126)
T ss_dssp EECSSSCCSCCHHHHHHHHHHHHH
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998 6555543
No 17
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=20.12 E-value=38 Score=24.51 Aligned_cols=11 Identities=27% Similarity=0.906 Sum_probs=8.7
Q ss_pred CceEEEEecCC
Q psy9085 184 ENAIGWYHSHP 194 (394)
Q Consensus 184 e~iVGWYHSHP 194 (394)
-++||||-+.-
T Consensus 24 g~ivgwyct~l 34 (62)
T 2rh2_A 24 GQIVGWYCTNL 34 (62)
T ss_dssp EEEEEEECCSS
T ss_pred ceEeEEEEccc
Confidence 57999998753
Done!