Query psy9086
Match_columns 115
No_of_seqs 110 out of 222
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 18:29:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01158 Ribosomal_L36e: Ribos 100.0 3.7E-54 8.1E-59 307.2 7.2 98 3-112 1-98 (98)
2 PTZ00196 60S ribosomal protein 100.0 1.8E-53 3.9E-58 304.1 9.3 98 3-112 1-98 (98)
3 KOG3452|consensus 100.0 4.3E-51 9.3E-56 293.2 9.1 102 1-114 1-102 (102)
4 COG5051 RPL36A Ribosomal prote 100.0 2.1E-34 4.6E-39 204.8 7.9 96 1-108 1-96 (97)
5 KOG2659|consensus 47.8 31 0.00067 28.3 4.0 66 43-108 78-150 (228)
6 PF10607 CLTH: CTLH/CRA C-term 38.9 97 0.0021 21.6 5.0 43 62-106 40-82 (145)
7 PRK14132 riboflavin kinase; Pr 33.4 21 0.00045 26.8 0.9 17 51-67 22-38 (126)
8 PF08068 DKCLD: DKCLD (NUC011) 30.7 27 0.00058 23.3 1.0 19 58-76 25-43 (59)
9 PF13058 DUF3920: Protein of u 24.2 79 0.0017 24.0 2.6 29 59-94 96-124 (126)
10 PRK14165 winged helix-turn-hel 23.7 38 0.00082 27.1 0.9 17 51-67 110-126 (217)
11 PF01982 CTP-dep_RFKase: Domai 23.4 52 0.0011 24.5 1.5 16 51-66 16-31 (121)
12 PF12169 DNA_pol3_gamma3: DNA 23.1 2.6E+02 0.0057 19.3 5.8 51 54-104 4-56 (143)
No 1
>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.
Probab=100.00 E-value=3.7e-54 Score=307.24 Aligned_cols=98 Identities=78% Similarity=1.098 Sum_probs=84.6
Q ss_pred CccccceecCCCccccccccchhhhhhhhhhccCCcccccccCCcchhHHHHHHhhhhcCchhHHHHHHHhhhchhhHHH
Q psy9086 3 PRYELAVGLKKGHRNTKIKWANSLAQKTSKIVKMRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRAL 82 (115)
Q Consensus 3 ~~~~iavGlnkGh~vTk~~~~~~~~~~~~~~~k~r~s~~kg~~tk~~k~Vr~vIrEV~GfaPYEkr~mELLKvskdKrAL 82 (115)
++||||||||+||+||++.+ ++|||+++|.+|+|++||||||+|||||||||+|+||||++|+||+||
T Consensus 1 ~~~~iavGlnkGh~vtk~~~------------~~r~s~~kg~~tk~~kfvr~vIrEv~GfaPYEkr~mELlkv~kdKrAl 68 (98)
T PF01158_consen 1 PRYGIAVGLNKGHKVTKNVS------------KPRPSRRKGRLTKRTKFVRDVIREVCGFAPYEKRAMELLKVSKDKRAL 68 (98)
T ss_dssp --TTSTTSSS-S-----TTS---------------STTS-SHHCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHH
T ss_pred CCCceeeeCCCCcccCCCCC------------CCCcccccCccchhHHHHHHHHHHhcCCChHHHHHHHHHhcchhHHHH
Confidence 57999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy9086 83 KFLKRRLGTHIRAKRKREELSNILTQMRKA 112 (115)
Q Consensus 83 KF~KKRLGth~RAKrKreeL~~vl~~~Rk~ 112 (115)
||+|||||||+|||+|+|||++||++||++
T Consensus 69 Kf~KKRlGth~RAKrKrEel~~vl~~~rk~ 98 (98)
T PF01158_consen 69 KFAKKRLGTHIRAKRKREELSNVLAAMRKA 98 (98)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 2
>PTZ00196 60S ribosomal protein L36; Provisional
Probab=100.00 E-value=1.8e-53 Score=304.07 Aligned_cols=98 Identities=55% Similarity=0.876 Sum_probs=95.8
Q ss_pred CccccceecCCCccccccccchhhhhhhhhhccCCcccccccCCcchhHHHHHHhhhhcCchhHHHHHHHhhhchhhHHH
Q psy9086 3 PRYELAVGLKKGHRNTKIKWANSLAQKTSKIVKMRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKRAL 82 (115)
Q Consensus 3 ~~~~iavGlnkGh~vTk~~~~~~~~~~~~~~~k~r~s~~kg~~tk~~k~Vr~vIrEV~GfaPYEkr~mELLKvskdKrAL 82 (115)
++||||||||+||+||++.+ ++|||+++|.+|||++||||||+|||||||||+|+||||++|+||+||
T Consensus 1 ~~~g~avGlnKGh~vtk~~~------------~~r~s~rkg~~tkr~~fVr~vIrEV~GfaPYErr~mELLkv~kdKrAl 68 (98)
T PTZ00196 1 PRTGIAVGLNKGHIVTKRAR------------KPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRAL 68 (98)
T ss_pred CCCceeeecCCCcccCcCCC------------CCCcccccCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHhcchHHHH
Confidence 46899999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy9086 83 KFLKRRLGTHIRAKRKREELSNILTQMRKA 112 (115)
Q Consensus 83 KF~KKRLGth~RAKrKreeL~~vl~~~Rk~ 112 (115)
||+|+|||||+|||+|+|||++||++||+.
T Consensus 69 KfaKkRlGth~RaK~Kreel~~vl~~~rkk 98 (98)
T PTZ00196 69 KYAKKRLGTHKRAKAKRDEIQEALRAQRKK 98 (98)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999973
No 3
>KOG3452|consensus
Probab=100.00 E-value=4.3e-51 Score=293.15 Aligned_cols=102 Identities=72% Similarity=0.950 Sum_probs=100.1
Q ss_pred CCCccccceecCCCccccccccchhhhhhhhhhccCCcccccccCCcchhHHHHHHhhhhcCchhHHHHHHHhhhchhhH
Q psy9086 1 MAPRYELAVGLKKGHRNTKIKWANSLAQKTSKIVKMRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKR 80 (115)
Q Consensus 1 ma~~~~iavGlnkGh~vTk~~~~~~~~~~~~~~~k~r~s~~kg~~tk~~k~Vr~vIrEV~GfaPYEkr~mELLKvskdKr 80 (115)
|+..||++||||+||++|++++ +||||+++|.+|+||+||+|||+|||||||||+++||||++|+||+
T Consensus 1 m~~~~~~~vglnkgh~~tk~~~------------~pr~s~~kg~~sk~tkfvr~lirEv~G~aPyErr~meLlkvskdkr 68 (102)
T KOG3452|consen 1 MAVCYGLAVGLNKGHKVTKRVS------------KPRQSRRKGETSKRTKFVRDLIREVAGFAPYERRAMELLKVSKDKR 68 (102)
T ss_pred CCcccceeecccccchhhcccC------------CCCcCccccchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHcccHH
Confidence 8889999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q psy9086 81 ALKFLKRRLGTHIRAKRKREELSNILTQMRKAAH 114 (115)
Q Consensus 81 ALKF~KKRLGth~RAKrKreeL~~vl~~~Rk~~~ 114 (115)
|+||+|+|||||+|||+|+|||+|||++||++++
T Consensus 69 A~K~lKkRlGth~RAk~KrEELsnvl~~~rk~~~ 102 (102)
T KOG3452|consen 69 ALKLLKKRLGTHKRAKRKREELSNVLAAMRKAHA 102 (102)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999864
No 4
>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-34 Score=204.77 Aligned_cols=96 Identities=47% Similarity=0.679 Sum_probs=92.4
Q ss_pred CCCccccceecCCCccccccccchhhhhhhhhhccCCcccccccCCcchhHHHHHHhhhhcCchhHHHHHHHhhhchhhH
Q psy9086 1 MAPRYELAVGLKKGHRNTKIKWANSLAQKTSKIVKMRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKR 80 (115)
Q Consensus 1 ma~~~~iavGlnkGh~vTk~~~~~~~~~~~~~~~k~r~s~~kg~~tk~~k~Vr~vIrEV~GfaPYEkr~mELLKvskdKr 80 (115)
|+...|+++|+|+|-+||++.+ .+|||+++|.+|+|+.||+++++|++||+|||+++||||++|.|++
T Consensus 1 ri~~~g~~~glNkgKkvt~r~p------------~~rps~kkgq~s~Rt~fvrsivrEiaGlsPyErr~i~Lirns~~kr 68 (97)
T COG5051 1 RIMAPGLVVGLNKGKKVTKRQP------------PERPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKR 68 (97)
T ss_pred CCcccchhhhhcccceeeeccC------------CCCcchhhhccccHHHHHHHHHHHHccCCHHHHHHHHHHHhcccHH
Confidence 3455799999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy9086 81 ALKFLKRRLGTHIRAKRKREELSNILTQ 108 (115)
Q Consensus 81 ALKF~KKRLGth~RAKrKreeL~~vl~~ 108 (115)
|.|++|||||||+||+.|.|||.++|++
T Consensus 69 ArKlakKRLGs~kRAkaKvEel~~~i~~ 96 (97)
T COG5051 69 ARKLAKKRLGSLKRAKAKVEELTSVIQS 96 (97)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999974
No 5
>KOG2659|consensus
Probab=47.85 E-value=31 Score=28.30 Aligned_cols=66 Identities=23% Similarity=0.314 Sum_probs=48.0
Q ss_pred ccCCcchhHHHHHHhhhhcCch------hHHHHHHHhhhchhhHHHHHHHHhhhhhHH-HHHHHHHHHHHHHH
Q psy9086 43 GIQTKNTKFTRDLVREVCGHAP------YEKRAMELLKVSKDKRALKFLKRRLGTHIR-AKRKREELSNILTQ 108 (115)
Q Consensus 43 g~~tk~~k~Vr~vIrEV~GfaP------YEkr~mELLKvskdKrALKF~KKRLGth~R-AKrKreeL~~vl~~ 108 (115)
|....-..++.++-.|+..-.+ -..+.+||++-++-..|++|++-+|--.-- .-++.++|..++..
T Consensus 78 G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~l 150 (228)
T KOG2659|consen 78 GQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLAL 150 (228)
T ss_pred ccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 5555556667777777766665 356999999999999999999999844332 23677888777653
No 6
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=38.92 E-value=97 Score=21.60 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=29.4
Q ss_pred CchhHHHHHHHhhhchhhHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy9086 62 HAPYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNIL 106 (115)
Q Consensus 62 faPYEkr~mELLKvskdKrALKF~KKRLGth~RAKrKreeL~~vl 106 (115)
|.=+-...+||++.++-..|+.|+++.+ ++- ...-.+++..++
T Consensus 40 f~L~~q~fiell~~~~~~~Ai~y~r~~l-~~~-~~~~~~~l~~~~ 82 (145)
T PF10607_consen 40 FELRCQQFIELLREGDIMEAIEYARKHL-SPF-NDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh-hhh-HHHHHHHHHHHH
Confidence 4455668899999999999999999988 322 223444444443
No 7
>PRK14132 riboflavin kinase; Provisional
Probab=33.38 E-value=21 Score=26.77 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.2
Q ss_pred HHHHHHhhhhcCchhHH
Q psy9086 51 FTRDLVREVCGHAPYEK 67 (115)
Q Consensus 51 ~Vr~vIrEV~GfaPYEk 67 (115)
..++-++|.+||.||.=
T Consensus 22 ~Y~~qf~~~LGf~PyPG 38 (126)
T PRK14132 22 PYKEKFKEKLGFTPYEG 38 (126)
T ss_pred HHHHHHHHHhCCcCCCC
Confidence 46788999999999963
No 8
>PF08068 DKCLD: DKCLD (NUC011) domain; InterPro: IPR012960 This is an N-terminal domain of dyskerin-like proteins, which is often associated with the TruB N-terminal(IPR002501 from INTERPRO) and PUA(IPR002478 from INTERPRO) domains [].; PDB: 3ZV0_D 3UAI_A 3U28_A 2AUS_C 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=30.67 E-value=27 Score=23.34 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=13.5
Q ss_pred hhhcCchhHHHHHHHhhhc
Q psy9086 58 EVCGHAPYEKRAMELLKVS 76 (115)
Q Consensus 58 EV~GfaPYEkr~mELLKvs 76 (115)
.-+|..|++|-+-|+|+.|
T Consensus 25 ~~~G~~P~~R~i~~~i~~G 43 (59)
T PF08068_consen 25 PPYGCSPLKRPIEEYIKYG 43 (59)
T ss_dssp TTSS--GGGS-HHHHHHTE
T ss_pred cccCcCcccCCHHHHHhCC
Confidence 4589999999999999853
No 9
>PF13058 DUF3920: Protein of unknown function (DUF3920)
Probab=24.19 E-value=79 Score=24.00 Aligned_cols=29 Identities=41% Similarity=0.629 Sum_probs=22.6
Q ss_pred hhcCchhHHHHHHHhhhchhhHHHHHHHHhhhhhHH
Q psy9086 59 VCGHAPYEKRAMELLKVSKDKRALKFLKRRLGTHIR 94 (115)
Q Consensus 59 V~GfaPYEkr~mELLKvskdKrALKF~KKRLGth~R 94 (115)
..|-.|||.|.||- | |..|+-..|...+|
T Consensus 96 yvg~e~yEeR~ie~-----D--Ar~FAe~kl~ey~~ 124 (126)
T PF13058_consen 96 YVGKEPYEERWIEK-----D--ARAFAERKLDEYKR 124 (126)
T ss_pred eeccchHHHHHHHH-----H--HHHHHHHHHHHHhc
Confidence 37999999999984 5 88999877765543
No 10
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=23.66 E-value=38 Score=27.08 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=14.3
Q ss_pred HHHHHHhhhhcCchhHH
Q psy9086 51 FTRDLVREVCGHAPYEK 67 (115)
Q Consensus 51 ~Vr~vIrEV~GfaPYEk 67 (115)
..++-++|.+||.||.=
T Consensus 110 ~Y~~~f~~~lGf~PypG 126 (217)
T PRK14165 110 GYKIQFEEKLGFIPYPG 126 (217)
T ss_pred HHHHHHHHHhCCcCCCC
Confidence 36788999999999964
No 11
>PF01982 CTP-dep_RFKase: Domain of unknown function DUF120; InterPro: IPR023602 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents a CTP-dependent riboflavin kinase domain, found primarily in archaea, that catalyses the phosphorylation of riboflavin to form flavin mononucleotide in riboflavin biosynthesis. Its structure resembles a RIFT barrel, structurally similar to but topologically distinct from bacterial and eukaryotic examples []. The N-terminal is a winged helix-turn-helix DNA-binding domain, and the C-terminal half is most similar in sequence to a group of cradle-loop barrels.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2VBV_A 2VBU_A 2VBS_A 2VBT_A 2P3M_A 2OYN_A 3CTA_A.
Probab=23.42 E-value=52 Score=24.46 Aligned_cols=16 Identities=38% Similarity=0.465 Sum_probs=10.6
Q ss_pred HHHHHHhhhhcCchhH
Q psy9086 51 FTRDLVREVCGHAPYE 66 (115)
Q Consensus 51 ~Vr~vIrEV~GfaPYE 66 (115)
..++-++|..||.||.
T Consensus 16 ~Y~~qf~~~LGf~PyP 31 (121)
T PF01982_consen 16 GYRRQFREKLGFEPYP 31 (121)
T ss_dssp HHHHHHHHHCSS---S
T ss_pred HHHHHHHHHhCCCCCC
Confidence 3677889999999995
No 12
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=23.09 E-value=2.6e+02 Score=19.31 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=32.3
Q ss_pred HHHhhhhcCchhHH--HHHHHhhhchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9086 54 DLVREVCGHAPYEK--RAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 104 (115)
Q Consensus 54 ~vIrEV~GfaPYEk--r~mELLKvskdKrALKF~KKRLGth~RAKrKreeL~~ 104 (115)
+-|+++.|..|.|. .+++.|-.++-..|+.++.+=+-.-+-...=.++|.+
T Consensus 4 e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~ 56 (143)
T PF12169_consen 4 EDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIE 56 (143)
T ss_dssp HHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 56899999999997 5566666677788888887644333333333344433
Done!