Query psy9086
Match_columns 115
No_of_seqs 110 out of 222
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 18:29:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3izc_k 60S ribosomal protein R 100.0 2.5E-57 8.5E-62 323.9 0.3 100 1-112 1-100 (100)
2 3iz5_k 60S ribosomal protein L 100.0 9.3E-57 3.2E-61 326.2 -0.2 102 1-114 4-105 (112)
3 4a18_Q RPL36, 60S ribosomal pr 100.0 1.9E-53 6.4E-58 305.7 9.2 96 4-111 2-103 (104)
4 3qks_C DNA double-strand break 44.9 7.8 0.00027 22.6 1.0 13 62-74 4-16 (34)
5 3r0a_A Putative transcriptiona 33.6 28 0.00097 23.1 2.6 26 52-77 14-39 (123)
6 2oyn_A Hypothetical protein MJ 25.5 28 0.00096 25.6 1.5 18 49-66 26-43 (146)
7 2yy0_A C-MYC-binding protein; 21.7 1.2E+02 0.0042 18.3 3.7 10 81-90 3-12 (53)
8 3mxn_A RECQ-mediated genome in 14.3 1.5E+02 0.0052 21.9 3.4 24 46-69 72-95 (157)
9 1ng7_A Poliovirus 3A-N, genome 12.7 89 0.0031 19.9 1.5 21 68-88 21-41 (60)
10 3tgu_G UQCRQ, mitochondrial ub 12.3 19 0.00066 24.0 -1.9 12 60-71 16-27 (81)
No 1
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=100.00 E-value=2.5e-57 Score=323.93 Aligned_cols=100 Identities=42% Similarity=0.652 Sum_probs=75.9
Q ss_pred CCCccccceecCCCccccccccchhhhhhhhhhccCCcccccccCCcchhHHHHHHhhhhcCchhHHHHHHHhhhchhhH
Q psy9086 1 MAPRYELAVGLKKGHRNTKIKWANSLAQKTSKIVKMRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKR 80 (115)
Q Consensus 1 ma~~~~iavGlnkGh~vTk~~~~~~~~~~~~~~~k~r~s~~kg~~tk~~k~Vr~vIrEV~GfaPYEkr~mELLKvskdKr 80 (115)
||++||||||||+||+||++.+ +||||+++|.+|||++||||||+|||||||||+|+||||++|+||+
T Consensus 1 m~~~~~iavGlnKGhkvtk~~~------------k~r~s~~kg~~tK~tkfVrdiIrEV~GfaPYErr~mELLkvskdKr 68 (100)
T 3izc_k 1 MTVKTGIAIGLNKGKKVTSMTP------------APKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKR 68 (100)
T ss_dssp -----------------------------------CCCCSSCSHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHTSCC
T ss_pred CCCccceeeeccCCcccccCCC------------CCCcccccCCCCchhHHHHHHHHHHhcCchhHHHHHHHHHhcchHH
Confidence 8999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy9086 81 ALKFLKRRLGTHIRAKRKREELSNILTQMRKA 112 (115)
Q Consensus 81 ALKF~KKRLGth~RAKrKreeL~~vl~~~Rk~ 112 (115)
||||+|||||||+|||+|+|||++||++||++
T Consensus 69 AlKf~KKRlGth~RAKrKreel~~vl~~~Rk~ 100 (100)
T 3izc_k 69 ARKVAKKRLGSFTRAKAKVEEMNNIIAASRRH 100 (100)
T ss_dssp SHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999973
No 2
>3iz5_k 60S ribosomal protein L36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_k
Probab=100.00 E-value=9.3e-57 Score=326.24 Aligned_cols=102 Identities=58% Similarity=0.817 Sum_probs=68.6
Q ss_pred CCCccccceecCCCccccccccchhhhhhhhhhccCCcccccccCCcchhHHHHHHhhhhcCchhHHHHHHHhhhchhhH
Q psy9086 1 MAPRYELAVGLKKGHRNTKIKWANSLAQKTSKIVKMRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSKDKR 80 (115)
Q Consensus 1 ma~~~~iavGlnkGh~vTk~~~~~~~~~~~~~~~k~r~s~~kg~~tk~~k~Vr~vIrEV~GfaPYEkr~mELLKvskdKr 80 (115)
|+|+||||||||+||+||++.+ ++|||+++|.+|||++||||||+|||||||||+|+||||++|+|||
T Consensus 4 ~~~~~~iavGlnKGhkvTk~~~------------k~r~s~~kg~ltK~tkfVrdiIrEV~GfAPYErR~mELLKvskDKR 71 (112)
T 3iz5_k 4 SQPKSGLFVGINKGHVVTKREL------------PPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKR 71 (112)
T ss_dssp --------------------------------------------CTTTSSCSHHHHHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred CCCCCCeeeecCCCcccCCCCC------------CCCcccccCCCcchhHHHHHHHHHHhcCchHHHHHHHHHHhhhhHH
Confidence 5678999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q psy9086 81 ALKFLKRRLGTHIRAKRKREELSNILTQMRKAAH 114 (115)
Q Consensus 81 ALKF~KKRLGth~RAKrKreeL~~vl~~~Rk~~~ 114 (115)
||||+|+|||||+|||+|+|||++||++||++++
T Consensus 72 ALKf~KKRlGth~RAKrKreel~~vl~~~Rka~~ 105 (112)
T 3iz5_k 72 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGG 105 (112)
T ss_dssp HHHHHSSCCSHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999754
No 3
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=100.00 E-value=1.9e-53 Score=305.68 Aligned_cols=96 Identities=42% Similarity=0.565 Sum_probs=94.3
Q ss_pred ccccceecCCCcccc---ccccchhhhhhhhhhccCCcccccccCCcchhHHHHHHhhhhcCchhHHHHHHHhhhch---
Q psy9086 4 RYELAVGLKKGHRNT---KIKWANSLAQKTSKIVKMRPSRLKGIQTKNTKFTRDLVREVCGHAPYEKRAMELLKVSK--- 77 (115)
Q Consensus 4 ~~~iavGlnkGh~vT---k~~~~~~~~~~~~~~~k~r~s~~kg~~tk~~k~Vr~vIrEV~GfaPYEkr~mELLKvsk--- 77 (115)
++|||||||+||+|| ++.+ +||||+++|.+|||++||||||+|||||||||+|+||||++|+
T Consensus 2 ~~~iavGlnKGhkvT~~~k~~~------------k~r~s~rkg~ltK~tkfVrdiIrEV~GfaPYErR~mELLKvsk~~~ 69 (104)
T 4a18_Q 2 AKGQAVGINKGFITTQLEKKLQ------------KHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKD 69 (104)
T ss_dssp CTTSTTSSSCSCCCCCCCTTTS------------CCCSTTCCSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHH
T ss_pred CCCeeeecCCCcccccccccCC------------CCCcccccCCCcchHHHHHHHHHHHhcCchhHHHHHHHHHcccchh
Confidence 589999999999999 9999 9999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy9086 78 DKRALKFLKRRLGTHIRAKRKREELSNILTQMRK 111 (115)
Q Consensus 78 dKrALKF~KKRLGth~RAKrKreeL~~vl~~~Rk 111 (115)
||+||||+|+|||||+|||+|+|||++||++||+
T Consensus 70 dKRAlKf~KKRlGth~RAKrKreel~~vl~~~Rk 103 (104)
T 4a18_Q 70 SKKATKIARKRLGTHRRAKVKKALLEEAVRAQRK 103 (104)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999996
No 4
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=44.94 E-value=7.8 Score=22.59 Aligned_cols=13 Identities=15% Similarity=0.498 Sum_probs=9.4
Q ss_pred CchhHHHHHHHhh
Q psy9086 62 HAPYEKRAMELLK 74 (115)
Q Consensus 62 faPYEkr~mELLK 74 (115)
|.|+|.+++||+-
T Consensus 4 Ft~~ElKiI~l~G 16 (34)
T 3qks_C 4 FTEFELKIIDILG 16 (34)
T ss_dssp --CHHHHHHHHC-
T ss_pred ccHHHHHHHHHHc
Confidence 7899999999963
No 5
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=33.58 E-value=28 Score=23.13 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=21.6
Q ss_pred HHHHHhhhhcCchhHHHHHHHhhhch
Q psy9086 52 TRDLVREVCGHAPYEKRAMELLKVSK 77 (115)
Q Consensus 52 Vr~vIrEV~GfaPYEkr~mELLKvsk 77 (115)
+.+++..+.||.|.|..++.+|-...
T Consensus 14 ~~~~l~~~~gLt~~e~~il~~L~~~~ 39 (123)
T 3r0a_A 14 VEDVIKCALNLTKADLNVMKSFLNEP 39 (123)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHST
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCC
Confidence 46778888999999999999887543
No 6
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=25.55 E-value=28 Score=25.56 Aligned_cols=18 Identities=22% Similarity=0.587 Sum_probs=15.1
Q ss_pred hhHHHHHHhhhhcCchhH
Q psy9086 49 TKFTRDLVREVCGHAPYE 66 (115)
Q Consensus 49 ~k~Vr~vIrEV~GfaPYE 66 (115)
..+.++-++|.+||.||.
T Consensus 26 l~~Y~~qf~~~LGF~PfP 43 (146)
T 2oyn_A 26 LPPYKEIFKKILGFEPYE 43 (146)
T ss_dssp SHHHHHHHHHHHSSCCCS
T ss_pred CHHHHHHHHHHhCCcCCC
Confidence 345788999999999995
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.73 E-value=1.2e+02 Score=18.32 Aligned_cols=10 Identities=70% Similarity=1.095 Sum_probs=0.0
Q ss_pred HHHHHHHhhh
Q psy9086 81 ALKFLKRRLG 90 (115)
Q Consensus 81 ALKF~KKRLG 90 (115)
|+.|+|+-||
T Consensus 3 AlefIk~~LG 12 (53)
T 2yy0_A 3 ALDFLKHHLG 12 (53)
T ss_dssp ----------
T ss_pred HHHHHHHHcC
Confidence 6777777777
No 8
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=14.27 E-value=1.5e+02 Score=21.93 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=19.6
Q ss_pred CcchhHHHHHHhhhhcCchhHHHH
Q psy9086 46 TKNTKFTRDLVREVCGHAPYEKRA 69 (115)
Q Consensus 46 tk~~k~Vr~vIrEV~GfaPYEkr~ 69 (115)
.=-+.|..+|+.+..||+|-|-..
T Consensus 72 ~LdV~f~~~VLt~lIGfS~~E~~~ 95 (157)
T 3mxn_A 72 YLDVDFVDEILTSLIGFSVPEMKQ 95 (157)
T ss_dssp EEEEEECHHHHHHHHSCCHHHHHH
T ss_pred eEEEEeeHHHHHhhhCCCHHHHHH
Confidence 335678899999999999999544
No 9
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=12.71 E-value=89 Score=19.93 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=17.7
Q ss_pred HHHHHhhhchhhHHHHHHHHh
Q psy9086 68 RAMELLKVSKDKRALKFLKRR 88 (115)
Q Consensus 68 r~mELLKvskdKrALKF~KKR 88 (115)
.++|||+..++...+.|+++.
T Consensus 21 aI~DLLksvds~eV~~YC~~k 41 (60)
T 1ng7_A 21 CINDLLQAVDSQEVRDYCEKK 41 (60)
T ss_dssp TTHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHC
Confidence 489999998888889999874
No 10
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=12.31 E-value=19 Score=23.98 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=9.4
Q ss_pred hcCchhHHHHHH
Q psy9086 60 CGHAPYEKRAME 71 (115)
Q Consensus 60 ~GfaPYEkr~mE 71 (115)
.+++|||++++-
T Consensus 16 YsLSP~~Qr~~a 27 (81)
T 3tgu_G 16 YSLSPFEQRAIP 27 (81)
T ss_dssp EEECTTTBCSSC
T ss_pred EEeCcccccccc
Confidence 578999988653
Done!