Query psy9086
Match_columns 115
No_of_seqs 110 out of 222
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 18:30:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9086.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9086hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g47a1 g.39.1.3 (A:1-35) Pinc 36.4 3.6 0.00026 22.8 0.1 8 60-67 15-22 (35)
2 d1sfxa_ a.4.5.50 (A:) Hypothet 24.8 24 0.0018 21.5 2.6 15 60-74 16-30 (109)
3 d3ctaa2 b.43.5.2 (A:90-220) CT 16.9 22 0.0016 24.0 1.1 16 52-67 26-41 (131)
4 d2bj7a1 a.43.1.3 (A:1-50) Nick 16.5 29 0.0021 19.8 1.4 17 44-60 26-42 (50)
5 d2hzaa1 a.43.1.3 (A:1-48) Nick 16.3 34 0.0025 19.3 1.7 18 43-60 23-40 (48)
6 d1tuaa1 d.51.1.1 (A:1-84) Hypo 16.3 27 0.002 21.3 1.4 23 49-73 59-82 (84)
7 d2vbua1 b.43.5.2 (A:2-132) CTP 15.7 24 0.0018 23.7 1.1 15 52-66 26-40 (131)
8 d3bqoa1 a.146.1.1 (A:62-265) T 14.0 74 0.0054 22.9 3.5 49 52-108 111-159 (204)
9 d2hkja2 d.14.1.3 (A:307-470) T 13.5 91 0.0067 21.6 3.8 25 79-103 135-159 (164)
10 d1oywa2 c.37.1.19 (A:1-206) Re 12.2 67 0.0049 20.4 2.6 26 51-76 12-40 (206)
No 1
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.36 E-value=3.6 Score=22.76 Aligned_cols=8 Identities=63% Similarity=0.796 Sum_probs=7.0
Q ss_pred hcCchhHH
Q psy9086 60 CGHAPYEK 67 (115)
Q Consensus 60 ~GfaPYEk 67 (115)
.||+|+|+
T Consensus 15 ~gF~p~Ek 22 (35)
T d1g47a1 15 GGFAPAEK 22 (35)
T ss_dssp CBCCSTTT
T ss_pred cCCCchHH
Confidence 59999997
No 2
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=24.81 E-value=24 Score=21.46 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=13.5
Q ss_pred hcCchhHHHHHHHhh
Q psy9086 60 CGHAPYEKRAMELLK 74 (115)
Q Consensus 60 ~GfaPYEkr~mELLK 74 (115)
.||.|+|.+++..|-
T Consensus 16 lGlt~~e~~v~~~L~ 30 (109)
T d1sfxa_ 16 LSFKPSDVRIYSLLL 30 (109)
T ss_dssp TCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 999999999988775
No 3
>d3ctaa2 b.43.5.2 (A:90-220) CTP-dependent riboflavin kinase, Rfk {Thermoplasma acidophilum [TaxId: 2303]}
Probab=16.86 E-value=22 Score=23.99 Aligned_cols=16 Identities=25% Similarity=0.156 Sum_probs=13.1
Q ss_pred HHHHHhhhhcCchhHH
Q psy9086 52 TRDLVREVCGHAPYEK 67 (115)
Q Consensus 52 Vr~vIrEV~GfaPYEk 67 (115)
.++-++|..||.||.=
T Consensus 26 Y~~qF~~~LG~~P~PG 41 (131)
T d3ctaa2 26 YIIQFQEKLGIIPYLG 41 (131)
T ss_dssp CHHHHHHHSCSCCCC-
T ss_pred HHHHHHHHhCCCCCCC
Confidence 4678899999999964
No 4
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=16.55 E-value=29 Score=19.82 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=13.7
Q ss_pred cCCcchhHHHHHHhhhh
Q psy9086 44 IQTKNTKFTRDLVREVC 60 (115)
Q Consensus 44 ~~tk~~k~Vr~vIrEV~ 60 (115)
.-+-|+.++||+||+..
T Consensus 26 gy~nRSEaIRdliR~~l 42 (50)
T d2bj7a1 26 GYENRSEAIRDLIRDFI 42 (50)
T ss_dssp TCSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 35678999999999853
No 5
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.29 E-value=34 Score=19.30 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=14.2
Q ss_pred ccCCcchhHHHHHHhhhh
Q psy9086 43 GIQTKNTKFTRDLVREVC 60 (115)
Q Consensus 43 g~~tk~~k~Vr~vIrEV~ 60 (115)
+.-+-|+.+|||+||+..
T Consensus 23 ~gy~nRSEaIRdliR~~l 40 (48)
T d2hzaa1 23 RGYNNRSEAIRDILRSAL 40 (48)
T ss_dssp TTCCSHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHH
Confidence 345678999999999853
No 6
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=16.26 E-value=27 Score=21.32 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=16.6
Q ss_pred hhHHHHHHhhh-hcCchhHHHHHHHh
Q psy9086 49 TKFTRDLVREV-CGHAPYEKRAMELL 73 (115)
Q Consensus 49 ~k~Vr~vIrEV-~GfaPYEkr~mELL 73 (115)
..-++++|+++ -||+|= .++.||
T Consensus 59 ~~~a~~iI~aI~rGf~Pe--~a~~ll 82 (84)
T d1tuaa1 59 LMKAAEVVKAISLGFPPE--KAFRLL 82 (84)
T ss_dssp HHHHHHHHHHHHHTCCHH--HHGGGG
T ss_pred HHHHHHHHHHHhCCCChH--HHHHhc
Confidence 44689999999 499994 345554
No 7
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk {Methanococcus jannaschii [TaxId: 2190]}
Probab=15.70 E-value=24 Score=23.68 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=13.1
Q ss_pred HHHHHhhhhcCchhH
Q psy9086 52 TRDLVREVCGHAPYE 66 (115)
Q Consensus 52 Vr~vIrEV~GfaPYE 66 (115)
.++-++|..||.||.
T Consensus 26 Y~~qF~~~LG~~P~P 40 (131)
T d2vbua1 26 YKEIFKKILGFEPYE 40 (131)
T ss_dssp HHHHHHHHHSSCCCS
T ss_pred HHHHHHHHhCCCCCC
Confidence 578899999999994
No 8
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.00 E-value=74 Score=22.90 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=33.0
Q ss_pred HHHHHhhhhcCchhHHHHHHHhhhchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy9086 52 TRDLVREVCGHAPYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQ 108 (115)
Q Consensus 52 Vr~vIrEV~GfaPYEkr~mELLKvskdKrALKF~KKRLGth~RAKrKreeL~~vl~~ 108 (115)
++++|+|.+ ++=.++.+..+.|-..+++=.|.--.-+..+.+|..|+.+
T Consensus 111 i~~lik~qA--------V~vCmekg~fk~A~eilkr~f~~~~~~~~lr~~L~~iI~~ 159 (204)
T d3bqoa1 111 IQNLIKIQA--------IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 159 (204)
T ss_dssp HHHHHHHHH--------HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHHHH--------HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Confidence 566666554 5556678999999999998667666666778888887753
No 9
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=13.51 E-value=91 Score=21.63 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=20.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHH
Q psy9086 79 KRALKFLKRRLGTHIRAKRKREELS 103 (115)
Q Consensus 79 KrALKF~KKRLGth~RAKrKreeL~ 103 (115)
+.||..+=++|.+|.+-++|.++..
T Consensus 135 rlAl~~~~R~L~~~l~kk~k~~~~~ 159 (164)
T d2hkja2 135 KNALMEVARKLKQYLSEKRKEQEAK 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999998777766653
No 10
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=12.20 E-value=67 Score=20.43 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=20.0
Q ss_pred HHHHHHhhhhcC---chhHHHHHHHhhhc
Q psy9086 51 FTRDLVREVCGH---APYEKRAMELLKVS 76 (115)
Q Consensus 51 ~Vr~vIrEV~Gf---aPYEkr~mELLKvs 76 (115)
-++++++|..|| -||-..+++.+-.+
T Consensus 12 ~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g 40 (206)
T d1oywa2 12 GAKQVLQETFGYQQFRPGQEEIIDTVLSG 40 (206)
T ss_dssp HHHHHHHHTTCCSSCCTTHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcC
Confidence 378999999875 58888888876544
Done!