RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9086
         (115 letters)



>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
           Sulfolobus shibatae [TaxId: 2286]}
          Length = 164

 Score = 27.4 bits (61), Expect = 0.30
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 79  KRALKFLKRRLGTHIRAKRKREEL 102
           K AL  + R+L  ++  KRK +E 
Sbjct: 135 KNALMEVARKLKQYLSEKRKEQEA 158


>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family)
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 255

 Score = 24.7 bits (53), Expect = 3.1
 Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 72  LLKVSKDKRALKFLKRRL-GTHIRAKRKREELSNILTQM 109
           ++++   K A K L+  +          ++E+  I T +
Sbjct: 216 IVELYHSKEAQKALQEDVKDGEKPVNLSKDEIKAIETSL 254


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 385,426
Number of extensions: 15366
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 13
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (21.9 bits)