BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9087
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/109 (63%), Positives = 83/109 (76%), Gaps = 3/109 (2%)
Query: 60 LFHLLAMFSSAP-LSPYSQAELGSPDSTETVENYEALLSLAERLGEAKPRGLNRYEIESI 118
L ++L+M P + P EL D VENYEALL+LAERLGEAKPRGL + +IE +
Sbjct: 392 LPYVLSMLPVPPAVGPTFSFELDVEDGE--VENYEALLNLAERLGEAKPRGLTKADIEQL 449
Query: 119 PSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
PS++FN S HQS+QT CVVCMCDFE+ Q+LR LPC+HEFHAKCVDKWLK
Sbjct: 450 PSYRFNPSNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK 498
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 139 bits (350), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/109 (62%), Positives = 83/109 (76%), Gaps = 3/109 (2%)
Query: 60 LFHLLAMFSSAP-LSPYSQAELGSPDSTETVENYEALLSLAERLGEAKPRGLNRYEIESI 118
L ++L+M P + P EL D VENYEALL+LAERLGEAKPRGL + +IE +
Sbjct: 389 LPYVLSMLPVPPAVGPTFSFELDVEDGE--VENYEALLNLAERLGEAKPRGLTKADIEQL 446
Query: 119 PSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
PS++FN + HQS+QT CVVCMCDFE+ Q+LR LPC+HEFHAKCVDKWLK
Sbjct: 447 PSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK 495
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 70/84 (83%), Gaps = 1/84 (1%)
Query: 84 DSTETVENYEALLSLAERLGEAKPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFE 143
D E +ENYEALL+LAERLGEAKPRGL + +IE +PS++FN HQS+QT CVVC DFE
Sbjct: 346 DDVE-MENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNLENHQSEQTLCVVCFSDFE 404
Query: 144 TSQVLRGLPCSHEFHAKCVDKWLK 167
+ Q+LR LPC+HEFHAKCVDKWLK
Sbjct: 405 SRQLLRVLPCNHEFHAKCVDKWLK 428
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 129 bits (325), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 75/104 (72%), Gaps = 3/104 (2%)
Query: 67 FSSAPLSPYSQAELGSPD---STETVENYEALLSLAERLGEAKPRGLNRYEIESIPSFKF 123
S P+SP + S D +ENYEALL+LAERLG+AKPRGL + +IE +PS++F
Sbjct: 227 LSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRF 286
Query: 124 NASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
N HQS+QT CVVC DFE Q+LR LPC+HEFHAKCVDKWLK
Sbjct: 287 NPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLK 330
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 76/108 (70%)
Query: 60 LFHLLAMFSSAPLSPYSQAELGSPDSTETVENYEALLSLAERLGEAKPRGLNRYEIESIP 119
L + L+M +P + L +ENYEALL+LAERLG+AKPRGL + +IE +P
Sbjct: 280 LPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLP 339
Query: 120 SFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
S++FN HQS+QT CVVC DFE Q+LR LPC+HEFHAKCVDKWLK
Sbjct: 340 SYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLK 387
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 74/105 (70%), Gaps = 3/105 (2%)
Query: 66 MFSSAPLSPYSQAELGSPD---STETVENYEALLSLAERLGEAKPRGLNRYEIESIPSFK 122
S P+SP + S D +ENYEALL+LAERLG+AKPRGL + +IE +PS++
Sbjct: 308 FLSMLPMSPTAMGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYR 367
Query: 123 FNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
FN HQS+QT CVVC DFE Q+LR LPC+HEFH KCVDKWLK
Sbjct: 368 FNPDSHQSEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLK 412
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 92 YEALLSLAERLGEAKPRGLNRYEIESIPSFKFNASKHQSD-QTSCVVCMCDFETSQVLRG 150
YE LL+L + +G + RGL+ I S+PS ++ +Q+ SCV+C D+E + L
Sbjct: 245 YEELLALGDIVG-TESRGLSADTIASLPSKRYKEGDNQNGTNESCVICRLDYEDDEDLIL 303
Query: 151 LPCSHEFHAKCVDKWLKI 168
LPC H +H++C++ WLKI
Sbjct: 304 LPCKHSYHSECINNWLKI 321
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 106 KPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDK 164
K G++R IES+P F+F A D C VC+ FE ++VLR LP C H FH +CVD
Sbjct: 117 KNSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDT 176
Query: 165 WL 166
WL
Sbjct: 177 WL 178
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 109 GLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWLK 167
GL++ IES+P F+F+A K C VC+ FE+ ++LR LP C H FH C+D+WL+
Sbjct: 97 GLDKTAIESLPLFRFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLE 156
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 109 GLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWLK 167
GL++ IES+P F+F+A K C VC+ FE ++LR LP C H FH C+D+WL+
Sbjct: 98 GLDKKAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLE 157
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 85 STETVE---NYEALLSLAERLGEAKPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCD 141
S+ET+ N E S +R+ GLN I+SI +K+ + D + C VC+ +
Sbjct: 90 SSETLNLNHNGEGFFSSTQRI-STNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSE 148
Query: 142 FETSQVLRGLP-CSHEFHAKCVDKWLK 167
FE ++ LR LP C+H FH C+D WLK
Sbjct: 149 FEENESLRLLPKCNHAFHLPCIDTWLK 175
>sp|Q9M0R4|ATL37_ARATH Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana
GN=ATL37 PE=3 SV=1
Length = 357
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Query: 108 RGLNRYEIESIPSFKFN---ASKHQSDQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVD 163
RG+++ IES P+F ++ A K + C +C+C+FE + LR +P CSH FHA C+D
Sbjct: 90 RGIDKDVIESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCID 149
Query: 164 KWL 166
+WL
Sbjct: 150 EWL 152
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 104 EAKPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVD 163
+ +PRGL + +I+++ + F + +C VC+ ++ LR LPCSHE+H C+D
Sbjct: 557 DDQPRGLTKEQIDNLSTRNFGENDALK---TCSVCITEYTEGNKLRKLPCSHEYHVHCID 613
Query: 164 KWL 166
+WL
Sbjct: 614 RWL 616
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 101 RLGEAKPRGLNRYEIESIPSFKFN---ASKHQSDQTSCVVCMCDFETSQVLRGLP-CSHE 156
R+ RGL+ IE+ P+F ++ A + C VC+C+FE + LR +P C H
Sbjct: 98 RIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHV 157
Query: 157 FHAKCVDKWL 166
FHA CVD WL
Sbjct: 158 FHADCVDVWL 167
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 104 EAKPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVD 163
+ +PRGL + +I+++ + F + +C VC+ ++ LR LPCSHE+H C+D
Sbjct: 540 DDQPRGLTKEQIDNLSTRNFGENDALK---TCSVCITEYTEGNKLRKLPCSHEYHIHCID 596
Query: 164 KWL 166
+WL
Sbjct: 597 RWL 599
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 59 GLFHLLAMFSSAPLSPYSQAELGSPDSTETVENYEALLSLAERLGEAKPRGLNRYEIESI 118
GL H+L F L+P ++ + +N AL ++L G+++ I+++
Sbjct: 58 GLLHILVKF---LLTPSRESR------EDYFDNVTALQGQLQQLFNLHDSGVDQSLIDTL 108
Query: 119 PSFKFNA-SKHQSDQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWL 166
P F + + + C VC+C+FET LR LP CSH FH +C+D WL
Sbjct: 109 PVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWL 158
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 104 EAKPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVD 163
E +PRGL + +I+++ F + +C VC+ ++ LR LPCSHE+H C+D
Sbjct: 518 EDQPRGLTKEQIDNLAMRSFGENDALK---TCSVCITEYTEGNKLRKLPCSHEYHVHCID 574
Query: 164 KWL 166
+WL
Sbjct: 575 RWL 577
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 108 RGLNRYEIESIPSFKFNASKHQS-------DQTSCVVCMCDFETSQVLRGLP-CSHEFHA 159
+GL + ++S+P F A++ S D T C +C+ DF + +R LP C H FH
Sbjct: 68 KGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHV 127
Query: 160 KCVDKWL 166
+C+DKWL
Sbjct: 128 ECIDKWL 134
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 108 RGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWL 166
RGL+ I+S+P F F+ H+ D C VC+ +FE S+ R LP C H FH C+D W
Sbjct: 93 RGLDPNVIKSLPVFTFSDETHK-DPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWF 151
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 103 GEAKPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLP-CSHEFHAKC 161
GE + RGL+ + +P + ++ + T C +C+ D +T ++ R LP C H FH C
Sbjct: 144 GELEARGLSGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVC 203
Query: 162 VDKWL 166
VDKWL
Sbjct: 204 VDKWL 208
>sp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2
SV=2
Length = 472
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 82 SPDSTETVENYEALLSLAERLGEAKPRGLNRYEIESIPSFKFNASKHQSDQ-TSCVVCMC 140
S D + +N AL ++L G+++ I+++P F + + + C VC+C
Sbjct: 80 SRDREDYFDNVTALQGQLQQLFHLHDSGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLC 139
Query: 141 DFETSQVLRGLP-CSHEFHAKCVDKWL 166
+FET LR LP CSH FH C+D WL
Sbjct: 140 EFETEDKLRLLPKCSHAFHMDCIDTWL 166
>sp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana
GN=ATL36 PE=3 SV=1
Length = 345
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 108 RGLNRYEIESIPSFKFNASKH---QSDQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVD 163
RGL + IES P+F ++ K C +C+ +FE + LR +P CSH FHA C+D
Sbjct: 93 RGLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCID 152
Query: 164 KWL 166
WL
Sbjct: 153 VWL 155
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 104 EAKPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVD 163
+ +PRGL + +I+++ + + + +C VC+ ++ LR LPCSHE+H C+D
Sbjct: 675 DDQPRGLTKEQIDNLSTRNYGENDALK---TCSVCITEYTEGNKLRKLPCSHEYHIHCID 731
Query: 164 KWL 166
+WL
Sbjct: 732 RWL 734
>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2
SV=1
Length = 217
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 109 GLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWLK 167
GL+ I+S P ++ +K + + C +C+ D++ +LR LP C+H FH KC+D WL+
Sbjct: 121 GLDEDTIQSYPKILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLR 180
Query: 168 I 168
+
Sbjct: 181 L 181
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 104 EAKPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVD 163
+ +PRGL + +I+++ F + +C VC+ ++ LR LPCSHE+H C+D
Sbjct: 542 DDQPRGLTKEQIDNLAMRSFGENDALK---TCSVCITEYTEGNKLRKLPCSHEYHVHCID 598
Query: 164 KWL 166
+WL
Sbjct: 599 RWL 601
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 98 LAERLGEAKPRGLNRYEIESIPSFKFNASKHQSDQTS-CVVCMCDFETSQVLRGLPCSHE 156
L E + + RGL + +I+++ + + + S+ C VC+ D+ T LR LPC HE
Sbjct: 594 LNESDDDDRIRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHE 653
Query: 157 FHAKCVDKWL 166
FH C+D+WL
Sbjct: 654 FHIHCIDRWL 663
>sp|Q9FL42|ATL69_ARATH Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana
GN=ATL69 PE=3 SV=1
Length = 159
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 93 EALLSLAERLGEAKPRGLNRYEIESIPSFKFNASKH--QSDQTSCVVCMCDFETSQVLRG 150
+ +L L E K GL+R IES P S+ + + C +C+CD+E + +R
Sbjct: 51 DVVLDLPSPAAEVK-LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRC 109
Query: 151 LP-CSHEFHAKCVDKWLK 167
+P C+H FH CVD+WL+
Sbjct: 110 IPECNHCFHTDCVDEWLR 127
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 108 RGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWL 166
RGL+ + S+P +++ + Q ++ CV+C+ DFE + ++ +P C H FH CVD WL
Sbjct: 114 RGLDSQAVRSLPVYRYTKAAKQRNE-DCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWL 172
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 77 QAELGSPDSTETVENYEALLSLAERLGEAKPRGLNRYEIESIPSFKFNASKH---QSDQT 133
Q+++G+ DST +E L S+ + G +GL ++ IP K + ++
Sbjct: 138 QSQMGAVDST-----FEELSSIFDTGGS---KGLTGDLVDKIPKIKITGKNNLDASGNKD 189
Query: 134 SCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWL 166
SC VC+ DF+ + +R LP C H FH C+D WL
Sbjct: 190 SCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWL 223
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 100 ERLGEAKPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLP-CSHEFH 158
++L GL++ I+++P F + K + C VC+C+F LR LP CSH FH
Sbjct: 109 QQLFHLHDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFH 168
Query: 159 AKCVDKWL 166
C+D WL
Sbjct: 169 IDCIDTWL 176
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 115 IESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIGT 170
I+ +P F+ A D C++C+ +F +RGLPC+H FH +C+D+WL++
Sbjct: 217 IQELPKFRLKAVP--DDCGECLICLEEFHIGHEVRGLPCAHNFHVECIDQWLRLNV 270
>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2
Length = 438
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 101 RLGEAKPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAK 160
RLG+A + +++ +I +I K + +SD +C VC+ ++ + V+R LPC H FH
Sbjct: 247 RLGDAAKKAISKLQIRTI---KKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKS 303
Query: 161 CVDKWL 166
CVD WL
Sbjct: 304 CVDPWL 309
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 109 GLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWL 166
GL+R I SI F + D T C VC+ +FE + LR LP CSH FH C+D WL
Sbjct: 109 GLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWL 167
>sp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2
SV=1
Length = 132
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 107 PRGLNRYEIESIPSFKFNASKHQS---DQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCV 162
PRGL+ I+S PSF + ++ + CVVC+ +F+ + LR +P C H FHA CV
Sbjct: 54 PRGLDAEAIKSFPSFVYTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCV 113
Query: 163 DKWL 166
D WL
Sbjct: 114 DIWL 117
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 6/81 (7%)
Query: 92 YEALLSLAERLGEAKPRGLNRYEIESIPS--FKFNA--SKHQSDQTSCVVCMCDFETSQV 147
YE L+ L E +G + RGL++ IE++P+ +KF + S+ ++ + CV+C ++ +
Sbjct: 152 YEELVELGEAVG-TESRGLSQELIETLPTKKYKFGSIFSRKRAGE-RCVICQLKYKIGER 209
Query: 148 LRGLPCSHEFHAKCVDKWLKI 168
LPC H +H++C+ KWL I
Sbjct: 210 QMNLPCKHVYHSECISKWLSI 230
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 105 AKPRGLNRYEIESIPSFKFNASKHQS---DQTSCVVCMCDFETSQVLRGLP-CSHEFHAK 160
A RGL+ +E+ P+F ++ K Q + C +C+ +FE + LR LP C H FH
Sbjct: 95 AAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPH 154
Query: 161 CVDKWLK 167
C+D WL+
Sbjct: 155 CIDAWLE 161
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 82 SPDSTETVENYEALLSLAERLGEAKPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCD 141
S D N A L RL A GL + ++ IP + + T C++C+ D
Sbjct: 66 SDDQVSNASNANANLG---RLAAAT--GLKKQALKQIPVGLYGSGIIDMKATECLICLGD 120
Query: 142 FETSQVLRGLP-CSHEFHAKCVDKWL 166
FE + +R LP C+H FH +C+D WL
Sbjct: 121 FEDGEKVRVLPKCNHGFHVRCIDTWL 146
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 85 STETVENYEALLSLAERLGEAKPRGLNRYEIESIPSFKFNASKH---QSDQTSCVVCMCD 141
S++T E ++ R RGL + I S PSF ++ K C +C+ +
Sbjct: 79 SSDTEEGGHGEVAFTRRTS----RGLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNE 134
Query: 142 FETSQVLRGLP-CSHEFHAKCVDKWL 166
FE + LR +P CSH FHA C+D WL
Sbjct: 135 FEDEETLRLMPPCSHAFHASCIDVWL 160
>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2
SV=1
Length = 375
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 15/79 (18%)
Query: 104 EAKPRGLNRYEIESIPSFKFNASKHQSD--------------QTSCVVCMCDFETSQVLR 149
E + RGL+ I +IP FKF Q+D C VC+ +F+ + LR
Sbjct: 93 ELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLR 152
Query: 150 GLP-CSHEFHAKCVDKWLK 167
+P CSH FH C+D WL+
Sbjct: 153 IIPNCSHLFHIDCIDVWLQ 171
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Query: 105 AKPRGLNRYEIESIPSFKFNASKHQS-------------------------DQTSCVVCM 139
A G ++ +I+ +P F+F + + + C +C+
Sbjct: 283 ADQEGASKNDIDQMPKFRFTKTGNVEKLSGKARGIMTECGTDSPIERSLSPEDAECCICL 342
Query: 140 CDFETSQVLRGLPCSHEFHAKCVDKWLKIGT 170
C++E LR LPC+H FH C+DKWL I +
Sbjct: 343 CEYEDGVELRELPCNHHFHCTCIDKWLHINS 373
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 103 GEAKP-RGLNRYEIESIPSFKFNASKHQSD-QTSCVVCMCDFETSQVLRGLPCSHEFHAK 160
G+ P RGL + +I+++ + + S+ C VC+ D+ LR LPC HEFH
Sbjct: 580 GDDDPIRGLTKEQIDNLSTRSYEQDGVDSELGKVCSVCISDYVAGNKLRQLPCLHEFHIH 639
Query: 161 CVDKWL 166
C+D+WL
Sbjct: 640 CIDRWL 645
>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN=Rnf150 PE=2 SV=2
Length = 437
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 101 RLGEAKPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAK 160
RLG+A + +++ ++ +I + + +SD +C VC+ ++ + V+R LPC H FH
Sbjct: 246 RLGDAAKKAISKLQVRTI---RKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKS 302
Query: 161 CVDKWL 166
CVD WL
Sbjct: 303 CVDPWL 308
>sp|O82353|ATL67_ARATH RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2
SV=1
Length = 214
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 109 GLNRYEIESIPSFKF--NASKHQSD------QTSCVVCMCDFETSQVLRGLP-CSHEFHA 159
GL++ I S P F F + S SD T+C +C+C+++ +++LR +P C H FH
Sbjct: 104 GLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHL 163
Query: 160 KCVDKWLKI 168
C+D WLK+
Sbjct: 164 CCLDAWLKL 172
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 30/94 (31%)
Query: 105 AKPRGLNRYEIESIPSFKF----NASKHQSDQTS-------------------------- 134
A G ++ +IE + FKF +A+KH +D+
Sbjct: 293 ADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDAE 352
Query: 135 CVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168
C +C+ +E LR LPC H FH CVDKWL I
Sbjct: 353 CCICLSAYEDGTELRELPCGHHFHCSCVDKWLYI 386
>sp|O64762|ATL38_ARATH RING-H2 finger protein ATL38 OS=Arabidopsis thaliana GN=ATL38 PE=2
SV=1
Length = 302
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 108 RGLNRYEIESIPSFKFNASKHQS---DQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVD 163
RGL+ I S P+F ++ K + C VC+C+FE + LR +P C H FHA CV
Sbjct: 66 RGLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVS 125
Query: 164 KWL 166
WL
Sbjct: 126 VWL 128
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 94 ALLSLAERLGEAKPRGLNRY--------EIESIPSFKFNASKHQSDQTSCVVCMCDFETS 145
L L ++L E P NRY I+++P+ K +S+ C VCM +FE
Sbjct: 170 GLEQLIQQLAENDP---NRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDG 226
Query: 146 QVLRGLPCSHEFHAKCVDKWLKI 168
++ +PC H FH C+ WL++
Sbjct: 227 SDVKQMPCKHVFHQDCLLPWLEL 249
>sp|Q8SV35|Y733_ENCCU Uncharacterized RING finger protein ECU07_0330 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU07_0330 PE=4 SV=1
Length = 314
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 22/32 (68%)
Query: 135 CVVCMCDFETSQVLRGLPCSHEFHAKCVDKWL 166
C +CM +F +Q LR LPC H FH CVDKWL
Sbjct: 269 CAICMSNFIKNQRLRVLPCDHRFHVGCVDKWL 300
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 106 KPRGLNRYEIESIPSFKFNASKH---QSDQTSCVVCMCDFETSQVLRGLP-CSHEFHAKC 161
+ RGL+ IE+ P+F+++ K + C VC+ +FE + LR +P C H FH C
Sbjct: 112 QARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGC 171
Query: 162 VDKWLK 167
+D WL+
Sbjct: 172 IDAWLR 177
>sp|Q566M8|RN150_DANRE RING finger protein 150 OS=Danio rerio GN=rnf150 PE=2 SV=1
Length = 419
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 101 RLGEAKPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAK 160
RLG+A + +++ ++ +I + + +SD +C VC+ ++ + V+R LPC H FH
Sbjct: 236 RLGDAAKKAISQLQVRTI---RKGDQETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKC 292
Query: 161 CVDKWL 166
CVD WL
Sbjct: 293 CVDPWL 298
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 108 RGLNRYEIESIPSFKFNASKHQS---DQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVD 163
RGL+ IE+ P+F ++ K Q C +C+ +FE + LR LP C H FH C+
Sbjct: 94 RGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIG 153
Query: 164 KWLK 167
WL+
Sbjct: 154 AWLQ 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,553,216
Number of Sequences: 539616
Number of extensions: 2357483
Number of successful extensions: 5706
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 5381
Number of HSP's gapped (non-prelim): 340
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)