Query psy9087
Match_columns 170
No_of_seqs 277 out of 1471
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 18:31:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628|consensus 99.6 1.1E-16 2.3E-21 135.8 3.8 62 108-169 205-266 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 2.1E-14 4.5E-19 87.7 2.5 38 133-170 1-38 (44)
3 PF12678 zf-rbx1: RING-H2 zinc 99.1 6.2E-11 1.3E-15 80.1 3.6 39 132-170 19-67 (73)
4 COG5540 RING-finger-containing 99.1 3.9E-11 8.4E-16 99.8 2.6 38 131-168 322-359 (374)
5 PHA02929 N1R/p28-like protein; 98.9 7.7E-10 1.7E-14 90.2 4.1 62 108-169 148-216 (238)
6 PF13923 zf-C3HC4_2: Zinc fing 98.7 1.4E-08 3E-13 60.3 2.7 33 135-169 1-33 (39)
7 COG5243 HRD1 HRD ubiquitin lig 98.7 1.1E-08 2.5E-13 87.3 2.4 41 129-169 284-334 (491)
8 cd00162 RING RING-finger (Real 98.6 2.4E-08 5.2E-13 59.4 2.8 33 134-168 1-33 (45)
9 smart00184 RING Ring finger. E 98.6 5.2E-08 1.1E-12 55.9 2.9 30 135-167 1-30 (39)
10 PF00097 zf-C3HC4: Zinc finger 98.5 6.9E-08 1.5E-12 57.5 1.7 32 135-168 1-32 (41)
11 KOG0802|consensus 98.4 5.9E-08 1.3E-12 87.7 1.3 39 131-169 290-330 (543)
12 PF12861 zf-Apc11: Anaphase-pr 98.4 1.7E-07 3.6E-12 64.9 2.6 38 132-169 21-68 (85)
13 PF13445 zf-RING_UBOX: RING-ty 98.4 2.9E-07 6.3E-12 56.0 3.1 34 135-169 1-35 (43)
14 smart00744 RINGv The RING-vari 98.3 9.3E-07 2E-11 55.2 3.2 35 134-169 1-40 (49)
15 PF15227 zf-C3HC4_4: zinc fing 98.2 1.5E-06 3.2E-11 52.5 2.7 32 135-169 1-32 (42)
16 PF13920 zf-C3HC4_3: Zinc fing 98.1 2.3E-06 4.9E-11 53.3 2.9 35 132-169 2-37 (50)
17 PHA02926 zinc finger-like prot 98.1 2.6E-06 5.7E-11 68.6 3.1 39 130-168 168-212 (242)
18 PF14634 zf-RING_5: zinc-RING 98.0 3.4E-06 7.4E-11 51.2 2.5 33 134-166 1-33 (44)
19 KOG0801|consensus 98.0 1.2E-06 2.7E-11 67.3 0.4 41 119-159 164-204 (205)
20 COG5194 APC11 Component of SCF 98.0 5E-06 1.1E-10 56.7 3.1 35 135-169 34-70 (88)
21 KOG1734|consensus 97.9 3.6E-06 7.8E-11 69.5 1.1 37 131-167 223-266 (328)
22 smart00504 Ubox Modified RING 97.8 3.3E-05 7.2E-10 49.7 3.7 34 133-169 2-35 (63)
23 KOG2930|consensus 97.7 2.1E-05 4.7E-10 56.1 1.9 40 131-170 45-98 (114)
24 KOG1493|consensus 97.7 1.1E-05 2.4E-10 54.5 0.2 38 132-169 20-67 (84)
25 PF11793 FANCL_C: FANCL C-term 97.6 2.7E-05 5.9E-10 52.1 1.6 37 132-168 2-43 (70)
26 KOG0317|consensus 97.5 6E-05 1.3E-09 62.7 2.6 35 132-169 239-273 (293)
27 KOG0823|consensus 97.5 7.2E-05 1.6E-09 60.5 2.8 38 129-169 44-81 (230)
28 PF05883 Baculo_RING: Baculovi 97.5 5.1E-05 1.1E-09 56.7 1.7 34 132-165 26-65 (134)
29 KOG0828|consensus 97.5 4E-05 8.6E-10 68.0 0.9 37 131-167 570-620 (636)
30 KOG0320|consensus 97.4 8.9E-05 1.9E-09 57.9 2.7 38 131-169 130-167 (187)
31 TIGR00599 rad18 DNA repair pro 97.3 0.00012 2.6E-09 64.0 2.5 36 131-169 25-60 (397)
32 PF10367 Vps39_2: Vacuolar sor 97.3 0.00015 3.2E-09 51.3 1.8 32 131-163 77-108 (109)
33 KOG0804|consensus 97.2 0.00012 2.7E-09 64.2 1.4 36 131-166 174-210 (493)
34 KOG4445|consensus 97.2 0.00022 4.9E-09 59.8 2.2 37 131-167 114-150 (368)
35 KOG0825|consensus 96.5 0.00053 1.1E-08 63.9 -0.9 37 132-168 123-159 (1134)
36 PF04564 U-box: U-box domain; 96.2 0.0035 7.5E-08 42.0 2.4 34 132-168 4-37 (73)
37 KOG1941|consensus 96.1 0.0022 4.7E-08 55.8 1.1 38 132-169 365-403 (518)
38 KOG1814|consensus 96.0 0.0036 7.8E-08 54.7 2.1 37 132-168 184-220 (445)
39 COG5574 PEX10 RING-finger-cont 96.0 0.004 8.7E-08 51.4 2.2 36 131-169 214-250 (271)
40 KOG2164|consensus 96.0 0.0045 9.7E-08 55.3 2.6 34 132-168 186-219 (513)
41 COG5219 Uncharacterized conser 95.9 0.0011 2.4E-08 63.1 -1.7 40 131-170 1468-1511(1525)
42 PF11789 zf-Nse: Zinc-finger o 95.7 0.0097 2.1E-07 38.2 2.5 36 132-169 11-46 (57)
43 KOG1039|consensus 95.4 0.0061 1.3E-07 52.5 1.1 36 131-166 160-200 (344)
44 PF12906 RINGv: RING-variant d 95.3 0.0093 2E-07 36.7 1.4 33 135-168 1-38 (47)
45 KOG1952|consensus 95.3 0.0085 1.8E-07 56.5 1.6 38 131-168 190-228 (950)
46 KOG2034|consensus 95.1 0.01 2.2E-07 56.2 1.7 34 131-165 816-849 (911)
47 KOG1428|consensus 95.1 0.015 3.2E-07 58.0 2.6 57 112-168 3465-3522(3738)
48 KOG0827|consensus 94.4 0.0045 9.7E-08 53.8 -2.4 37 132-168 196-233 (465)
49 KOG0287|consensus 94.1 0.021 4.5E-07 49.0 1.0 35 132-169 23-57 (442)
50 KOG3970|consensus 93.9 0.031 6.8E-07 45.5 1.6 35 132-167 50-84 (299)
51 PF14446 Prok-RING_1: Prokaryo 93.9 0.075 1.6E-06 33.8 3.0 32 132-163 5-37 (54)
52 PHA03096 p28-like protein; Pro 90.5 0.14 3.1E-06 43.1 1.5 36 133-168 179-219 (284)
53 smart00249 PHD PHD zinc finger 89.6 0.25 5.3E-06 28.8 1.7 30 134-163 1-30 (47)
54 KOG2879|consensus 89.3 0.24 5.2E-06 41.4 1.9 33 130-164 237-269 (298)
55 KOG0297|consensus 88.4 0.22 4.8E-06 43.6 1.3 36 131-168 20-55 (391)
56 COG5432 RAD18 RING-finger-cont 88.2 0.27 5.9E-06 41.6 1.6 35 132-169 25-59 (391)
57 KOG0978|consensus 87.8 0.17 3.7E-06 47.3 0.2 33 132-167 643-675 (698)
58 KOG4265|consensus 87.7 0.27 5.9E-06 42.3 1.4 29 132-163 290-319 (349)
59 KOG3268|consensus 87.4 0.42 9.2E-06 37.7 2.1 36 133-168 166-205 (234)
60 KOG0311|consensus 86.3 0.12 2.6E-06 44.5 -1.5 35 132-169 43-78 (381)
61 PF00628 PHD: PHD-finger; Int 86.0 0.41 8.9E-06 29.1 1.1 31 134-164 1-31 (51)
62 COG5152 Uncharacterized conser 86.0 0.34 7.3E-06 38.9 0.9 32 133-167 197-228 (259)
63 KOG0309|consensus 83.7 0.62 1.3E-05 44.1 1.7 38 132-169 1018-1064(1081)
64 KOG2066|consensus 82.3 0.6 1.3E-05 44.2 1.0 38 132-169 784-825 (846)
65 KOG1609|consensus 81.5 0.88 1.9E-05 37.7 1.7 37 132-168 78-120 (323)
66 KOG1815|consensus 81.0 1.6 3.4E-05 38.8 3.2 37 131-169 69-105 (444)
67 KOG1812|consensus 80.9 0.65 1.4E-05 40.7 0.7 37 132-168 146-183 (384)
68 KOG1785|consensus 80.5 0.71 1.5E-05 40.7 0.8 32 133-167 370-401 (563)
69 KOG4692|consensus 80.4 1.7 3.7E-05 37.8 3.0 41 127-170 417-457 (489)
70 KOG3039|consensus 78.4 1.6 3.5E-05 36.2 2.2 38 131-168 220-258 (303)
71 KOG1571|consensus 78.1 1.5 3.2E-05 38.0 2.0 23 131-156 304-326 (355)
72 KOG4159|consensus 77.8 1.4 3E-05 38.9 1.8 35 130-167 82-116 (398)
73 KOG3053|consensus 76.1 1.4 3.1E-05 36.6 1.3 39 131-169 19-63 (293)
74 PF08746 zf-RING-like: RING-li 74.5 1.9 4.1E-05 25.9 1.2 35 135-169 1-35 (43)
75 KOG1940|consensus 73.6 1.7 3.6E-05 36.5 1.1 34 133-166 159-193 (276)
76 PF14835 zf-RING_6: zf-RING of 72.6 1.6 3.4E-05 28.7 0.6 31 133-165 8-38 (65)
77 KOG2114|consensus 72.5 1.9 4.2E-05 41.2 1.4 29 133-163 841-869 (933)
78 PF13717 zinc_ribbon_4: zinc-r 71.6 1.7 3.7E-05 25.0 0.6 25 134-158 4-36 (36)
79 KOG2071|consensus 71.3 2.3 4.9E-05 39.1 1.5 35 130-164 511-555 (579)
80 PF04641 Rtf2: Rtf2 RING-finge 68.3 4.9 0.00011 33.1 2.8 34 131-164 112-146 (260)
81 PF13832 zf-HC5HC2H_2: PHD-zin 68.3 5.7 0.00012 28.0 2.8 31 132-164 55-87 (110)
82 KOG1729|consensus 68.0 0.72 1.6E-05 38.9 -2.2 37 133-169 215-251 (288)
83 KOG1002|consensus 66.0 3.8 8.3E-05 37.6 1.8 34 131-167 535-568 (791)
84 KOG2932|consensus 64.0 3.2 6.9E-05 35.5 0.9 28 134-163 92-119 (389)
85 PF07649 C1_3: C1-like domain; 62.9 6 0.00013 21.5 1.6 29 134-162 2-30 (30)
86 KOG0825|consensus 62.5 6.4 0.00014 37.8 2.6 38 131-168 95-136 (1134)
87 smart00132 LIM Zinc-binding do 62.0 5.5 0.00012 21.9 1.4 28 134-162 1-28 (39)
88 PF14570 zf-RING_4: RING/Ubox 57.5 7.1 0.00015 24.1 1.4 29 135-164 1-31 (48)
89 PF13719 zinc_ribbon_5: zinc-r 56.7 6.7 0.00015 22.6 1.2 25 134-158 4-36 (37)
90 KOG1001|consensus 55.0 7.5 0.00016 36.6 1.8 31 133-167 455-485 (674)
91 KOG0826|consensus 52.7 15 0.00032 31.8 3.0 39 130-170 298-336 (357)
92 PF13901 DUF4206: Domain of un 51.0 12 0.00026 29.8 2.1 33 131-163 151-188 (202)
93 KOG0269|consensus 50.7 10 0.00022 36.2 1.9 37 133-170 780-816 (839)
94 PF10571 UPF0547: Uncharacteri 50.3 9.2 0.0002 20.4 1.0 23 134-158 2-25 (26)
95 KOG1812|consensus 47.6 8.7 0.00019 33.7 0.9 38 132-169 306-345 (384)
96 KOG4275|consensus 47.2 7.7 0.00017 33.0 0.5 22 132-156 300-321 (350)
97 KOG4172|consensus 46.7 4.9 0.00011 25.7 -0.6 29 132-163 7-36 (62)
98 COG5236 Uncharacterized conser 45.9 13 0.00029 32.4 1.8 35 127-164 56-90 (493)
99 KOG1829|consensus 45.6 6.8 0.00015 36.2 -0.0 34 131-164 510-548 (580)
100 KOG1813|consensus 42.5 9.9 0.00021 32.3 0.4 33 133-168 242-274 (313)
101 PF13771 zf-HC5HC2H: PHD-like 39.5 21 0.00045 24.0 1.7 31 132-164 36-68 (90)
102 PF06844 DUF1244: Protein of u 38.8 20 0.00044 23.6 1.4 13 156-168 11-23 (68)
103 PF00412 LIM: LIM domain; Int 36.4 22 0.00047 21.6 1.3 27 135-162 1-27 (58)
104 PF14447 Prok-RING_4: Prokaryo 35.7 12 0.00026 23.8 -0.0 21 144-164 16-36 (55)
105 COG2824 PhnA Uncharacterized Z 35.4 24 0.00052 25.5 1.5 25 134-158 5-31 (112)
106 PF12088 DUF3565: Protein of u 34.2 29 0.00063 22.5 1.5 18 143-160 7-24 (61)
107 PF01363 FYVE: FYVE zinc finge 33.8 19 0.00041 23.1 0.7 33 131-163 8-41 (69)
108 COG4847 Uncharacterized protei 33.8 43 0.00094 23.7 2.5 34 132-166 6-39 (103)
109 KOG0298|consensus 33.0 12 0.00026 37.7 -0.5 36 132-169 1153-1188(1394)
110 PF15353 HECA: Headcase protei 30.9 33 0.00071 24.8 1.5 15 152-166 39-53 (107)
111 PF00130 C1_1: Phorbol esters/ 29.2 33 0.00072 20.6 1.2 33 132-164 11-45 (53)
112 PF00645 zf-PARP: Poly(ADP-rib 29.1 38 0.00082 22.5 1.6 37 132-168 7-52 (82)
113 KOG3039|consensus 28.9 34 0.00074 28.5 1.5 34 132-168 43-76 (303)
114 smart00109 C1 Protein kinase C 28.5 51 0.0011 18.9 1.9 33 132-164 11-44 (49)
115 KOG4323|consensus 27.7 52 0.0011 29.7 2.6 33 132-164 168-202 (464)
116 PRK15351 type III secretion sy 27.5 74 0.0016 23.0 2.9 77 86-168 24-104 (124)
117 PF07282 OrfB_Zn_ribbon: Putat 26.6 1.2E+02 0.0026 19.2 3.6 31 132-162 28-61 (69)
118 TIGR00686 phnA alkylphosphonat 25.9 43 0.00094 24.2 1.4 25 134-158 4-30 (109)
119 smart00064 FYVE Protein presen 25.2 65 0.0014 20.4 2.1 35 132-166 10-45 (68)
120 PF03107 C1_2: C1 domain; Int 25.0 47 0.001 17.9 1.2 29 134-162 2-30 (30)
121 PRK10220 hypothetical protein; 25.0 51 0.0011 23.9 1.6 25 134-158 5-31 (111)
122 KOG2817|consensus 24.9 66 0.0014 28.4 2.6 36 132-167 334-369 (394)
123 cd00065 FYVE FYVE domain; Zinc 24.6 60 0.0013 19.7 1.8 33 133-165 3-36 (57)
124 KOG3005|consensus 24.2 26 0.00057 29.4 0.1 33 132-164 182-218 (276)
125 KOG3352|consensus 23.9 40 0.00086 25.9 1.0 26 132-158 111-144 (153)
126 KOG1815|consensus 23.9 23 0.00051 31.4 -0.3 36 133-168 227-267 (444)
127 cd00029 C1 Protein kinase C co 23.2 48 0.001 19.3 1.1 33 132-164 11-45 (50)
128 PF07227 DUF1423: Protein of u 23.2 57 0.0012 29.3 2.0 31 132-163 128-162 (446)
129 PF10913 DUF2706: Protein of u 21.8 25 0.00055 22.1 -0.3 11 3-13 14-24 (60)
130 PF07975 C1_4: TFIIH C1-like d 21.7 71 0.0015 19.9 1.7 27 135-161 2-35 (51)
131 PF10071 DUF2310: Zn-ribbon-co 20.5 75 0.0016 26.5 2.0 27 130-161 218-244 (258)
132 KOG3799|consensus 20.5 46 0.00099 25.2 0.7 16 130-145 63-79 (169)
No 1
>KOG4628|consensus
Probab=99.64 E-value=1.1e-16 Score=135.85 Aligned_cols=62 Identities=32% Similarity=0.777 Sum_probs=55.0
Q ss_pred CCCCHHHHHcCCceEeccCCCCCCCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 108 RGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 108 ~gls~~~i~~lp~~~~~~~~~~~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
..+.+..+.++|...|.........+.|+||||+|+.||+++.|||+|.||..||++||.++
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~ 266 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT 266 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhc
Confidence 56889999999999998765443346999999999999999999999999999999999875
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.47 E-value=2.1e-14 Score=87.72 Aligned_cols=38 Identities=37% Similarity=0.990 Sum_probs=35.0
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhHHHHHHhCC
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIGT 170 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~~ 170 (170)
++|+||+++|..++.+..|+|||.||.+||..||++++
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~ 38 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN 38 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC
Confidence 47999999999999999999999999999999998763
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.11 E-value=6.2e-11 Score=80.11 Aligned_cols=39 Identities=31% Similarity=0.751 Sum_probs=30.8
Q ss_pred CCCCccccccccCC----------CeeeEecCCCcchHHhHHHHHHhCC
Q psy9087 132 QTSCVVCMCDFETS----------QVLRGLPCSHEFHAKCVDKWLKIGT 170 (170)
Q Consensus 132 ~~~C~ICle~f~~g----------~~v~~LPC~H~FH~~CI~~WL~~~~ 170 (170)
++.|+||+++|.+. -.+...+|||.||..||.+||+.++
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~ 67 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN 67 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC
Confidence 55699999999432 2355567999999999999998764
No 4
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.9e-11 Score=99.81 Aligned_cols=38 Identities=47% Similarity=1.038 Sum_probs=35.5
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
.+.+|+|||++|..+|.++.|||.|.||..||++||..
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~ 359 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG 359 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhh
Confidence 35789999999999999999999999999999999974
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.93 E-value=7.7e-10 Score=90.24 Aligned_cols=62 Identities=26% Similarity=0.509 Sum_probs=46.7
Q ss_pred CCCCHHHHHcCCceEeccCC--CCCCCCCCccccccccCCCe----eeEe-cCCCcchHHhHHHHHHhC
Q psy9087 108 RGLNRYEIESIPSFKFNASK--HQSDQTSCVVCMCDFETSQV----LRGL-PCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 108 ~gls~~~i~~lp~~~~~~~~--~~~~~~~C~ICle~f~~g~~----v~~L-PC~H~FH~~CI~~WL~~~ 169 (170)
.+.++..++++|.+..+-+. ....+.+|+||++.+.+.+. +..+ +|+|.||.+||.+|++.+
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~ 216 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK 216 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC
Confidence 56689999999987654322 23346799999999876542 3344 599999999999999875
No 6
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.68 E-value=1.4e-08 Score=60.29 Aligned_cols=33 Identities=27% Similarity=0.835 Sum_probs=28.6
Q ss_pred CccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 135 CVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 135 C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
|+||++.+.+ .+..++|||.|..+||.+|++.+
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~ 33 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKN 33 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCc
Confidence 8999998776 66789999999999999999873
No 7
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.1e-08 Score=87.31 Aligned_cols=41 Identities=29% Similarity=0.869 Sum_probs=33.9
Q ss_pred CCCCCCCcccccc-ccCCC---------eeeEecCCCcchHHhHHHHHHhC
Q psy9087 129 QSDQTSCVVCMCD-FETSQ---------VLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 129 ~~~~~~C~ICle~-f~~g~---------~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
..++..|+|||++ |+.+. .-+.|||||+||.+|++.|++++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq 334 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ 334 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc
Confidence 3457799999999 55552 35789999999999999999875
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.63 E-value=2.4e-08 Score=59.36 Aligned_cols=33 Identities=42% Similarity=1.049 Sum_probs=28.1
Q ss_pred CCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
.|+||++.+ .+.+...+|||.||..|+..|++.
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~ 33 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKS 33 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHh
Confidence 599999998 445556669999999999999986
No 9
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.57 E-value=5.2e-08 Score=55.92 Aligned_cols=30 Identities=40% Similarity=0.990 Sum_probs=26.8
Q ss_pred CccccccccCCCeeeEecCCCcchHHhHHHHHH
Q psy9087 135 CVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 135 C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~ 167 (170)
|+||++. ......++|+|.||..|++.|++
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~ 30 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLK 30 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHH
Confidence 7899998 45677889999999999999997
No 10
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.47 E-value=6.9e-08 Score=57.52 Aligned_cols=32 Identities=41% Similarity=0.980 Sum_probs=28.2
Q ss_pred CccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 135 CVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 135 C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
|+||++.+.... ..++|||.|+..||..|++.
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~ 32 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLEN 32 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHH
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHh
Confidence 899999977644 68899999999999999984
No 11
>KOG0802|consensus
Probab=98.44 E-value=5.9e-08 Score=87.73 Aligned_cols=39 Identities=26% Similarity=0.857 Sum_probs=35.4
Q ss_pred CCCCCccccccccCCCe--eeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQV--LRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~--v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
.++.|+||+|++..+.. ...|||+|+||..|+..||++.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~ 330 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ 330 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh
Confidence 46799999999988876 8899999999999999999874
No 12
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.41 E-value=1.7e-07 Score=64.91 Aligned_cols=38 Identities=34% Similarity=0.732 Sum_probs=30.0
Q ss_pred CCCCccccccccC--------CCe--eeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFET--------SQV--LRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~--------g~~--v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
++.|.||...|+. |+. +..-.|+|.||..||.+||+.+
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~ 68 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQ 68 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccc
Confidence 6799999999984 443 2223499999999999999864
No 13
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.39 E-value=2.9e-07 Score=56.01 Aligned_cols=34 Identities=35% Similarity=0.695 Sum_probs=22.0
Q ss_pred CccccccccC-CCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 135 CVVCMCDFET-SQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 135 C~ICle~f~~-g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
|+||.| |.. .+.-..|+|||+|-.+||.+|++.+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 855 4456789999999999999999864
No 14
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.26 E-value=9.3e-07 Score=55.22 Aligned_cols=35 Identities=20% Similarity=0.549 Sum_probs=27.8
Q ss_pred CCccccccccCCCeeeEecCC-----CcchHHhHHHHHHhC
Q psy9087 134 SCVVCMCDFETSQVLRGLPCS-----HEFHAKCVDKWLKIG 169 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LPC~-----H~FH~~CI~~WL~~~ 169 (170)
.|.||++ ++.++.....||. |.||..|+.+||..+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~ 40 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINES 40 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHc
Confidence 4899999 4444455578985 999999999999765
No 15
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.17 E-value=1.5e-06 Score=52.53 Aligned_cols=32 Identities=31% Similarity=0.784 Sum_probs=26.5
Q ss_pred CccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 135 CVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 135 C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
|+||++-|.+ -..|+|||.|-..||..|.+..
T Consensus 1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~ 32 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEP 32 (42)
T ss_dssp ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCS
T ss_pred CCccchhhCC---ccccCCcCHHHHHHHHHHHHcc
Confidence 8999999876 5578999999999999998764
No 16
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.12 E-value=2.3e-06 Score=53.29 Aligned_cols=35 Identities=29% Similarity=0.683 Sum_probs=29.1
Q ss_pred CCCCccccccccCCCeeeEecCCCc-chHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHE-FHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~-FH~~CI~~WL~~~ 169 (170)
+..|.||++...+ +..+||||. |...|+..|++.+
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~ 37 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRK 37 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTT
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccC
Confidence 4689999998654 788999999 9999999998753
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.07 E-value=2.6e-06 Score=68.61 Aligned_cols=39 Identities=23% Similarity=0.607 Sum_probs=29.7
Q ss_pred CCCCCCccccccccCC----C-eeeEe-cCCCcchHHhHHHHHHh
Q psy9087 130 SDQTSCVVCMCDFETS----Q-VLRGL-PCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g----~-~v~~L-PC~H~FH~~CI~~WL~~ 168 (170)
+.+.+|+||||..-.. + .-..| +|+|.|+..||..|-+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~ 212 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRT 212 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHh
Confidence 3467999999986332 2 23455 49999999999999875
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.04 E-value=3.4e-06 Score=51.23 Aligned_cols=33 Identities=27% Similarity=0.638 Sum_probs=29.3
Q ss_pred CCccccccccCCCeeeEecCCCcchHHhHHHHH
Q psy9087 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWL 166 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL 166 (170)
.|.||+++|........++|||+|...||..+.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc
Confidence 499999999666678889999999999999876
No 19
>KOG0801|consensus
Probab=98.03 E-value=1.2e-06 Score=67.33 Aligned_cols=41 Identities=29% Similarity=0.754 Sum_probs=35.5
Q ss_pred CceEeccCCCCCCCCCCccccccccCCCeeeEecCCCcchH
Q psy9087 119 PSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHA 159 (170)
Q Consensus 119 p~~~~~~~~~~~~~~~C~ICle~f~~g~~v~~LPC~H~FH~ 159 (170)
|...|++.....+..+|+||||+++.|+.+..|||-.+||+
T Consensus 164 PrlsYNdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 164 PRLSYNDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cccccccchhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 56667766556677899999999999999999999999996
No 20
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.02 E-value=5e-06 Score=56.69 Aligned_cols=35 Identities=26% Similarity=0.691 Sum_probs=23.0
Q ss_pred CccccccccCCCee-eEe-cCCCcchHHhHHHHHHhC
Q psy9087 135 CVVCMCDFETSQVL-RGL-PCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 135 C~ICle~f~~g~~v-~~L-PC~H~FH~~CI~~WL~~~ 169 (170)
|+-|......|++. ... -|+|.||..||..||...
T Consensus 34 C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk 70 (88)
T COG5194 34 CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK 70 (88)
T ss_pred CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC
Confidence 33333333345543 233 399999999999999864
No 21
>KOG1734|consensus
Probab=97.90 E-value=3.6e-06 Score=69.49 Aligned_cols=37 Identities=30% Similarity=0.683 Sum_probs=31.5
Q ss_pred CCCCCccccccccCCC-------eeeEecCCCcchHHhHHHHHH
Q psy9087 131 DQTSCVVCMCDFETSQ-------VLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~-------~v~~LPC~H~FH~~CI~~WL~ 167 (170)
++..|+||-..+.... ..-.|.|+|+||..||..|--
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWci 266 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCI 266 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhee
Confidence 4679999999997655 577899999999999999953
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.76 E-value=3.3e-05 Score=49.68 Aligned_cols=34 Identities=18% Similarity=0.446 Sum_probs=28.9
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
..|+||++-+++- ..+||||+|...||..|++.+
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~ 35 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSH 35 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHC
Confidence 3699999998763 457999999999999999863
No 23
>KOG2930|consensus
Probab=97.68 E-value=2.1e-05 Score=56.09 Aligned_cols=40 Identities=25% Similarity=0.722 Sum_probs=28.2
Q ss_pred CCCCCccccccc-------------cCCCeeeEec-CCCcchHHhHHHHHHhCC
Q psy9087 131 DQTSCVVCMCDF-------------ETSQVLRGLP-CSHEFHAKCVDKWLKIGT 170 (170)
Q Consensus 131 ~~~~C~ICle~f-------------~~g~~v~~LP-C~H~FH~~CI~~WL~~~~ 170 (170)
..+.|+||-..+ ..++-+...- |+|.||..||..||+.++
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~ 98 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRN 98 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcC
Confidence 456899976443 1233344444 999999999999999864
No 24
>KOG1493|consensus
Probab=97.66 E-value=1.1e-05 Score=54.55 Aligned_cols=38 Identities=32% Similarity=0.726 Sum_probs=29.5
Q ss_pred CCCCccccccccC--------CCeee-Eec-CCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFET--------SQVLR-GLP-CSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~--------g~~v~-~LP-C~H~FH~~CI~~WL~~~ 169 (170)
+++|.||--.|+. ||..- .+- |.|.||..||.+||...
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~ 67 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTP 67 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCc
Confidence 4599999999975 44422 233 99999999999999764
No 25
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.61 E-value=2.7e-05 Score=52.08 Aligned_cols=37 Identities=19% Similarity=0.554 Sum_probs=17.1
Q ss_pred CCCCccccccccCCCee-e--Ee--cCCCcchHHhHHHHHHh
Q psy9087 132 QTSCVVCMCDFETSQVL-R--GL--PCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v-~--~L--PC~H~FH~~CI~~WL~~ 168 (170)
+..|.||.+.+.+++.+ . -- .|++.||..||..||..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~ 43 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLS 43 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHH
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHH
Confidence 35799999997633322 1 11 49999999999999975
No 26
>KOG0317|consensus
Probab=97.51 E-value=6e-05 Score=62.73 Aligned_cols=35 Identities=23% Similarity=0.626 Sum_probs=29.8
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
...|++|||.-.+ ...+||||+|.=.||..|+...
T Consensus 239 ~~kC~LCLe~~~~---pSaTpCGHiFCWsCI~~w~~ek 273 (293)
T KOG0317|consen 239 TRKCSLCLENRSN---PSATPCGHIFCWSCILEWCSEK 273 (293)
T ss_pred CCceEEEecCCCC---CCcCcCcchHHHHHHHHHHccc
Confidence 4689999997543 5688999999999999999764
No 27
>KOG0823|consensus
Probab=97.50 E-value=7.2e-05 Score=60.51 Aligned_cols=38 Identities=21% Similarity=0.484 Sum_probs=29.6
Q ss_pred CCCCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 129 QSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 129 ~~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
++...+|.|||+.- .|.| +..|||.|.=.||-+||..+
T Consensus 44 ~~~~FdCNICLd~a--kdPV-vTlCGHLFCWpClyqWl~~~ 81 (230)
T KOG0823|consen 44 DGGFFDCNICLDLA--KDPV-VTLCGHLFCWPCLYQWLQTR 81 (230)
T ss_pred CCCceeeeeecccc--CCCE-EeecccceehHHHHHHHhhc
Confidence 34467899999973 3334 55599999999999999864
No 28
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.48 E-value=5.1e-05 Score=56.74 Aligned_cols=34 Identities=18% Similarity=0.527 Sum_probs=30.4
Q ss_pred CCCCccccccccCCCeeeEecCC------CcchHHhHHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCS------HEFHAKCVDKW 165 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~------H~FH~~CI~~W 165 (170)
..+|.||++....++-|..++|| |.||.+|+.+|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 45899999999887778888887 99999999999
No 29
>KOG0828|consensus
Probab=97.45 E-value=4e-05 Score=67.99 Aligned_cols=37 Identities=30% Similarity=0.809 Sum_probs=29.0
Q ss_pred CCCCCccccccccCCC---e-----------eeEecCCCcchHHhHHHHHH
Q psy9087 131 DQTSCVVCMCDFETSQ---V-----------LRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~---~-----------v~~LPC~H~FH~~CI~~WL~ 167 (170)
+...|+|||.+.+.-. . -+..||.|+||..|+..|+.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd 620 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMD 620 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHh
Confidence 4578999999886522 1 22459999999999999997
No 30
>KOG0320|consensus
Probab=97.45 E-value=8.9e-05 Score=57.87 Aligned_cols=38 Identities=21% Similarity=0.490 Sum_probs=30.2
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
....|+|||+.|..... ....|||+|...||+.=|+..
T Consensus 130 ~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~ 167 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNT 167 (187)
T ss_pred cccCCCceecchhhccc-cccccchhHHHHHHHHHHHhC
Confidence 35789999999876544 346799999999999987753
No 31
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.33 E-value=0.00012 Score=63.96 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=29.8
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
....|+||++.|..- ..++|||.|+..||..||...
T Consensus 25 ~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~ 60 (397)
T TIGR00599 25 TSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQ 60 (397)
T ss_pred cccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCC
Confidence 356899999998542 368999999999999999753
No 32
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.25 E-value=0.00015 Score=51.29 Aligned_cols=32 Identities=31% Similarity=0.735 Sum_probs=27.4
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~ 163 (170)
++..|+||-..+.. ......||||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 35689999999877 567788999999999985
No 33
>KOG0804|consensus
Probab=97.23 E-value=0.00012 Score=64.17 Aligned_cols=36 Identities=31% Similarity=0.839 Sum_probs=29.5
Q ss_pred CCCCCccccccccCCC-eeeEecCCCcchHHhHHHHH
Q psy9087 131 DQTSCVVCMCDFETSQ-VLRGLPCSHEFHAKCVDKWL 166 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~-~v~~LPC~H~FH~~CI~~WL 166 (170)
+--+|+||||-+...- .+....|.|.||..|+.+|=
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~ 210 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW 210 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcc
Confidence 4568999999986654 35666799999999999994
No 34
>KOG4445|consensus
Probab=97.16 E-value=0.00022 Score=59.84 Aligned_cols=37 Identities=27% Similarity=0.749 Sum_probs=34.4
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~ 167 (170)
....|+|||-.|.+++...+.+|-|.||..|+..+|.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~ 150 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLT 150 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999885
No 35
>KOG0825|consensus
Probab=96.46 E-value=0.00053 Score=63.95 Aligned_cols=37 Identities=19% Similarity=0.463 Sum_probs=33.1
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
...|++|+..|.++......+|+|.||..||..|-+.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~ 159 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC 159 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh
Confidence 4679999999999888888999999999999999653
No 36
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.24 E-value=0.0035 Score=41.97 Aligned_cols=34 Identities=18% Similarity=0.412 Sum_probs=27.5
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
...|+|+.+-+.+ -..+||||.|-..||..||++
T Consensus 4 ~f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~ 37 (73)
T PF04564_consen 4 EFLCPITGELMRD---PVILPSGHTYERSAIERWLEQ 37 (73)
T ss_dssp GGB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCT
T ss_pred ccCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHc
Confidence 4579999998665 447899999999999999987
No 37
>KOG1941|consensus
Probab=96.13 E-value=0.0022 Score=55.83 Aligned_cols=38 Identities=32% Similarity=0.693 Sum_probs=32.7
Q ss_pred CCCCccccccccC-CCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFET-SQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~-g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+..|..|-|.+-. .+.+..|||.|+||..|+...|.++
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n 403 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENN 403 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhC
Confidence 5679999999955 4468889999999999999999776
No 38
>KOG1814|consensus
Probab=96.04 E-value=0.0036 Score=54.67 Aligned_cols=37 Identities=27% Similarity=0.708 Sum_probs=33.0
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
-..|.||+++.........|||+|+|...|+..++..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI 220 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence 4679999999887788999999999999999998764
No 39
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.004 Score=51.45 Aligned_cols=36 Identities=28% Similarity=0.626 Sum_probs=29.4
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHH-HHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK-WLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~-WL~~~ 169 (170)
.+..|+||++.-+. ...+||||+|.-.||.. |=+++
T Consensus 214 ~d~kC~lC~e~~~~---ps~t~CgHlFC~~Cl~~~~t~~k 250 (271)
T COG5574 214 ADYKCFLCLEEPEV---PSCTPCGHLFCLSCLLISWTKKK 250 (271)
T ss_pred cccceeeeecccCC---cccccccchhhHHHHHHHHHhhc
Confidence 36789999997544 56789999999999999 86653
No 40
>KOG2164|consensus
Probab=96.02 E-value=0.0045 Score=55.34 Aligned_cols=34 Identities=18% Similarity=0.547 Sum_probs=26.4
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
+..|+|||+....- + .+.|||+|...||...+..
T Consensus 186 ~~~CPICL~~~~~p--~-~t~CGHiFC~~CiLqy~~~ 219 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP--V-RTNCGHIFCGPCILQYWNY 219 (513)
T ss_pred CCcCCcccCCCCcc--c-ccccCceeeHHHHHHHHhh
Confidence 67899999985442 2 2339999999999998764
No 41
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.92 E-value=0.0011 Score=63.06 Aligned_cols=40 Identities=23% Similarity=0.709 Sum_probs=29.1
Q ss_pred CCCCCccccccccCCCe----eeEecCCCcchHHhHHHHHHhCC
Q psy9087 131 DQTSCVVCMCDFETSQV----LRGLPCSHEFHAKCVDKWLKIGT 170 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~----v~~LPC~H~FH~~CI~~WL~~~~ 170 (170)
..++|+||..-...-|. -+.-.|.|.||..|+-+|++.++
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~ 1511 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA 1511 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC
Confidence 45789999987653221 12223999999999999998753
No 42
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.69 E-value=0.0097 Score=38.18 Aligned_cols=36 Identities=17% Similarity=0.523 Sum_probs=26.6
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
...|+|.+..|+ +.|+...|||+|-.+.|..||+++
T Consensus 11 ~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~ 46 (57)
T PF11789_consen 11 SLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRN 46 (57)
T ss_dssp -SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTT
T ss_pred ccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhc
Confidence 568999999876 578888899999999999999543
No 43
>KOG1039|consensus
Probab=95.43 E-value=0.0061 Score=52.50 Aligned_cols=36 Identities=31% Similarity=0.813 Sum_probs=27.9
Q ss_pred CCCCCccccccccCCC----eeeEec-CCCcchHHhHHHHH
Q psy9087 131 DQTSCVVCMCDFETSQ----VLRGLP-CSHEFHAKCVDKWL 166 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~----~v~~LP-C~H~FH~~CI~~WL 166 (170)
.+.+|.|||+...+.- ....|| |.|.|-..||..|=
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr 200 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWR 200 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhh
Confidence 4679999999864433 123456 99999999999997
No 44
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.32 E-value=0.0093 Score=36.70 Aligned_cols=33 Identities=24% Similarity=0.735 Sum_probs=24.1
Q ss_pred CccccccccCCCeeeEecCC-----CcchHHhHHHHHHh
Q psy9087 135 CVVCMCDFETSQVLRGLPCS-----HEFHAKCVDKWLKI 168 (170)
Q Consensus 135 C~ICle~f~~g~~v~~LPC~-----H~FH~~CI~~WL~~ 168 (170)
|-||+++-+.++ .-..||+ -..|.+|+..|+..
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~ 38 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRE 38 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHH
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHh
Confidence 779999987766 4456764 37899999999985
No 45
>KOG1952|consensus
Probab=95.28 E-value=0.0085 Score=56.49 Aligned_cols=38 Identities=24% Similarity=0.721 Sum_probs=30.3
Q ss_pred CCCCCccccccccCCCeeeE-ecCCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFETSQVLRG-LPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~-LPC~H~FH~~CI~~WL~~ 168 (170)
+..+|.||.+.+...+.+=. -.|-|+||..||..|-++
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs 228 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARS 228 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHH
Confidence 45689999999877665433 339999999999999764
No 46
>KOG2034|consensus
Probab=95.12 E-value=0.01 Score=56.17 Aligned_cols=34 Identities=29% Similarity=0.574 Sum_probs=28.0
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKW 165 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~W 165 (170)
.++.|.+|.-.+... .-...||||.||.+||.+=
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred CccchHHhcchhhcC-cceeeeccchHHHHHHHHH
Confidence 367899999888664 5667899999999999763
No 47
>KOG1428|consensus
Probab=95.09 E-value=0.015 Score=57.98 Aligned_cols=57 Identities=25% Similarity=0.535 Sum_probs=43.2
Q ss_pred HHHHHcCCceEeccCC-CCCCCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 112 RYEIESIPSFKFNASK-HQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 112 ~~~i~~lp~~~~~~~~-~~~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
+.+-.-||-...+++. .+..++.|.||+.+--......+|.|+|+||..|...-|++
T Consensus 3465 kNEE~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~ 3522 (3738)
T KOG1428|consen 3465 KNEEHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLEN 3522 (3738)
T ss_pred cchhhcccccccChhhhhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHh
Confidence 4445567776655442 24457899999998877788899999999999999876653
No 48
>KOG0827|consensus
Probab=94.39 E-value=0.0045 Score=53.78 Aligned_cols=37 Identities=22% Similarity=0.564 Sum_probs=33.6
Q ss_pred CCCCccccccccCC-CeeeEecCCCcchHHhHHHHHHh
Q psy9087 132 QTSCVVCMCDFETS-QVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 132 ~~~C~ICle~f~~g-~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
...|+||.++|+.. +.+..+-|||.+|.+||.+||..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~ 233 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT 233 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Confidence 56899999999877 78889999999999999999975
No 49
>KOG0287|consensus
Probab=94.11 E-value=0.021 Score=49.04 Aligned_cols=35 Identities=31% Similarity=0.651 Sum_probs=30.1
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
-..|.||.|-|.. -...||+|.|..-||...|..+
T Consensus 23 lLRC~IC~eyf~i---p~itpCsHtfCSlCIR~~L~~~ 57 (442)
T KOG0287|consen 23 LLRCGICFEYFNI---PMITPCSHTFCSLCIRKFLSYK 57 (442)
T ss_pred HHHHhHHHHHhcC---ceeccccchHHHHHHHHHhccC
Confidence 4579999999876 4577899999999999999765
No 50
>KOG3970|consensus
Probab=93.91 E-value=0.031 Score=45.50 Aligned_cols=35 Identities=29% Similarity=0.671 Sum_probs=30.2
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~ 167 (170)
...|..|--.+..||.++ |-|-|+||-+|++.|-.
T Consensus 50 ~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA 84 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAA 84 (299)
T ss_pred CCCCceeCCccccCccee-ehhhhhHHHHHhhHHHh
Confidence 347999999999999875 56999999999999954
No 51
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=93.86 E-value=0.075 Score=33.76 Aligned_cols=32 Identities=25% Similarity=0.634 Sum_probs=28.2
Q ss_pred CCCCccccccccCCCeeeEec-CCCcchHHhHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LP-C~H~FH~~CI~ 163 (170)
...|.+|-+.|.+++.+.+=| ||=.||.+|-+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 568999999999888877777 99999999964
No 52
>PHA03096 p28-like protein; Provisional
Probab=90.48 E-value=0.14 Score=43.05 Aligned_cols=36 Identities=22% Similarity=0.576 Sum_probs=29.2
Q ss_pred CCCccccccccCCC----eeeEec-CCCcchHHhHHHHHHh
Q psy9087 133 TSCVVCMCDFETSQ----VLRGLP-CSHEFHAKCVDKWLKI 168 (170)
Q Consensus 133 ~~C~ICle~f~~g~----~v~~LP-C~H~FH~~CI~~WL~~ 168 (170)
..|.||||...... .-..|+ |.|.|-..||..|-..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 57999999876532 345687 9999999999999764
No 53
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2879|consensus
Probab=89.29 E-value=0.24 Score=41.42 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=25.6
Q ss_pred CCCCCCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
..+.+|++|-+. ..-.....+|+|+|..-||..
T Consensus 237 t~~~~C~~Cg~~--PtiP~~~~~C~HiyCY~Ci~t 269 (298)
T KOG2879|consen 237 TSDTECPVCGEP--PTIPHVIGKCGHIYCYYCIAT 269 (298)
T ss_pred cCCceeeccCCC--CCCCeeeccccceeehhhhhh
Confidence 457899999987 333455667999999999975
No 55
>KOG0297|consensus
Probab=88.41 E-value=0.22 Score=43.63 Aligned_cols=36 Identities=25% Similarity=0.557 Sum_probs=29.4
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
++..|++|..-+.+-- ....|||.|-..|+..|+..
T Consensus 20 ~~l~C~~C~~vl~~p~--~~~~cgh~fC~~C~~~~~~~ 55 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPV--QTTTCGHRFCAGCLLESLSN 55 (391)
T ss_pred ccccCccccccccCCC--CCCCCCCcccccccchhhcc
Confidence 4678999999876533 22679999999999999986
No 56
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=88.17 E-value=0.27 Score=41.57 Aligned_cols=35 Identities=23% Similarity=0.609 Sum_probs=28.2
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
..-|-||-+-|.. -...+|||.|..-||...|..+
T Consensus 25 ~lrC~IC~~~i~i---p~~TtCgHtFCslCIR~hL~~q 59 (391)
T COG5432 25 MLRCRICDCRISI---PCETTCGHTFCSLCIRRHLGTQ 59 (391)
T ss_pred HHHhhhhhheeec---ceecccccchhHHHHHHHhcCC
Confidence 4679999988765 2345799999999999998765
No 57
>KOG0978|consensus
Probab=87.78 E-value=0.17 Score=47.30 Aligned_cols=33 Identities=24% Similarity=0.538 Sum_probs=26.1
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~ 167 (170)
-..|++|-.-|++ +....|+|+|...||.+-+.
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~e 675 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYE 675 (698)
T ss_pred ceeCCCccCchhh---HHHHhcchHHHHHHHHHHHH
Confidence 3589999988776 33445999999999988654
No 58
>KOG4265|consensus
Probab=87.75 E-value=0.27 Score=42.34 Aligned_cols=29 Identities=28% Similarity=0.739 Sum_probs=21.6
Q ss_pred CCCCccccccccCCCeeeEecCCCc-chHHhHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHE-FHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~-FH~~CI~ 163 (170)
+.+|+|||.+-.+ +..|||.|. -...|.+
T Consensus 290 gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~ 319 (349)
T KOG4265|consen 290 GKECVICLSESRD---TVVLPCRHLCLCSGCAK 319 (349)
T ss_pred CCeeEEEecCCcc---eEEecchhhehhHhHHH
Confidence 6799999998544 679999997 3444443
No 59
>KOG3268|consensus
Probab=87.41 E-value=0.42 Score=37.72 Aligned_cols=36 Identities=22% Similarity=0.643 Sum_probs=24.1
Q ss_pred CCCccccccccCCC----eeeEecCCCcchHHhHHHHHHh
Q psy9087 133 TSCVVCMCDFETSQ----VLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 133 ~~C~ICle~f~~g~----~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
..|.||..---+|. ..--..||.-||.-|+..||+.
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRg 205 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRG 205 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHH
Confidence 34666654333332 2334569999999999999974
No 60
>KOG0311|consensus
Probab=86.30 E-value=0.12 Score=44.54 Aligned_cols=35 Identities=29% Similarity=0.587 Sum_probs=26.8
Q ss_pred CCCCccccccccCCCeeeEec-CCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LP-C~H~FH~~CI~~WL~~~ 169 (170)
+..|.|||+=++. .+..+ |.|.|..+||..=|+..
T Consensus 43 ~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~g 78 (381)
T KOG0311|consen 43 QVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSG 78 (381)
T ss_pred hhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhc
Confidence 5689999997654 23334 99999999999877654
No 61
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=86.00 E-value=0.41 Score=29.14 Aligned_cols=31 Identities=23% Similarity=0.563 Sum_probs=24.3
Q ss_pred CCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
.|.||...-..++.|.--.|+-.||..|+..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~ 31 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGP 31 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTS
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCC
Confidence 3889999666666666667999999999753
No 62
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=85.97 E-value=0.34 Score=38.90 Aligned_cols=32 Identities=25% Similarity=0.533 Sum_probs=25.0
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhHHHHHH
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~ 167 (170)
..|.||-++|+. -....|||.|...|...=++
T Consensus 197 F~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~ 228 (259)
T COG5152 197 FLCGICKKDYES---PVVTECGHSFCSLCAIRKYQ 228 (259)
T ss_pred eeehhchhhccc---hhhhhcchhHHHHHHHHHhc
Confidence 379999999976 33556999999999865443
No 63
>KOG0309|consensus
Probab=83.71 E-value=0.62 Score=44.11 Aligned_cols=38 Identities=24% Similarity=0.473 Sum_probs=26.8
Q ss_pred CCCCccccccccC---------CCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFET---------SQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~---------g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
...|+||++.+-. |-......|+|+-|.+|...|++..
T Consensus 1018 i~~~~~~~~~~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~g 1064 (1081)
T KOG0309|consen 1018 ITQCAICKGFTFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTG 1064 (1081)
T ss_pred eeeccccccceeeeeeEeeEeeccchhhccccccccHHHHHHHHhcC
Confidence 3556666665533 3334456799999999999999864
No 64
>KOG2066|consensus
Probab=82.29 E-value=0.6 Score=44.16 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=29.4
Q ss_pred CCCCccccccccC-C---CeeeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFET-S---QVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~-g---~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+..|.-|.+.... | +.+..+-|+|.||..|+..-..++
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~ 825 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRN 825 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhc
Confidence 3479999988753 3 468889999999999997665544
No 65
>KOG1609|consensus
Probab=81.54 E-value=0.88 Score=37.75 Aligned_cols=37 Identities=35% Similarity=0.689 Sum_probs=28.4
Q ss_pred CCCCccccccccCCCe-eeEecCC-----CcchHHhHHHHHHh
Q psy9087 132 QTSCVVCMCDFETSQV-LRGLPCS-----HEFHAKCVDKWLKI 168 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~-v~~LPC~-----H~FH~~CI~~WL~~ 168 (170)
+..|-||.++....+. ....||. +..|..|+..|+..
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~ 120 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSI 120 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhcc
Confidence 4689999998765443 4566764 67899999999974
No 66
>KOG1815|consensus
Probab=81.02 E-value=1.6 Score=38.82 Aligned_cols=37 Identities=24% Similarity=0.660 Sum_probs=31.4
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
....|-||.+.+.. ....+.|+|.|-..|....|.++
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred ccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhhe
Confidence 35789999999887 66778899999999999888753
No 67
>KOG1812|consensus
Probab=80.85 E-value=0.65 Score=40.65 Aligned_cols=37 Identities=22% Similarity=0.688 Sum_probs=28.1
Q ss_pred CCCCccccccccCC-CeeeEecCCCcchHHhHHHHHHh
Q psy9087 132 QTSCVVCMCDFETS-QVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 132 ~~~C~ICle~f~~g-~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
..+|.||..++... +....+.|+|.|-.+|+.+-++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 56899999555444 44556669999999999987653
No 68
>KOG1785|consensus
Probab=80.50 E-value=0.71 Score=40.73 Aligned_cols=32 Identities=22% Similarity=0.696 Sum_probs=26.6
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhHHHHHH
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~ 167 (170)
.-|-||-|. +..|+.=||||.....|+..|=.
T Consensus 370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~ 401 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQD 401 (563)
T ss_pred HHHHHhhcc---CCCcccccccchHHHHHHHhhcc
Confidence 469999875 34578889999999999999964
No 69
>KOG4692|consensus
Probab=80.38 E-value=1.7 Score=37.84 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=31.1
Q ss_pred CCCCCCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhCC
Q psy9087 127 KHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIGT 170 (170)
Q Consensus 127 ~~~~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~~ 170 (170)
..+.++..|+||...= -....-||+|.=...||.+-|.+++
T Consensus 417 lp~sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlmN~k 457 (489)
T KOG4692|consen 417 LPDSEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLMNCK 457 (489)
T ss_pred CCCcccccCcceeccc---chhhccCCCCchHHHHHHHHHhcCC
Confidence 3456788999998752 1234678999999999999887654
No 70
>KOG3039|consensus
Probab=78.40 E-value=1.6 Score=36.16 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=32.4
Q ss_pred CCCCCccccccccCCCeeeEe-cCCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFETSQVLRGL-PCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~L-PC~H~FH~~CI~~WL~~ 168 (170)
....|+||-+.+...-.+..| ||||+|-.+|+++.+..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~ 258 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK 258 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc
Confidence 346899999999888887777 49999999999987654
No 71
>KOG1571|consensus
Probab=78.10 E-value=1.5 Score=37.99 Aligned_cols=23 Identities=30% Similarity=0.676 Sum_probs=19.8
Q ss_pred CCCCCccccccccCCCeeeEecCCCc
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHE 156 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~ 156 (170)
....|.||+++.++ ...+||||+
T Consensus 304 ~p~lcVVcl~e~~~---~~fvpcGh~ 326 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVPCGHV 326 (355)
T ss_pred CCCceEEecCCccc---eeeecCCcE
Confidence 46789999999776 778999998
No 72
>KOG4159|consensus
Probab=77.82 E-value=1.4 Score=38.86 Aligned_cols=35 Identities=29% Similarity=0.632 Sum_probs=27.1
Q ss_pred CCCCCCccccccccCCCeeeEecCCCcchHHhHHHHHH
Q psy9087 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~ 167 (170)
..+..|.||+.-+.. ...+||||.|-..||+.=|.
T Consensus 82 ~sef~c~vc~~~l~~---pv~tpcghs~c~~Cl~r~ld 116 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP---PVVTPCGHSFCLECLDRSLD 116 (398)
T ss_pred cchhhhhhhHhhcCC---CccccccccccHHHHHHHhc
Confidence 446789999776654 44569999999999988554
No 73
>KOG3053|consensus
Probab=76.09 E-value=1.4 Score=36.61 Aligned_cols=39 Identities=21% Similarity=0.613 Sum_probs=28.1
Q ss_pred CCCCCccccccccCCCee-eEecC-----CCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVL-RGLPC-----SHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v-~~LPC-----~H~FH~~CI~~WL~~~ 169 (170)
.+..|-||+..=++.-.- =+=|| .|..|..|+..|+.++
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK 63 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEK 63 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHH
Confidence 466899999875543322 23465 3999999999999875
No 74
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=74.49 E-value=1.9 Score=25.86 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=20.0
Q ss_pred CccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 135 CVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 135 C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
|.+|-+-...|+....-.|+=.+|..|+..+++..
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~ 35 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHR 35 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcC
Confidence 66777777777665555688899999999998754
No 75
>KOG1940|consensus
Probab=73.60 E-value=1.7 Score=36.54 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=27.2
Q ss_pred CCCccccccccCCC-eeeEecCCCcchHHhHHHHH
Q psy9087 133 TSCVVCMCDFETSQ-VLRGLPCSHEFHAKCVDKWL 166 (170)
Q Consensus 133 ~~C~ICle~f~~g~-~v~~LPC~H~FH~~CI~~WL 166 (170)
..|+||.+.+-.+. .+..++|||.-|..|...-.
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~ 193 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMI 193 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHh
Confidence 45999999986655 47789999999988876543
No 76
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=72.62 E-value=1.6 Score=28.74 Aligned_cols=31 Identities=19% Similarity=0.478 Sum_probs=15.5
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhHHHH
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKW 165 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~W 165 (170)
..|++|.+-++. .|..-.|.|+|-..||.+-
T Consensus 8 LrCs~C~~~l~~--pv~l~~CeH~fCs~Ci~~~ 38 (65)
T PF14835_consen 8 LRCSICFDILKE--PVCLGGCEHIFCSSCIRDC 38 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGG
T ss_pred cCCcHHHHHhcC--CceeccCccHHHHHHhHHh
Confidence 469999987543 4555569999999999763
No 77
>KOG2114|consensus
Probab=72.47 E-value=1.9 Score=41.21 Aligned_cols=29 Identities=21% Similarity=0.749 Sum_probs=22.2
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhHH
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~ 163 (170)
..|..|--.++. .....-|||.||.+|+.
T Consensus 841 skCs~C~~~Ldl--P~VhF~CgHsyHqhC~e 869 (933)
T KOG2114|consen 841 SKCSACEGTLDL--PFVHFLCGHSYHQHCLE 869 (933)
T ss_pred eeecccCCcccc--ceeeeecccHHHHHhhc
Confidence 579999776544 34445599999999997
No 78
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=71.65 E-value=1.7 Score=25.00 Aligned_cols=25 Identities=28% Similarity=0.704 Sum_probs=17.7
Q ss_pred CCccccccccCCCe--------eeEecCCCcch
Q psy9087 134 SCVVCMCDFETSQV--------LRGLPCSHEFH 158 (170)
Q Consensus 134 ~C~ICle~f~~g~~--------v~~LPC~H~FH 158 (170)
.|+=|...|+..++ ++--.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 58888888876553 44445899885
No 79
>KOG2071|consensus
Probab=71.28 E-value=2.3 Score=39.11 Aligned_cols=35 Identities=31% Similarity=0.627 Sum_probs=23.8
Q ss_pred CCCCCCccccccccC-----CCe-----eeEecCCCcchHHhHHH
Q psy9087 130 SDQTSCVVCMCDFET-----SQV-----LRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 130 ~~~~~C~ICle~f~~-----g~~-----v~~LPC~H~FH~~CI~~ 164 (170)
+....|+||.|.|+. .+. ...+-=|-+||..|+..
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e 555 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSE 555 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccch
Confidence 346789999999975 111 11232588999999864
No 80
>PF04641 Rtf2: Rtf2 RING-finger
Probab=68.33 E-value=4.9 Score=33.13 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=26.9
Q ss_pred CCCCCccccccccCCCeee-EecCCCcchHHhHHH
Q psy9087 131 DQTSCVVCMCDFETSQVLR-GLPCSHEFHAKCVDK 164 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~-~LPC~H~FH~~CI~~ 164 (170)
....|+|...+|....... ..||||+|=..+|..
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke 146 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKE 146 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHh
Confidence 3578999999996555544 458999999999876
No 81
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=68.27 E-value=5.7 Score=27.99 Aligned_cols=31 Identities=26% Similarity=0.649 Sum_probs=23.5
Q ss_pred CCCCccccccccCCCeeeEec--CCCcchHHhHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLP--CSHEFHAKCVDK 164 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LP--C~H~FH~~CI~~ 164 (170)
...|.||... .|-.+.--- |...||..|...
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 4589999998 555555444 888999999864
No 82
>KOG1729|consensus
Probab=67.97 E-value=0.72 Score=38.93 Aligned_cols=37 Identities=27% Similarity=0.582 Sum_probs=30.2
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
..|.+|+++|..+......-|--+||..|+-.|++..
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 4899999999876666666555599999999999764
No 83
>KOG1002|consensus
Probab=66.01 E-value=3.8 Score=37.56 Aligned_cols=34 Identities=21% Similarity=0.585 Sum_probs=25.9
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~ 167 (170)
....|.+|-+.-++ .....|.|.|..-||..+..
T Consensus 535 ~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~ 568 (791)
T KOG1002|consen 535 GEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVE 568 (791)
T ss_pred CceeecccCChhhh---hHhhhhhHHHHHHHHHHHHH
Confidence 35689999886333 44566999999999988764
No 84
>KOG2932|consensus
Probab=63.98 E-value=3.2 Score=35.54 Aligned_cols=28 Identities=32% Similarity=0.669 Sum_probs=19.8
Q ss_pred CCccccccccCCCeeeEecCCCcchHHhHH
Q psy9087 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LPC~H~FH~~CI~ 163 (170)
.|.-|= |-..-.-+.+||+|+|..+|..
T Consensus 92 fCd~Cd--~PI~IYGRmIPCkHvFCl~CAr 119 (389)
T KOG2932|consen 92 FCDRCD--FPIAIYGRMIPCKHVFCLECAR 119 (389)
T ss_pred eecccC--Ccceeeecccccchhhhhhhhh
Confidence 465553 3344456789999999999964
No 85
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=62.85 E-value=6 Score=21.49 Aligned_cols=29 Identities=21% Similarity=0.563 Sum_probs=11.5
Q ss_pred CCccccccccCCCeeeEecCCCcchHHhH
Q psy9087 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCV 162 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LPC~H~FH~~CI 162 (170)
.|.+|-+....+-.-.-..|.-.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 58888888766444555679999999996
No 86
>KOG0825|consensus
Probab=62.49 E-value=6.4 Score=37.79 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=30.0
Q ss_pred CCCCCccccccccC-CCeeeEec---CCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFET-SQVLRGLP---CSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~-g~~v~~LP---C~H~FH~~CI~~WL~~ 168 (170)
+.+.|.||..++.. .+....+| |+|.|...||..|+.+
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~Dq 136 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQ 136 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHH
Confidence 35788888888866 33455666 9999999999999864
No 87
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=62.00 E-value=5.5 Score=21.95 Aligned_cols=28 Identities=14% Similarity=0.415 Sum_probs=18.4
Q ss_pred CCccccccccCCCeeeEecCCCcchHHhH
Q psy9087 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCV 162 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LPC~H~FH~~CI 162 (170)
.|..|-+.+..++..... =+..||.+|.
T Consensus 1 ~C~~C~~~i~~~~~~~~~-~~~~~H~~Cf 28 (39)
T smart00132 1 KCAGCGKPIRGGELVLRA-LGKVWHPECF 28 (39)
T ss_pred CccccCCcccCCcEEEEe-CCccccccCC
Confidence 377888887776333222 3788888885
No 88
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=57.53 E-value=7.1 Score=24.12 Aligned_cols=29 Identities=17% Similarity=0.484 Sum_probs=12.0
Q ss_pred CccccccccCCCeeeEec--CCCcchHHhHHH
Q psy9087 135 CVVCMCDFETSQVLRGLP--CSHEFHAKCVDK 164 (170)
Q Consensus 135 C~ICle~f~~g~~v~~LP--C~H~FH~~CI~~ 164 (170)
|++|.+++.. .....+| |++..-..|...
T Consensus 1 cp~C~e~~d~-~d~~~~PC~Cgf~IC~~C~~~ 31 (48)
T PF14570_consen 1 CPLCDEELDE-TDKDFYPCECGFQICRFCYHD 31 (48)
T ss_dssp -TTTS-B--C-CCTT--SSTTS----HHHHHH
T ss_pred CCCccccccc-CCCccccCcCCCcHHHHHHHH
Confidence 7899999933 3345566 667666666544
No 89
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=56.67 E-value=6.7 Score=22.55 Aligned_cols=25 Identities=28% Similarity=0.663 Sum_probs=17.7
Q ss_pred CCccccccccCCCe--------eeEecCCCcch
Q psy9087 134 SCVVCMCDFETSQV--------LRGLPCSHEFH 158 (170)
Q Consensus 134 ~C~ICle~f~~g~~--------v~~LPC~H~FH 158 (170)
.|+-|...|+..+. |+--.|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 68888888866443 44445899986
No 90
>KOG1001|consensus
Probab=55.03 E-value=7.5 Score=36.63 Aligned_cols=31 Identities=23% Similarity=0.558 Sum_probs=25.5
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhHHHHHH
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~ 167 (170)
..|.||++ -+.....+|+|.|-.+|+..=+.
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~ 485 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQ 485 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccc
Confidence 68999999 45666778999999999987544
No 91
>KOG0826|consensus
Probab=52.73 E-value=15 Score=31.75 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=28.2
Q ss_pred CCCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhCC
Q psy9087 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIGT 170 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~~ 170 (170)
.+...|+||+..-..... .---|-+|...||...+.+++
T Consensus 298 ~~~~~CpvClk~r~Nptv--l~vSGyVfCY~Ci~~Yv~~~~ 336 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTV--LEVSGYVFCYPCIFSYVVNYG 336 (357)
T ss_pred CccccChhHHhccCCCce--EEecceEEeHHHHHHHHHhcC
Confidence 356789999998544321 122589999999999988653
No 92
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=51.00 E-value=12 Score=29.76 Aligned_cols=33 Identities=27% Similarity=0.667 Sum_probs=24.3
Q ss_pred CCCCCcccccc-----ccCCCeeeEecCCCcchHHhHH
Q psy9087 131 DQTSCVVCMCD-----FETSQVLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~-----f~~g~~v~~LPC~H~FH~~CI~ 163 (170)
.+..|-||-++ |+.+..++.-.|+-+||..|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC
Confidence 36789999763 4444555556699999999976
No 93
>KOG0269|consensus
Probab=50.74 E-value=10 Score=36.16 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=24.2
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhHHHHHHhCC
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIGT 170 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~~ 170 (170)
..|++|-.-.. |..+-.=-|||.=|.+|+.+|+..++
T Consensus 780 ~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s 816 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKAS 816 (839)
T ss_pred cCceeecceee-eeEeecccccccccHHHHHHHHhcCC
Confidence 36777754322 12222222999999999999998764
No 94
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=50.32 E-value=9.2 Score=20.43 Aligned_cols=23 Identities=26% Similarity=0.644 Sum_probs=14.2
Q ss_pred CCccccccccCCCeeeEec-CCCcch
Q psy9087 134 SCVVCMCDFETSQVLRGLP-CSHEFH 158 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LP-C~H~FH 158 (170)
.|+-|-..+... ...=| |||.|-
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCCc
Confidence 577777765332 33346 899883
No 95
>KOG1812|consensus
Probab=47.64 E-value=8.7 Score=33.67 Aligned_cols=38 Identities=24% Similarity=0.489 Sum_probs=27.7
Q ss_pred CCCCccccccccCCCeeeEe--cCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFETSQVLRGL--PCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~L--PC~H~FH~~CI~~WL~~~ 169 (170)
-..|+.|.-.++..+....+ .|||.|-..|...|...+
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~ 345 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHN 345 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCC
Confidence 35788888877665543333 399999999999997643
No 96
>KOG4275|consensus
Probab=47.17 E-value=7.7 Score=33.00 Aligned_cols=22 Identities=27% Similarity=0.464 Sum_probs=16.8
Q ss_pred CCCCccccccccCCCeeeEecCCCc
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHE 156 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~ 156 (170)
..-|+||++.-. ....|+|||.
T Consensus 300 ~~LC~ICmDaP~---DCvfLeCGHm 321 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLECGHM 321 (350)
T ss_pred HHHHHHHhcCCc---ceEEeecCcE
Confidence 457999998633 3668999996
No 97
>KOG4172|consensus
Probab=46.65 E-value=4.9 Score=25.70 Aligned_cols=29 Identities=17% Similarity=0.372 Sum_probs=17.4
Q ss_pred CCCCccccccccCCCeeeEecCCCc-chHHhHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHE-FHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~-FH~~CI~ 163 (170)
.++|.||+|.-.+ .| ...|||. .-.+|-.
T Consensus 7 ~dECTICye~pvd--sV-lYtCGHMCmCy~Cg~ 36 (62)
T KOG4172|consen 7 SDECTICYEHPVD--SV-LYTCGHMCMCYACGL 36 (62)
T ss_pred ccceeeeccCcch--HH-HHHcchHHhHHHHHH
Confidence 4789999997333 22 2239997 3444533
No 98
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=45.86 E-value=13 Score=32.40 Aligned_cols=35 Identities=17% Similarity=0.547 Sum_probs=25.8
Q ss_pred CCCCCCCCCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 127 KHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 127 ~~~~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
+.+++...|.||-+... .+..+||+|....-|...
T Consensus 56 dtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~R 90 (493)
T COG5236 56 DTDEENMNCQICAGSTT---YSARYPCGHQICHACAVR 90 (493)
T ss_pred ccccccceeEEecCCce---EEEeccCCchHHHHHHHH
Confidence 34456778999988653 477899999887777543
No 99
>KOG1829|consensus
Probab=45.62 E-value=6.8 Score=36.22 Aligned_cols=34 Identities=32% Similarity=0.673 Sum_probs=23.9
Q ss_pred CCCCCcccccc-----ccCCCeeeEecCCCcchHHhHHH
Q psy9087 131 DQTSCVVCMCD-----FETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 131 ~~~~C~ICle~-----f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
.+..|.+|... |+.....+..-|+++||..|...
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r 548 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR 548 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc
Confidence 35678888432 34444566677999999999753
No 100
>KOG1813|consensus
Probab=42.46 E-value=9.9 Score=32.30 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=25.3
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
..|-||-+.|... .+..|+|.|...|-..=+++
T Consensus 242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk 274 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQK 274 (313)
T ss_pred ccccccccccccc---hhhcCCceeehhhhcccccc
Confidence 4699999999762 35569999999997665443
No 101
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=39.51 E-value=21 Score=23.97 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=21.9
Q ss_pred CCCCccccccccCCCeeeEe--cCCCcchHHhHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGL--PCSHEFHAKCVDK 164 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~L--PC~H~FH~~CI~~ 164 (170)
...|.+|-.. .|-.+.-- .|.-.||..|...
T Consensus 36 ~~~C~~C~~~--~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKK--GGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCC--CCeEEEEeCCCCCcEEChHHHcc
Confidence 4589999976 35444432 3999999999753
No 102
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=38.85 E-value=20 Score=23.64 Aligned_cols=13 Identities=31% Similarity=0.930 Sum_probs=9.1
Q ss_pred cchHHhHHHHHHh
Q psy9087 156 EFHAKCVDKWLKI 168 (170)
Q Consensus 156 ~FH~~CI~~WL~~ 168 (170)
-|...|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3889999999863
No 103
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=36.37 E-value=22 Score=21.57 Aligned_cols=27 Identities=15% Similarity=0.422 Sum_probs=16.4
Q ss_pred CccccccccCCCeeeEecCCCcchHHhH
Q psy9087 135 CVVCMCDFETSQVLRGLPCSHEFHAKCV 162 (170)
Q Consensus 135 C~ICle~f~~g~~v~~LPC~H~FH~~CI 162 (170)
|+-|-+.+..++.+. ..-+..||.+|.
T Consensus 1 C~~C~~~I~~~~~~~-~~~~~~~H~~Cf 27 (58)
T PF00412_consen 1 CARCGKPIYGTEIVI-KAMGKFWHPECF 27 (58)
T ss_dssp BTTTSSBESSSSEEE-EETTEEEETTTS
T ss_pred CCCCCCCccCcEEEE-EeCCcEEEcccc
Confidence 566777776555432 235677777774
No 104
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=35.75 E-value=12 Score=23.80 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=15.0
Q ss_pred CCCeeeEecCCCcchHHhHHH
Q psy9087 144 TSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 144 ~g~~v~~LPC~H~FH~~CI~~ 164 (170)
.+..-..+||||+--..|.+-
T Consensus 16 ~~~~~~~~pCgH~I~~~~f~~ 36 (55)
T PF14447_consen 16 VGTKGTVLPCGHLICDNCFPG 36 (55)
T ss_pred cccccccccccceeeccccCh
Confidence 345566889999987777554
No 105
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=35.35 E-value=24 Score=25.53 Aligned_cols=25 Identities=24% Similarity=0.616 Sum_probs=14.3
Q ss_pred CCccccccccCCCe-eeEec-CCCcch
Q psy9087 134 SCVVCMCDFETSQV-LRGLP-CSHEFH 158 (170)
Q Consensus 134 ~C~ICle~f~~g~~-v~~LP-C~H~FH 158 (170)
.|+.|-.+|.-.+. ....| |+|.|-
T Consensus 5 ~cp~c~sEytYed~~~~~cpec~~ew~ 31 (112)
T COG2824 5 PCPKCNSEYTYEDGGQLICPECAHEWN 31 (112)
T ss_pred CCCccCCceEEecCceEeCchhccccc
Confidence 57777777743332 33445 777653
No 106
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=34.15 E-value=29 Score=22.48 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=14.2
Q ss_pred cCCCeeeEecCCCcchHH
Q psy9087 143 ETSQVLRGLPCSHEFHAK 160 (170)
Q Consensus 143 ~~g~~v~~LPC~H~FH~~ 160 (170)
+.|.-|..|.|||.=|..
T Consensus 7 ee~hWVA~L~CGH~QHvR 24 (61)
T PF12088_consen 7 EEGHWVAELSCGHTQHVR 24 (61)
T ss_pred ccCCEEEEeccccccccc
Confidence 356679999999987754
No 107
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=33.82 E-value=19 Score=23.06 Aligned_cols=33 Identities=15% Similarity=0.448 Sum_probs=15.7
Q ss_pred CCCCCccccccccCCCeee-EecCCCcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQVLR-GLPCSHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~-~LPC~H~FH~~CI~ 163 (170)
+...|.+|...|..-..-. -=.||++|-.+|..
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~ 41 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSS 41 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhC
Confidence 3568999999996543222 22399999888764
No 108
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.76 E-value=43 Score=23.74 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=28.8
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWL 166 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL 166 (170)
.-.|.||-+....|+.....+ .-..|.+|+..=.
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~ 39 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESK 39 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHH
Confidence 357999999999999999888 7778999987643
No 109
>KOG0298|consensus
Probab=32.99 E-value=12 Score=37.66 Aligned_cols=36 Identities=22% Similarity=0.491 Sum_probs=28.4
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
...|.||++..... ....-|||.|-..|+..|+..+
T Consensus 1153 ~~~c~ic~dil~~~--~~I~~cgh~~c~~c~~~~l~~~ 1188 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQ--GGIAGCGHEPCCRCDELWLYAS 1188 (1394)
T ss_pred ccchHHHHHHHHhc--CCeeeechhHhhhHHHHHHHHh
Confidence 45899999987632 2344599999999999999875
No 110
>PF15353 HECA: Headcase protein family homologue
Probab=30.86 E-value=33 Score=24.77 Aligned_cols=15 Identities=33% Similarity=0.950 Sum_probs=13.1
Q ss_pred cCCCcchHHhHHHHH
Q psy9087 152 PCSHEFHAKCVDKWL 166 (170)
Q Consensus 152 PC~H~FH~~CI~~WL 166 (170)
|.++..|.+|.+.|=
T Consensus 39 p~~~~MH~~CF~~wE 53 (107)
T PF15353_consen 39 PFGQYMHRECFEKWE 53 (107)
T ss_pred CCCCchHHHHHHHHH
Confidence 568999999999994
No 111
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=29.20 E-value=33 Score=20.59 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=24.3
Q ss_pred CCCCccccccc--cCCCeeeEecCCCcchHHhHHH
Q psy9087 132 QTSCVVCMCDF--ETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 132 ~~~C~ICle~f--~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
...|.+|-+.+ ...+.++-.-|+=..|.+|++.
T Consensus 11 ~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 11 PTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp TEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 55899999998 4556677777999999999753
No 112
>PF00645 zf-PARP: Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region; InterPro: IPR001510 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents PARP (Poly(ADP) polymerase) type zinc finger domains. NAD(+) ADP-ribosyltransferase(2.4.2.30 from EC) [, ] is a eukaryotic enzyme that catalyses the covalent attachment of ADP-ribose units from NAD(+) to various nuclear acceptor proteins. This post-translational modification of nuclear proteins is dependent on DNA. It appears to be involved in the regulation of various important cellular processes such as differentiation, proliferation and tumour transformation as well as in the regulation of the molecular events involved in the recovery of the cell from DNA damage. Structurally, NAD(+) ADP-ribosyltransferase consists of three distinct domains: an N-terminal zinc-dependent DNA-binding domain, a central automodification domain and a C-terminal NAD-binding domain. The DNA-binding region contains a pair of PARP-type zinc finger domains which have been shown to bind DNA in a zinc-dependent manner. The PARP-type zinc finger domains seem to bind specifically to single-stranded DNA and to act as a DNA nick sensor. DNA ligase III [] contains, in its N-terminal section, a single copy of a zinc finger highly similar to those of PARP. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding; PDB: 1UW0_A 3OD8_D 3ODA_A 4AV1_A 2DMJ_A 4DQY_D 2L30_A 2CS2_A 2L31_A 3ODE_B ....
Probab=29.09 E-value=38 Score=22.47 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=25.7
Q ss_pred CCCCccccccccCCCe-eeE---ecCC-----CcchHHhHHHHHHh
Q psy9087 132 QTSCVVCMCDFETSQV-LRG---LPCS-----HEFHAKCVDKWLKI 168 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~-v~~---LPC~-----H~FH~~CI~~WL~~ 168 (170)
-..|-.|-+.+..|+- +.. -+-+ +.||..|+..++..
T Consensus 7 Ra~Ck~C~~~I~kg~lRiG~~~~~~~~~~~~~~W~H~~C~~~~~~~ 52 (82)
T PF00645_consen 7 RAKCKGCKKKIAKGELRIGKIVPSPEGDGDIPKWYHWDCFFKKQLR 52 (82)
T ss_dssp TEBETTTSCBE-TTSEEEEEEEEETTSSCEEEEEEEHHHHHHTTCC
T ss_pred CccCcccCCcCCCCCEEEEEEecccccCCCCCceECccccccchhh
Confidence 3579999999988774 222 2344 68999999987654
No 113
>KOG3039|consensus
Probab=28.93 E-value=34 Score=28.54 Aligned_cols=34 Identities=9% Similarity=0.111 Sum_probs=27.1
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
-+.|+.||..+.+ -...|=||+|..+||...+..
T Consensus 43 FdcCsLtLqPc~d---Pvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 43 FDCCSLTLQPCRD---PVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cceeeeecccccC---CccCCCCeeeeHHHHHHHHHH
Confidence 4689999998866 335567999999999988754
No 114
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=28.52 E-value=51 Score=18.92 Aligned_cols=33 Identities=36% Similarity=0.532 Sum_probs=24.7
Q ss_pred CCCCccccccccCCC-eeeEecCCCcchHHhHHH
Q psy9087 132 QTSCVVCMCDFETSQ-VLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 132 ~~~C~ICle~f~~g~-~v~~LPC~H~FH~~CI~~ 164 (170)
...|.+|.+.+.... .++-..|+=..|..|...
T Consensus 11 ~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence 457999999886543 444555889999999864
No 115
>KOG4323|consensus
Probab=27.71 E-value=52 Score=29.72 Aligned_cols=33 Identities=21% Similarity=0.532 Sum_probs=21.9
Q ss_pred CCCCccccccc-cCCCeee-EecCCCcchHHhHHH
Q psy9087 132 QTSCVVCMCDF-ETSQVLR-GLPCSHEFHAKCVDK 164 (170)
Q Consensus 132 ~~~C~ICle~f-~~g~~v~-~LPC~H~FH~~CI~~ 164 (170)
+..|++|.+.- -.++.+. .=.|+-.||..|-.+
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp 202 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQP 202 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccC
Confidence 45699999653 3344322 234899999999654
No 116
>PRK15351 type III secretion system protein SsaP; Provisional
Probab=27.54 E-value=74 Score=23.04 Aligned_cols=77 Identities=19% Similarity=0.346 Sum_probs=39.2
Q ss_pred CCChhcHHHHHHHHHHhCccCCCCCCHHHHHc--CCceEeccCCCCCCCCCCccccccccCCCeeeE-ecCCCcchHHh-
Q psy9087 86 TETVENYEALLSLAERLGEAKPRGLNRYEIES--IPSFKFNASKHQSDQTSCVVCMCDFETSQVLRG-LPCSHEFHAKC- 161 (170)
Q Consensus 86 ~~~~~~ye~ll~l~e~~~~~~~~gls~~~i~~--lp~~~~~~~~~~~~~~~C~ICle~f~~g~~v~~-LPC~H~FH~~C- 161 (170)
....++|+.|+...-..+..+ ......+ .-+..|.-.....++..|-||-.+ .+-.+.. .|=.-+||.-|
T Consensus 24 ~~grt~F~qLM~Q~aP~gegn----~~~aln~n~~~t~rYrv~GG~adGl~Cei~~~~--g~~ql~v~Vp~~~~y~slk~ 97 (124)
T PRK15351 24 EAERMDFEQLMHQALPIGENN----PPAALNKNVVFTQRYRVSGGYLDGVECEVCESG--GLIQLRINVPHHEIYRSMKA 97 (124)
T ss_pred ccccchHHHHHhhcCCCCCCC----hHHHhhcccceeeEEEeecccccceEEEEEECC--CeeEEEEecchHHHHHHHHH
Confidence 344677888876543322221 1122222 122344433334567899998654 2223333 34344566665
Q ss_pred HHHHHHh
Q psy9087 162 VDKWLKI 168 (170)
Q Consensus 162 I~~WL~~ 168 (170)
+.+||..
T Consensus 98 ~~~wL~a 104 (124)
T PRK15351 98 LKQWLES 104 (124)
T ss_pred HHHHHHH
Confidence 6789874
No 117
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.56 E-value=1.2e+02 Score=19.19 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCCCccccccccC--CCeeeEec-CCCcchHHhH
Q psy9087 132 QTSCVVCMCDFET--SQVLRGLP-CSHEFHAKCV 162 (170)
Q Consensus 132 ~~~C~ICle~f~~--g~~v~~LP-C~H~FH~~CI 162 (170)
...|+.|-...+. .+.+-.-| ||+.+|.+-.
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~n 61 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVN 61 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEECcHHH
Confidence 4589999988876 44444445 9999998854
No 118
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=25.88 E-value=43 Score=24.23 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=16.3
Q ss_pred CCccccccc--cCCCeeeEecCCCcch
Q psy9087 134 SCVVCMCDF--ETSQVLRGLPCSHEFH 158 (170)
Q Consensus 134 ~C~ICle~f--~~g~~v~~LPC~H~FH 158 (170)
.|+-|..+| ++|+....--|+|.+-
T Consensus 4 ~CP~C~seytY~dg~~~iCpeC~~EW~ 30 (109)
T TIGR00686 4 PCPKCNSEYTYHDGTQLICPSCLYEWN 30 (109)
T ss_pred cCCcCCCcceEecCCeeECcccccccc
Confidence 588888887 4555443333888774
No 119
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=24.98 E-value=47 Score=17.94 Aligned_cols=29 Identities=21% Similarity=0.516 Sum_probs=18.6
Q ss_pred CCccccccccCCCeeeEecCCCcchHHhH
Q psy9087 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCV 162 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LPC~H~FH~~CI 162 (170)
.|.||-++.....--.-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 58888666554423333558888888874
No 121
>PRK10220 hypothetical protein; Provisional
Probab=24.97 E-value=51 Score=23.95 Aligned_cols=25 Identities=24% Similarity=0.666 Sum_probs=15.1
Q ss_pred CCccccccc--cCCCeeeEecCCCcch
Q psy9087 134 SCVVCMCDF--ETSQVLRGLPCSHEFH 158 (170)
Q Consensus 134 ~C~ICle~f--~~g~~v~~LPC~H~FH 158 (170)
.|+-|-.+| ++|+....--|+|.|-
T Consensus 5 ~CP~C~seytY~d~~~~vCpeC~hEW~ 31 (111)
T PRK10220 5 HCPKCNSEYTYEDNGMYICPECAHEWN 31 (111)
T ss_pred cCCCCCCcceEcCCCeEECCcccCcCC
Confidence 578888777 4444433333888764
No 122
>KOG2817|consensus
Probab=24.91 E-value=66 Score=28.43 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=30.1
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~ 167 (170)
.-.|+|=-+.=.+.+.-+.|.|||+--.+=|.+--+
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ 369 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSK 369 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhh
Confidence 458999999988899999999999988887776443
No 123
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=24.60 E-value=60 Score=19.66 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=23.2
Q ss_pred CCCccccccccCCCee-eEecCCCcchHHhHHHH
Q psy9087 133 TSCVVCMCDFETSQVL-RGLPCSHEFHAKCVDKW 165 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v-~~LPC~H~FH~~CI~~W 165 (170)
..|.+|-..|.....- .--.||++|-..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 4799999988774432 22349999998887543
No 124
>KOG3005|consensus
Probab=24.23 E-value=26 Score=29.35 Aligned_cols=33 Identities=21% Similarity=0.546 Sum_probs=24.7
Q ss_pred CCCCccccccccCCCeeeEe---c-CCCcchHHhHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGL---P-CSHEFHAKCVDK 164 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~L---P-C~H~FH~~CI~~ 164 (170)
...|-+|.+++...+..+.. | |.-++|..|+..
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~ 218 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAE 218 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhH
Confidence 36899999999544443332 2 999999999976
No 125
>KOG3352|consensus
Probab=23.91 E-value=40 Score=25.88 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=15.4
Q ss_pred CCCCccccccccC--------CCeeeEecCCCcch
Q psy9087 132 QTSCVVCMCDFET--------SQVLRGLPCSHEFH 158 (170)
Q Consensus 132 ~~~C~ICle~f~~--------g~~v~~LPC~H~FH 158 (170)
..-| ||.++=.. |+.-+.--|||+|-
T Consensus 111 iVGC-~c~eD~~~V~Wmwl~Kge~~rc~eCG~~fk 144 (153)
T KOG3352|consen 111 IVGC-GCEEDSHAVVWMWLEKGETQRCPECGHYFK 144 (153)
T ss_pred EEee-cccCCCcceEEEEEEcCCcccCCcccceEE
Confidence 3467 88877433 33333233999995
No 126
>KOG1815|consensus
Probab=23.85 E-value=23 Score=31.43 Aligned_cols=36 Identities=22% Similarity=0.460 Sum_probs=26.7
Q ss_pred CCCccccccccCCCe-----eeEecCCCcchHHhHHHHHHh
Q psy9087 133 TSCVVCMCDFETSQV-----LRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 133 ~~C~ICle~f~~g~~-----v~~LPC~H~FH~~CI~~WL~~ 168 (170)
..|+.|.-..+..+. ....+|+|.|+-.|+..|-..
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 459999998877552 222359999999998888643
No 127
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=23.17 E-value=48 Score=19.26 Aligned_cols=33 Identities=39% Similarity=0.504 Sum_probs=24.7
Q ss_pred CCCCccccccccCC--CeeeEecCCCcchHHhHHH
Q psy9087 132 QTSCVVCMCDFETS--QVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 132 ~~~C~ICle~f~~g--~~v~~LPC~H~FH~~CI~~ 164 (170)
...|.+|.+.+... +..+--.|+=..|..|...
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 45799999988653 4455556999999999753
No 128
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=23.16 E-value=57 Score=29.29 Aligned_cols=31 Identities=23% Similarity=0.579 Sum_probs=20.6
Q ss_pred CCCCccccccccCC-CeeeEe---cCCCcchHHhHH
Q psy9087 132 QTSCVVCMCDFETS-QVLRGL---PCSHEFHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f~~g-~~v~~L---PC~H~FH~~CI~ 163 (170)
.-.|.||.. |... +...-+ -|||+=|.+|-.
T Consensus 128 ~C~C~iC~k-fD~~~n~~~Wi~Cd~CgH~cH~dCAL 162 (446)
T PF07227_consen 128 RCMCCICSK-FDDNKNTCSWIGCDVCGHWCHLDCAL 162 (446)
T ss_pred cCCccccCC-cccCCCCeeEEeccCCCceehhhhhc
Confidence 357889965 7442 333333 399999999964
No 129
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=21.81 E-value=25 Score=22.14 Aligned_cols=11 Identities=55% Similarity=1.069 Sum_probs=7.8
Q ss_pred ccceeeccCce
Q psy9087 3 LCQLIACTPVK 13 (170)
Q Consensus 3 ~~~~~~~~~~~ 13 (170)
|.||+.|||-+
T Consensus 14 laqllsctpsa 24 (60)
T PF10913_consen 14 LAQLLSCTPSA 24 (60)
T ss_pred HHHHHcCCCCC
Confidence 56788888754
No 130
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=21.66 E-value=71 Score=19.90 Aligned_cols=27 Identities=26% Similarity=0.645 Sum_probs=11.9
Q ss_pred CccccccccCCC------eeeEec-CCCcchHHh
Q psy9087 135 CVVCMCDFETSQ------VLRGLP-CSHEFHAKC 161 (170)
Q Consensus 135 C~ICle~f~~g~------~v~~LP-C~H~FH~~C 161 (170)
|--|+..|..+. ....=| |++.|-.+|
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC 35 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC 35 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc
Confidence 455666666542 223334 888887776
No 131
>PF10071 DUF2310: Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310); InterPro: IPR016908 This group represents uncharacterised conserved proteins.
Probab=20.53 E-value=75 Score=26.51 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=21.7
Q ss_pred CCCCCCccccccccCCCeeeEecCCCcchHHh
Q psy9087 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKC 161 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~C 161 (170)
+....|+.|-.+|..++.+ .++||..|
T Consensus 218 e~~r~CP~Cg~~W~L~~pl-----h~iFdFKC 244 (258)
T PF10071_consen 218 EQARKCPSCGGDWRLKEPL-----HDIFDFKC 244 (258)
T ss_pred hhCCCCCCCCCccccCCch-----hhceeccC
Confidence 3467899999999887766 67788877
No 132
>KOG3799|consensus
Probab=20.47 E-value=46 Score=25.24 Aligned_cols=16 Identities=25% Similarity=0.723 Sum_probs=11.6
Q ss_pred CCCCCCccccc-cccCC
Q psy9087 130 SDQTSCVVCMC-DFETS 145 (170)
Q Consensus 130 ~~~~~C~ICle-~f~~g 145 (170)
.++.+|.||+. .|.+|
T Consensus 63 ~ddatC~IC~KTKFADG 79 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADG 79 (169)
T ss_pred CcCcchhhhhhcccccc
Confidence 45779999996 45555
Done!