Query psy9087
Match_columns 170
No_of_seqs 277 out of 1471
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 18:31:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 3.3E-16 1.1E-20 108.6 6.2 65 105-169 12-77 (91)
2 1x4j_A Ring finger protein 38; 99.6 2.5E-16 8.4E-21 105.1 1.7 57 113-169 4-60 (75)
3 2kiz_A E3 ubiquitin-protein li 99.4 5.1E-13 1.8E-17 87.3 5.2 40 130-169 12-51 (69)
4 1iym_A EL5; ring-H2 finger, ub 99.4 2.2E-13 7.6E-18 85.1 2.6 39 131-169 4-43 (55)
5 2ep4_A Ring finger protein 24; 99.4 6.2E-13 2.1E-17 88.0 4.8 39 131-169 14-52 (74)
6 2ect_A Ring finger protein 126 99.3 1.1E-12 3.9E-17 87.6 3.7 40 130-169 13-52 (78)
7 2ecl_A Ring-box protein 2; RNF 99.3 1.6E-12 5.5E-17 88.1 3.7 40 131-170 14-65 (81)
8 2ecm_A Ring finger and CHY zin 99.3 4.1E-12 1.4E-16 79.2 4.0 39 131-169 4-43 (55)
9 1v87_A Deltex protein 2; ring- 99.2 7.3E-12 2.5E-16 89.4 4.3 36 132-167 25-75 (114)
10 3dpl_R Ring-box protein 1; ubi 99.2 1.1E-11 3.7E-16 88.5 4.5 39 131-169 36-89 (106)
11 2d8s_A Cellular modulator of i 99.2 9.7E-12 3.3E-16 84.5 3.8 39 130-169 13-56 (80)
12 2ea6_A Ring finger protein 4; 99.1 2.9E-11 9.8E-16 78.4 3.8 40 130-169 13-56 (69)
13 3ng2_A RNF4, snurf, ring finge 99.1 2.7E-11 9.2E-16 79.1 3.3 39 131-169 9-51 (71)
14 2xeu_A Ring finger protein 4; 99.1 2.7E-11 9.3E-16 77.4 2.6 39 131-169 2-44 (64)
15 2ct2_A Tripartite motif protei 99.0 2E-10 6.9E-15 77.8 4.9 39 131-169 14-53 (88)
16 4a0k_B E3 ubiquitin-protein li 99.0 3E-11 1E-15 87.7 0.5 39 131-169 47-100 (117)
17 1chc_A Equine herpes virus-1 r 99.0 1.2E-10 4.2E-15 75.5 3.2 37 131-169 4-40 (68)
18 2ecn_A Ring finger protein 141 99.0 1E-10 3.5E-15 76.4 2.5 35 131-169 14-48 (70)
19 2ysj_A Tripartite motif-contai 98.9 8.3E-10 2.8E-14 70.6 4.7 35 131-168 19-53 (63)
20 2d8t_A Dactylidin, ring finger 98.9 2.6E-10 8.8E-15 74.9 2.3 37 130-169 13-49 (71)
21 2ecj_A Tripartite motif-contai 98.9 9.1E-10 3.1E-14 68.9 3.3 35 131-168 14-48 (58)
22 2djb_A Polycomb group ring fin 98.9 1.3E-09 4.6E-14 71.6 3.9 37 131-169 14-50 (72)
23 4ap4_A E3 ubiquitin ligase RNF 98.9 6E-10 2E-14 80.5 2.4 39 131-169 6-48 (133)
24 2csy_A Zinc finger protein 183 98.8 2.8E-09 9.7E-14 71.4 4.9 36 131-169 14-49 (81)
25 2ct0_A Non-SMC element 1 homol 98.8 2.2E-09 7.6E-14 71.8 3.2 40 128-169 11-50 (74)
26 2ysl_A Tripartite motif-contai 98.8 3.7E-09 1.3E-13 69.2 3.5 34 131-167 19-52 (73)
27 4ap4_A E3 ubiquitin ligase RNF 98.8 3E-09 1E-13 76.7 3.2 41 130-170 70-114 (133)
28 2yur_A Retinoblastoma-binding 98.8 3.8E-09 1.3E-13 69.9 3.3 36 131-169 14-50 (74)
29 1g25_A CDK-activating kinase a 98.8 4E-09 1.4E-13 67.9 3.1 38 132-169 3-42 (65)
30 2ecy_A TNF receptor-associated 98.7 5.1E-09 1.7E-13 67.5 3.2 34 131-167 14-47 (66)
31 3lrq_A E3 ubiquitin-protein li 98.7 6.9E-09 2.4E-13 72.6 3.4 36 132-169 22-57 (100)
32 4ayc_A E3 ubiquitin-protein li 98.7 6.2E-09 2.1E-13 76.8 3.1 35 132-169 53-87 (138)
33 2ecw_A Tripartite motif-contai 98.7 1.9E-08 6.5E-13 67.2 4.3 35 131-168 18-52 (85)
34 2y43_A E3 ubiquitin-protein li 98.6 1.4E-08 4.7E-13 70.6 3.2 36 132-169 22-57 (99)
35 2ecv_A Tripartite motif-contai 98.6 1.9E-08 6.4E-13 67.2 3.5 35 131-168 18-52 (85)
36 1t1h_A Gspef-atpub14, armadill 98.6 3.2E-08 1.1E-12 65.6 4.3 35 131-168 7-41 (78)
37 2ckl_A Polycomb group ring fin 98.6 1.8E-08 6.3E-13 71.1 3.2 36 132-169 15-50 (108)
38 2ckl_B Ubiquitin ligase protei 98.6 2.6E-08 8.8E-13 75.3 3.7 35 132-168 54-88 (165)
39 2egp_A Tripartite motif-contai 98.6 6E-09 2.1E-13 69.1 -0.4 35 131-168 11-45 (79)
40 3fl2_A E3 ubiquitin-protein li 98.5 3.9E-08 1.3E-12 71.0 3.6 34 132-168 52-85 (124)
41 3ztg_A E3 ubiquitin-protein li 98.5 4.8E-08 1.6E-12 66.7 3.7 36 131-169 12-48 (92)
42 3hct_A TNF receptor-associated 98.5 4E-08 1.4E-12 70.5 3.1 36 131-169 17-52 (118)
43 1jm7_A BRCA1, breast cancer ty 98.5 5.9E-08 2E-12 68.4 3.1 35 132-169 21-55 (112)
44 3k1l_B Fancl; UBC, ring, RWD, 98.3 1.7E-07 5.9E-12 79.1 3.1 38 131-168 307-349 (381)
45 1rmd_A RAG1; V(D)J recombinati 98.3 2.8E-07 9.6E-12 65.6 3.8 34 132-168 23-56 (116)
46 3l11_A E3 ubiquitin-protein li 98.3 6.2E-08 2.1E-12 69.0 0.1 34 132-168 15-48 (115)
47 1wim_A KIAA0161 protein; ring 98.3 2.7E-07 9.1E-12 63.5 3.3 38 131-168 4-41 (94)
48 1z6u_A NP95-like ring finger p 98.3 2E-07 6.8E-12 69.9 2.8 35 132-169 78-112 (150)
49 1vyx_A ORF K3, K3RING; zinc-bi 98.3 2.1E-07 7.1E-12 59.5 2.2 36 130-168 4-44 (60)
50 3knv_A TNF receptor-associated 98.3 3.6E-07 1.2E-11 67.9 2.7 36 131-169 30-65 (141)
51 1e4u_A Transcriptional repress 98.2 5.6E-07 1.9E-11 60.4 3.3 38 130-167 9-47 (78)
52 1bor_A Transcription factor PM 98.2 1.1E-07 3.9E-12 59.5 -0.3 32 131-165 5-36 (56)
53 2y1n_A E3 ubiquitin-protein li 98.2 1.1E-06 3.6E-11 75.4 4.4 33 132-167 332-364 (389)
54 2yu4_A E3 SUMO-protein ligase 98.1 2.8E-06 9.6E-11 58.6 3.8 36 131-169 6-42 (94)
55 1jm7_B BARD1, BRCA1-associated 98.0 7.5E-07 2.6E-11 63.6 0.1 33 132-167 22-55 (117)
56 2kr4_A Ubiquitin conjugation f 98.0 6.3E-06 2.2E-10 55.8 3.9 36 131-169 13-48 (85)
57 4ic3_A E3 ubiquitin-protein li 97.9 3.5E-06 1.2E-10 55.5 1.7 31 132-165 24-55 (74)
58 2vje_A E3 ubiquitin-protein li 97.9 6.2E-06 2.1E-10 52.9 2.8 37 131-169 7-45 (64)
59 2kre_A Ubiquitin conjugation f 97.8 9E-06 3.1E-10 56.9 2.8 36 131-169 28-63 (100)
60 1wgm_A Ubiquitin conjugation f 97.8 1.6E-05 5.4E-10 55.4 3.3 36 131-169 21-57 (98)
61 2vje_B MDM4 protein; proto-onc 97.7 1.4E-05 4.8E-10 51.0 2.5 38 131-169 6-44 (63)
62 2c2l_A CHIP, carboxy terminus 97.6 2.8E-05 9.7E-10 62.2 3.4 36 131-169 207-242 (281)
63 2ecg_A Baculoviral IAP repeat- 97.5 5.2E-05 1.8E-09 49.8 2.5 30 132-164 25-55 (75)
64 2ea5_A Cell growth regulator w 97.3 0.00011 3.9E-09 47.5 2.9 32 130-164 13-45 (68)
65 2bay_A PRE-mRNA splicing facto 97.3 9.9E-05 3.4E-09 47.0 2.4 35 133-169 4-38 (61)
66 2f42_A STIP1 homology and U-bo 97.3 0.00016 5.6E-09 55.7 3.5 36 131-169 105-140 (179)
67 3htk_C E3 SUMO-protein ligase 97.2 0.00019 6.6E-09 58.4 3.7 37 131-169 180-216 (267)
68 2yho_A E3 ubiquitin-protein li 97.2 0.0001 3.6E-09 49.1 1.4 31 132-165 18-49 (79)
69 3t6p_A Baculoviral IAP repeat- 97.0 0.00015 5.3E-09 61.1 0.8 32 131-165 294-326 (345)
70 3nw0_A Non-structural maintena 96.6 0.001 3.5E-08 53.3 2.7 37 131-169 179-215 (238)
71 3vk6_A E3 ubiquitin-protein li 95.9 0.0067 2.3E-07 42.3 3.5 34 134-169 3-36 (101)
72 2jun_A Midline-1; B-BOX, TRIM, 94.9 0.012 4.3E-07 40.1 2.3 33 132-164 3-35 (101)
73 1we9_A PHD finger family prote 92.5 0.074 2.5E-06 33.4 2.5 33 131-163 5-38 (64)
74 2lri_C Autoimmune regulator; Z 91.8 0.062 2.1E-06 34.4 1.4 35 131-168 11-45 (66)
75 1wil_A KIAA1045 protein; ring 91.0 0.21 7.2E-06 33.7 3.4 33 131-164 14-46 (89)
76 2vpb_A Hpygo1, pygopus homolog 88.1 0.4 1.4E-05 30.5 3.0 33 131-163 7-41 (65)
77 1wem_A Death associated transc 88.1 0.55 1.9E-05 30.4 3.8 31 132-163 16-46 (76)
78 1f62_A Transcription factor WS 87.0 0.27 9.3E-06 29.3 1.6 31 134-164 2-32 (51)
79 2k16_A Transcription initiatio 86.3 0.41 1.4E-05 30.9 2.3 34 131-164 17-50 (75)
80 1wep_A PHF8; structural genomi 85.4 0.93 3.2E-05 29.5 3.8 31 132-163 12-43 (79)
81 2xb1_A Pygopus homolog 2, B-ce 85.4 0.47 1.6E-05 32.9 2.4 32 132-163 3-36 (105)
82 2yt5_A Metal-response element- 85.0 0.41 1.4E-05 30.0 1.8 34 131-164 5-40 (66)
83 2l5u_A Chromodomain-helicase-D 82.5 0.89 3E-05 28.2 2.6 31 131-164 10-40 (61)
84 2puy_A PHD finger protein 21A; 81.6 0.77 2.6E-05 28.3 2.0 31 131-164 4-34 (60)
85 2ysm_A Myeloid/lymphoid or mix 81.4 0.61 2.1E-05 32.3 1.7 36 131-166 6-41 (111)
86 3o70_A PHD finger protein 13; 81.0 0.8 2.7E-05 29.2 2.0 32 131-163 18-49 (68)
87 1wew_A DNA-binding family prot 80.1 2 6.8E-05 27.9 3.8 31 132-163 16-48 (78)
88 2yql_A PHD finger protein 21A; 80.1 0.76 2.6E-05 28.0 1.6 32 130-164 7-38 (56)
89 2lv9_A Histone-lysine N-methyl 79.1 0.97 3.3E-05 30.8 2.0 32 132-164 28-59 (98)
90 2ku3_A Bromodomain-containing 77.3 2.5 8.4E-05 27.1 3.5 33 131-163 15-49 (71)
91 2kgg_A Histone demethylase jar 77.1 1.1 3.7E-05 26.9 1.6 31 133-163 3-35 (52)
92 1xwh_A Autoimmune regulator; P 76.3 1.1 3.9E-05 28.1 1.6 31 131-164 7-37 (66)
93 1wee_A PHD finger family prote 76.1 1.1 3.7E-05 28.7 1.5 31 132-163 16-47 (72)
94 2l43_A N-teminal domain from h 75.2 2.1 7.1E-05 28.6 2.8 34 131-164 24-59 (88)
95 1mm2_A MI2-beta; PHD, zinc fin 74.9 1.1 3.7E-05 27.8 1.2 31 131-164 8-38 (61)
96 3v43_A Histone acetyltransfera 73.8 2.1 7.3E-05 29.6 2.7 32 132-163 5-42 (112)
97 2e6r_A Jumonji/ARID domain-con 71.6 1.3 4.5E-05 29.8 1.1 33 131-163 15-47 (92)
98 1zfo_A LAsp-1; LIM domain, zin 70.9 1.5 5E-05 23.5 1.0 28 133-162 4-31 (31)
99 2kwj_A Zinc finger protein DPF 70.4 1 3.5E-05 31.5 0.3 34 133-166 2-42 (114)
100 1wev_A Riken cDNA 1110020M19; 69.9 1.2 4.3E-05 29.7 0.6 33 132-164 16-50 (88)
101 2lbm_A Transcriptional regulat 69.2 4.5 0.00015 29.6 3.6 34 130-166 61-94 (142)
102 1fp0_A KAP-1 corepressor; PHD 69.0 1.4 4.8E-05 29.7 0.7 32 130-164 23-54 (88)
103 3ql9_A Transcriptional regulat 68.0 4.2 0.00014 29.3 3.2 33 130-165 55-87 (129)
104 1weu_A Inhibitor of growth fam 64.5 2.8 9.7E-05 28.3 1.6 31 131-163 35-68 (91)
105 2e6s_A E3 ubiquitin-protein li 64.2 1.5 5E-05 28.7 0.1 32 133-164 27-58 (77)
106 3asl_A E3 ubiquitin-protein li 61.4 1.6 5.5E-05 27.9 -0.1 31 134-164 20-50 (70)
107 2kwj_A Zinc finger protein DPF 59.2 2.1 7.3E-05 29.8 0.2 32 133-164 59-90 (114)
108 1wen_A Inhibitor of growth fam 59.1 5 0.00017 25.6 2.0 30 132-163 16-48 (71)
109 3o7a_A PHD finger protein 13 v 58.1 3.2 0.00011 24.6 0.9 27 137-163 8-34 (52)
110 2ysm_A Myeloid/lymphoid or mix 55.9 3.1 0.00011 28.5 0.6 31 134-164 56-86 (111)
111 3kv5_D JMJC domain-containing 54.3 6.3 0.00021 34.4 2.4 30 133-163 38-68 (488)
112 3mjh_B Early endosome antigen 54.0 2.5 8.6E-05 23.4 -0.1 17 131-147 4-20 (34)
113 3v43_A Histone acetyltransfera 53.0 3.7 0.00013 28.4 0.6 32 133-164 62-94 (112)
114 4gne_A Histone-lysine N-methyl 51.8 7.7 0.00026 26.9 2.1 31 130-163 13-45 (107)
115 3kqi_A GRC5, PHD finger protei 50.9 9 0.00031 24.4 2.2 30 134-163 11-41 (75)
116 1iml_A CRIP, cysteine rich int 50.4 4.4 0.00015 25.4 0.6 26 134-161 2-27 (76)
117 2co8_A NEDD9 interacting prote 50.2 8.3 0.00029 24.6 2.0 29 132-162 15-43 (82)
118 2cu8_A Cysteine-rich protein 2 49.0 10 0.00036 23.6 2.3 27 133-161 10-36 (76)
119 3shb_A E3 ubiquitin-protein li 47.3 3 0.0001 27.2 -0.6 31 134-164 28-58 (77)
120 2dj7_A Actin-binding LIM prote 47.3 8.7 0.0003 24.5 1.7 29 132-162 15-43 (80)
121 2jmi_A Protein YNG1, ING1 homo 47.0 7.4 0.00025 26.1 1.3 31 131-163 25-58 (90)
122 3ask_A E3 ubiquitin-protein li 44.9 5.8 0.0002 31.2 0.6 32 133-164 175-206 (226)
123 3c6w_A P28ING5, inhibitor of g 43.8 6.3 0.00022 24.1 0.5 30 132-163 9-41 (59)
124 2vnf_A ING 4, P29ING4, inhibit 42.2 6.9 0.00024 24.0 0.5 30 132-163 10-42 (60)
125 3t7l_A Zinc finger FYVE domain 41.0 15 0.00053 24.2 2.2 33 131-163 19-52 (90)
126 2yw8_A RUN and FYVE domain-con 40.0 20 0.00068 23.2 2.6 33 131-163 18-51 (82)
127 1z2q_A LM5-1; membrane protein 39.8 22 0.00075 23.1 2.8 34 130-163 19-53 (84)
128 1zbd_B Rabphilin-3A; G protein 38.4 15 0.00051 26.3 1.9 32 131-162 54-87 (134)
129 2rsd_A E3 SUMO-protein ligase 36.9 12 0.00042 23.3 1.1 29 133-162 11-41 (68)
130 1wyh_A SLIM 2, skeletal muscle 36.2 17 0.00058 22.1 1.7 11 134-144 7-17 (72)
131 1wfk_A Zinc finger, FYVE domai 36.0 31 0.0011 22.7 3.1 33 131-163 8-41 (88)
132 1joc_A EEA1, early endosomal a 36.0 20 0.00067 25.2 2.2 33 131-163 68-101 (125)
133 1x63_A Skeletal muscle LIM-pro 34.1 23 0.00079 22.1 2.2 29 133-162 16-44 (82)
134 1x4u_A Zinc finger, FYVE domai 34.1 31 0.0011 22.3 2.8 34 130-163 12-46 (84)
135 3f6q_B LIM and senescent cell 33.2 19 0.00064 21.7 1.5 30 132-162 11-40 (72)
136 2d8y_A Eplin protein; LIM doma 33.2 22 0.00076 22.9 2.0 29 132-162 15-43 (91)
137 1a7i_A QCRP2 (LIM1); LIM domai 32.5 16 0.00055 22.9 1.2 27 133-161 8-34 (81)
138 2g6q_A Inhibitor of growth pro 32.3 12 0.00042 23.0 0.5 30 132-163 11-43 (62)
139 1dvp_A HRS, hepatocyte growth 31.9 22 0.00076 27.1 2.1 33 131-163 160-193 (220)
140 1vfy_A Phosphatidylinositol-3- 31.8 32 0.0011 21.6 2.5 32 132-163 11-43 (73)
141 3zyq_A Hepatocyte growth facto 31.3 23 0.00078 27.3 2.1 33 131-163 163-196 (226)
142 1x4k_A Skeletal muscle LIM-pro 31.1 24 0.0008 21.4 1.8 11 134-144 7-17 (72)
143 2cs3_A Protein C14ORF4, MY039 31.0 93 0.0032 20.6 4.6 37 131-168 14-52 (93)
144 2l3k_A Rhombotin-2, linker, LI 30.6 19 0.00064 24.8 1.3 33 132-165 36-68 (123)
145 3fyb_A Protein of unknown func 30.5 20 0.0007 24.6 1.4 12 157-168 42-53 (104)
146 1x61_A Thyroid receptor intera 30.3 28 0.00097 21.1 2.1 34 132-167 33-66 (72)
147 2o35_A Hypothetical protein DU 30.3 21 0.0007 24.6 1.4 12 157-168 43-54 (105)
148 2d8x_A Protein pinch; LIM doma 29.7 25 0.00087 21.2 1.7 14 132-145 31-44 (70)
149 2cup_A Skeletal muscle LIM-pro 29.1 29 0.001 22.5 2.1 30 132-162 66-95 (101)
150 1x4i_A Inhibitor of growth pro 29.1 45 0.0016 20.9 2.9 30 132-163 6-38 (70)
151 1x6a_A LIMK-2, LIM domain kina 29.0 19 0.00064 22.6 1.0 35 132-166 41-75 (81)
152 3a1b_A DNA (cytosine-5)-methyl 27.4 58 0.002 24.1 3.6 35 131-168 78-114 (159)
153 1nyp_A Pinch protein; LIM doma 27.3 15 0.00053 22.0 0.3 12 133-144 32-43 (66)
154 1g47_A Pinch protein; LIM doma 26.4 35 0.0012 20.9 2.0 29 132-161 11-39 (77)
155 1v6g_A Actin binding LIM prote 25.6 26 0.00088 21.9 1.2 10 134-143 17-26 (81)
156 1x68_A FHL5 protein; four-and- 25.4 36 0.0012 20.9 1.9 10 134-143 7-16 (76)
157 1x4l_A Skeletal muscle LIM-pro 25.3 38 0.0013 20.5 2.0 10 134-143 7-16 (72)
158 2dar_A PDZ and LIM domain prot 25.2 33 0.0011 21.9 1.8 26 133-161 26-51 (90)
159 2cor_A Pinch protein; LIM doma 24.9 38 0.0013 21.2 2.0 26 133-161 16-41 (79)
160 2d8v_A Zinc finger FYVE domain 24.4 53 0.0018 20.8 2.4 29 131-163 7-36 (67)
161 2d8z_A Four and A half LIM dom 23.8 33 0.0011 20.6 1.5 11 133-143 32-42 (70)
162 1m3v_A FLIN4, fusion of the LI 23.5 56 0.0019 22.2 2.8 28 133-162 6-33 (122)
163 4bbq_A Lysine-specific demethy 23.1 24 0.00083 24.0 0.8 30 134-163 61-91 (117)
164 2q23_A Protein alpha; virus li 22.7 25 0.00085 29.2 0.8 29 32-60 34-64 (407)
165 2lq6_A Bromodomain-containing 22.4 40 0.0014 22.1 1.7 32 132-164 17-50 (87)
166 2zet_C Melanophilin; complex, 22.0 41 0.0014 24.5 1.9 32 131-162 67-100 (153)
167 4fbl_A LIPS lipolytic enzyme; 21.5 51 0.0018 24.9 2.5 23 147-169 250-281 (281)
168 1y02_A CARP2, FYVE-ring finger 21.5 47 0.0016 23.3 2.0 33 131-163 18-51 (120)
169 2cur_A Skeletal muscle LIM-pro 21.4 37 0.0013 20.4 1.3 12 132-143 31-42 (69)
170 4ftb_A Capsid protein beta; no 20.6 22 0.00074 29.2 0.1 29 32-60 34-64 (363)
171 3mpx_A FYVE, rhogef and PH dom 20.2 22 0.00075 29.6 0.0 36 131-166 374-410 (434)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.63 E-value=3.3e-16 Score=108.65 Aligned_cols=65 Identities=23% Similarity=0.597 Sum_probs=56.8
Q ss_pred cCCCCCCHHHHHcCCceEeccCCC-CCCCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 105 AKPRGLNRYEIESIPSFKFNASKH-QSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 105 ~~~~gls~~~i~~lp~~~~~~~~~-~~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
...+|++++.|++||...+..... ..+...|+||+++|..++.+..|||||.||..||..||+.+
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~ 77 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS 77 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT
T ss_pred cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC
Confidence 446899999999999999876543 34567899999999999999999999999999999999875
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-16 Score=105.13 Aligned_cols=57 Identities=65% Similarity=1.237 Sum_probs=50.4
Q ss_pred HHHHcCCceEeccCCCCCCCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 113 YEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 113 ~~i~~lp~~~~~~~~~~~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+.++++|..+++......+...|+||+++|..++.+..|||+|.||..||.+||+.+
T Consensus 4 ~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~ 60 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN 60 (75)
T ss_dssp CCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC
T ss_pred hhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC
Confidence 346789999998766666778999999999999999999999999999999999875
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=5.1e-13 Score=87.27 Aligned_cols=40 Identities=38% Similarity=0.921 Sum_probs=36.5
Q ss_pred CCCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
.....|+||++.|..++.+..+||||.||..||..||+.+
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~ 51 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN 51 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 3467899999999999999999999999999999999875
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.36 E-value=2.2e-13 Score=85.13 Aligned_cols=39 Identities=46% Similarity=1.007 Sum_probs=35.9
Q ss_pred CCCCCccccccccCCCeeeEec-CCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LP-C~H~FH~~CI~~WL~~~ 169 (170)
++..|+||+++|..++.+..+| |||.||.+||.+|++.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~ 43 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH 43 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC
Confidence 4668999999999999999998 99999999999999865
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.2e-13 Score=88.02 Aligned_cols=39 Identities=41% Similarity=0.898 Sum_probs=36.2
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+...|+||+++|..++.+..|||+|.||..||..||+.+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~ 52 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR 52 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC
Confidence 467899999999999999999999999999999999875
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.30 E-value=1.1e-12 Score=87.60 Aligned_cols=40 Identities=35% Similarity=0.844 Sum_probs=36.4
Q ss_pred CCCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
.+...|+||++.|..++.+..|||+|.||..||..||+.+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~ 52 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH 52 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC
Confidence 3467999999999999999999999999999999999865
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.6e-12 Score=88.12 Aligned_cols=40 Identities=23% Similarity=0.657 Sum_probs=32.0
Q ss_pred CCCCCccccccccC-----------CCeeeEec-CCCcchHHhHHHHHHhCC
Q psy9087 131 DQTSCVVCMCDFET-----------SQVLRGLP-CSHEFHAKCVDKWLKIGT 170 (170)
Q Consensus 131 ~~~~C~ICle~f~~-----------g~~v~~LP-C~H~FH~~CI~~WL~~~~ 170 (170)
+++.|+||+++|++ ++.+..++ |+|.||.+||.+||+.++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~ 65 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN 65 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC
Confidence 35678888888854 55677776 999999999999998763
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.25 E-value=4.1e-12 Score=79.16 Aligned_cols=39 Identities=38% Similarity=0.801 Sum_probs=33.6
Q ss_pred CCCCCccccccccCC-CeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETS-QVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g-~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+...|+||+++|..+ +.+..+||+|.||.+||..||+.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 43 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG 43 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC
Confidence 467899999999664 457888999999999999999864
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.22 E-value=7.3e-12 Score=89.39 Aligned_cols=36 Identities=31% Similarity=0.633 Sum_probs=30.6
Q ss_pred CCCCccccccccCCC---------------eeeEecCCCcchHHhHHHHHH
Q psy9087 132 QTSCVVCMCDFETSQ---------------VLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 132 ~~~C~ICle~f~~g~---------------~v~~LPC~H~FH~~CI~~WL~ 167 (170)
++.|+|||++|..+. .+..++|+|.||..||..||.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~ 75 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYC 75 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHH
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHH
Confidence 468999999997653 345788999999999999995
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.20 E-value=1.1e-11 Score=88.53 Aligned_cols=39 Identities=26% Similarity=0.619 Sum_probs=33.1
Q ss_pred CCCCCccccccccCC---------------CeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETS---------------QVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g---------------~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+++.|+||+++|+.. ..+..++|+|.||..||.+||+.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~ 89 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR 89 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC
Confidence 467899999999864 136778999999999999999875
No 11
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=9.7e-12 Score=84.48 Aligned_cols=39 Identities=33% Similarity=0.819 Sum_probs=34.0
Q ss_pred CCCCCCccccccccCCCeeeEecCC-----CcchHHhHHHHHHhC
Q psy9087 130 SDQTSCVVCMCDFETSQVLRGLPCS-----HEFHAKCVDKWLKIG 169 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v~~LPC~-----H~FH~~CI~~WL~~~ 169 (170)
.++..|.||+++|+.++.+ .+||+ |.||.+||++||..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~ 56 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSS 56 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHH
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhC
Confidence 3467899999999988877 58996 999999999999864
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.9e-11 Score=78.36 Aligned_cols=40 Identities=28% Similarity=0.629 Sum_probs=33.6
Q ss_pred CCCCCCccccccccCC----CeeeEecCCCcchHHhHHHHHHhC
Q psy9087 130 SDQTSCVVCMCDFETS----QVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g----~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
.+...|+||++.|.+. +.+..++|||.||..||..||+.+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 56 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA 56 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC
Confidence 3467899999999753 456789999999999999999864
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.12 E-value=2.7e-11 Score=79.11 Aligned_cols=39 Identities=26% Similarity=0.646 Sum_probs=33.6
Q ss_pred CCCCCccccccccC----CCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFET----SQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~----g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++.|.+ ++.+..++|||.||..||..|++.+
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 51 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA 51 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC
Confidence 46789999999965 4566889999999999999999865
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.10 E-value=2.7e-11 Score=77.35 Aligned_cols=39 Identities=26% Similarity=0.634 Sum_probs=33.3
Q ss_pred CCCCCccccccccC----CCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFET----SQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~----g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++.|.+ ++.+..++|||.||.+||..|++.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 44 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA 44 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC
Confidence 45689999999975 3556789999999999999999864
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=2e-10 Score=77.81 Aligned_cols=39 Identities=28% Similarity=0.647 Sum_probs=34.4
Q ss_pred CCCCCccccccccCCCe-eeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQV-LRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~-v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++.|.+++. ...++|||.||..||..|++.+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~ 53 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS 53 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC
Confidence 46789999999988775 7788999999999999999864
No 16
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.03 E-value=3e-11 Score=87.71 Aligned_cols=39 Identities=28% Similarity=0.675 Sum_probs=1.1
Q ss_pred CCCCCccccccccC-------------CCe--eeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFET-------------SQV--LRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~-------------g~~--v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+++.|+||+++|++ ++. +..++|+|.||..||.+||+.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~ 100 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR 100 (117)
T ss_dssp CC----------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC
Confidence 46799999999976 232 3345899999999999999875
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.02 E-value=1.2e-10 Score=75.48 Aligned_cols=37 Identities=27% Similarity=0.741 Sum_probs=31.7
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
.+..|+||++.+.+ .+..+||||.||..||..|++.+
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~ 40 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQN 40 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHS
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCc
Confidence 35689999999864 45788999999999999999865
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1e-10 Score=76.38 Aligned_cols=35 Identities=40% Similarity=0.898 Sum_probs=30.9
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++.|.+ ..+||||.||..||..|++.+
T Consensus 14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~ 48 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRH 48 (70)
T ss_dssp CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCC
T ss_pred CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCc
Confidence 46789999999877 678999999999999998753
No 19
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=8.3e-10 Score=70.59 Aligned_cols=35 Identities=20% Similarity=0.574 Sum_probs=30.2
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
+...|+||++.|.+ ...+||||.||..||..|++.
T Consensus 19 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 19 EEVICPICLDILQK---PVTIDCGHNFCLKCITQIGET 53 (63)
T ss_dssp CCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHH
T ss_pred cCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHc
Confidence 46789999999875 445799999999999999984
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2.6e-10 Score=74.86 Aligned_cols=37 Identities=27% Similarity=0.538 Sum_probs=31.1
Q ss_pred CCCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
.+...|+||++.|.+ ...+||||.||..||..|+..+
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~ 49 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLG 49 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCS
T ss_pred CCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCC
Confidence 346789999999855 3567999999999999999764
No 21
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=9.1e-10 Score=68.94 Aligned_cols=35 Identities=26% Similarity=0.716 Sum_probs=29.7
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
+...|+||++.|.+. ..++|||.||..||..|+..
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~ 48 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP---VIIECGHNFCKACITRWWED 48 (58)
T ss_dssp CCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTS
T ss_pred cCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHh
Confidence 467899999999764 45899999999999999753
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.3e-09 Score=71.56 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=30.5
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++.|.+ .+..++|||.||..||..||+.+
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~ 50 (72)
T 2djb_A 14 PYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYS 50 (72)
T ss_dssp GGGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHC
T ss_pred CCCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcC
Confidence 36789999999876 34445999999999999999754
No 23
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.87 E-value=6e-10 Score=80.50 Aligned_cols=39 Identities=26% Similarity=0.646 Sum_probs=33.6
Q ss_pred CCCCCccccccccC----CCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFET----SQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~----g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++.|.+ ++.+..++|||.||.+||..||+.+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 48 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA 48 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC
Confidence 45689999999965 3566889999999999999999875
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=2.8e-09 Score=71.45 Aligned_cols=36 Identities=19% Similarity=0.430 Sum_probs=30.4
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++.|.+ ...+||||.||..||..|++.+
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~ 49 (81)
T 2csy_A 14 IPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRAT 49 (81)
T ss_dssp CCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHC
T ss_pred CCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCC
Confidence 45689999999965 3468999999999999999753
No 25
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=2.2e-09 Score=71.78 Aligned_cols=40 Identities=20% Similarity=0.448 Sum_probs=33.6
Q ss_pred CCCCCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 128 HQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 128 ~~~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+....+.|+||.+.|..++... .|+|.||..||.+||+.+
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~ 50 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSN 50 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTC
T ss_pred ccCCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhc
Confidence 3445679999999999876554 899999999999999875
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=3.7e-09 Score=69.23 Aligned_cols=34 Identities=21% Similarity=0.597 Sum_probs=29.4
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~ 167 (170)
+...|+||++.|.+ ...+||||.||..||..|++
T Consensus 19 ~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 19 EEVICPICLDILQK---PVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCS
T ss_pred cCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHH
Confidence 46789999999874 44579999999999999996
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.77 E-value=3e-09 Score=76.72 Aligned_cols=41 Identities=27% Similarity=0.636 Sum_probs=34.0
Q ss_pred CCCCCCccccccccC----CCeeeEecCCCcchHHhHHHHHHhCC
Q psy9087 130 SDQTSCVVCMCDFET----SQVLRGLPCSHEFHAKCVDKWLKIGT 170 (170)
Q Consensus 130 ~~~~~C~ICle~f~~----g~~v~~LPC~H~FH~~CI~~WL~~~~ 170 (170)
.+...|+||++.|.. +..+..++|||.||..||++||+.++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~ 114 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN 114 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC
Confidence 346789999999975 34557889999999999999998753
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.77 E-value=3.8e-09 Score=69.86 Aligned_cols=36 Identities=19% Similarity=0.522 Sum_probs=30.6
Q ss_pred CCCCCccccccccCCCeeeEec-CCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LP-C~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++.|.+ ...+| |||.||..||..||+.+
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~ 50 (74)
T 2yur_A 14 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLES 50 (74)
T ss_dssp GGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHS
T ss_pred CCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhc
Confidence 35789999999975 34589 99999999999999864
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=4e-09 Score=67.85 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=30.6
Q ss_pred CCCCccccc-cccCCCe-eeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMC-DFETSQV-LRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle-~f~~g~~-v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+..|+||++ .|..... +..++|||.||..||..|+.++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~ 42 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG 42 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC
Confidence 568999999 7766544 3457999999999999998653
No 30
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=5.1e-09 Score=67.54 Aligned_cols=34 Identities=24% Similarity=0.565 Sum_probs=28.8
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~ 167 (170)
+...|+||++.|.+.. .++|||.||..||..|++
T Consensus 14 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLS 47 (66)
T ss_dssp CCEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHT
T ss_pred cCCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHH
Confidence 4578999999987542 379999999999999995
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.71 E-value=6.9e-09 Score=72.55 Aligned_cols=36 Identities=22% Similarity=0.516 Sum_probs=30.7
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
...|+||++.|.+ .+..++|||.||..||..|++.+
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~ 57 (100)
T 3lrq_A 22 VFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQ 57 (100)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHT
T ss_pred CCCCccCCccccC--ccccCCCCChhhHHHHHHHHHHC
Confidence 4689999999964 44448999999999999999875
No 32
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.70 E-value=6.2e-09 Score=76.82 Aligned_cols=35 Identities=29% Similarity=0.798 Sum_probs=30.1
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+..|+||++.|.+ ...+||||.||..||..|+..+
T Consensus 53 ~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~ 87 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRK 87 (138)
T ss_dssp HSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTC
T ss_pred cCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcC
Confidence 4579999999865 4578999999999999999865
No 33
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.66 E-value=1.9e-08 Score=67.20 Aligned_cols=35 Identities=17% Similarity=0.549 Sum_probs=30.3
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
+...|+||++.|.+. ..+||||.||..||..|+..
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecw_A 18 EEVTCPICLELLKEP---VSADCNHSFCRACITLNYES 52 (85)
T ss_dssp TTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHH
T ss_pred cCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHh
Confidence 467899999998653 36899999999999999987
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.64 E-value=1.4e-08 Score=70.56 Aligned_cols=36 Identities=25% Similarity=0.585 Sum_probs=29.7
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
...|+||++.|.+ .+..++|||.||..||..|+..+
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~ 57 (99)
T 2y43_A 22 LLRCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLSYK 57 (99)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHTTC
T ss_pred CCCcccCChhhCC--cCEECCCCCHhhHHHHHHHHHCC
Confidence 4589999999875 34334899999999999999864
No 35
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.9e-08 Score=67.22 Aligned_cols=35 Identities=23% Similarity=0.561 Sum_probs=30.0
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
+...|+||++.|.+ ...+||||.||..||..|+..
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecv_A 18 EEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKK 52 (85)
T ss_dssp CCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHH
T ss_pred CCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHH
Confidence 46789999999865 345799999999999999986
No 36
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.62 E-value=3.2e-08 Score=65.61 Aligned_cols=35 Identities=11% Similarity=0.332 Sum_probs=30.0
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
+...|+||++.|.+ -..++|||.|+..||..||+.
T Consensus 7 ~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~ 41 (78)
T 1t1h_A 7 EYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDA 41 (78)
T ss_dssp SSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTT
T ss_pred ccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHH
Confidence 46789999999865 345799999999999999975
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.61 E-value=1.8e-08 Score=71.05 Aligned_cols=36 Identities=25% Similarity=0.589 Sum_probs=30.1
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
...|+||++.|.+ .+..++|||.||..||..|+..+
T Consensus 15 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~ 50 (108)
T 2ckl_A 15 HLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETS 50 (108)
T ss_dssp GTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSC
T ss_pred cCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhC
Confidence 5689999999864 44445999999999999999754
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.59 E-value=2.6e-08 Score=75.34 Aligned_cols=35 Identities=23% Similarity=0.563 Sum_probs=30.0
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
...|+||++.|.+ .+..+||||.||..||..||..
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKECLHRFCADCIITALRS 88 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHT
T ss_pred CCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHh
Confidence 4589999999875 4555599999999999999986
No 39
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.56 E-value=6e-09 Score=69.11 Aligned_cols=35 Identities=20% Similarity=0.495 Sum_probs=29.9
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
+...|+||++.|.+ ...+||||.||..||..|++.
T Consensus 11 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 11 EEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKE 45 (79)
T ss_dssp CCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCC
T ss_pred cCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHh
Confidence 46789999999865 334799999999999999975
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.55 E-value=3.9e-08 Score=70.98 Aligned_cols=34 Identities=18% Similarity=0.413 Sum_probs=29.3
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
...|+||++.|.+ ...+||||.||..||..|+..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~ 85 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRA 85 (124)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHT
T ss_pred CCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhH
Confidence 4689999999884 345799999999999999974
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.54 E-value=4.8e-08 Score=66.74 Aligned_cols=36 Identities=19% Similarity=0.522 Sum_probs=30.6
Q ss_pred CCCCCccccccccCCCeeeEec-CCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LP-C~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++.|.+ -..+| |||.|+..||..|+..+
T Consensus 12 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~ 48 (92)
T 3ztg_A 12 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLES 48 (92)
T ss_dssp TTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHC
T ss_pred cCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhc
Confidence 46789999999874 34789 99999999999999753
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.53 E-value=4e-08 Score=70.46 Aligned_cols=36 Identities=22% Similarity=0.639 Sum_probs=30.5
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++.|.+. ..++|||.|+..||..|++.+
T Consensus 17 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~ 52 (118)
T 3hct_A 17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDA 52 (118)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHH
T ss_pred CCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhC
Confidence 456899999998753 457999999999999999864
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.49 E-value=5.9e-08 Score=68.39 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=29.2
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
...|+||++.|.+. ..+||||.||..||..|+..+
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~ 55 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQK 55 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSS
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhC
Confidence 45799999998653 347999999999999999864
No 44
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.35 E-value=1.7e-07 Score=79.12 Aligned_cols=38 Identities=21% Similarity=0.604 Sum_probs=30.8
Q ss_pred CCCCCccccccccCCCeee-----EecCCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFETSQVLR-----GLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~-----~LPC~H~FH~~CI~~WL~~ 168 (170)
...+|+||++.+.++..+- ..+|+|.||..||.+||+.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs 349 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKT 349 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHH
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHh
Confidence 4678999999998744332 3469999999999999975
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.35 E-value=2.8e-07 Score=65.60 Aligned_cols=34 Identities=26% Similarity=0.547 Sum_probs=29.1
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
...|+||++.|.+ ...++|||.||..||..|+..
T Consensus 23 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETSCKHLFCRICILRCLKV 56 (116)
T ss_dssp HTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHH
T ss_pred CCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhH
Confidence 4589999999865 334899999999999999986
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.34 E-value=6.2e-08 Score=68.96 Aligned_cols=34 Identities=24% Similarity=0.549 Sum_probs=29.2
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
+..|+||++.|.+ ...|||||.||..||..|+..
T Consensus 15 ~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~ 48 (115)
T 3l11_A 15 ECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEK 48 (115)
T ss_dssp HHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCT
T ss_pred CCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhH
Confidence 5689999999874 456799999999999999865
No 47
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.33 E-value=2.7e-07 Score=63.53 Aligned_cols=38 Identities=16% Similarity=0.593 Sum_probs=32.5
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
+..+|+||+++|...+.+...+|||.|..+|+..|+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~ 41 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVEL 41 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHH
Confidence 35689999999987776666689999999999999874
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.33 E-value=2e-07 Score=69.88 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=29.6
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
...|+||++.|.+ ...+||||.|+..||..|+..+
T Consensus 78 ~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~ 112 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQ 112 (150)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTT
T ss_pred CCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhC
Confidence 4689999999865 3348999999999999999853
No 49
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.32 E-value=2.1e-07 Score=59.55 Aligned_cols=36 Identities=25% Similarity=0.636 Sum_probs=28.2
Q ss_pred CCCCCCccccccccCCCeeeEecCC--C---cchHHhHHHHHHh
Q psy9087 130 SDQTSCVVCMCDFETSQVLRGLPCS--H---EFHAKCVDKWLKI 168 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v~~LPC~--H---~FH~~CI~~WL~~ 168 (170)
.+...|.||+++. ++.+ .+||. | .||.+||.+||..
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~ 44 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTI 44 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHh
Confidence 3467899999983 4444 58955 4 9999999999975
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.26 E-value=3.6e-07 Score=67.86 Aligned_cols=36 Identities=19% Similarity=0.464 Sum_probs=30.5
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++.|.+- ..++|||.|+..||..|++.+
T Consensus 30 ~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~ 65 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSG 65 (141)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGS
T ss_pred cCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcC
Confidence 466899999998764 457999999999999999754
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.25 E-value=5.6e-07 Score=60.38 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=29.0
Q ss_pred CCCCCCccccccccCCCee-eEecCCCcchHHhHHHHHH
Q psy9087 130 SDQTSCVVCMCDFETSQVL-RGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v-~~LPC~H~FH~~CI~~WL~ 167 (170)
.++..|+||++.+...+.. ..++|||.|+..||..|+.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~ 47 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT 47 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHh
Confidence 3467899999998654432 2245999999999999874
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.24 E-value=1.1e-07 Score=59.49 Aligned_cols=32 Identities=22% Similarity=0.556 Sum_probs=27.0
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKW 165 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~W 165 (170)
+...|+||++.|.+ ...|||||.|+..||..|
T Consensus 5 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~ 36 (56)
T 1bor_A 5 QFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS 36 (56)
T ss_dssp CCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS
T ss_pred cCCCceEeCCccCC---eEEcCCCCcccHHHHccC
Confidence 46789999999975 367899999999999764
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.18 E-value=1.1e-06 Score=75.42 Aligned_cols=33 Identities=21% Similarity=0.637 Sum_probs=29.2
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~ 167 (170)
...|+||++.+.+ ...+||||.||..||..|+.
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~ 364 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQE 364 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHH
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHh
Confidence 4689999999854 67799999999999999998
No 54
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.06 E-value=2.8e-06 Score=58.57 Aligned_cols=36 Identities=8% Similarity=0.290 Sum_probs=29.9
Q ss_pred CCCCCccccccccCCCeeeEec-CCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LP-C~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++-|.+ . ..+| |||.|-..||..||..+
T Consensus 6 ~~~~CPI~~~~~~d--P-V~~~~cGh~f~r~cI~~~l~~~ 42 (94)
T 2yu4_A 6 SGFTCPITKEEMKK--P-VKNKVCGHTYEEDAIVRMIESR 42 (94)
T ss_dssp SCCBCTTTCSBCSS--E-EEESSSCCEEEHHHHHHHHHHH
T ss_pred cEeECcCcCchhcC--C-EEcCCCCCeecHHHHHHHHHHc
Confidence 35789999999875 3 4565 99999999999999863
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.02 E-value=7.5e-07 Score=63.63 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=27.8
Q ss_pred CCCCccccccccCCCeeeEe-cCCCcchHHhHHHHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGL-PCSHEFHAKCVDKWLK 167 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~L-PC~H~FH~~CI~~WL~ 167 (170)
...|+||++.|.+ ...+ +|||.|+..||..|+.
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT
T ss_pred CCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc
Confidence 4689999999864 3455 8999999999999985
No 56
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.96 E-value=6.3e-06 Score=55.83 Aligned_cols=36 Identities=11% Similarity=-0.003 Sum_probs=30.6
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++-|.+ -..++|||.|-..||..||..+
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~ 48 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNS 48 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHC
T ss_pred hheECcccCchhcC---CeECCCCCEECHHHHHHHHhcC
Confidence 36789999999876 4468899999999999999854
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.90 E-value=3.5e-06 Score=55.53 Aligned_cols=31 Identities=23% Similarity=0.524 Sum_probs=26.5
Q ss_pred CCCCccccccccCCCeeeEecCCCc-chHHhHHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHE-FHAKCVDKW 165 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~-FH~~CI~~W 165 (170)
...|+||++.+.+ ...+||||. |...|+..|
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV 55 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC
Confidence 4589999998754 567899999 999999988
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.89 E-value=6.2e-06 Score=52.91 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=28.4
Q ss_pred CCCCCccccccccCCCeee-EecCCCc-chHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLR-GLPCSHE-FHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~-~LPC~H~-FH~~CI~~WL~~~ 169 (170)
++..|.||++.+.+. +. .+||||. |-.+|+..|.+.+
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~ 45 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKKRN 45 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHHTT
T ss_pred CcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHHcC
Confidence 466899999986542 22 2499999 6799999999754
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.81 E-value=9e-06 Score=56.87 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=30.3
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++-|.+ -..+||||.|-..||..||..+
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~ 63 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNS 63 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSC
T ss_pred HhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcC
Confidence 46789999998876 4468899999999999999743
No 60
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.76 E-value=1.6e-05 Score=55.40 Aligned_cols=36 Identities=14% Similarity=0.008 Sum_probs=30.3
Q ss_pred CCCCCccccccccCCCeeeEecCC-CcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCS-HEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~-H~FH~~CI~~WL~~~ 169 (170)
+...|+||++-|.+ -..++|| |.|-..||..||..+
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~ 57 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSD 57 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTS
T ss_pred HhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhC
Confidence 36789999999776 3458999 999999999999753
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.73 E-value=1.4e-05 Score=51.05 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=28.4
Q ss_pred CCCCCccccccccCCCeeeEecCCCc-chHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHE-FHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~-FH~~CI~~WL~~~ 169 (170)
....|.||++.+.+. .+..+||||. |-..|+..|.+.+
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~ 44 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKAG 44 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHTT
T ss_pred cCCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHhC
Confidence 356899999975442 1223499998 9999999998653
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.63 E-value=2.8e-05 Score=62.17 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=30.5
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++-|.+ -..+||||.|...||..||..+
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~ 242 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRV 242 (281)
T ss_dssp STTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHT
T ss_pred cccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHC
Confidence 46789999999865 3468899999999999999864
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=5.2e-05 Score=49.79 Aligned_cols=30 Identities=23% Similarity=0.571 Sum_probs=24.7
Q ss_pred CCCCccccccccCCCeeeEecCCCc-chHHhHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHE-FHAKCVDK 164 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~-FH~~CI~~ 164 (170)
...|+||++.+.+ ...+||||. |...|+..
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~ 55 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA 55 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC
Confidence 3479999998754 556899999 99999964
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.00011 Score=47.54 Aligned_cols=32 Identities=31% Similarity=0.636 Sum_probs=26.2
Q ss_pred CCCCCCccccccccCCCeeeEecCCCc-chHHhHHH
Q psy9087 130 SDQTSCVVCMCDFETSQVLRGLPCSHE-FHAKCVDK 164 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v~~LPC~H~-FH~~CI~~ 164 (170)
.+...|.||++.+.+ +..+||||. |...|+..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~ 45 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY 45 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH
T ss_pred CCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc
Confidence 346789999997643 778999999 99999873
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.32 E-value=9.9e-05 Score=46.96 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=29.1
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
..|+||++-+++ .|...+|||.|-..||.+||+.+
T Consensus 4 ~~CpIs~~~m~d--PV~~~~sG~~yer~~I~~~l~~~ 38 (61)
T 2bay_A 4 MLCAISGKVPRR--PVLSPKSRTIFEKSLLEQYVKDT 38 (61)
T ss_dssp CCCTTTCSCCSS--EEEETTTTEEEEHHHHHHHHHHH
T ss_pred EEecCCCCCCCC--CEEeCCCCcEEcHHHHHHHHHhC
Confidence 579999999884 44433899999999999999864
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.28 E-value=0.00016 Score=55.67 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=30.4
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
+...|+||++-|.+ -..+||||.|-..||..||..+
T Consensus 105 ~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~ 140 (179)
T 2f42_A 105 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRV 140 (179)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHT
T ss_pred HhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhC
Confidence 36789999999875 3456999999999999999864
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.00019 Score=58.42 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=31.1
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
....|+||++-|. +.|+.+.|||.|-..||..|+..+
T Consensus 180 ~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~~ 216 (267)
T 3htk_C 180 IELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGY 216 (267)
T ss_dssp CCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTTC
T ss_pred eeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHhC
Confidence 3568999999984 467667899999999999999753
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.19 E-value=0.0001 Score=49.11 Aligned_cols=31 Identities=23% Similarity=0.477 Sum_probs=25.8
Q ss_pred CCCCccccccccCCCeeeEecCCCc-chHHhHHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHE-FHAKCVDKW 165 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~-FH~~CI~~W 165 (170)
...|.||++.+.+ +..+||||. |-..|+..|
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~ 49 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL 49 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc
Confidence 4579999998654 677899999 999999876
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.98 E-value=0.00015 Score=61.09 Aligned_cols=32 Identities=25% Similarity=0.604 Sum_probs=27.2
Q ss_pred CCCCCccccccccCCCeeeEecCCCc-chHHhHHHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHE-FHAKCVDKW 165 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~-FH~~CI~~W 165 (170)
+...|+||++.+.+ ...+||||. |...|+..|
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~ 326 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL 326 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC
Confidence 35689999998854 667899999 999999887
No 70
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.56 E-value=0.001 Score=53.27 Aligned_cols=37 Identities=22% Similarity=0.490 Sum_probs=30.7
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
....|.||.+-...|..... |+|.||..|+..|++.+
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~--C~~~~H~~C~~~~~~~~ 215 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSN 215 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSS--SCCEECHHHHHHHTTTC
T ss_pred CCCcCcchhhHHhCCcccCc--cChHHHHHHHHHHHHhC
Confidence 46789999999887755433 99999999999999764
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.88 E-value=0.0067 Score=42.30 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=26.6
Q ss_pred CCccccccccCCCeeeEecCCCcchHHhHHHHHHhC
Q psy9087 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~~ 169 (170)
-|.+|--.+ ....+.+||+|+|-.+|+..|.++.
T Consensus 3 fC~~C~~Pi--~iygRmIPCkHvFCydCa~~~~~~~ 36 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIPCKHVFCYDCAILHEKKG 36 (101)
T ss_dssp BCTTTCSBC--SEEEEEETTCCEEEHHHHHHHHHTT
T ss_pred ecCccCCCe--EEEeeeccccccHHHHHHHHHHhcc
Confidence 366665554 4468899999999999999998653
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.94 E-value=0.012 Score=40.08 Aligned_cols=33 Identities=18% Similarity=0.464 Sum_probs=27.6
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
+..|.||+++|...-...-+.|+|.|-..|+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 468999999875555556699999999999998
No 73
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.50 E-value=0.074 Score=33.41 Aligned_cols=33 Identities=24% Similarity=0.500 Sum_probs=25.5
Q ss_pred CCCCCccccccccCCC-eeeEecCCCcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQ-VLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~-~v~~LPC~H~FH~~CI~ 163 (170)
+...|+||...+.++. .|.--.|...||..|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvg 38 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccC
Confidence 4668999999986544 45555699999999974
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.77 E-value=0.062 Score=34.45 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=25.6
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~~ 168 (170)
.+..|.||.+ .++.+.-=-|...||..|+++.|..
T Consensus 11 ~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~ 45 (66)
T 2lri_C 11 PGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTS 45 (66)
T ss_dssp TTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCC
T ss_pred CCCCcCCCCC---CCeEEECCCCCCceecccCCCccCc
Confidence 3567999975 3554444459999999999877653
No 75
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.97 E-value=0.21 Score=33.67 Aligned_cols=33 Identities=21% Similarity=0.613 Sum_probs=23.1
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
.++.|.||- .|..++....=-|+-+||..|+.+
T Consensus 14 ~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHH
T ss_pred CCcccCccc-cccccceeccccccccccHhhccc
Confidence 467999984 455544333333899999999986
No 76
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=88.12 E-value=0.4 Score=30.47 Aligned_cols=33 Identities=21% Similarity=0.474 Sum_probs=24.8
Q ss_pred CCCCCccccccccCCCe-eeEe-cCCCcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQV-LRGL-PCSHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~-v~~L-PC~H~FH~~CI~ 163 (170)
....|.+|...+.+++. |.-- -|.-.||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 35689999999976654 4444 699999999973
No 77
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.09 E-value=0.55 Score=30.37 Aligned_cols=31 Identities=23% Similarity=0.522 Sum_probs=23.8
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~ 163 (170)
...| ||...+..+..|..-.|...||..|+.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvg 46 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVG 46 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEc
Confidence 3456 899888755666666699999999984
No 78
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.98 E-value=0.27 Score=29.30 Aligned_cols=31 Identities=26% Similarity=0.546 Sum_probs=22.9
Q ss_pred CCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
.|.||...-+.++.+.---|...||..|+++
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCC
Confidence 5899987654444455456999999999964
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=86.35 E-value=0.41 Score=30.86 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=24.3
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
+...|.||......+..|..=-|.-.||..|+..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~ 50 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGI 50 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCC
Confidence 4567999988764333444445999999999853
No 80
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.36 E-value=0.93 Score=29.55 Aligned_cols=31 Identities=23% Similarity=0.582 Sum_probs=23.2
Q ss_pred CCCCcccccccc-CCCeeeEecCCCcchHHhHH
Q psy9087 132 QTSCVVCMCDFE-TSQVLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f~-~g~~v~~LPC~H~FH~~CI~ 163 (170)
...| ||...++ .+..|..--|...||..|+.
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvg 43 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVG 43 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHT
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecC
Confidence 4456 9999886 44455555699999999984
No 81
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=85.35 E-value=0.47 Score=32.94 Aligned_cols=32 Identities=22% Similarity=0.507 Sum_probs=24.0
Q ss_pred CCCCccccccccCCCe-eeEe-cCCCcchHHhHH
Q psy9087 132 QTSCVVCMCDFETSQV-LRGL-PCSHEFHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~-v~~L-PC~H~FH~~CI~ 163 (170)
...|.||...|.+++. +..= .|.-.||.+|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg 36 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTG 36 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCC
Confidence 4579999999966544 3333 589999999974
No 82
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=84.97 E-value=0.41 Score=30.01 Aligned_cols=34 Identities=15% Similarity=0.546 Sum_probs=24.8
Q ss_pred CCCCCccccccccC--CCeeeEecCCCcchHHhHHH
Q psy9087 131 DQTSCVVCMCDFET--SQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 131 ~~~~C~ICle~f~~--g~~v~~LPC~H~FH~~CI~~ 164 (170)
.+..|.||...... ++.+.---|.-.||..|+.+
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p 40 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTP 40 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCC
Confidence 46789999987533 33444445999999999864
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=82.51 E-value=0.89 Score=28.24 Aligned_cols=31 Identities=26% Similarity=0.655 Sum_probs=23.5
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
.+..|.||... ++.+.---|.-.||..|+.+
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p 40 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDP 40 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCT
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCC
Confidence 46789999873 45444445999999999976
No 84
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=81.62 E-value=0.77 Score=28.31 Aligned_cols=31 Identities=32% Similarity=0.669 Sum_probs=23.4
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
.+..|.||... |+.+.-=-|.-.||..|+.+
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~p 34 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDP 34 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSS
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCC
Confidence 46789999874 55454445999999999874
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.40 E-value=0.61 Score=32.27 Aligned_cols=36 Identities=19% Similarity=0.471 Sum_probs=26.6
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHHHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWL 166 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL 166 (170)
.++.|.||.+.=+.++.+.--.|...||..|+..++
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc
Confidence 467899999874433335555699999999997654
No 86
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=80.97 E-value=0.8 Score=29.21 Aligned_cols=32 Identities=22% Similarity=0.557 Sum_probs=24.2
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~ 163 (170)
+...| ||-..+..+..|.---|...||..|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvg 49 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAK 49 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccC
Confidence 45678 999887644456656699999999984
No 87
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=80.14 E-value=2 Score=27.88 Aligned_cols=31 Identities=29% Similarity=0.543 Sum_probs=24.2
Q ss_pred CCCCccccccccCCCeeeEe--cCCCcchHHhHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGL--PCSHEFHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~L--PC~H~FH~~CI~ 163 (170)
...| ||-.....|..|..= -|...||..|+.
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVg 48 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVI 48 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHS
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEc
Confidence 4567 898886667666666 699999999983
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.12 E-value=0.76 Score=27.97 Aligned_cols=32 Identities=31% Similarity=0.652 Sum_probs=23.8
Q ss_pred CCCCCCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
..+..|.||-.. ++.+.---|...||..|+.+
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~p 38 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDP 38 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSS
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCC
Confidence 346789999874 44444445999999999874
No 89
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=79.11 E-value=0.97 Score=30.82 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=24.7
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
...| ||-...+.+..|..=-|.-.||..|+..
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~ 59 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGI 59 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTC
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCC
Confidence 3457 8988877777666666999999999853
No 90
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=77.32 E-value=2.5 Score=27.14 Aligned_cols=33 Identities=21% Similarity=0.516 Sum_probs=23.3
Q ss_pred CCCCCccccccc--cCCCeeeEecCCCcchHHhHH
Q psy9087 131 DQTSCVVCMCDF--ETSQVLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f--~~g~~v~~LPC~H~FH~~CI~ 163 (170)
....|.||.+.- ..++.+.-=.|.-.||..|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~ 49 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG 49 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCC
Confidence 467899998764 233333333599999999986
No 91
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=77.14 E-value=1.1 Score=26.88 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCCccccccccCCCe-eeEe-cCCCcchHHhHH
Q psy9087 133 TSCVVCMCDFETSQV-LRGL-PCSHEFHAKCVD 163 (170)
Q Consensus 133 ~~C~ICle~f~~g~~-v~~L-PC~H~FH~~CI~ 163 (170)
-.|.||...+.+++. |.-- .|.-.||..|+.
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvg 35 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVG 35 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTT
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccC
Confidence 358899999865543 4444 599999999974
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=76.28 E-value=1.1 Score=28.11 Aligned_cols=31 Identities=23% Similarity=0.643 Sum_probs=23.0
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
.+..|.||... |+.+.-=-|.-.||..|+.+
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p 37 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSP 37 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSS
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCC
Confidence 46789999863 45444445999999999874
No 93
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.06 E-value=1.1 Score=28.70 Aligned_cols=31 Identities=19% Similarity=0.506 Sum_probs=23.3
Q ss_pred CCCCccccccccCCC-eeeEecCCCcchHHhHH
Q psy9087 132 QTSCVVCMCDFETSQ-VLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f~~g~-~v~~LPC~H~FH~~CI~ 163 (170)
...| ||-..+.+|+ .|..=.|...||..|+.
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg 47 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIG 47 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTT
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeec
Confidence 4568 7998877765 55555699999999974
No 94
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=75.15 E-value=2.1 Score=28.61 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=22.9
Q ss_pred CCCCCccccccc-cCCCe-eeEecCCCcchHHhHHH
Q psy9087 131 DQTSCVVCMCDF-ETSQV-LRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 131 ~~~~C~ICle~f-~~g~~-v~~LPC~H~FH~~CI~~ 164 (170)
++..|.||...- .+++. +..=-|.-.||..|+.+
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p 59 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV 59 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTC
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCC
Confidence 457899999764 22223 33334889999999863
No 95
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=74.88 E-value=1.1 Score=27.81 Aligned_cols=31 Identities=23% Similarity=0.567 Sum_probs=22.5
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
.+..|.||.+ .|+.+.---|...||..|+.+
T Consensus 8 ~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~p 38 (61)
T 1mm2_A 8 HMEFCRVCKD---GGELLCCDTCPSSYHIHCLNP 38 (61)
T ss_dssp SCSSCTTTCC---CSSCBCCSSSCCCBCSSSSSS
T ss_pred CCCcCCCCCC---CCCEEEcCCCCHHHcccccCC
Confidence 4678999985 344444445899999999874
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=73.79 E-value=2.1 Score=29.64 Aligned_cols=32 Identities=16% Similarity=0.501 Sum_probs=23.2
Q ss_pred CCCCccccccc------cCCCeeeEecCCCcchHHhHH
Q psy9087 132 QTSCVVCMCDF------ETSQVLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f------~~g~~v~~LPC~H~FH~~CI~ 163 (170)
...|.+|+..= ..++-+.---|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 46899999763 223345555699999999995
No 97
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.61 E-value=1.3 Score=29.85 Aligned_cols=33 Identities=27% Similarity=0.489 Sum_probs=23.8
Q ss_pred CCCCCccccccccCCCeeeEecCCCcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~ 163 (170)
+...|.||...-..++.+..=-|...||..|+.
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~ 47 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLL 47 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSS
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCC
Confidence 356899999875443444444599999999986
No 98
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=70.90 E-value=1.5 Score=23.47 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=21.6
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhH
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCV 162 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI 162 (170)
+.|+.|-...-..+.+.. =|..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~--~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC--LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS--SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE--CCeEecccCC
Confidence 479999998877666654 4789999983
No 99
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=70.43 E-value=1 Score=31.48 Aligned_cols=34 Identities=18% Similarity=0.462 Sum_probs=23.6
Q ss_pred CCCcccccccc----C---CCeeeEecCCCcchHHhHHHHH
Q psy9087 133 TSCVVCMCDFE----T---SQVLRGLPCSHEFHAKCVDKWL 166 (170)
Q Consensus 133 ~~C~ICle~f~----~---g~~v~~LPC~H~FH~~CI~~WL 166 (170)
..|.||+..-. . ++-+.--.|+..||..|+..++
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTL 42 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCH
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChh
Confidence 47999997642 1 2334445699999999997653
No 100
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=69.86 E-value=1.2 Score=29.68 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=23.1
Q ss_pred CCCCccccccccC--CCeeeEecCCCcchHHhHHH
Q psy9087 132 QTSCVVCMCDFET--SQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 132 ~~~C~ICle~f~~--g~~v~~LPC~H~FH~~CI~~ 164 (170)
...|.||...-.. ++.+..=-|...||..|+.+
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~P 50 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKP 50 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSS
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCC
Confidence 4689999986432 23333334999999999875
No 101
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=69.21 E-value=4.5 Score=29.58 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=25.0
Q ss_pred CCCCCCccccccccCCCeeeEecCCCcchHHhHHHHH
Q psy9087 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWL 166 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL 166 (170)
+.++.|.||-+ .|+-+--=.|--.||..||.+=|
T Consensus 61 g~~d~C~vC~~---GG~LlcCD~Cpr~Fh~~Cl~p~l 94 (142)
T 2lbm_A 61 GMDEQCRWCAE---GGNLICCDFCHNAFCKKCILRNL 94 (142)
T ss_dssp SCBCSCSSSCC---CSSEEECSSSCCEEEHHHHHHHT
T ss_pred CCCCeecccCC---CCcEEeCCCCCCeeeHhhcCCCC
Confidence 34678999997 35544444599999999999644
No 102
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.98 E-value=1.4 Score=29.72 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=23.2
Q ss_pred CCCCCCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
..++.|.||... |+.+..--|.-.||..|+.+
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~P 54 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLP 54 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSST
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCC
Confidence 346789999964 44444445889999999865
No 103
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=68.03 E-value=4.2 Score=29.26 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=23.3
Q ss_pred CCCCCCccccccccCCCeeeEecCCCcchHHhHHHH
Q psy9087 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKW 165 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~W 165 (170)
+.++.|.||-+. |+-+--=.|-..||..||.+=
T Consensus 55 g~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~ 87 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRN 87 (129)
T ss_dssp SCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHH
T ss_pred CCCCcCeecCCC---CeeEecCCCchhhhHHHhCCC
Confidence 345689999964 443322348899999999863
No 104
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.46 E-value=2.8 Score=28.29 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=20.8
Q ss_pred CCCCCccccccccCCCeeeEec--CC-CcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLP--CS-HEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LP--C~-H~FH~~CI~ 163 (170)
+...| ||-.... |+.|..=. |. ..||..|+.
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg 68 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG 68 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC
Confidence 34567 9988653 55444444 66 689999985
No 105
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.17 E-value=1.5 Score=28.69 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=22.4
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
..|.||...=..++.+.-=-|...||..|+.+
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~P 58 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNP 58 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSS
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCC
Confidence 37888887544444444445999999999873
No 106
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=61.40 E-value=1.6 Score=27.90 Aligned_cols=31 Identities=26% Similarity=0.568 Sum_probs=19.6
Q ss_pred CCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
.|.||...-..++.+.-=-|...||..|+.+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~P 50 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDP 50 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSS
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCC
Confidence 5667775433333333334899999999873
No 107
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=59.25 E-value=2.1 Score=29.76 Aligned_cols=32 Identities=25% Similarity=0.602 Sum_probs=23.6
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
..|.||...-..++.+.---|...||..|+.+
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p 90 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNP 90 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSS
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCC
Confidence 36889987655555555556999999999873
No 108
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=59.13 E-value=5 Score=25.60 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=20.2
Q ss_pred CCCCccccccccCCCeeeEec--CC-CcchHHhHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLP--CS-HEFHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LP--C~-H~FH~~CI~ 163 (170)
...| ||-.... |+.|.-=. |. ..||..|+.
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg 48 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG 48 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC
Confidence 4567 8987643 55444334 66 699999985
No 109
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=58.14 E-value=3.2 Score=24.64 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=20.0
Q ss_pred cccccccCCCeeeEecCCCcchHHhHH
Q psy9087 137 VCMCDFETSQVLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 137 ICle~f~~g~~v~~LPC~H~FH~~CI~ 163 (170)
||-..+..+..|.--.|.-.||..|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvg 34 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAK 34 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccC
Confidence 787776644556555699999999974
No 110
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=55.88 E-value=3.1 Score=28.54 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=20.7
Q ss_pred CCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
.|.||-..-+....+.---|...||..|+.+
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p 86 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQP 86 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSS
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCC
Confidence 5777776543333344445999999999864
No 111
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=54.26 E-value=6.3 Score=34.38 Aligned_cols=30 Identities=27% Similarity=0.642 Sum_probs=22.6
Q ss_pred CCCcccccccc-CCCeeeEecCCCcchHHhHH
Q psy9087 133 TSCVVCMCDFE-TSQVLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 133 ~~C~ICle~f~-~g~~v~~LPC~H~FH~~CI~ 163 (170)
..| ||-..+. .+..|..--|.-.||..|+.
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvg 68 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVG 68 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHT
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecC
Confidence 345 9998886 45556666699999999983
No 112
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=53.98 E-value=2.5 Score=23.40 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=12.8
Q ss_pred CCCCCccccccccCCCe
Q psy9087 131 DQTSCVVCMCDFETSQV 147 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~ 147 (170)
++-.|+||+.++..-+.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 35689999999876443
No 113
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=53.01 E-value=3.7 Score=28.38 Aligned_cols=32 Identities=25% Similarity=0.561 Sum_probs=21.5
Q ss_pred CCCccccccc-cCCCeeeEecCCCcchHHhHHH
Q psy9087 133 TSCVVCMCDF-ETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 133 ~~C~ICle~f-~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
..|.||...- ..++.+.---|...||..|+++
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p 94 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDP 94 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSS
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCC
Confidence 3688888752 3333333334999999999865
No 114
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=51.80 E-value=7.7 Score=26.85 Aligned_cols=31 Identities=16% Similarity=0.492 Sum_probs=21.5
Q ss_pred CCCCCCccccccccCCCeeeEe--cCCCcchHHhHH
Q psy9087 130 SDQTSCVVCMCDFETSQVLRGL--PCSHEFHAKCVD 163 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~v~~L--PC~H~FH~~CI~ 163 (170)
..++.|.||.+ .|+.+.-= .|-..||..|+.
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCc
Confidence 34678999983 34433333 488999999986
No 115
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=50.92 E-value=9 Score=24.42 Aligned_cols=30 Identities=23% Similarity=0.555 Sum_probs=21.6
Q ss_pred CCccccccccC-CCeeeEecCCCcchHHhHH
Q psy9087 134 SCVVCMCDFET-SQVLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 134 ~C~ICle~f~~-g~~v~~LPC~H~FH~~CI~ 163 (170)
.-.||-..+.. +..|.--.|.-.||..|+.
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg 41 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVG 41 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHT
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEeccccc
Confidence 44489887753 4455555699999999984
No 116
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=50.35 E-value=4.4 Score=25.40 Aligned_cols=26 Identities=19% Similarity=0.540 Sum_probs=13.7
Q ss_pred CCccccccccCCCeeeEecCCCcchHHh
Q psy9087 134 SCVVCMCDFETSQVLRGLPCSHEFHAKC 161 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LPC~H~FH~~C 161 (170)
.|+.|-+.+..++.+..+ +..||.+|
T Consensus 2 ~C~~C~~~I~~~~~v~a~--~~~~H~~C 27 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSL--GKDWHRPC 27 (76)
T ss_dssp BCTTTSSBCCGGGEEEET--TEEEETTT
T ss_pred cCCCCCCEEECceEEEEC--CccccCCC
Confidence 355566655555544333 55555555
No 117
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.16 E-value=8.3 Score=24.65 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=16.8
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCV 162 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI 162 (170)
...|+.|-+.+..++.+.. -+..||.+|.
T Consensus 15 ~~~C~~C~~~I~~~e~v~a--~~~~wH~~CF 43 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCV--NGHFFHRSCF 43 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCB--TTBCCBTTTC
T ss_pred CCCCcccCCCcccceEEEE--CCCeeCCCcC
Confidence 3467777776655555442 3556666663
No 118
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.04 E-value=10 Score=23.55 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=12.9
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHh
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKC 161 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~C 161 (170)
..|+.|-+.+..++.+.. -+..||.+|
T Consensus 10 ~~C~~C~~~I~~~~~v~a--~~~~~H~~C 36 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSS--LGKDWHKFC 36 (76)
T ss_dssp CBCTTTCCBCCTTTEEEE--TTEEEETTT
T ss_pred CCCcCCCCEeECCeEEEE--CCeEeeCCC
Confidence 345555555554444332 244555544
No 119
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=47.30 E-value=3 Score=27.19 Aligned_cols=31 Identities=26% Similarity=0.568 Sum_probs=19.1
Q ss_pred CCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
.|.||-..-..++.+.-=-|...||..|+.+
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~P 58 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDP 58 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSS
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCC
Confidence 4666655433333333334889999999975
No 120
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.28 E-value=8.7 Score=24.51 Aligned_cols=29 Identities=24% Similarity=0.618 Sum_probs=18.6
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCV 162 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI 162 (170)
...|+-|-+.+..++.+..+ +..||.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~--~~~wH~~CF 43 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLAL--DKQWHVSCF 43 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEET--TEEECTTTC
T ss_pred CCCCcCcCCeeCCCeEEEEC--CcccccccC
Confidence 34678887777666655443 566776664
No 121
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=47.01 E-value=7.4 Score=26.15 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=19.5
Q ss_pred CCCCCccccccccCCCeeeEecCC---CcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPCS---HEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC~---H~FH~~CI~ 163 (170)
+...| ||-... .|+.|..=.|. -.||..||.
T Consensus 25 ~~~yC-iC~~~~-~g~MI~CD~c~C~~eWfH~~CVg 58 (90)
T 2jmi_A 25 EEVYC-FCRNVS-YGPMVACDNPACPFEWFHYGCVG 58 (90)
T ss_dssp CSCCS-TTTCCC-SSSEECCCSSSCSCSCEETTTSS
T ss_pred CCcEE-EeCCCC-CCCEEEecCCCCccccCcCccCC
Confidence 34567 998743 25544433454 789999984
No 122
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=44.89 E-value=5.8 Score=31.23 Aligned_cols=32 Identities=25% Similarity=0.545 Sum_probs=19.2
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhHHH
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~ 164 (170)
..|.||...=..++.+..=-|...||..|+.+
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~P 206 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDP 206 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--C
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCC
Confidence 36888876533344444445999999999974
No 123
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=43.75 E-value=6.3 Score=24.14 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=20.0
Q ss_pred CCCCccccccccCCCeeeEec--CC-CcchHHhHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLP--CS-HEFHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LP--C~-H~FH~~CI~ 163 (170)
...| ||-... .|+.+.-=. |. ..||..|+.
T Consensus 9 ~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg 41 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD 41 (59)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT
T ss_pred CcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC
Confidence 4456 898864 354444334 66 699999985
No 124
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=42.17 E-value=6.9 Score=23.98 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=19.1
Q ss_pred CCCCccccccccCCCeeeEec--CC-CcchHHhHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLP--CS-HEFHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LP--C~-H~FH~~CI~ 163 (170)
...| ||..... |+.+.-=. |. ..||..|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg 42 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG 42 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC
Confidence 4456 8987642 44333334 55 689999985
No 125
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=41.02 E-value=15 Score=24.22 Aligned_cols=33 Identities=18% Similarity=0.553 Sum_probs=23.8
Q ss_pred CCCCCccccccccCCCe-eeEecCCCcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQV-LRGLPCSHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~-v~~LPC~H~FH~~CI~ 163 (170)
+...|.+|...|..-.. .-.-.||++|-..|..
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~ 52 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCN 52 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccC
Confidence 35689999999976442 2234599999988854
No 126
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=39.96 E-value=20 Score=23.17 Aligned_cols=33 Identities=27% Similarity=0.564 Sum_probs=23.5
Q ss_pred CCCCCccccccccCCCe-eeEecCCCcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQV-LRGLPCSHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~-v~~LPC~H~FH~~CI~ 163 (170)
+...|.+|...|..-.. .---.||.+|-..|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 45689999999976432 2223499999888854
No 127
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=39.84 E-value=22 Score=23.06 Aligned_cols=34 Identities=24% Similarity=0.483 Sum_probs=24.2
Q ss_pred CCCCCCccccccccCCCe-eeEecCCCcchHHhHH
Q psy9087 130 SDQTSCVVCMCDFETSQV-LRGLPCSHEFHAKCVD 163 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~-v~~LPC~H~FH~~CI~ 163 (170)
.+...|.+|...|..-.. .---.||++|-..|..
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 346689999999976442 2223499999888854
No 128
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=38.36 E-value=15 Score=26.34 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=23.2
Q ss_pred CCCCCcccccccc-C-CCeeeEecCCCcchHHhH
Q psy9087 131 DQTSCVVCMCDFE-T-SQVLRGLPCSHEFHAKCV 162 (170)
Q Consensus 131 ~~~~C~ICle~f~-~-g~~v~~LPC~H~FH~~CI 162 (170)
....|.+|...|. . +-......|.|.+-..|-
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 4678999999993 3 334555669998887773
No 129
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=36.88 E-value=12 Score=23.30 Aligned_cols=29 Identities=21% Similarity=0.564 Sum_probs=21.1
Q ss_pred CCCccccccccCCCeeeEe--cCCCcchHHhH
Q psy9087 133 TSCVVCMCDFETSQVLRGL--PCSHEFHAKCV 162 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~L--PC~H~FH~~CI 162 (170)
..| ||-.....|..|.-= -|...||..|+
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cv 41 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCV 41 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTS
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhC
Confidence 346 897776667655543 39999999997
No 130
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.20 E-value=17 Score=22.12 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=4.9
Q ss_pred CCccccccccC
Q psy9087 134 SCVVCMCDFET 144 (170)
Q Consensus 134 ~C~ICle~f~~ 144 (170)
.|+.|-+.+..
T Consensus 7 ~C~~C~~~I~~ 17 (72)
T 1wyh_A 7 GCSACGETVMP 17 (72)
T ss_dssp BCSSSCCBCCS
T ss_pred CCccCCCcccc
Confidence 34444444443
No 131
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=36.03 E-value=31 Score=22.66 Aligned_cols=33 Identities=18% Similarity=0.462 Sum_probs=23.4
Q ss_pred CCCCCccccccccCCCe-eeEecCCCcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQV-LRGLPCSHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~-v~~LPC~H~FH~~CI~ 163 (170)
+...|.+|...|..-.. .-.-.||++|-..|..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 45689999999976432 2233499999888853
No 132
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=36.02 E-value=20 Score=25.25 Aligned_cols=33 Identities=21% Similarity=0.506 Sum_probs=23.7
Q ss_pred CCCCCccccccccCCCe-eeEecCCCcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQV-LRGLPCSHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~-v~~LPC~H~FH~~CI~ 163 (170)
+...|.+|...|..-.. .-.=.||++|-..|..
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 35689999999976432 2223499999999853
No 133
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.15 E-value=23 Score=22.14 Aligned_cols=29 Identities=14% Similarity=0.277 Sum_probs=15.9
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhH
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCV 162 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI 162 (170)
..|+.|-+.+..++.+.. .=+..||.+|.
T Consensus 16 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF 44 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE-YKGTVWHKDCF 44 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE-CSSCEEETTTC
T ss_pred CcCccCCcccccCceEEE-ECccccccccC
Confidence 467777776665554321 13556666653
No 134
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.13 E-value=31 Score=22.28 Aligned_cols=34 Identities=18% Similarity=0.505 Sum_probs=23.2
Q ss_pred CCCCCCccccccccCCCe-eeEecCCCcchHHhHH
Q psy9087 130 SDQTSCVVCMCDFETSQV-LRGLPCSHEFHAKCVD 163 (170)
Q Consensus 130 ~~~~~C~ICle~f~~g~~-v~~LPC~H~FH~~CI~ 163 (170)
.+...|.+|...|..-.. .---.||.+|-..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 345689999999965432 2223499999888853
No 135
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=33.19 E-value=19 Score=21.72 Aligned_cols=30 Identities=17% Similarity=0.537 Sum_probs=17.1
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCV 162 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI 162 (170)
...|+-|-+.+..++.+.. .=+..||.+|.
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF 40 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF 40 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC
Confidence 3467777777766554432 23455666663
No 136
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.18 E-value=22 Score=22.88 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=17.2
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCV 162 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI 162 (170)
...|+-|-+.+..++.+ ..-+..||.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF 43 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISCF 43 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTTC
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCCC
Confidence 34677777776655544 234566666663
No 137
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=32.53 E-value=16 Score=22.95 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=14.1
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHh
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKC 161 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~C 161 (170)
..|+.|-+.+..++.+.. -+..||.+|
T Consensus 8 ~~C~~C~~~I~~~~~~~a--~~~~~H~~C 34 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC--DGRSFHRCC 34 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE--TTEEEESSS
T ss_pred CcCcCcCccccCceeEEe--CCccccccc
Confidence 356666666655554322 345555555
No 138
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=32.26 E-value=12 Score=23.04 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=19.4
Q ss_pred CCCCccccccccCCCeeeEec--CC-CcchHHhHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLP--CS-HEFHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LP--C~-H~FH~~CI~ 163 (170)
...| ||-... .|+.+.-=. |. ..||..|+.
T Consensus 11 ~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg 43 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS 43 (62)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT
T ss_pred CcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC
Confidence 4456 898863 354443334 55 899999985
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.95 E-value=22 Score=27.12 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=23.6
Q ss_pred CCCCCccccccccCCCe-eeEecCCCcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQV-LRGLPCSHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~-v~~LPC~H~FH~~CI~ 163 (170)
++..|.+|...|..-.. .-.=.||++|...|..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 35799999999975432 2223499999988853
No 140
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=31.75 E-value=32 Score=21.58 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=22.3
Q ss_pred CCCCccccccccCCCe-eeEecCCCcchHHhHH
Q psy9087 132 QTSCVVCMCDFETSQV-LRGLPCSHEFHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~-v~~LPC~H~FH~~CI~ 163 (170)
+..|.+|...|..-.. .---.||++|-..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 3589999999976432 2223499999888853
No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.28 E-value=23 Score=27.33 Aligned_cols=33 Identities=24% Similarity=0.518 Sum_probs=23.9
Q ss_pred CCCCCccccccccCCCe-eeEecCCCcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQV-LRGLPCSHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~-v~~LPC~H~FH~~CI~ 163 (170)
+...|.+|...|..-.. .-.-.||++|-..|-.
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 35689999999976442 2233599999988853
No 142
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.06 E-value=24 Score=21.42 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=5.1
Q ss_pred CCccccccccC
Q psy9087 134 SCVVCMCDFET 144 (170)
Q Consensus 134 ~C~ICle~f~~ 144 (170)
.|+.|-+.+..
T Consensus 7 ~C~~C~~~I~~ 17 (72)
T 1x4k_A 7 GCQECKKTIMP 17 (72)
T ss_dssp CBSSSCCCCCS
T ss_pred CCccCCCcccC
Confidence 34444444443
No 143
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=30.96 E-value=93 Score=20.56 Aligned_cols=37 Identities=24% Similarity=0.522 Sum_probs=28.8
Q ss_pred CCCCCccccccccCCCeeeEec--CCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLP--CSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LP--C~H~FH~~CI~~WL~~ 168 (170)
....|.+|.|.+++.--| +-| =+|.|...|-...+++
T Consensus 14 a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 456899999999886555 334 5799999998887764
No 144
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=30.58 E-value=19 Score=24.76 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=16.3
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKW 165 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~W 165 (170)
-..|..|-..+..|+..... =+..|...|....
T Consensus 36 CF~C~~C~~~L~~g~~f~~~-~g~~yC~~cy~~~ 68 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLLI-NSDIVCEQDIYEW 68 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEEC-SSSEEEGGGHHHH
T ss_pred cCccccCCCCCCCCCcEEee-CCEEEcHHHhHHH
Confidence 45677777777555533221 2334444444443
No 145
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=30.46 E-value=20 Score=24.57 Aligned_cols=12 Identities=42% Similarity=1.005 Sum_probs=9.5
Q ss_pred chHHhHHHHHHh
Q psy9087 157 FHAKCVDKWLKI 168 (170)
Q Consensus 157 FH~~CI~~WL~~ 168 (170)
|...|+.+|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 668899999863
No 146
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.29 E-value=28 Score=21.07 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=17.2
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL~ 167 (170)
-..|..|-..+.. +.. ...=+..|...|-.+-+.
T Consensus 33 CF~C~~C~~~L~~-~~~-~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRG-QHF-YAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTT-SCE-EESSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCc-CcC-EeeCCeEECHHHHHHHHc
Confidence 4567777766632 221 122345565666555444
No 147
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.28 E-value=21 Score=24.59 Aligned_cols=12 Identities=25% Similarity=0.963 Sum_probs=9.4
Q ss_pred chHHhHHHHHHh
Q psy9087 157 FHAKCVDKWLKI 168 (170)
Q Consensus 157 FH~~CI~~WL~~ 168 (170)
|...|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 668899999863
No 148
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.73 E-value=25 Score=21.23 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=7.7
Q ss_pred CCCCccccccccCC
Q psy9087 132 QTSCVVCMCDFETS 145 (170)
Q Consensus 132 ~~~C~ICle~f~~g 145 (170)
--.|..|-..+..+
T Consensus 31 CF~C~~C~~~L~~~ 44 (70)
T 2d8x_A 31 CFRCDLCQEVLADI 44 (70)
T ss_dssp TSBCSSSCCBCSSS
T ss_pred CCEeCCCCCcCCCC
Confidence 34566666555544
No 149
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.12 E-value=29 Score=22.52 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=21.8
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCV 162 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI 162 (170)
...|..|-+.+..++.+... =+..||.+|.
T Consensus 66 ~~~C~~C~~~I~~~~~~~~a-~~~~~H~~CF 95 (101)
T 2cup_A 66 SPKCKGCFKAIVAGDQNVEY-KGTVWHKDCF 95 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEES-SSCEEETTTC
T ss_pred CCccccCCCccccCCeEEEe-CCcchHHhCC
Confidence 45799999998877654332 4788998884
No 150
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.10 E-value=45 Score=20.88 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=19.4
Q ss_pred CCCCccccccccCCCeeeEecC---CCcchHHhHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPC---SHEFHAKCVD 163 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC---~H~FH~~CI~ 163 (170)
...| ||-.. ..|+.|.--.| ...||..|+.
T Consensus 6 ~~yC-~C~~~-~~g~MI~CD~cdC~~~WfH~~Cvg 38 (70)
T 1x4i_A 6 SGYC-ICNQV-SYGEMVGCDNQDCPIEWFHYGCVG 38 (70)
T ss_dssp CCCS-TTSCC-CCSSEECCSCTTCSCCCEEHHHHT
T ss_pred CeEE-EcCCC-CCCCEeEeCCCCCCccCCcccccc
Confidence 3455 58775 34555554455 3799999985
No 151
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.96 E-value=19 Score=22.56 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=18.3
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHhHHHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWL 166 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~CI~~WL 166 (170)
--.|..|-..+..|+......=+..|...|-.+-+
T Consensus 41 CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 41 CFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp SCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred cCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 45677777776655543211234455555555443
No 152
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=27.36 E-value=58 Score=24.08 Aligned_cols=35 Identities=29% Similarity=0.513 Sum_probs=25.0
Q ss_pred CCCCCccccccccCCCeeeEe--cCCCcchHHhHHHHHHh
Q psy9087 131 DQTSCVVCMCDFETSQVLRGL--PCSHEFHAKCVDKWLKI 168 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~L--PC~H~FH~~CI~~WL~~ 168 (170)
-+..|.||-+. |+.+..= .|...|-.+||+.++..
T Consensus 78 ~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 36789999863 3333333 48899999999988754
No 153
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.31 E-value=15 Score=21.99 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=6.2
Q ss_pred CCCccccccccC
Q psy9087 133 TSCVVCMCDFET 144 (170)
Q Consensus 133 ~~C~ICle~f~~ 144 (170)
-.|..|-..+..
T Consensus 32 F~C~~C~~~L~~ 43 (66)
T 1nyp_A 32 FVCAKCEKPFLG 43 (66)
T ss_dssp CBCTTTCCBCSS
T ss_pred CEECCCCCCCCC
Confidence 455556555543
No 154
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.44 E-value=35 Score=20.86 Aligned_cols=29 Identities=17% Similarity=0.526 Sum_probs=14.1
Q ss_pred CCCCccccccccCCCeeeEecCCCcchHHh
Q psy9087 132 QTSCVVCMCDFETSQVLRGLPCSHEFHAKC 161 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~LPC~H~FH~~C 161 (170)
...|+-|-+.+..++.+... -+..||.+|
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a-~~~~~H~~C 39 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS-NGELYHEQC 39 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE-TTEEECTTT
T ss_pred CCCchhcCCccCCCceEEEe-CccEecccc
Confidence 34566666666543333211 244555555
No 155
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.58 E-value=26 Score=21.92 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=4.7
Q ss_pred CCcccccccc
Q psy9087 134 SCVVCMCDFE 143 (170)
Q Consensus 134 ~C~ICle~f~ 143 (170)
.|+.|-+.+.
T Consensus 17 ~C~~C~~~I~ 26 (81)
T 1v6g_A 17 RCFSCDQFIE 26 (81)
T ss_dssp BCTTTCCBCC
T ss_pred cCccccCEec
Confidence 4455544444
No 156
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.42 E-value=36 Score=20.94 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=5.3
Q ss_pred CCcccccccc
Q psy9087 134 SCVVCMCDFE 143 (170)
Q Consensus 134 ~C~ICle~f~ 143 (170)
.|+.|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (76)
T 1x68_A 7 GCVACSKPIS 16 (76)
T ss_dssp CCTTTCCCCC
T ss_pred CCccCCCccc
Confidence 4555555554
No 157
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.31 E-value=38 Score=20.50 Aligned_cols=10 Identities=20% Similarity=0.611 Sum_probs=4.5
Q ss_pred CCcccccccc
Q psy9087 134 SCVVCMCDFE 143 (170)
Q Consensus 134 ~C~ICle~f~ 143 (170)
.|+-|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x4l_A 7 GCAGCTNPIS 16 (72)
T ss_dssp SBTTTTBCCC
T ss_pred CCcCCCcccc
Confidence 3444444443
No 158
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.23 E-value=33 Score=21.93 Aligned_cols=26 Identities=15% Similarity=0.311 Sum_probs=11.8
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHh
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKC 161 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~C 161 (170)
..|+.|-+.+. ++.+. .-+..||.+|
T Consensus 26 ~~C~~C~~~I~-~~~v~--a~~~~~H~~C 51 (90)
T 2dar_A 26 PMCAHCNQVIR-GPFLV--ALGKSWHPEE 51 (90)
T ss_dssp CBBSSSCCBCC-SCEEE--ETTEEECTTT
T ss_pred CCCccCCCEec-ceEEE--ECCccccccC
Confidence 35555555552 23222 2345555554
No 159
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.87 E-value=38 Score=21.16 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=11.8
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHh
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKC 161 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~C 161 (170)
..|+-|-+.+. ++.+.. -+..||.+|
T Consensus 16 ~~C~~C~~~I~-~~~v~a--~~~~~H~~C 41 (79)
T 2cor_A 16 YICQKCHAIID-EQPLIF--KNDPYHPDH 41 (79)
T ss_dssp CBCTTTCCBCC-SCCCCC--SSSCCCTTT
T ss_pred CCCccCCCEec-ceEEEE--CcceeCCCC
Confidence 35666655555 222221 344555544
No 160
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=24.42 E-value=53 Score=20.78 Aligned_cols=29 Identities=28% Similarity=0.625 Sum_probs=21.4
Q ss_pred CCCCCccccccccCCCeeeEecC-CCcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQVLRGLPC-SHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~v~~LPC-~H~FH~~CI~ 163 (170)
+..-|.||.++ -.++.+.| +-+|-..|..
T Consensus 7 e~pWC~ICneD----AtlrC~gCdgDLYC~rC~r 36 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAGCDGDLYCARCFR 36 (67)
T ss_dssp CCSSCTTTCSC----CCEEETTTTSEEECSSHHH
T ss_pred CCCeeEEeCCC----CeEEecCCCCceehHHHHH
Confidence 35679999997 44777888 6777777754
No 161
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.77 E-value=33 Score=20.61 Aligned_cols=11 Identities=18% Similarity=0.561 Sum_probs=6.0
Q ss_pred CCCcccccccc
Q psy9087 133 TSCVVCMCDFE 143 (170)
Q Consensus 133 ~~C~ICle~f~ 143 (170)
-.|..|...+.
T Consensus 32 F~C~~C~~~L~ 42 (70)
T 2d8z_A 32 FVCTACRKQLS 42 (70)
T ss_dssp SBCSSSCCBCT
T ss_pred CccCCCCCcCC
Confidence 45556655553
No 162
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.55 E-value=56 Score=22.18 Aligned_cols=28 Identities=18% Similarity=0.487 Sum_probs=16.4
Q ss_pred CCCccccccccCCCeeeEecCCCcchHHhH
Q psy9087 133 TSCVVCMCDFETSQVLRGLPCSHEFHAKCV 162 (170)
Q Consensus 133 ~~C~ICle~f~~g~~v~~LPC~H~FH~~CI 162 (170)
..|+-|-+.+..+..+.. -+..||.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~a--~~~~wH~~CF 33 (122)
T 1m3v_A 6 KRCAGCGGKIADRFLLYA--MDSYWHSRCL 33 (122)
T ss_dssp CCBSSSSSCCCSSCCEEE--TTEEECHHHH
T ss_pred CCCcccCCEeCCcEEEEE--CCceeHhhCC
Confidence 467777776665543333 3566676664
No 163
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=23.09 E-value=24 Score=23.97 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=18.6
Q ss_pred CCccccccccCCCeeeEec-CCCcchHHhHH
Q psy9087 134 SCVVCMCDFETSQVLRGLP-CSHEFHAKCVD 163 (170)
Q Consensus 134 ~C~ICle~f~~g~~v~~LP-C~H~FH~~CI~ 163 (170)
.|..|..+.+.++.+..-. |...||..|+.
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~ 91 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQ 91 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCC
T ss_pred cccccccccccCcceEEeeecCCeEECCCCC
Confidence 3444544544444444434 99999999964
No 164
>2q23_A Protein alpha; virus like particle, T363N mutant, icosahedral virus, hydrolase/RNA complex; 3.20A {Flock house virus} PDB: 2q25_A
Probab=22.71 E-value=25 Score=29.20 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=5.0
Q ss_pred cCCCCCCcccccccCCCC--CCCCCCCcchH
Q psy9087 32 HHPVPNRSRNSLRRWRGQ--TLAPSNTYPGL 60 (170)
Q Consensus 32 ~~~~~~r~r~~~rR~r~~--~~~p~~~~~~~ 60 (170)
.+++++|+||.|||-|+. -.++..+.+++
T Consensus 34 ~r~~~~R~Rr~Rrr~ra~~~~~l~rls~pGL 64 (407)
T 2q23_A 34 GRRRRNRTRRNRRRVRGMNMAALTRLSQPGL 64 (407)
T ss_dssp --------------------CCSCCCCHHHH
T ss_pred ccccccccccchHhhhhhhhhhhhhccccch
Confidence 344555666666665552 33344455554
No 165
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=22.42 E-value=40 Score=22.10 Aligned_cols=32 Identities=22% Similarity=0.607 Sum_probs=21.0
Q ss_pred CCCCccccccccCCCeeeEe--cCCCcchHHhHHH
Q psy9087 132 QTSCVVCMCDFETSQVLRGL--PCSHEFHAKCVDK 164 (170)
Q Consensus 132 ~~~C~ICle~f~~g~~v~~L--PC~H~FH~~CI~~ 164 (170)
...|.||-+. ..|-.+..- .|.-.||..|...
T Consensus 17 ~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHH
Confidence 3579999643 124444433 3889999999753
No 166
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.98 E-value=41 Score=24.54 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=24.5
Q ss_pred CCCCCccccccc--cCCCeeeEecCCCcchHHhH
Q psy9087 131 DQTSCVVCMCDF--ETSQVLRGLPCSHEFHAKCV 162 (170)
Q Consensus 131 ~~~~C~ICle~f--~~g~~v~~LPC~H~FH~~CI 162 (170)
.+..|++|...| -.+-......|+|.+-..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 467999999987 44455666679999988885
No 167
>4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A
Probab=21.54 E-value=51 Score=24.94 Aligned_cols=23 Identities=13% Similarity=-0.050 Sum_probs=16.3
Q ss_pred eeeEec-CCCcchHH--------hHHHHHHhC
Q psy9087 147 VLRGLP-CSHEFHAK--------CVDKWLKIG 169 (170)
Q Consensus 147 ~v~~LP-C~H~FH~~--------CI~~WL~~~ 169 (170)
++..+| |+|..+.+ -|..||++|
T Consensus 250 ~l~~~~~~gH~~~~e~~~e~v~~~i~~FL~~H 281 (281)
T 4fbl_A 250 ELLWLENSYHVATLDNDKELILERSLAFIRKH 281 (281)
T ss_dssp EEEEESSCCSCGGGSTTHHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCcCccccCHHHHHHHHHHHHHhC
Confidence 466677 99976532 467899876
No 168
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=21.53 E-value=47 Score=23.29 Aligned_cols=33 Identities=24% Similarity=0.541 Sum_probs=22.9
Q ss_pred CCCCCccccccccCCC-eeeEecCCCcchHHhHH
Q psy9087 131 DQTSCVVCMCDFETSQ-VLRGLPCSHEFHAKCVD 163 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~-~v~~LPC~H~FH~~CI~ 163 (170)
+...|..|-..|..-. ..-.-.||.+|-..|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~ 51 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSS 51 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEE
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhC
Confidence 3468999999997533 23334599999999854
No 169
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.38 E-value=37 Score=20.37 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=7.3
Q ss_pred CCCCcccccccc
Q psy9087 132 QTSCVVCMCDFE 143 (170)
Q Consensus 132 ~~~C~ICle~f~ 143 (170)
--.|..|-..+.
T Consensus 31 CF~C~~C~~~L~ 42 (69)
T 2cur_A 31 CFVCVTCSKKLA 42 (69)
T ss_dssp TTBCTTTCCBCT
T ss_pred cCEECCCCCCCC
Confidence 456666666654
No 170
>4ftb_A Capsid protein beta; nodavirus, beta-barrel, jelly aspartyl protease, capsid protein, hydrolase, autoproteoLys virion; HET: EPE; 2.70A {Flock house virus} PDB: 4fsj_A* 2q26_A* 2z2q_A 3lob_A 2bbv_A
Probab=20.64 E-value=22 Score=29.16 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=4.0
Q ss_pred cCCCCCCcccccccCCCC--CCCCCCCcchH
Q psy9087 32 HHPVPNRSRNSLRRWRGQ--TLAPSNTYPGL 60 (170)
Q Consensus 32 ~~~~~~r~r~~~rR~r~~--~~~p~~~~~~~ 60 (170)
.+++++|+||.|||.|.. -.++..+.+|+
T Consensus 34 ~r~~~~R~RR~RR~~R~~~~~~l~rls~pGL 64 (363)
T 4ftb_A 34 GRRRRNRTRRNRRRVRGMNMAALTRLSQPGL 64 (363)
T ss_dssp ----------------------CCCCCHHHH
T ss_pred ccccccchhhhhhhhhhhhhhhhhhccccch
Confidence 344555566655555553 22344455444
No 171
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=20.16 E-value=22 Score=29.55 Aligned_cols=36 Identities=19% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCCCccccccccCCCe-eeEecCCCcchHHhHHHHH
Q psy9087 131 DQTSCVVCMCDFETSQV-LRGLPCSHEFHAKCVDKWL 166 (170)
Q Consensus 131 ~~~~C~ICle~f~~g~~-v~~LPC~H~FH~~CI~~WL 166 (170)
+...|.+|...|..-.. ...-.||++|...|...++
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 35689999999965432 3334599999999987654
Done!