RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9087
(170 letters)
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 89.3 bits (222), Expect = 2e-24
Identities = 37/55 (67%), Positives = 45/55 (81%)
Query: 114 EIESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168
+PS++FN + HQS+QT CVVCMCDFE+ Q+LR LPC+HEFHAKCVDKWLK
Sbjct: 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA 59
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 70.8 bits (174), Expect = 5e-17
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 107 PRGLNRYEIESIPSFKFNASKHQSDQ-TSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKW 165
++ I+++P Q C +C ++ V LPC H FH CV W
Sbjct: 14 NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIW 73
Query: 166 LKI 168
L+
Sbjct: 74 LQK 76
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 69.8 bits (171), Expect = 1e-16
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 127 KHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168
K + C VC+ DF+ L PC H FH KC+ KWL++
Sbjct: 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV 51
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 67.8 bits (166), Expect = 4e-16
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 128 HQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168
+ + C +C+ E + +R LPC H FH CVD+WL
Sbjct: 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT 50
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 60.9 bits (148), Expect = 3e-13
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 127 KHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168
+H C VC D+ + +R LPC+H FH C+ WL+
Sbjct: 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ 51
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 58.0 bits (141), Expect = 2e-12
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 131 DQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWLK 167
D C VC+ + E + R LP C H FHA+CVD WL
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG 41
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 55.0 bits (133), Expect = 3e-11
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 130 SDQTSCVVCMCDFETS-QVLRGLPCSHEFHAKCVDKWLK 167
S + C +C+ D TS V LPC H H C ++ LK
Sbjct: 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK 41
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 53.5 bits (129), Expect = 2e-10
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 127 KHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168
K +D+ C +CM LPC+H F KC+DKW
Sbjct: 10 KQLTDEEECCICMDGRA----DLILPCAHSFCQKCIDKWSDR 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 47.4 bits (113), Expect = 3e-08
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
+ C +C+ D + LPC H F C+ +W++
Sbjct: 3 TVAERCPICLEDPSNYSMA--LPCLHAFCYVCITRWIR 38
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 44.9 bits (106), Expect = 3e-07
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 135 CVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWLK 167
C+ C + + + C+H FH C+ W+K
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK 62
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 42.6 bits (100), Expect = 2e-06
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 130 SDQTSCVVCMCDFETSQVLRG----LPCSHEFHAKCVDKWLK 167
S SC +CM + C H F ++C+ LK
Sbjct: 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 54
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 38.7 bits (90), Expect = 5e-05
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 124 NASKHQSDQTSCVVCMCDFE----TSQVLRGLPCSHEFHAKCVDKWLK 167
S SC +CM + +++ C H F ++C+ LK
Sbjct: 2 TTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 38.7 bits (89), Expect = 1e-04
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 15/64 (23%)
Query: 122 KFNASKHQSDQTSCVVCMCDFET---------------SQVLRGLPCSHEFHAKCVDKWL 166
K+ + + C++CM V R CSH FH C+
Sbjct: 15 KYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY 74
Query: 167 KIGT 170
G
Sbjct: 75 CNGN 78
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 39.8 bits (92), Expect = 2e-04
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 119 PSFKFNASKHQSDQTSCVVCMCDF-----ETSQVLRGLPCSHEFHAKCVDKWLK 167
S + +++ C +C C + HA C+++W K
Sbjct: 295 WSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFK 348
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 36.7 bits (85), Expect = 3e-04
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 132 QTSCVVCMCDFE----TSQVLRGLPCSHEFHAKCVDKWLK 167
SC +CM + +++ C H F ++C+ LK
Sbjct: 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 42
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 34.9 bits (80), Expect = 0.001
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 126 SKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
+ C +C Q C H CV K+ +
Sbjct: 9 ETYPDAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQ 48
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 34.8 bits (80), Expect = 0.003
Identities = 7/40 (17%), Positives = 19/40 (47%)
Query: 129 QSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168
S + C +C+ ++ Q+ C F C+ +++++
Sbjct: 2 SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVEL 41
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 34.5 bits (79), Expect = 0.003
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 124 NASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
+ + ++ C +CM +++ CS C+ +WL
Sbjct: 14 QSVESIAEVFRCFICMEKLRDARLC--PHCSKLCCFSCIRRWLT 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 35.9 bits (82), Expect = 0.004
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 126 SKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
+ S C +C + + ++ PC H C+ W +
Sbjct: 326 CEMGSTFQLCKICAENDKDVKIE---PCGHLMCTSCLTSWQE 364
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 32.9 bits (74), Expect = 0.013
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 129 QSDQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWLK 167
C + + C+H FH C+ +WLK
Sbjct: 48 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 87
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 32.5 bits (74), Expect = 0.013
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
C +C F+ V C H F C + +
Sbjct: 17 RCFICRQAFQNPVVT---KCRHYFCESCALEHFR 47
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 33.9 bits (77), Expect = 0.017
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 121 FKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
++ + C +C Q C H CV K+ +
Sbjct: 169 EQYIRETYPDAVKICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQ 213
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 32.5 bits (73), Expect = 0.024
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 126 SKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
+ C+H FH C+ +WLK
Sbjct: 57 HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 98
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 32.4 bits (73), Expect = 0.026
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 130 SDQTSCVVCMCDFETSQVLRG----LPCSHEFHAKCVDKWLK 167
S SC +CM + C H F ++C+ LK
Sbjct: 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 46
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 31.3 bits (71), Expect = 0.026
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 129 QSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169
C +C+ L PC H F CV +G
Sbjct: 12 SLTVPECAICLQTCVHPVSL---PCKHVFCYLCVKGASWLG 49
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 30.9 bits (70), Expect = 0.036
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 135 CVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
C +C + + C H F C+ +
Sbjct: 18 CSICKGYLIDATTI--TECLHTFCKSCIVRHFY 48
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 30.7 bits (69), Expect = 0.051
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 124 NASKHQSDQTSCVVCMCDFETSQVLRGLPCS-----HEFHAKCVDKWLKI 168
S S Q C +C C+ + L PC H H C+ +W+K
Sbjct: 7 GTSITPSSQDICRICHCEGDDESPLI-TPCHCTGSLHFVHQACLQQWIKS 55
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.067
Identities = 32/214 (14%), Positives = 58/214 (27%), Gaps = 87/214 (40%)
Query: 17 YF---PARAPTIEITRVRHHPV--------PNRSRNSLRRWRGQT-----------LAPS 54
Y P P I + ++ H+ V P R+ L+ G T +A +
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK---GATGHSQGLVTAVAIAET 286
Query: 55 NTYPGLFHLLA-----MFS--SAPLSPYSQAELGSPDSTETVENYEALLSLAERLGEAKP 107
+++ F + +F Y L +++EN E P
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-----------NEGVP 335
Query: 108 ------RGLNRYEIESIPSFKFNASKHQSDQ---------TSCVVC-----MCDFET--- 144
L + +++ + K N+ Q + VV +
Sbjct: 336 SPMLSISNLTQEQVQDYVN-KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 145 ---------------SQ-----VLRGLPCSHEFH 158
S+ R LP + FH
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Score = 30.0 bits (67), Expect = 0.46
Identities = 28/135 (20%), Positives = 40/135 (29%), Gaps = 44/135 (32%)
Query: 17 YFPARAPTIEITRVRHHPVPNRSRNSLRRWR--------------GQ-----------TL 51
Y AR + P +S ++L +R GQ L
Sbjct: 126 YITARI-------MAKRPFDKKSNSAL--FRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 52 APSNTYPGLFHLLAMFSSAPLSPYSQAELGSPDSTETVENYEALLSLAERLGEAKPRGLN 111
TY L L FS+ LS + + E V + L++ E L
Sbjct: 177 --YQTYHVLVGDLIKFSAETLSELIR----TTLDAEKV--FTQGLNILEWLENPSNTPDK 228
Query: 112 RYEIESIP-SFKFNA 125
Y + SIP S
Sbjct: 229 DY-LLSIPISCPLIG 242
Score = 28.1 bits (62), Expect = 1.9
Identities = 29/139 (20%), Positives = 42/139 (30%), Gaps = 45/139 (32%)
Query: 46 WRGQ--TL-APSNTYPGLFHL-LAMFS------SAPLSPY----SQAELGSPDSTETVEN 91
+R + L A T P L + A F P S LG E
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS---LG--------E- 1766
Query: 92 YEALLSLAERLG-EA-----KPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETS 145
Y AL SLA+ + E+ RG ++P + S + M
Sbjct: 1767 YAALASLADVMSIESLVEVVFYRG--MTMQVAVPRDELGRSNYG---------MIAINPG 1815
Query: 146 QVLRGLPCSHEFHAKCVDK 164
+V S E V++
Sbjct: 1816 RV--AASFSQEALQYVVER 1832
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.076
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 100 ERLGEAKPRGLNRYEIESIPSFKFNAS 126
++L +A L Y +S P+ A+
Sbjct: 23 KKL-QAS---LKLYADDSAPALAIKAT 45
Score = 26.1 bits (56), Expect = 5.4
Identities = 5/16 (31%), Positives = 6/16 (37%), Gaps = 6/16 (37%)
Query: 17 YFPARAP------TIE 26
Y AP T+E
Sbjct: 32 YADDSAPALAIKATME 47
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 30.1 bits (68), Expect = 0.095
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 130 SDQTSCVVCMCDF-ETSQVLRGLPCSHEFHAKCVDKWLK 167
+ C +CM F E + L C H +C++K L
Sbjct: 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLA 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 29.7 bits (66), Expect = 0.12
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 125 ASKHQSDQTSCVVCMCDFE-TSQVLRGLPCSHEFHAKCVDKWLK 167
+ + D C +CM E C ++ C +
Sbjct: 4 SPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT 47
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 30.0 bits (67), Expect = 0.24
Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 87 ETVENYEALLSLAERLGEAKPRGLNRYEIESIPSFKFNASKHQSDQTSCVVCMCDFETSQ 146
+ +++EA++ + E + + + +++ C++C F +
Sbjct: 20 RSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQ-CIICSEYFIEAV 78
Query: 147 VLRGLPCSHEFHAKCVDKWLK 167
L C+H F + C+++W+K
Sbjct: 79 TL---NCAHSFCSYCINEWMK 96
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 28.4 bits (63), Expect = 0.27
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 131 DQTSCVVCMCDFETSQVLRGL--PCSHEFHAKCVDKWLKIG 169
D C C + L+ + C H CVD G
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 29.0 bits (65), Expect = 0.35
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 135 CVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
CV+C F + + + C H F C+ ++L+
Sbjct: 18 CVLCGGYFIDATTI--IECLHSFCKTCIVRYLE 48
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 28.0 bits (62), Expect = 0.79
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
+ C+ C C H C+D+ +
Sbjct: 50 EETFQCICCQELVFRPITT---VCQHNVCKDCLDRSFR 84
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 28.1 bits (62), Expect = 1.1
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 115 IESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169
+E I + + C +C+ + PC H F C+ K ++
Sbjct: 1 MEEIQGYDVEFDPPLESKYECPICLMALREAVQT---PCGHRFCKACIIKSIRDA 52
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 28.6 bits (63), Expect = 1.1
Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 3/72 (4%)
Query: 26 EITRVRHHPVPNRSRNSLRRWRGQTLAPSNTYPGLFHLLAMFSSAPLSPYSQAELGSPDS 85
E V H+ + + ++P + LL F L+ S
Sbjct: 87 EGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPI 146
Query: 86 TETVE---NYEA 94
E V +
Sbjct: 147 IEVVVGTFKFTG 158
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 26.2 bits (58), Expect = 1.3
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCVDK 164
C C + + ++L PC H + C++
Sbjct: 8 RCQQCQAEAKCPKLL---PCLHTLCSGCLEA 35
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 27.3 bits (60), Expect = 1.6
Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 9/98 (9%)
Query: 73 SPYSQAELGSPDSTETVENYEALLSLAERLGEAKPRGLNRYEIESIPSFKFNASKHQSDQ 132
SP + + DS E +E ++ + E E+ S N K
Sbjct: 19 SPSASKVYKASDSAEAIEAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEGPNFLKKLEQS 78
Query: 133 TSCVVCMCDFE---TSQVLRGLPCSHEFHAKCVDKWLK 167
CV C T C H C+ + K
Sbjct: 79 FMCVCCQELVYQPVT------TECFHNVCKDCLQRSFK 110
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 27.9 bits (63), Expect = 1.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 92 YEALLSLAERLGEAKPRGLNR 112
++ LA RL P GL+R
Sbjct: 84 SRPVVDLATRLANITPPGLDR 104
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 25.9 bits (57), Expect = 1.9
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 124 NASKHQSDQTSCVVCMCDFETSQVLRGLPCSH 155
+ + CVVC + + VL LPC H
Sbjct: 7 GVEPSEENSKDCVVCQ-NGTVNWVL--LPCRH 35
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 26.8 bits (59), Expect = 2.1
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 129 QSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
+ C +CM L PC+H C ++
Sbjct: 12 SLSECQCGICMEILVEPVTL---PCNHTLCKPCFQSTVE 47
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 26.3 bits (57), Expect = 2.6
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 135 CVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169
C C + R +PC H F C K G
Sbjct: 4 CDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKG 36
>3tqu_A Non-canonical purine NTP pyrophosphatase; HAM1 protein,
hydrolase; HET: MSE; 1.90A {Coxiella burnetii}
Length = 203
Score = 26.3 bits (59), Expect = 4.2
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 65 AMFSSAPLSPYSQAELGSPDSTET----VENYEALL 96
+ + Q E PD ET VEN A++
Sbjct: 22 ELLRDLEIKFIPQTEFSVPDIEETGSTFVEN--AII 55
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 25.1 bits (55), Expect = 5.4
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 127 KHQSDQTSCVVCMCDFETSQVLRGLPCSH 155
+ + C+VC + E + PC H
Sbjct: 13 RKLKEAMLCMVCC-EEEINSTF--CPCGH 38
>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered
Se-Met, structural genomics, putative ribosomal
protein, PSI; HET: MSE; 1.50A {Escherichia coli} SCOP:
c.51.4.1 PDB: 2q16_A* 2pyu_A*
Length = 221
Score = 26.0 bits (58), Expect = 6.4
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 65 AMFSSAPLSPYSQAELGSPDSTET----VENYEALL 96
++ S L +Q +LG + ET +EN A+L
Sbjct: 41 SLLSDFGLDIVAQTDLGVDSAEETGLTFIEN--AIL 74
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 25.3 bits (55), Expect = 6.8
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
+ C C E S++L C +H C+ +K
Sbjct: 52 PECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMK 89
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 25.2 bits (55), Expect = 6.9
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 115 IESIPSFKFNASKHQSDQTSCVVCMCDFETSQVLRG---LPCSHEFHAKCVDKWLKIG 169
+E I + + C +C+ LR PC H F C+ K ++
Sbjct: 1 MEEIQGYDVEFDPPLESKYECPICL------MALREAVQTPCGHRFCKACIIKSIRDA 52
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease,
double strand DNA repair, protein-DNA CO hydrolase-DNA
complex; HET: DNA; 2.80A {Bacillus subtilis} PDB:
3u44_A*
Length = 1232
Score = 26.1 bits (57), Expect = 7.4
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 7/74 (9%)
Query: 40 RNSLRRWRGQTLAPSNTYPGLFHLLAMFSSAPLSPYSQAELGSPDSTETVENYEALLSLA 99
L++WR + + L+ + Y G P + N L A
Sbjct: 695 YGHLQKWRAFSK-----NHSVSELIWEVYRD--TKYMDYVGGMPGGKQRQANLRVLYDRA 747
Query: 100 ERLGEAKPRGLNRY 113
+ RGL R+
Sbjct: 748 RQYESTAFRGLFRF 761
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.416
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,523,119
Number of extensions: 133537
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 70
Length of query: 170
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 83
Effective length of database: 4,272,666
Effective search space: 354631278
Effective search space used: 354631278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)