RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9087
(170 letters)
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 47.6 bits (113), Expect = 7e-09
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 131 DQTSCVVCMCDFETSQVLRGLP-CSHEFHAKCVDKWLK 167
D C VC+ + E + R LP C H FHA+CVD WL
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG 41
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 40.7 bits (95), Expect = 3e-06
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 135 CVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
C +C+ D + LPC H F C+ +W++
Sbjct: 8 CPICLEDPSNYSMA--LPCLHAFCYVCITRWIR 38
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 40.5 bits (94), Expect = 7e-06
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168
S + C +C+ ++ Q+ C F C+ +++++
Sbjct: 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVEL 41
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 39.4 bits (91), Expect = 1e-05
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 131 DQTSCVVCMCDFETSQVLRGL--PCSHEFHAKCVDKWLKIG 169
D C C + L+ + C H CVD G
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG 42
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 38.2 bits (88), Expect = 2e-05
Identities = 6/38 (15%), Positives = 10/38 (26%), Gaps = 1/38 (2%)
Query: 134 SCVVCMCDFE-TSQVLRGLPCSHEFHAKCVDKWLKIGT 170
C +CM E C ++ C +
Sbjct: 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDEN 39
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 38.1 bits (88), Expect = 4e-05
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 130 SDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
S C +C + + ++ PC H C+ W +
Sbjct: 21 STFQLCKICAENDKDVKIE---PCGHLMCTSCLTSWQE 55
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 35.5 bits (81), Expect = 4e-04
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 128 HQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKI 168
+ C+H FH C+ +WLK
Sbjct: 32 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 72
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 34.8 bits (79), Expect = 4e-04
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 131 DQTSCVVCMCDFETSQVL--RGLPCSHEFHAKCVDKWLKI 168
D C +C + + H C+ WL I
Sbjct: 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI 44
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 34.5 bits (79), Expect = 5e-04
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 135 CVVCMCDFETSQVLRGLPCSHEFHAKCVDKW 165
C C + + ++L PC H + C++
Sbjct: 9 CQQCQAEAKCPKLL---PCLHTLCSGCLEAS 36
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 35.0 bits (79), Expect = 0.001
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 147 VLRGLPCSHEFHAKCVDKWLK 167
V R CSH FH C+
Sbjct: 55 VGRLTKCSHAFHLLCLLAMYC 75
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 33.6 bits (76), Expect = 0.002
Identities = 9/43 (20%), Positives = 11/43 (25%), Gaps = 2/43 (4%)
Query: 125 ASKHQSDQTSCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
A C C L C H F + CV +
Sbjct: 15 ALDRLEKLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDCIG 55
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 31.6 bits (71), Expect = 0.013
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
C +C+ + C H F C+ K L
Sbjct: 23 ECPICLELIKEPVST---KCDHIFCKFCMLKLLN 53
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 28.7 bits (64), Expect = 0.096
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLKIG 169
SC +C C H F C+ + LK+
Sbjct: 25 SCQICEHILADPVET---SCKHLFCRICILRCLKVM 57
>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 295
Score = 27.7 bits (61), Expect = 0.79
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 76 SQAELGSPDSTETVENYEALLSLAERLGE-AKPRGLNRYEIESI 118
Q + G+P +E + LL + E LG+ A G N + + +
Sbjct: 252 GQIKTGAPARSERLAKLNQLLRIEEELGDNAVFAGENFHHGDKL 295
>d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 296
Score = 27.6 bits (61), Expect = 0.84
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 76 SQAELGSPDSTETVENYEALLSLAERLGE-AKPRGLN 111
Q + GS T+ + Y LL + ++LGE A+ RGL
Sbjct: 254 GQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYRGLK 290
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 26.5 bits (58), Expect = 1.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 76 SQAELGSPDSTETVENYEALLSLAERLGE 104
Q + GS ++ V Y L+ + E LGE
Sbjct: 250 GQIKTGSMSRSDRVAKYNQLIRIEEALGE 278
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 294
Score = 26.1 bits (57), Expect = 2.5
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 76 SQAELGSPDSTETVENYEALLSLAERLGE-AKPRGLN 111
Q + G+P +E + Y L+ + E LG+ A+ G N
Sbjct: 251 GQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHN 287
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 291
Score = 25.0 bits (54), Expect = 4.8
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 76 SQAELGSPDSTETVENYEALLSLAERLGEA 105
Q + G+P E LL + E LG
Sbjct: 253 GQIKTGAPCRGERTAKLNQLLRIEEELGAH 282
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus)
[TaxId: 10117]}
Length = 66
Score = 23.5 bits (50), Expect = 5.9
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 133 TSCVVC--MCDFETSQVLRGLPCSHEFHAKCVDK 164
T C C + Q ++ C H +CV
Sbjct: 20 TFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRS 53
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 23.4 bits (50), Expect = 5.9
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 134 SCVVCMCDFETSQVLRGLPCSHEFHAKCVDKWLK 167
S +C + ++ C FH C L+
Sbjct: 6 SATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQ 39
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 287
Score = 24.5 bits (52), Expect = 7.4
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 67 FSSAPLSPYSQAELGSPDSTETVENYEALLSLAERLGE 104
F S P + ++G P N E L + E + +
Sbjct: 2 FYSMPRYFQNMPQVGKPLKKADAANEEQLKKIEEEIHQ 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.416
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 621,555
Number of extensions: 26022
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 25
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)