BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9088
(756 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q801S4|K0930_XENLA Uncharacterized protein KIAA0930 homolog OS=Xenopus laevis PE=2
SV=2
Length = 399
Score = 243 bits (621), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/250 (50%), Positives = 174/250 (69%), Gaps = 15/250 (6%)
Query: 74 YWTDLFVRYFLFQTDSNIDCDDLLFFVRKK--YIKTSSRNLPKFETEVEVFRKDSRKLP- 130
+WT ++ YF+ + DD+LF+VR+K Y+ N + + EVEV+RKDS+KLP
Sbjct: 31 FWTWMYSTYFMEKWAPR--QDDMLFYVRRKPAYMGPDG-NEGRKQVEVEVYRKDSKKLPG 87
Query: 131 IGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVYASPSRRRMDTK 190
+GDPD+DWEE+VYLN+I+ + DY +T A+CTR+ + + K+ SQ+V+ASPS+ MD+K
Sbjct: 88 LGDPDIDWEESVYLNLILQKLDYMVTCAVCTRSDAGDIHIHKKKSQQVFASPSKHPMDSK 147
Query: 191 GEVEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSIRYDAL 250
GE +++YP + F +DNF EVF D+ V +GEMVCVELVA D+ + + VIF GSIRY+AL
Sbjct: 148 GEESKISYPNIFFMIDNFEEVFSDMTVGEGEMVCVELVARDKTNTFQGVIFQGSIRYEAL 207
Query: 251 KRVYDARTSVSNKFTQRMSFGIFSNNSNSRIEFVKMKGPQGKGFAEMAVTK-----PKGY 305
K+VYD R SV+ K Q+MSFG + N+ +EFV+MKGPQGKG AEMAV++ Y
Sbjct: 208 KKVYDNRVSVAAKMAQKMSFGFYKYNN---MEFVRMKGPQGKGHAEMAVSRVSTGDTSPY 264
Query: 306 GVETPTSEPG 315
G E S PG
Sbjct: 265 GTEE-DSNPG 273
>sp|Q6ICG6|K0930_HUMAN Uncharacterized protein KIAA0930 OS=Homo sapiens GN=KIAA0930 PE=1
SV=1
Length = 404
Score = 239 bits (610), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 118/235 (50%), Positives = 166/235 (70%), Gaps = 12/235 (5%)
Query: 74 YWTDLFVRYFLFQTDSNIDCDDLLFFVRKKYIKTSS------RNLPKFETEVEVFRKDSR 127
+WT +F YF+ + D D+LF+VR+K + S R + E EVEV+R+DS+
Sbjct: 31 FWTWMFSTYFMEKWAPRQD--DMLFYVRRKLAYSGSESGADGRKAAEPEVEVEVYRRDSK 88
Query: 128 KLP-IGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVYASPSRRR 186
KLP +GDPD+DWEE+V LN+I+ + DY +T A+CTR + + K+ SQ+V+ASPS+
Sbjct: 89 KLPGLGDPDIDWEESVCLNLILQKLDYMVTCAVCTRADGGDIHIHKKKSQQVFASPSKHP 148
Query: 187 MDTKGEVEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSIR 246
MD+KGE +++YP + F +D+F EVF D+ V +GEMVCVELVASD+ + + VIF GSIR
Sbjct: 149 MDSKGEESKISYPNIFFMIDSFEEVFSDMTVGEGEMVCVELVASDKTNTFQGVIFQGSIR 208
Query: 247 YDALKRVYDARTSVSNKFTQRMSFGIFSNNSNSRIEFVKMKGPQGKGFAEMAVTK 301
Y+ALK+VYD R SV+ + Q+MSFG + S +EFV+MKGPQGKG AEMAV++
Sbjct: 209 YEALKKVYDNRVSVAARMAQKMSFGFY---KYSNMEFVRMKGPQGKGHAEMAVSR 260
>sp|Q4G008|K0930_RAT Uncharacterized protein KIAA0930 homolog OS=Rattus norvegicus PE=2
SV=2
Length = 404
Score = 229 bits (583), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 118/236 (50%), Positives = 166/236 (70%), Gaps = 13/236 (5%)
Query: 74 YWTDLFVRYFLFQTDSNIDCDDLLFFVRKKYIKTSS-------RNLPKFETEVEVFRKDS 126
+WT +F YF+ + DD+LF+VR+K T S + + E EVEV+R+DS
Sbjct: 31 FWTWMFSTYFMEKLAPR--QDDMLFYVRRKRAYTGSESTADGRKAEAEPEVEVEVYRRDS 88
Query: 127 RKLP-IGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVYASPSRR 185
+KLP +GDPD+DWEE+V LN+I+ + DY +T A+CTR + + ++ SQ+V+ASPS+
Sbjct: 89 KKLPGLGDPDIDWEESVCLNLILQKLDYMVTCAVCTRADGGDIHIHRKKSQQVFASPSKH 148
Query: 186 RMDTKGEVEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSI 245
MD+KGE +M+YP + F +D+F EVF D+ V +GEMVCVELVASD+ + VIF GSI
Sbjct: 149 PMDSKGEESKMSYPNIFFMIDSFEEVFSDMTVGEGEMVCVELVASDKTNMFQGVIFQGSI 208
Query: 246 RYDALKRVYDARTSVSNKFTQRMSFGIFSNNSNSRIEFVKMKGPQGKGFAEMAVTK 301
RY+ALK+VYD R SV+ + Q+MSFG + N+ +EFV+MKGPQGKG AEMAV++
Sbjct: 209 RYEALKKVYDNRVSVAARMAQKMSFGFYKYNN---MEFVRMKGPQGKGHAEMAVSR 261
>sp|Q3UE31|K0930_MOUSE Uncharacterized protein KIAA0930 homolog OS=Mus musculus PE=1 SV=2
Length = 404
Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 164/242 (67%), Gaps = 25/242 (10%)
Query: 74 YWTDLFVRYFLFQTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVE------------- 120
+WT +F YF+ + D D+LF+VR+K R P E ++
Sbjct: 31 FWTWMFSTYFMEKLAPRQD--DMLFYVRRK------RAYPGNEGTIDGRKAEAEPEVEVE 82
Query: 121 VFRKDSRKLP-IGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVY 179
V+R+DS+KLP +GDPD+DWEE+V LN+I+ + DY +T A+CTR + + ++ SQ+V+
Sbjct: 83 VYRRDSKKLPGLGDPDIDWEESVCLNLILQKLDYMVTCAVCTRADGGDIHIHRKKSQQVF 142
Query: 180 ASPSRRRMDTKGEVEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSV 239
ASPS+ MD+KGE +M+YP + F +D+F EVF D+ V +GEMVCVELVASD+ + + V
Sbjct: 143 ASPSKHPMDSKGEESKMSYPNIFFMIDSFEEVFSDMTVGEGEMVCVELVASDKTNTFQGV 202
Query: 240 IFLGSIRYDALKRVYDARTSVSNKFTQRMSFGIFSNNSNSRIEFVKMKGPQGKGFAEMAV 299
IF GSIRY+ALK+VYD R SV+ + Q+MSFG + N+ +EFV+MKGPQGKG AEMAV
Sbjct: 203 IFQGSIRYEALKKVYDNRVSVAARMAQKMSFGFYKYNN---MEFVRMKGPQGKGHAEMAV 259
Query: 300 TK 301
++
Sbjct: 260 SR 261
>sp|Q3SWZ4|EXOS9_BOVIN Exosome complex component RRP45 OS=Bos taurus GN=EXOSC9 PE=2 SV=1
Length = 440
Score = 179 bits (455), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 87/177 (49%), Positives = 122/177 (68%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ VL QVSC +V PK R EG+LF N ELS MA+P FE GRQ+D V +NR LE+C +
Sbjct: 53 TRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRN 112
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
SKCID ESLCVVA EKVW +RVDL++LN+DGN++ SIAA+ AL HFR PDV+ GD++
Sbjct: 113 SKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEV 172
Query: 574 IIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQK 630
+++ E+DP+P++I H P+ +S+A F G+ P E +D L ++ ++ +
Sbjct: 173 TLYTLEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHR 229
>sp|Q06265|EXOS9_HUMAN Exosome complex component RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3
Length = 439
Score = 179 bits (453), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 122/177 (68%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ VL QVSC +V PK R EG+LF N ELS MA+P FE GRQ+D V +NR +E+C +
Sbjct: 53 TRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRN 112
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
SKCID ESLCVVA EKVW +RVDL++LN+DGN++ SIAA+ AL HFR PDV+ GD++
Sbjct: 113 SKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEV 172
Query: 574 IIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQK 630
+++ E+DP+P++I H P+ +S+A F G+ P E +D L ++ ++ +
Sbjct: 173 TLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHR 229
>sp|Q4QR75|EXOS9_RAT Exosome complex component RRP45 OS=Rattus norvegicus GN=Exosc9 PE=2
SV=1
Length = 437
Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 122/177 (68%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ VL QVSC +V PK R EG+LF N ELS MA+P FE GRQ+D V +NR LE+C +
Sbjct: 53 TRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRN 112
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
SKCID ESLCVVA EKVW +RVDL++LN+DGN++ SIAA+ AL HFR PDV+ G+++
Sbjct: 113 SKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEV 172
Query: 574 IIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQK 630
+++ E+DP+P++I H P+ +S+A F G+ P E +D L ++ ++ +
Sbjct: 173 TLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHR 229
>sp|Q9JHI7|EXOS9_MOUSE Exosome complex component RRP45 OS=Mus musculus GN=Exosc9 PE=2 SV=1
Length = 438
Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 122/177 (68%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ VL QVSC +V PK R EG+LF N ELS MA+P FE GRQ+D V +NR LE+C +
Sbjct: 53 TRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRN 112
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
SKCID ESLCVVA EKVW +RVDL++LN+DGN++ SIAA+ AL HFR PDV+ G+++
Sbjct: 113 SKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEV 172
Query: 574 IIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQK 630
+++ E+DP+P++I H P+ +S+A F G+ P E +D L ++ ++ +
Sbjct: 173 TLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHR 229
>sp|O74918|RRP45_SCHPO Exosome complex component rrp45 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp45 PE=3 SV=1
Length = 291
Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 100/150 (66%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ V+A+++ + P RP +G+ I EL+P+A FE GR +D ++I+R +EK +
Sbjct: 54 TRVMARITTEITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRR 113
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
S +D ESLC+++ +K W+VR ++ +N+DGNL+ IA +AAL HFR P++T G+++
Sbjct: 114 SNALDTESLCIISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGEEV 173
Query: 574 IIHSAAEKDPIPMTILHYPVTISYAVFNGG 603
+H E+ P+P++ILH P+ ++++ FN G
Sbjct: 174 TVHPVEERVPVPLSILHMPICVTFSFFNNG 203
>sp|Q05636|RRP45_YEAST Exosome complex component RRP45 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP45 PE=1 SV=1
Length = 305
Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 116/213 (54%), Gaps = 12/213 (5%)
Query: 390 MRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENGEAVWCP 449
M +++ A + + Q + + + + DV+ + + +S + G
Sbjct: 1 MAKDIEISASESKFILEALRQNYRL--DGRSFDQFRDVEITFGKEFGDVSVKMGN----- 53
Query: 450 WVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQT-DTSVMINRFLE 508
++V ++SC + P RP EGL I+ E+SPMA QFE G T + V+ +R +E
Sbjct: 54 ----TKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIE 109
Query: 509 KCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTS 568
K + S +D+E LC+VA K W VR D++ L+ DG + IA +A L HF+ PD+T
Sbjct: 110 KSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITV 169
Query: 569 TGDQIIIHSAAEKDPIPMTILHYPVTISYAVFN 601
G+QII+H E++P+P+ ILH P+ ++++ FN
Sbjct: 170 HGEQIIVHPVNEREPVPLGILHIPICVTFSFFN 202
>sp|C5A2B8|ECX2_THEGJ Probable exosome complex exonuclease 2 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2035 PE=3 SV=1
Length = 273
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 32/249 (12%)
Query: 384 EIEAGDMRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENG 443
EI AG MRD + + KE KR +D S E + I + G
Sbjct: 5 EIMAGIMRDRI-----------------LNLLKEGKR------IDGRSFEEYRDIEIKTG 41
Query: 444 ---EAVWCPWVK--PSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTD 498
+A WV+ + VL + ++ P P+ G++ N EL P+ASP FE G +
Sbjct: 42 FIEKAEGSAWVRLGGTRVLVGIKVDVGEPFPDLPDRGVMTTNVELVPLASPTFEPGPPDE 101
Query: 499 TSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAAL 558
++ + R +++ +ES+ ++LE L +V + V V +D++VL++DGNL +AA+AAL
Sbjct: 102 RAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVFIDVHVLDHDGNLFDATGLAAMAAL 161
Query: 559 AHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQL 618
+ P V + I E +P+P+ H P+ +++A GS P E +
Sbjct: 162 MTTKIPKVEYNEETGEIIKLDEYEPLPVK--HVPIPVTFAKI--GSSIIVDPNLDEETVM 217
Query: 619 DTALALSQD 627
D+ L ++ D
Sbjct: 218 DSRLTITTD 226
>sp|O59224|ECX2_PYRHO Probable exosome complex exonuclease 2 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1548 PE=3 SV=1
Length = 274
Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 22/244 (9%)
Query: 384 EIEAGDMRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENG 443
EI AG MRD + + KE KR D D+ E I E
Sbjct: 5 EIVAGIMRDHI-----------------INLLKEGKRIDDRGFEDYRPIEIEVGI-IEKA 46
Query: 444 EAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMI 503
E + ++VL + + P PN G++ N EL P+ASP FE G + ++ +
Sbjct: 47 EGSALVKLGSTQVLVGIKTTLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIEL 106
Query: 504 NRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRH 563
R ++ +ES+ ++LE + +V + V V +D++VL++DGNL+ IA++AAL + +
Sbjct: 107 ARVTDRGIRESRALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIASIAALLNAKV 166
Query: 564 PDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALA 623
P V + + EK+P+P+ + PVT + G+ P E + +D L
Sbjct: 167 PKVEYNEETGEVEILEEKEPLPVERIPIPVTFAKI----GNILVVDPSLEEELVMDGRLT 222
Query: 624 LSQD 627
++ D
Sbjct: 223 VTTD 226
>sp|B6YSE7|ECX2_THEON Probable exosome complex exonuclease 2 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0031 PE=3 SV=1
Length = 272
Score = 96.3 bits (238), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 19/229 (8%)
Query: 410 QTFHFWKESKRA-----QDWTDVDFMSSENWTSISAENGEAVWCPWVK--PSEVLAQVSC 462
KE KR +D+ D++ I G A WVK ++VL +
Sbjct: 14 HILALLKEGKRVDGRSLEDYRDLEI----KINVIEKAEGSA----WVKLGNTQVLVGIKV 65
Query: 463 NMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESL 522
+M P P +G++ N EL P+ASP FE G + ++ + R +++ +ES ++LE L
Sbjct: 66 DMGEPFPDLPEKGVITTNVELVPLASPSFEPGPPDERAIELARVVDRGIRESGAVELEKL 125
Query: 523 CVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKD 582
+V + V V +D++VL++DGNLL I A+AAL + P V + + E +
Sbjct: 126 VIVPGKLVRVVFIDVHVLDHDGNLLDASGIGAIAALMSAKMPKVVYDEESGEVQILDEYE 185
Query: 583 PIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQKL 631
P+P++ + PVTI+ G P E + +D + ++ D +
Sbjct: 186 PLPVSKMPIPVTIAKV----GGNLLVDPNLDEELVMDGRITITTDENGM 230
>sp|Q8U0M0|ECX2_PYRFU Probable exosome complex exonuclease 2 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1567 PE=3 SV=1
Length = 277
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 20/215 (9%)
Query: 384 EIEAGDMRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENG 443
EI AG MRD + + KE KR D D+ E + E
Sbjct: 5 EIVAGIMRDYI-----------------LNLLKEKKRIDDRGFEDYRPIEVEVGV-IEKA 46
Query: 444 EAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMI 503
E + ++VL + + P PN G++ N EL P+ASP FE G + ++ +
Sbjct: 47 EGSALVKLGNTQVLVGIKATLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIEL 106
Query: 504 NRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRH 563
R +++ +ES+ ++LE + + + V V +D++VL++DGNL+ I A+AAL + R
Sbjct: 107 ARVIDRGIRESRALNLEKMVIAPGKIVRVVFIDVHVLDHDGNLMDAIGIGAIAALLNARV 166
Query: 564 PDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYA 598
P V + + EK+P+P+ P+++++A
Sbjct: 167 PKVLYNEETGEVEILEEKEPLPVE--KIPISVTFA 199
>sp|Q8TYC2|ECX2_METKA Probable exosome complex exonuclease 2 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0380 PE=3 SV=1
Length = 267
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 7/188 (3%)
Query: 438 ISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQT 497
IS NG A+ + ++++ V + P PNEG L +NAEL P+A P FE G
Sbjct: 42 ISKANGSALV--RLGNTQLVVGVKLEVGRPYPDSPNEGALAVNAELVPLADPSFEPGPPD 99
Query: 498 DTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAA 557
+ ++ ++R +++ +ES+ IDLE LC+ E W VD++VL++DGNL I +++A
Sbjct: 100 ENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVLDHDGNLFDASMIGSVSA 159
Query: 558 LAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQ 617
L+ P D++ E+D P+ I +P++++ A G P E +
Sbjct: 160 LSITEVPKAEVVDDEV---EVMEEDTEPLAINDFPISVTIAKV--GEYLLVDPCLEEEVI 214
Query: 618 LDTALALS 625
+DT L ++
Sbjct: 215 MDTRLTVT 222
>sp|Q975G9|ECX2_SULTO Probable exosome complex exonuclease 2 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04420 PE=3 SV=1
Length = 275
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 4/144 (2%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
VLA V P PN+G L +N EL P+A FE G + ++ + R +++ ++SK
Sbjct: 63 VLAGVKLEEEEPFPDTPNQGNLVVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSK 122
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
+DL L ++ +KVW VD+ VL+Y GN+L C++AA+AAL + + P V GD + I
Sbjct: 123 AVDLSKLVIIPGKKVWTAWVDVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEGDNVKI 182
Query: 576 HSAAEKDPIPMTILHYP-VTISYA 598
+ D P+ YP VT++ A
Sbjct: 183 IKEEKTDVTPIA---YPVVTVTVA 203
>sp|Q5JIR7|ECX2_PYRKO Probable exosome complex exonuclease 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1633 PE=3
SV=1
Length = 272
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 105/218 (48%), Gaps = 5/218 (2%)
Query: 410 QTFHFWKESKRAQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKA 469
+E KR + D+ E ++ + + W + ++VL + + P
Sbjct: 14 HIIELLREGKRIDGRSFEDYRDLEIKVNVIEKAEGSAWV-RLGDTQVLVGIKAELGEPFP 72
Query: 470 TRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEK 529
P+ G++ N EL P+ASP FE G + ++ + R +++ +ES+ +DLE L +V +
Sbjct: 73 DLPDRGVITTNVELVPLASPTFEPGPPDENAIELARVVDRGIRESQAVDLEKLVIVPGKL 132
Query: 530 VWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTIL 589
V + +D++VL++ GNLL I A+AAL + P V + + E +P+P+
Sbjct: 133 VRVIFIDVHVLDHGGNLLDASGIGAIAALLSTKLPKVNYNEETGEVEILDEYEPLPVN-- 190
Query: 590 HYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD 627
H P+ +++A G+ P E +D L ++ D
Sbjct: 191 HVPIPVTFAKI--GNSIVVDPSLDEERVMDGRLTITTD 226
>sp|Q9YC05|ECX2_AERPE Probable exosome complex exonuclease 2 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1445 PE=3 SV=1
Length = 276
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
++V+A V + P PN+G+L ++AE P+ASP FE G + ++ + R +++ +E
Sbjct: 61 TQVIAGVKAGVGAPFKDTPNQGVLTVHAEFVPLASPVFEPGPPDENAIELARVVDRSLRE 120
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHP--DVTSTGD 571
+DLESL + EKVW + VDL ++++DGNL +A +A L R P + + TG+
Sbjct: 121 VGAVDLESLVIRPGEKVWVLWVDLYIIDHDGNLFDASMLATMAVLLTARLPRYEESETGE 180
Query: 572 QII 574
II
Sbjct: 181 III 183
>sp|Q0W2Y7|ECX2_UNCMA Probable exosome complex exonuclease 2 OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_09920 PE=3 SV=1
Length = 260
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 69/112 (61%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
S+V+ V P P+ G++ N EL P+ASP FE+G + ++ + R +++ +E
Sbjct: 56 SQVVVGVKIQPGEPFPDTPDSGVIITNLELVPLASPTFESGPPREDAIELARVVDRGVRE 115
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPD 565
S IDL LC+ + +KVW V +D++VL++DGNL+ S+ A+AAL + P+
Sbjct: 116 SGAIDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDAASLGAIAALKATKIPN 167
>sp|Q97BZ4|ECX2_THEVO Probable exosome complex exonuclease 2 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0311 PE=3 SV=1
Length = 260
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 68/111 (61%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ V+A V P P++G+L N EL P+A P FE G D ++ ++R +++ +E
Sbjct: 59 TRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRE 118
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHP 564
SK I + L + +KVW V +D+NVL+YDGNL+ C+IAA++AL + P
Sbjct: 119 SKMISPDKLVIEQGKKVWIVFLDINVLDYDGNLIDACTIAAVSALRNAIVP 169
>sp|Q9HIP1|ECX2_THEAC Probable exosome complex exonuclease 2 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1294 PE=3 SV=2
Length = 260
Score = 86.3 bits (212), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 4/139 (2%)
Query: 433 ENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFE 492
EN+ I NG A + + V+A V P P++G+L N EL P+A P FE
Sbjct: 42 ENY--IPRANGSAYVA--LGNTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFPSFE 97
Query: 493 TGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSI 552
G D ++ ++R +++ +ESK I E L + +KVW V +D+NVL+YDGNL+ +I
Sbjct: 98 AGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVFLDINVLDYDGNLIDASTI 157
Query: 553 AALAALAHFRHPDVTSTGD 571
AA+AAL + P G+
Sbjct: 158 AAVAALRNAVVPASKEGGE 176
>sp|Q9V118|ECX2_PYRAB Probable exosome complex exonuclease 2 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06110 PE=1 SV=1
Length = 274
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 105/213 (49%), Gaps = 18/213 (8%)
Query: 384 EIEAGDMRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENG 443
EI AG MRD + + KE KR D D+ E + E
Sbjct: 5 EIVAGIMRDHI-----------------INLLKEGKRIDDRGFEDYRPIEIEVGV-IEKA 46
Query: 444 EAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMI 503
E + ++VL + ++ P PN G++ N EL P+ASP FE G + ++ +
Sbjct: 47 EGSALVKLGSTQVLVGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIEL 106
Query: 504 NRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRH 563
R +++ +ESK ++LE + +V + V V +D++VL++DGNL+ IAA+AAL + R
Sbjct: 107 ARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARV 166
Query: 564 PDVTSTGDQIIIHSAAEKDPIPMTILHYPVTIS 596
P V + + + E +P+P+ + PVT +
Sbjct: 167 PKVRYNEETGEVETLDETEPLPVEKIPVPVTFA 199
>sp|Q8TGX5|ECX2_METAC Probable exosome complex exonuclease 2 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_1776 PE=3 SV=1
Length = 266
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 10/145 (6%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
++VL V P +EG++ N EL+P+ASP+FE G + ++ + R +++ +E
Sbjct: 58 TQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRE 117
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
S ID++ LC+ E VW V +D++VLN DGN++ +AA+AAL P+
Sbjct: 118 SGAIDIKKLCITVGESVWIVFIDVHVLNDDGNIIDASCLAAIAALMTTMVPN-------- 169
Query: 574 IIHSAAEKDPIPMTILHYPVTISYA 598
+ +P+ + PV I+ A
Sbjct: 170 --EQQGLGEDVPLAMKEMPVGITIA 192
>sp|O26778|ECX2_METTH Probable exosome complex exonuclease 2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_682 PE=1 SV=1
Length = 271
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 79/133 (59%), Gaps = 1/133 (0%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
++++ V + P P G++ N+EL PMASP FE G + SV ++R +++C +E
Sbjct: 58 TQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRE 117
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
S+ IDLE LC++ KVW + +DL++++YDGNL +A +AAL R P ++
Sbjct: 118 SRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEV 177
Query: 574 IIHSAAEKDPIPM 586
+I+ + P+P+
Sbjct: 178 VINR-EKMQPLPV 189
>sp|Q8PTT7|ECX2_METMA Probable exosome complex exonuclease 2 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2624 PE=3 SV=1
Length = 266
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 77/145 (53%), Gaps = 10/145 (6%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
++VL V P +EG++ N EL+P+ASP+FE G + ++ + R +++ +E
Sbjct: 58 TQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRGIRE 117
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
S ID++ LC+ E VW V +D+++LN DGN++ +AA+AAL P+
Sbjct: 118 SGAIDIKKLCITVGESVWIVFIDVHILNNDGNIIDASCLAAIAALMTTMVPN-------- 169
Query: 574 IIHSAAEKDPIPMTILHYPVTISYA 598
+ +P+ + PV I+ A
Sbjct: 170 --EQQGLGENVPLAMKEMPVGITLA 192
>sp|Q96B26|EXOS8_HUMAN Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1
Length = 276
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 4/190 (2%)
Query: 413 HFWKESKRAQDWTDVDFMSSE-NWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATR 471
F KE+ R +F ++ N SIS +G A+ + + V+ V P
Sbjct: 16 RFLKENCRPDGRELGEFRTTTVNIGSISTADGSALV--KLGNTTVICGVKAEFAAPSTDA 73
Query: 472 PNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVW 531
P++G + N +L P+ S +F +G + + + ++F+ + S+ I E LC+ + VW
Sbjct: 74 PDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVW 133
Query: 532 NVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHY 591
+ DL L+YDGN+L C+ A LAAL + + P+VT + + +K + I +
Sbjct: 134 VLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSY-LNIRTH 192
Query: 592 PVTISYAVFN 601
PV S+AVF+
Sbjct: 193 PVATSFAVFD 202
>sp|Q9UXC0|ECX2_SULSO Probable exosome complex exonuclease 2 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0732 PE=1 SV=1
Length = 275
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 4/144 (2%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
VLA + P PN+G L +N EL P+A FE G + ++ + R +++ ++SK
Sbjct: 63 VLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSK 122
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
+DL L + + VW V +D+ VL+Y GN+L C++A++AAL + + V + I +
Sbjct: 123 ALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISV 182
Query: 576 HSAAEKDPIPMTILHYP-VTISYA 598
+ +P L+YP VTIS A
Sbjct: 183 NKNEVVGKLP---LNYPVVTISVA 203
>sp|Q2KHU3|EXOS8_BOVIN Exosome complex component RRP43 OS=Bos taurus GN=EXOSC8 PE=2 SV=1
Length = 276
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 95/189 (50%), Gaps = 4/189 (2%)
Query: 414 FWKESKRAQDWTDVDFMSSE-NWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRP 472
F KE+ R +F ++ N SI +G A+ + + V+ + P P
Sbjct: 17 FLKENCRPDGRELGEFRTTTVNVGSIGTADGSALV--KLGNTTVICGIKAEFGAPPTDAP 74
Query: 473 NEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWN 532
++G + N +LSP+ S +F +G + + + ++F+ + S+ I E LC+ + + W
Sbjct: 75 DKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISSGKLAWV 134
Query: 533 VRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYP 592
+ DL LN+DGN+L C+ A LAAL + + P+VT + + +K + I +P
Sbjct: 135 LYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSC-LNIRTHP 193
Query: 593 VTISYAVFN 601
V S+AVF+
Sbjct: 194 VATSFAVFD 202
>sp|Q9D753|EXOS8_MOUSE Exosome complex component RRP43 OS=Mus musculus GN=Exosc8 PE=2 SV=1
Length = 276
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 4/190 (2%)
Query: 413 HFWKESKRAQDWTDVDFMSSE-NWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATR 471
F KE+ R +F ++ N SIS +G A+ + + V+ V P
Sbjct: 16 RFLKENCRPDGRELGEFRATTVNIGSISTADGSALV--KLGNTTVICGVKAEFAAPPVDA 73
Query: 472 PNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVW 531
P+ G + N +L P+ S +F TG + + + ++F+ S+ I E LC+ + W
Sbjct: 74 PDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPGKLAW 133
Query: 532 NVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHY 591
+ DL L+YDGN+L C+ A LAAL + + P+VT + + +K + +
Sbjct: 134 VLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSY-LNVRTN 192
Query: 592 PVTISYAVFN 601
PV S+AVF+
Sbjct: 193 PVATSFAVFD 202
>sp|C3NED0|ECX2_SULIY Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=YG5714_1402 PE=3
SV=1
Length = 275
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
VLA + P PN+G L +N EL P+A FE G + ++ + R +++ ++SK
Sbjct: 63 VLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSK 122
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
+DL L + + VW V +D+ VL+Y GN+L C++A++AAL + + V + +
Sbjct: 123 ALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRV 182
Query: 576 HSAAEKDPIPMTILHYPVTISYA 598
+ +P+ H VT+S A
Sbjct: 183 NKNEVVGKLPLN--HPVVTVSIA 203
>sp|C3MVG5|ECX2_SULIM Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=M1425_1407 PE=3 SV=1
Length = 275
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
VLA + P PN+G L +N EL P+A FE G + ++ + R +++ ++SK
Sbjct: 63 VLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSK 122
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
+DL L + + VW V +D+ VL+Y GN+L C++A++AAL + + V + +
Sbjct: 123 ALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYKVEQDSNGFRV 182
Query: 576 HSAAEKDPIPMTILHYPVTISYA 598
+ +P+ H VT+S A
Sbjct: 183 NKNEVVGKLPLN--HPVVTVSIA 203
>sp|C3MQ47|ECX2_SULIL Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=LS215_1502 PE=3 SV=1
Length = 275
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
VLA + P PN+G L +N EL P+A FE G + ++ + R +++ ++SK
Sbjct: 63 VLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSK 122
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
+DL L + + VW V +D+ VL+Y GN+L C++A++AAL + + V + +
Sbjct: 123 ALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRV 182
Query: 576 HSAAEKDPIPMTILHYPVTISYA 598
+ +P+ H VT+S A
Sbjct: 183 NKNEVVGKLPLN--HPVVTVSIA 203
>sp|C4KHE3|ECX2_SULIK Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=M164_1401 PE=3 SV=1
Length = 275
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
VLA + P PN+G L +N EL P+A FE G + ++ + R +++ ++SK
Sbjct: 63 VLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSK 122
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
+DL L + + VW V +D+ VL+Y GN+L C++A++AAL + + V + +
Sbjct: 123 ALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRV 182
Query: 576 HSAAEKDPIPMTILHYPVTISYA 598
+ +P+ H VT+S A
Sbjct: 183 NKNEVVGKLPLN--HPVVTVSIA 203
>sp|C3N5R4|ECX2_SULIA Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain M.16.27) GN=M1627_1457 PE=3 SV=1
Length = 275
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
VLA + P PN+G L +N EL P+A FE G + ++ + R +++ ++SK
Sbjct: 63 VLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSK 122
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
+DL L + + VW V +D+ VL+Y GN+L C++A++AAL + + V + +
Sbjct: 123 ALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYKVEQDSNGFRV 182
Query: 576 HSAAEKDPIPMTILHYPVTISYA 598
+ +P+ H VT+S A
Sbjct: 183 NKNEVVGKLPLN--HPVVTVSIA 203
>sp|C3NHC2|ECX2_SULIN Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=YN1551_1441 PE=3
SV=1
Length = 275
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
VLA + P PN+G L +N EL P+A FE G + ++ + R +++ ++SK
Sbjct: 63 VLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSK 122
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
+DL L + + VW V +D+ VL+Y GN+L C++A++AAL + + V + +
Sbjct: 123 ALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRV 182
Query: 576 HSAAEKDPIPMTILHYPVTISYA 598
+ +P+ H VT+S A
Sbjct: 183 NKNEVVGKLPLN--HPVVTVSIA 203
>sp|Q8ZVN0|ECX2_PYRAE Probable exosome complex exonuclease 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2206 PE=3 SV=1
Length = 274
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 9/181 (4%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ V+A V + P P+EG+L +NAE+ P ASP E G + ++ + R +++ +
Sbjct: 62 THVVAGVKVGLGQPFPDAPDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRGIRH 121
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
+D + L V K + + +DL V+N DGNL+ ++A++AAL + + P V +
Sbjct: 122 CGYVDFKKLAVEG-GKAYVLWIDLYVINDDGNLIDVANLASVAALKNTQLPVVVKDEAGV 180
Query: 574 IIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTV---PGFTECIQLDTALALSQDRQK 630
+ K P+P+ I P+ +S G G+ + P F E + LD + + K
Sbjct: 181 VKLDRNNKAPLPVDISKAPIAVSV-----GKIGNVLFLDPTFEEELSLDGRITFTFSEDK 235
Query: 631 L 631
+
Sbjct: 236 I 236
>sp|O29756|ECX2_ARCFU Probable exosome complex exonuclease 2 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0494 PE=1 SV=1
Length = 259
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
++V+ V P P+ G++ +NAEL P+ASP FE G + S+ + R +++ +E
Sbjct: 56 TQVVVGVKMQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRE 115
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGN 545
S+ +DL L + EKVW V VD++ L+ DGN
Sbjct: 116 SEAVDLSKLVIEEGEKVWIVFVDIHALDDDGN 147
>sp|Q10205|RRP43_SCHPO Exosome complex component rrp43 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp43 PE=3 SV=1
Length = 270
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 438 ISAENGEAVWCPWVKPSE--VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGR 495
IS NG A+ ++ E + + + P PNEG + N ELSP+ S +F+ G
Sbjct: 54 ISTANGSAI----IRAGENVFVCGIKAEIAEPFENSPNEGWIVPNLELSPLCSSKFKPGP 109
Query: 496 QTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAAL 555
+D + ++++ L + ++S I+L+SLC+ ++ W + D+ LNYDG+ A
Sbjct: 110 PSDLAQVVSQELHQTLQQSNLINLQSLCIFEKKAAWVLYADIICLNYDGSAFDYAWAALF 169
Query: 556 AALAHFRHP 564
AAL + P
Sbjct: 170 AALKTVKLP 178
>sp|Q15024|EXOS7_HUMAN Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3
Length = 291
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 58/119 (48%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+++L V M PK +PNEG L + S A+P+FE D I L + F
Sbjct: 56 TDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNN 115
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQ 572
+DL++LC+ E W + VD+ +L GNL SIA AAL + R P V D+
Sbjct: 116 KSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDE 174
>sp|Q9D0M0|EXOS7_MOUSE Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=2
SV=2
Length = 291
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 57/119 (47%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+++L V M PK +PNEG L + S A+P+FE D I L + F
Sbjct: 56 TDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNN 115
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQ 572
+DL SLC+ E W + VD+ +L GNL SIA AAL + R P V D+
Sbjct: 116 KSSVDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDE 174
>sp|A1TXH7|POTA_MARAV Spermidine/putrescine import ATP-binding protein PotA
OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM
11845 / VT8) GN=potA PE=3 SV=1
Length = 373
Score = 37.4 bits (85), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 535 VDLNVLNYDGNLL------GCCSIAALAALAHFRHPD--VTSTGDQIIIHSAAEKDPIPM 586
+DL++ +DG + GC L +A F HPD + GDQ + H+ E P+
Sbjct: 24 LDLDI--FDGEFITLLGPSGCGKTTLLRMMAGFEHPDDGTIALGDQDLTHTPPEHRPLNT 81
Query: 587 TILHYPVTISYAVFNGGSEG 606
+Y + +VF+ + G
Sbjct: 82 VFQNYALFPHMSVFDNVAYG 101
>sp|A8Z1S8|UVRC_STAAT UvrABC system protein C OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=uvrC PE=3 SV=1
Length = 593
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 31 GEDESILKSTTTLEQLL---EEINFQRAKEKRQYLRNDMFLTQGTSYW-TDLFVR-YFLF 85
GED++ILKS E++L E ++F+RAKE R +++ LT +D +R F +
Sbjct: 196 GEDKTILKSLE--ERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGY 253
Query: 86 QTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVF 122
D C + F + IK + +P +TE E F
Sbjct: 254 SVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEF 290
>sp|A6QG48|UVRC_STAAE UvrABC system protein C OS=Staphylococcus aureus (strain Newman)
GN=uvrC PE=3 SV=1
Length = 593
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 31 GEDESILKSTTTLEQLL---EEINFQRAKEKRQYLRNDMFLTQGTSYW-TDLFVR-YFLF 85
GED++ILKS E++L E ++F+RAKE R +++ LT +D +R F +
Sbjct: 196 GEDKTILKSLE--ERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGY 253
Query: 86 QTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVF 122
D C + F + IK + +P +TE E F
Sbjct: 254 SVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEF 290
>sp|Q5HGT7|UVRC_STAAC UvrABC system protein C OS=Staphylococcus aureus (strain COL)
GN=uvrC PE=3 SV=1
Length = 593
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 31 GEDESILKSTTTLEQLL---EEINFQRAKEKRQYLRNDMFLTQGTSYW-TDLFVR-YFLF 85
GED++ILKS E++L E ++F+RAKE R +++ LT +D +R F +
Sbjct: 196 GEDKTILKSLE--ERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGY 253
Query: 86 QTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVF 122
D C + F + IK + +P +TE E F
Sbjct: 254 SVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEF 290
>sp|Q2YXC9|UVRC_STAAB UvrABC system protein C OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=uvrC PE=3 SV=1
Length = 593
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 31 GEDESILKSTTTLEQLL---EEINFQRAKEKRQYLRNDMFLTQGTSYW-TDLFVR-YFLF 85
GED++ILKS E++L E ++F+RAKE R +++ LT +D +R F +
Sbjct: 196 GEDKTILKSLE--ERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGY 253
Query: 86 QTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVF 122
D C + F + IK + +P +TE E F
Sbjct: 254 SVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEF 290
>sp|Q2FZD0|UVRC_STAA8 UvrABC system protein C OS=Staphylococcus aureus (strain NCTC 8325)
GN=uvrC PE=3 SV=2
Length = 593
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 31 GEDESILKSTTTLEQLL---EEINFQRAKEKRQYLRNDMFLTQGTSYW-TDLFVR-YFLF 85
GED++ILKS E++L E ++F+RAKE R +++ LT +D +R F +
Sbjct: 196 GEDKTILKSLE--ERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGY 253
Query: 86 QTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVF 122
D C + F + IK + +P +TE E F
Sbjct: 254 SVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEF 290
>sp|Q2FHT5|UVRC_STAA3 UvrABC system protein C OS=Staphylococcus aureus (strain USA300)
GN=uvrC PE=3 SV=2
Length = 593
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 31 GEDESILKSTTTLEQLL---EEINFQRAKEKRQYLRNDMFLTQGTSYW-TDLFVR-YFLF 85
GED++ILKS E++L E ++F+RAKE R +++ LT +D +R F +
Sbjct: 196 GEDKTILKSLE--ERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGY 253
Query: 86 QTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVF 122
D C + F + IK + +P +TE E F
Sbjct: 254 SVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEF 290
>sp|Q8NX55|UVRC_STAAW UvrABC system protein C OS=Staphylococcus aureus (strain MW2)
GN=uvrC PE=3 SV=1
Length = 593
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 31 GEDESILKSTTTLEQLL---EEINFQRAKEKRQYLRNDMFLTQGTSYW-TDLFVR-YFLF 85
GED++ILKS E++L E ++F+RAKE R +++ LT +D +R F +
Sbjct: 196 GEDKTILKSLE--ERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGY 253
Query: 86 QTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVF 122
D C + F + IK + +P +TE E F
Sbjct: 254 SVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEF 290
>sp|Q6GA68|UVRC_STAAS UvrABC system protein C OS=Staphylococcus aureus (strain MSSA476)
GN=uvrC PE=3 SV=1
Length = 593
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 31 GEDESILKSTTTLEQLL---EEINFQRAKEKRQYLRNDMFLTQGTSYW-TDLFVR-YFLF 85
GED++ILKS E++L E ++F+RAKE R +++ LT +D +R F +
Sbjct: 196 GEDKTILKSLE--ERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGY 253
Query: 86 QTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVF 122
D C + F + IK + +P +TE E F
Sbjct: 254 SVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEF 290
>sp|Q9ZEH3|UVRC_STAAU UvrABC system protein C OS=Staphylococcus aureus GN=uvrC PE=3 SV=1
Length = 593
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 31 GEDESILKSTTTLEQLL---EEINFQRAKEKRQYLRNDMFLTQGTSYW-TDLFVR-YFLF 85
GED++ILKS E++L E ++F+RAKE R +++ LT +D +R F +
Sbjct: 196 GEDKTILKSLE--ERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGY 253
Query: 86 QTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVF 122
D C + F + IK + +P +TE E F
Sbjct: 254 SVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEF 290
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 285,622,219
Number of Sequences: 539616
Number of extensions: 12373961
Number of successful extensions: 34428
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 34282
Number of HSP's gapped (non-prelim): 197
length of query: 756
length of database: 191,569,459
effective HSP length: 125
effective length of query: 631
effective length of database: 124,117,459
effective search space: 78318116629
effective search space used: 78318116629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)