Query psy9088
Match_columns 756
No_of_seqs 258 out of 1314
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 18:33:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2po1_B Probable exosome comple 100.0 1E-45 3.5E-50 385.7 24.2 263 397-679 7-277 (277)
2 2je6_A RRP42, exosome complex 100.0 3.1E-45 1.1E-49 381.5 25.8 254 389-651 2-263 (277)
3 2nn6_C Exosome complex exonucl 100.0 3.2E-45 1.1E-49 381.2 22.4 249 396-651 4-260 (278)
4 2wnr_A Probable exosome comple 100.0 5.2E-44 1.8E-48 371.2 25.1 246 396-651 4-257 (271)
5 3m7n_G Probable exosome comple 100.0 1.3E-43 4.4E-48 366.9 26.8 230 405-651 11-248 (259)
6 2wp8_A Exosome complex compone 100.0 2.1E-44 7.3E-49 380.5 21.3 247 397-651 4-271 (305)
7 2nn6_A Polymyositis/scleroderm 100.0 2.1E-43 7.3E-48 381.9 24.2 250 394-651 17-274 (358)
8 2nn6_E Exosome complex exonucl 100.0 2.4E-43 8E-48 373.0 17.4 265 394-677 15-291 (305)
9 2wnr_B Probable exosome comple 100.0 3.6E-36 1.2E-40 307.8 25.1 202 413-651 10-222 (240)
10 2nn6_B Exosome complex exonucl 100.0 4.3E-36 1.5E-40 309.0 24.5 209 403-651 3-224 (249)
11 2po1_A Probable exosome comple 100.0 3.8E-35 1.3E-39 302.0 25.3 202 413-651 10-222 (249)
12 2je6_B RRP41, exosome complex 100.0 2.5E-34 8.6E-39 295.8 25.3 216 414-677 15-241 (250)
13 3b4t_A Ribonuclease PH; RNAse, 100.0 3.3E-34 1.1E-38 297.0 24.5 225 417-675 4-243 (262)
14 1r6l_A Ribonuclease PH; beta-a 100.0 6.8E-34 2.3E-38 290.3 24.7 209 419-651 2-225 (239)
15 1udn_A Ribonuclease PH, RNAse 100.0 3.9E-34 1.3E-38 295.6 23.1 223 419-676 1-238 (255)
16 3m7n_D Probable exosome comple 100.0 6.5E-34 2.2E-38 295.3 24.3 204 413-651 10-225 (258)
17 2wp8_B Exosome complex compone 100.0 6.8E-34 2.3E-38 292.0 22.8 200 414-651 7-220 (246)
18 1oys_A Ribonuclease PH; transf 100.0 6.5E-34 2.2E-38 292.0 20.0 209 419-651 1-225 (245)
19 3dd6_A Ribonuclease PH; exorib 100.0 2E-33 6.7E-38 291.2 23.1 215 413-651 5-235 (255)
20 2nn6_D Exosome complex exonucl 100.0 2.8E-32 9.6E-37 278.8 22.5 195 413-651 10-218 (237)
21 3hkm_A OS03G0854200 protein; R 100.0 8.8E-32 3E-36 277.6 20.7 193 417-651 2-218 (246)
22 2nn6_F MTR3, exosome component 100.0 4.9E-32 1.7E-36 282.1 16.6 199 416-651 23-247 (272)
23 3cdi_A Polynucleotide phosphor 100.0 2.9E-28 1E-32 283.3 16.4 221 397-653 301-537 (723)
24 3gme_A Polyribonucleotide nucl 100.0 1.5E-27 5.3E-32 269.5 20.3 222 394-651 292-529 (549)
25 3u1k_A Polyribonucleotide nucl 99.9 1.7E-27 5.9E-32 273.3 19.2 218 396-651 298-542 (630)
26 1e3p_A Guanosine pentaphosphat 99.9 1.7E-27 5.9E-32 277.9 18.9 219 397-651 336-574 (757)
27 4aid_A Polyribonucleotide nucl 99.9 1.3E-26 4.4E-31 268.9 20.0 241 397-673 311-574 (726)
28 3krn_A Protein C14A4.5, confir 99.9 1.5E-25 5.1E-30 227.5 -2.5 181 426-651 2-193 (222)
29 3u1k_A Polyribonucleotide nucl 99.8 8.2E-19 2.8E-23 201.7 19.8 181 431-651 17-212 (630)
30 3cdi_A Polynucleotide phosphor 99.8 2.8E-18 9.6E-23 199.9 17.1 180 431-651 22-217 (723)
31 4aid_A Polyribonucleotide nucl 99.7 1.5E-15 5.1E-20 176.7 20.9 180 431-652 30-226 (726)
32 3gme_A Polyribonucleotide nucl 99.6 2.7E-15 9.3E-20 170.0 19.2 179 431-651 16-211 (549)
33 1e3p_A Guanosine pentaphosphat 99.5 5.5E-13 1.9E-17 156.3 23.7 179 431-651 39-252 (757)
34 1whu_A Polynucleotide phosphor 61.9 2.6 8.9E-05 37.6 1.3 18 413-430 86-103 (104)
No 1
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=1e-45 Score=385.74 Aligned_cols=263 Identities=24% Similarity=0.346 Sum_probs=234.5
Q ss_pred cccCcchhcccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCCCCCCCcc
Q psy9088 397 GAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEG 475 (756)
Q Consensus 397 ~~~~rL~p~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~~~P~eG 475 (756)
+.+-...|..|+. ++|++++|+|||+++|+| +.+++|.+++|+|||++ ++|+|+|+|+|++++..|..+.|++|
T Consensus 7 ~~~~s~~~~~~i~---~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v--~~G~T~Vl~~V~~~~~~p~~~~~~~g 81 (277)
T 2po1_B 7 NEIVAGIMRDHII---NLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALV--KLGSTQVLVGIKTSLGEPFPDTPNMG 81 (277)
T ss_dssp ----CCHHHHHHH---HHHHTTCCTTSCCTTCCCCEEEEECCSTTSSEEEEE--EETTEEEEEEEEEEEECCCTTCTTSC
T ss_pred ccccCccHHHHHH---HHHhcCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEE--EECCeEEEEEEEecccCCCCCCCCce
Confidence 4566778999999 899999999999999999 89999999999999998 49999999999999988988889999
Q ss_pred EEEEEEEeCCCCCcCcccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHH
Q psy9088 476 LLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAAL 555 (756)
Q Consensus 476 ~L~VnVe~sP~asp~fr~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~ 555 (756)
+|.++++++|+|++.|++|++++.+++++++|+++|+++++||+++|||.||+++|.|+||++||++|||++|||++|++
T Consensus 82 ~l~~~~~~~p~a~~~~~~g~~~~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~~a~i~aa~ 161 (277)
T 2po1_B 82 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAI 161 (277)
T ss_dssp EEEEEEEECGGGCTTCCSSSCCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHH
T ss_pred EEEEEEEeCCCccccccCCCCChHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCceeecCCceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE-------e
Q psy9088 556 AALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD-------R 628 (756)
Q Consensus 556 AAL~dtrIP~V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~-------~ 628 (756)
+||.++++|++.++++...+... .+..|+.|+++|+++|||++++ .+++|||.+||..+++.++|+++ +
T Consensus 162 ~AL~da~~p~~~~~~~~~~~~~~--~~~~~ipl~~~~~avs~g~~~~--~~l~Dp~~~Ee~~~~~~~~v~~~~~g~i~~l 237 (277)
T 2po1_B 162 AALLNARVPKVRYNEETGEVETL--DETEPLPVEKIPVPVTFAKIGN--ILVVDPSLDEELVMDGKITITTDETGHISAV 237 (277)
T ss_dssp HHHHHCEEEEEEECTTTCCEEEE--EEEEECCBCCCCEEEEEEEETT--EEEESCCHHHHHHCSEEEEEEECTTSCEEEE
T ss_pred HHHHhcCCCcEEEeCCCceeecc--cccccccccCceEEEEEEEECC--EEEeCCCHHHHhhCCCcEEEEEcCCCCEEEE
Confidence 99999999999998764433332 3344566679999999999998 89999999999999999999987 6
Q ss_pred ecccccccCHHHHHHHHHHHHhhCccccCcceeeeecccchHHHhhhccCC
Q psy9088 629 QKLGVDSAYANLVNKTDRILLDEGEKDSGETKVKVEKVGPGIADLISKSDI 679 (756)
Q Consensus 629 Qk~G~g~~t~e~l~kai~lAld~~~~~sk~~~~~v~~~~~~i~~~l~~~~~ 679 (756)
|+.|+++++.+++.+|+++|... ..++-..+.++|.+.+|
T Consensus 238 q~~g~~~~~~~~l~~~l~~A~~~-----------~~~l~~~~~~~l~~~~~ 277 (277)
T 2po1_B 238 QKSEGGAFKLEEVMYAVETAFKK-----------AEEIRKLILEAVEKAKQ 277 (277)
T ss_dssp EEESSCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTC
T ss_pred EccCCCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhccC
Confidence 67777899999999999999988 56666667777766554
No 2
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=3.1e-45 Score=381.47 Aligned_cols=254 Identities=23% Similarity=0.345 Sum_probs=232.3
Q ss_pred CCccccCccccCcchhcccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCC
Q psy9088 389 DMRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIP 467 (756)
Q Consensus 389 ~i~de~~~~~~~rL~p~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P 467 (756)
.++.+|..+++.++.|..|+. ++|++++|+|||+++|+| +.+++|.+++|+|||++ +.|+|+|+|+|++++..|
T Consensus 2 ~~~~~~~~~~~~s~~~~~~i~---~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v--~~G~T~Vl~~V~~~~~~p 76 (277)
T 2je6_A 2 HMSSTPSNQNIIPIIKKESIV---SLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALV--KLGTTMVLAGTKLEIDKP 76 (277)
T ss_dssp CCEECCCCSSCCCHHHHHHHT---TTGGGTBCTTSCBTTCCCCEEEEETCSTTSSEEEEE--EETTEEEEEEEEEEEECC
T ss_pred CccccccccccccccHHHHHH---HHHhcCCCCCCCCcCcccCeEEEeCCcCCCCeEEEE--EECCeEEEEEEEeeeeCC
Confidence 467788999999999999999 899999999999999999 89999999999999999 499999999999999888
Q ss_pred CCCCCCccEEEEEEEeCCCCCcCcccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchh
Q psy9088 468 KATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLL 547 (756)
Q Consensus 468 ~~~~P~eG~L~VnVe~sP~asp~fr~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLl 547 (756)
..+.|++|+|.++++++|+|++.+++|++++.+++++++|+++|+++++||+++|||.||+++|.|+||++||++|||++
T Consensus 77 ~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~~~ 156 (277)
T 2je6_A 77 YEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVL 156 (277)
T ss_dssp CTTCTTCCEEEEEEEECTTSCTTCCCSSCCHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHH
T ss_pred CCCCCCccEEEEEEEeCCccCcccccCCCChHHHHHHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCCHH
Confidence 87789999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCceeecCCceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE
Q psy9088 548 GCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD 627 (756)
Q Consensus 548 DAaslAa~AAL~dtrIP~V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~ 627 (756)
|||++|+++||.++++|.+.+.++++.+...+ +..|+.++++|+++|||++++ .+++|||.+||..+++.++|+++
T Consensus 157 ~aai~aa~~AL~~a~~p~v~~~~~~~~~~~~~--~~~~ip~~~~~~avsvg~~~~--~~l~Dpt~~Ee~~~~~~l~va~~ 232 (277)
T 2je6_A 157 DACTLASVAALYNTKVYKVEQHSNGISVNKNE--VVGKLPLNYPVVTISVAKVDK--YLVVDPDLDEESIMDAKISFSYT 232 (277)
T ss_dssp HHHHHHHHHHHHTCEEEEEECC---CEEEEEE--EEEECCCSCCCEEEEEEEETT--EEEESCCHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCeEEecCCcceEeccC--ccccccccCCeEEEEEEEECC--EEecCCCHHHHhcCCCcEEEEEe
Confidence 99999999999999999999987766555433 344555679999999999988 89999999999999999999987
Q ss_pred -------eecccccccCHHHHHHHHHHHHhh
Q psy9088 628 -------RQKLGVDSAYANLVNKTDRILLDE 651 (756)
Q Consensus 628 -------~Qk~G~g~~t~e~l~kai~lAld~ 651 (756)
+|+.|.++++.+++.+|+++|...
T Consensus 233 ~~g~i~~v~~~g~~~~~~~~l~~~l~~A~~~ 263 (277)
T 2je6_A 233 PDLKIVGIQKSGKGSMSLQDIDQAENTARST 263 (277)
T ss_dssp TTCCEEEEEEESSSCEEHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 556666889999999999998877
No 3
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=3.2e-45 Score=381.25 Aligned_cols=249 Identities=24% Similarity=0.391 Sum_probs=225.6
Q ss_pred ccccCcchhcccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCCCCCCCc
Q psy9088 396 DGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNE 474 (756)
Q Consensus 396 ~~~~~rL~p~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~~~P~e 474 (756)
+++|.++.|..|+. ++|++++|+|||+++|+| +.+++|.+++|+|||++. .|+|+|+|+|++++..|...+|++
T Consensus 4 ~~~~~~~~~~~~~~---~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~--~G~T~Vl~~V~~~~~~p~~~~~~~ 78 (278)
T 2nn6_C 4 AAGFKTVEPLEYYR---RFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVK--LGNTTVICGVKAEFAAPSTDAPDK 78 (278)
T ss_dssp -----CCSTHHHHH---HHHHTSCCTTSCCSCCCCSCCEEETCCSSSSEEEEEE--ETTEEEEEEEEEEECCCCSSSTTC
T ss_pred hhhhhhhCHHHHHH---HHHhcCCCCCCCCcccccCeEEEeCCccCCCceEEEE--eCCeEEEEEEEEEeecCCCCCCCc
Confidence 45899999999999 999999999999999999 899999999999999994 999999999999999888888999
Q ss_pred cEEEEEEEeCCCCCcCcccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHH
Q psy9088 475 GLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAA 554 (756)
Q Consensus 475 G~L~VnVe~sP~asp~fr~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa 554 (756)
|+|.++++++|+|++.|++|++++.+++++++|+++|+++.+||+++|||.||+++|.|+||++||++|||++|||++|+
T Consensus 79 g~l~v~~~~~p~a~~~~~~g~~~~~~~~~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa 158 (278)
T 2nn6_C 79 GYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFAL 158 (278)
T ss_dssp CCCEEEEECCSSSCTTSCSSSCCHHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTTHHHHHHH
T ss_pred cEEEEEEEeCCccCccccCCCCcHHHHHHHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCceeecCCceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE-------
Q psy9088 555 LAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD------- 627 (756)
Q Consensus 555 ~AAL~dtrIP~V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~------- 627 (756)
++||.+++||.+.+.++.-. ...++++..++.++++|+++|||+++++ .+++|||.+||..+++.++|+++
T Consensus 159 ~~AL~~a~iP~v~~~~~~~~-~~~~~~~~~~lp~~~~~~avs~g~~~~~-~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~ 236 (278)
T 2nn6_C 159 LAALKNVQLPEVTINEETAL-AEVNLKKKSYLNIRTHPVATSFAVFDDT-LLIVDPTGEEEHLATGTLTIVMDEEGKLCC 236 (278)
T ss_dssp HHHHHTCCCCCCCBCSSSBC-CCTTSCCCSCSCCSCCCEEEEEEECTTT-CCEESCCTTTTTSCSEEEEEEECTTCCEEE
T ss_pred HHHHHhCCCCeEEEeCCCcc-eecCcccccccccCCceEEEEEEEECCc-eEEECCCHHHHhhcCceEEEEEcCCCcEEE
Confidence 99999999999998765321 2235567788888999999999999873 69999999999999999999987
Q ss_pred eecccccccCHHHHHHHHHHHHhh
Q psy9088 628 RQKLGVDSAYANLVNKTDRILLDE 651 (756)
Q Consensus 628 ~Qk~G~g~~t~e~l~kai~lAld~ 651 (756)
+|+.|+++++.+++.+|+++|...
T Consensus 237 v~~~g~~~~~~~~l~~~l~~a~~~ 260 (278)
T 2nn6_C 237 LHKPGGSGLTGAKLQDCMSRAVTR 260 (278)
T ss_dssp EEESCCSCCCHHHHHHHHHHHHHH
T ss_pred EEccCCCCCCHHHHHHHHHHHHHH
Confidence 556676689999999999998877
No 4
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=5.2e-44 Score=371.20 Aligned_cols=246 Identities=26% Similarity=0.421 Sum_probs=222.5
Q ss_pred ccccCcchhcccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCCCCCCCc
Q psy9088 396 DGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNE 474 (756)
Q Consensus 396 ~~~~~rL~p~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~~~P~e 474 (756)
...|..+.|..|+. ++|++++|+|||+++|+| +.+++|.+++|+|||++. .|+|+|+|+|++++..|..+.|++
T Consensus 4 ~~~~~s~~~~~~~~---~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~--~G~T~Vl~~V~~~~~~p~~~~~~~ 78 (271)
T 2wnr_A 4 KMDIIPEITRKSIT---DLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVK--LGNTQIIVGVKPQIGEPFPDTPEM 78 (271)
T ss_dssp -----CCHHHHHHH---HHHHTTCCTTCCCTTCCCCEEEEESCSTTSSEEEEEE--ETTEEEEEEEEEEEECCCTTCTTC
T ss_pred ccccccccHHHHHH---HHHhcCCCCCCCCcccccCeEEEeCccCCCCeEEEEE--ECCeEEEEEEEeeeecCCCCCCCc
Confidence 34678889999999 899999999999999999 899999999999999984 999999999999988888778999
Q ss_pred cEEEEEEEeCCCCCcCcccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHH
Q psy9088 475 GLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAA 554 (756)
Q Consensus 475 G~L~VnVe~sP~asp~fr~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa 554 (756)
|+|.++++++|+|++.+++|++++.+++++++|+++|+++++||+++|||.||+++|.|+||++||++|||++|||++|+
T Consensus 79 g~l~v~~~~~p~a~~~~~~g~~~~~~~~~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa 158 (271)
T 2wnr_A 79 GVILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLAT 158 (271)
T ss_dssp CEEEEEEEECGGGCTTCCCSSCCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHH
T ss_pred eEEEEEEEeCCcccccccCCCCchHHHHHHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCceeecCCceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE-------
Q psy9088 555 LAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD------- 627 (756)
Q Consensus 555 ~AAL~dtrIP~V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~------- 627 (756)
++||.++++|++.+++++..+ .. .+..++.++++|+++|||++++ .+++|||.+||..+++.++|+++
T Consensus 159 ~~AL~~a~~p~~~~~~~~~~~-~~--~~~~~ip~~~~~~avt~g~~~~--~~l~Dpt~~Ee~~~~~~l~va~~~~~~i~~ 233 (271)
T 2wnr_A 159 VAALLDTRIPAAEVEDGEVVI-NR--EKMQPLPVNRKALMCTFAKIGN--EIVLDPSLEEEDILTARISIGVTEEGSICA 233 (271)
T ss_dssp HHHHHHCEEEEEEEETTEEEE-EE--EEEEECCBCCCEEEEEEEEETT--EEEESCCHHHHTTCSEEEEEEEETTSCEEE
T ss_pred HHHHHhcCCCeEEecCCceee-cc--CcccccCccCCeEEEEEEEECC--EEEeCCCHHHHhcCCCcEEEEEeCCCCEEE
Confidence 999999999999998766333 22 3444566679999999999998 89999999999999999999987
Q ss_pred eecccccccCHHHHHHHHHHHHhh
Q psy9088 628 RQKLGVDSAYANLVNKTDRILLDE 651 (756)
Q Consensus 628 ~Qk~G~g~~t~e~l~kai~lAld~ 651 (756)
+|+.|+++++.+++.+|+++|...
T Consensus 234 i~~~g~~~~~~~~l~~~l~~a~~~ 257 (271)
T 2wnr_A 234 MQKGGEGPLTRDDVLKAVSIAVEK 257 (271)
T ss_dssp EEEESSSCBCHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHHHHHHH
Confidence 556666889999999999998877
No 5
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=1.3e-43 Score=366.89 Aligned_cols=230 Identities=26% Similarity=0.355 Sum_probs=214.9
Q ss_pred cccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCCCCCCCccEEEEEEEe
Q psy9088 405 MRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAEL 483 (756)
Q Consensus 405 ~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~~~P~eG~L~VnVe~ 483 (756)
..|+. ++|++++|+|||+++|+| +.+++|.+++|+|||++ +.|+|+|+|+|++++..|..+.|++|+|.+++++
T Consensus 11 ~~~i~---~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v--~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~ 85 (259)
T 3m7n_G 11 RDYVL---SKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALV--KLGDTQVVVGVKMQPGEPYPDTPDRGVIIVNAEL 85 (259)
T ss_dssp HHHHH---HHHHTTCCTTCCCTTCCCCEEEEETSSTTSSEEEEE--EETTEEEEEEEEEEEECCCSSCTTSCEEEEEEEC
T ss_pred HHHHH---HHHhcCCCCCCCCCccccCeEEEeCCcCCCCceEEE--EECCcEEEEEEEecccCCCCCCCCceEEEEEEEe
Confidence 56777 899999999999999999 89999999999999999 4999999999999998888888999999999999
Q ss_pred CCCCCcCcccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhCCC
Q psy9088 484 SPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRH 563 (756)
Q Consensus 484 sP~asp~fr~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dtrI 563 (756)
+|+|++.|++|++++.+++++++|++.|+++++||+++|||.||+++|.|+||++||++|||++|||++|+++||.+++|
T Consensus 86 ~p~a~~~~~~g~~~~~~~~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~i 165 (259)
T 3m7n_G 86 VPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKV 165 (259)
T ss_dssp CTTSCTTCCSSSSCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHTCEE
T ss_pred CCcccccccCCCCChHHHHHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCCceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE-------eeccccccc
Q psy9088 564 PDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD-------RQKLGVDSA 636 (756)
Q Consensus 564 P~V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~-------~Qk~G~g~~ 636 (756)
|++.+.++ +..||.++++|+++|+|++++ .+++|||.+||+.+++.++|+++ +|+.|++++
T Consensus 166 P~~~~~~~----------~~~~lp~~~~~~avtvg~~~~--~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~g~~~~ 233 (259)
T 3m7n_G 166 PAERFDLG----------EDYLLPVRDLPVSVTSLIVGN--KYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKSGGYLL 233 (259)
T ss_dssp CTGGGTSS----------SCEECCBCCCCEEEEEEEETT--EEEESCCTTGGGGCSCEEEEEECTTSCEEEEEEESSCCB
T ss_pred CeEEecCC----------ceecccccCceeEEEEEEECC--EEEECCCHHHHhhCCCcEEEEEeCCCcEEEEECCCCCCc
Confidence 99887643 244677889999999999998 89999999999999999999987 567777899
Q ss_pred CHHHHHHHHHHHHhh
Q psy9088 637 YANLVNKTDRILLDE 651 (756)
Q Consensus 637 t~e~l~kai~lAld~ 651 (756)
+.+++.+|+++|...
T Consensus 234 ~~~~l~~~l~~a~~~ 248 (259)
T 3m7n_G 234 DEKLFDELLDVSINC 248 (259)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998876
No 6
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-44 Score=380.47 Aligned_cols=247 Identities=30% Similarity=0.501 Sum_probs=206.3
Q ss_pred cccCcchhcccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCCCCCCCcc
Q psy9088 397 GAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEG 475 (756)
Q Consensus 397 ~~~~rL~p~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~~~P~eG 475 (756)
+++-...|..|+. ++|.+++|+|||+++|+| +.+++| +|+|||++. .|+|+|||+|++++..|..+.|++|
T Consensus 4 ~~~~s~~e~~~i~---~~l~~~~R~DGR~~~e~R~i~i~~g---~a~GSa~v~--~G~T~Vl~~V~~~~~~p~~~~~~~g 75 (305)
T 2wp8_A 4 DIEISASESKFIL---EALRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVK--MGNTKVHCRISCQIAQPYEDRPFEG 75 (305)
T ss_dssp ---CCHHHHHHHH---HHHTTTCCTTSCCTTCCCCEEEEEC---SSTTEEEEE--ETTEEEEEEEEEEEC-CCSSCTTCC
T ss_pred ccccCcCHHHHHH---HHHhhCCCCCCCCCcccCCeEEEEc---CCCcEEEEE--ECCeEEEEEEeccccCCcccCCCCc
Confidence 4455567888998 789999999999999999 899999 899999994 9999999999999999988889999
Q ss_pred EEEEEEEeCCCCCcCcccCCCC-hhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHH
Q psy9088 476 LLFINAELSPMASPQFETGRQT-DTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAA 554 (756)
Q Consensus 476 ~L~VnVe~sP~asp~fr~Gr~s-e~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa 554 (756)
.+.++|+++|++++.|++|+++ +.+++++++|+++|+++.+||+++|||.||+++|.|+||++||++|||++|||++|+
T Consensus 76 ~~~~~ve~~~~~~~~~~~g~~~~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~dAai~aa 155 (305)
T 2wp8_A 76 LFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAV 155 (305)
T ss_dssp EEEEEECCC----------------------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHH
T ss_pred EEEEEEEECCCCCccccCCCCChhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHHHHHHHHH
Confidence 9999999999999999889988 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCceeecCCceEEecCCCCCCCCcccCCceEEEEEEEeC--------Cc----eeEEEeCChhHhhhcCCce
Q psy9088 555 LAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFN--------GG----SEGSTVPGFTECIQLDTAL 622 (756)
Q Consensus 555 ~AAL~dtrIP~V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~--------d~----~~iLvDPT~eEE~~sda~L 622 (756)
++||.++++|.+.+.++++.++..+++++.+|.++++|+++|||+++ ++ ..+|+|||.+||.++++.+
T Consensus 156 ~~AL~~a~iP~~~~~~~~~~i~~~~~~~~~~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l 235 (305)
T 2wp8_A 156 MAGLMHFKKPDITVHGEQIIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVL 235 (305)
T ss_dssp HHHHHHCEECCCBCTTSSCCBCCSSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHHHHHHCSEEE
T ss_pred HHHHHHhCCCeEEecCCceEecccccccccccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHHHHhccCCcE
Confidence 99999999999999888888888888999999999999999999997 21 3799999999999999999
Q ss_pred EEEEE-------eecccccccCHHHHHHHHHHHHhh
Q psy9088 623 ALSQD-------RQKLGVDSAYANLVNKTDRILLDE 651 (756)
Q Consensus 623 tVav~-------~Qk~G~g~~t~e~l~kai~lAld~ 651 (756)
+|+++ +|+.|+++++.+++.+|+++|...
T Consensus 236 ~Va~~~~g~i~~l~~~g~~~~~~~~l~~~l~~A~~~ 271 (305)
T 2wp8_A 236 TVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSI 271 (305)
T ss_dssp EEEECTTSEEEEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcEEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 99987 567776789999999999999888
No 7
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.1e-43 Score=381.86 Aligned_cols=250 Identities=38% Similarity=0.606 Sum_probs=231.3
Q ss_pred cCccccCcchhcccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCCCCCC
Q psy9088 394 LDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRP 472 (756)
Q Consensus 394 ~~~~~~~rL~p~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~~~P 472 (756)
|.-+..-...|..|+. ++|++++|+|||+++|+| +.+++| +|+|||++ ++|+|+|||+|++++..|..++|
T Consensus 17 ~~~~~~~s~~e~~~i~---~~L~~g~R~DGR~~~e~R~i~ie~g---~A~GSa~v--~~G~T~VL~tV~~e~~~p~~~~~ 88 (358)
T 2nn6_A 17 HMKETPLSNCERRFLL---RAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIV--ELGKTRVLGQVSCELVSPKLNRA 88 (358)
T ss_dssp -CCCCCCCHHHHHHHH---HHHHTTCCTTSCCTTCCCCCEEEEC---SSTTEEEE--ESSSCEEEEEECCEEECCCSTTT
T ss_pred ccccccccHhHHHHHH---HHHhcCCCCCCCCccccCCeEEEEe---cCCcEEEE--EECCcEEEEEEEecccCCcccCC
Confidence 5555666778899999 789999999999999999 799999 99999998 49999999999999999988889
Q ss_pred CccEEEEEEEeCCCCCcCcccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHH
Q psy9088 473 NEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSI 552 (756)
Q Consensus 473 ~eG~L~VnVe~sP~asp~fr~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAasl 552 (756)
++|+|.++|+++|+|++.|++|++++.+++++++|+++|+++.++|+++|||.||+++|.|+||++||++|||++|||++
T Consensus 89 ~~g~l~~~v~~~p~a~~~~~~g~~s~~e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~~dAai~ 168 (358)
T 2nn6_A 89 TEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASI 168 (358)
T ss_dssp TSCCEEEEEEECTTTCSSCCSSSTHHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHH
T ss_pred CCcEEEEEEEecCCccccccCCCCCHHHHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCceeecCCceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE-----
Q psy9088 553 AALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD----- 627 (756)
Q Consensus 553 Aa~AAL~dtrIP~V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~----- 627 (756)
|+++||.++++|.+.+.++++.++..+++++.+|.++++|+++|||++..+..+|+|||.+||.++++.++|+++
T Consensus 169 Aa~aAL~da~iP~v~~~~~~v~i~~~~~~~~~~l~i~~~p~avsvgl~~~~~~illDPt~~Ee~~~~~~l~Va~t~~g~I 248 (358)
T 2nn6_A 169 AAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREI 248 (358)
T ss_dssp HHHHHHHHCCCCCCBCCTTCCBCCHHHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEEEEEETTTEE
T ss_pred HHHHHHHHhCcCcEEeeCCeeEecccccccccccCccCCEEEEEEEEEeeCCEEEECCCHHHHhhcCccEEEEEcCCCeE
Confidence 999999999999999988888887777888999999999999999998332279999999999999999999987
Q ss_pred --eecccccccCHHHHHHHHHHHHhh
Q psy9088 628 --RQKLGVDSAYANLVNKTDRILLDE 651 (756)
Q Consensus 628 --~Qk~G~g~~t~e~l~kai~lAld~ 651 (756)
+|+.|+.+++.+++.+|+++|...
T Consensus 249 ~~lqk~G~~~ls~~~l~~~l~~A~~~ 274 (358)
T 2nn6_A 249 CTIQSSGGIMLLKDQVLRCSKIAGVK 274 (358)
T ss_dssp EEEEEESCCCCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 667777789999999999999888
No 8
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.4e-43 Score=373.02 Aligned_cols=265 Identities=23% Similarity=0.250 Sum_probs=229.7
Q ss_pred cCccccCcchhcccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCCCCCC
Q psy9088 394 LDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRP 472 (756)
Q Consensus 394 ~~~~~~~rL~p~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~~~P 472 (756)
|....++ ..+..|+. ++|++++|+|||+++|+| +.+++|.+++|+|||++ ++|+|+|+|+|++++..|..+.|
T Consensus 15 ~~~~~~s-~~e~~~i~---~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v--~~G~T~Vl~~V~~e~~~p~~~~~ 88 (305)
T 2nn6_E 15 MASVTLS-EAEKVYIV---HGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARV--KLGHTDILVGVKAEMGTPKLEKP 88 (305)
T ss_dssp ----CCC-HHHHHHHH---HHHHTTCCSSSCCSSCCCCCEEEECCCTTSSSEEEE--EETTEEEEEECCCCCSCCCSSSC
T ss_pred ccccccC-hhHHHHHH---HHHhcCCCCCCCCCcCccCeEEEeCcccCCCcEEEE--EECCeEEEEEEEEEeeCCCcCCC
Confidence 3343443 45688888 899999999999999999 89999999999999998 49999999999999998988889
Q ss_pred CccEEEEEEEeCCCCCcCcccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHH
Q psy9088 473 NEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSI 552 (756)
Q Consensus 473 ~eG~L~VnVe~sP~asp~fr~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAasl 552 (756)
++|+|.++|+++|+|++.|+++++++.+++++++|+++|+++++||+++|||.||+++|.|+||++||++|||++|||++
T Consensus 89 ~~g~l~~~v~~~p~a~~~~~~r~~~~~~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG~~~daai~ 168 (305)
T 2nn6_E 89 NEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISI 168 (305)
T ss_dssp SSCCEEEECCCCTTTCSSCCTTSTHHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHHHHHHH
T ss_pred CceEEEEEEEeCCCcCccccCCCCchHHHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCCCHHHHHHH
Confidence 99999999999999999887655668999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCceeecCC---ceEE-ecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE-
Q psy9088 553 AALAALAHFRHPDVTSTGD---QIII-HSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD- 627 (756)
Q Consensus 553 Aa~AAL~dtrIP~V~v~~d---~v~I-~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~- 627 (756)
|+++||.++++|.+.+.++ ...+ ...++.+..+|.++++|+++|||++++ .+|+|||.+||.++++.++|+++
T Consensus 169 aa~~AL~~a~iP~~~~~~~~~~~~~i~~~~d~~~~~~l~l~~~p~avt~g~i~~--~~l~Dpt~~Ee~~~~~~l~Va~~~ 246 (305)
T 2nn6_E 169 AVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGY--RHVVDATLQEEACSLASLLVSVTS 246 (305)
T ss_dssp HHHHTTTTCCCCEEEEECC------EEEEESSCCCSCCCCTTCCCCEEEEESSS--SEESSCCHHHHTSCSEEEEECCCS
T ss_pred HHHHHHHhcCCCeEEEecCCCCceeeeccCcccccccccccCceEEEEEEEECC--EEEECCCHHHHhhcCCcEEEEEcC
Confidence 9999999999999887542 2222 234567888899999999999999987 89999999999999999999887
Q ss_pred ------eecccccccCHHHHHHHHHHHHhhCccccCcceeeeecccchHHHhhhcc
Q psy9088 628 ------RQKLGVDSAYANLVNKTDRILLDEGEKDSGETKVKVEKVGPGIADLISKS 677 (756)
Q Consensus 628 ------~Qk~G~g~~t~e~l~kai~lAld~~~~~sk~~~~~v~~~~~~i~~~l~~~ 677 (756)
+|+.|+++++.+++.+|+++|... ..++-..+.++|.+.
T Consensus 247 ~g~i~~i~~~g~~~l~~~~l~~~l~~A~~~-----------~~~i~~~~~~~l~~~ 291 (305)
T 2nn6_E 247 KGVVTCMRKVGKGSLDPESIFEMMETGKRV-----------GKVLHASLQSVVHKE 291 (305)
T ss_dssp SSCCCEEEEEESSCBCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 556777789999999999999887 455555555666543
No 9
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=3.6e-36 Score=307.82 Aligned_cols=202 Identities=14% Similarity=0.080 Sum_probs=180.1
Q ss_pred cccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeee--cCCCCCCCCccEEEEEEEeCCCCCc
Q psy9088 413 HFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNM--VIPKATRPNEGLLFINAELSPMASP 489 (756)
Q Consensus 413 r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV--~~P~~~~P~eG~L~VnVe~sP~asp 489 (756)
.+|++++|+|||+++|+| +.+++|.+++|+|||++ +.|+|+|+|+|+++. ..|....|++|+|.++++++|+|++
T Consensus 10 ~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v--~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~p~a~~ 87 (240)
T 2wnr_B 10 LKTSPSVREDGRAFDELRPLKIEAGILERADGSSYL--EFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVE 87 (240)
T ss_dssp -----CCCTTSCCTTCCCCEEEEESCCSSSSEEEEE--EETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTSSS
T ss_pred eecccCccCCCCCcCCccCeEEEeCCCCCCCEEEEE--EECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeCCCCcC
Confidence 788999999999999999 89999999999999999 499999999999954 4445678999999999999999999
Q ss_pred CcccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhCCCCceeec
Q psy9088 490 QFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTST 569 (756)
Q Consensus 490 ~fr~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dtrIP~V~v~ 569 (756)
.++++++++.+++++++|+++|++ .|+++.| |+ |.|+||++||++|||++|||++|+++||.|+++|
T Consensus 88 ~~~~~~~~~~~~~l~~ll~r~l~~--~i~l~~~---p~---~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP----- 154 (240)
T 2wnr_B 88 ERKRPGPDRRSVEISKITAEALRP--ALILEKF---PR---SVIDVFIEVLEAEGGTRCAGITAASVALADAGIP----- 154 (240)
T ss_dssp SCCCSSCCHHHHHHHHHHHHHHGG--GBCGGGS---TT---EEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCC-----
T ss_pred CccCCCCChhHHHHHHHHHHHHHH--hcCHHHC---CC---cEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCc-----
Confidence 888888999999999999999997 5888776 43 9999999999999999999999999999999999
Q ss_pred CCceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE--------eecccccccCHHHH
Q psy9088 570 GDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD--------RQKLGVDSAYANLV 641 (756)
Q Consensus 570 ~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~--------~Qk~G~g~~t~e~l 641 (756)
++++|+++|+|++++ .+++||+.+||.++++.++|+++ .|+. |+++++++
T Consensus 155 ------------------~~~~v~avs~g~~~~--~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~--g~~~~~~l 212 (240)
T 2wnr_B 155 ------------------MRDMVVACAAGKVGD--QVVLDLSEEEDKEGQADVPVAILPRTREITLLQSD--GNLTPEEF 212 (240)
T ss_dssp ------------------BSSCCEEEEEEESSS--SEEESCCSHHHHSCSEEEEEEEETTTTEEEEEEEE--ECBCHHHH
T ss_pred ------------------cccceeeEEEEEECC--EEEeCCCHHHhccCCceEEEEEECCCCCEEEEEEE--cccCHHHH
Confidence 569999999999988 79999999999999999999984 4454 45999999
Q ss_pred HHHHHHHHhh
Q psy9088 642 NKTDRILLDE 651 (756)
Q Consensus 642 ~kai~lAld~ 651 (756)
.+|+++|...
T Consensus 213 ~~~l~~A~~~ 222 (240)
T 2wnr_B 213 ERALDLAVEG 222 (240)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999887
No 10
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=4.3e-36 Score=309.03 Aligned_cols=209 Identities=14% Similarity=0.095 Sum_probs=184.2
Q ss_pred hhcccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCCC---CCCCccEEE
Q psy9088 403 WTMRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKA---TRPNEGLLF 478 (756)
Q Consensus 403 ~p~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~---~~P~eG~L~ 478 (756)
.|+.+++ .++++++|+|||+++|+| +.+++|.+++|+|||++ +.|+|+|+|+|+++...|.. ..|++|+|.
T Consensus 3 ~~~~~~~---~i~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v--~~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~ 77 (249)
T 2nn6_B 3 DPMAGLE---LLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYI--EQGNTKALAVVYGPHEIRGSRARALPDRALVN 77 (249)
T ss_dssp -----------CCBTTBCSSSSCTTSCCCEEEEESCSSSSSEEEEE--EESSCEEEEEEEEEEECCSSSCCCCCSSCCEE
T ss_pred Chhhhhh---hcccCCcCCCCCCcCCcCCeEEEeCCCCCCCeEEEE--EECCeEEEEEEEccCCccccccccCCCcEEEE
Confidence 4677777 677899999999999999 89999999999999999 49999999999999877654 578999999
Q ss_pred EEEEeCCCCCcCcc-cCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHH
Q psy9088 479 INAELSPMASPQFE-TGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAA 557 (756)
Q Consensus 479 VnVe~sP~asp~fr-~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AA 557 (756)
++++++|+|++.++ ++++++.+++++++|+++|++ +|+++.|+ .|.|+||++||++|||++|||++|+++|
T Consensus 78 ~~~~~~p~a~~~~~~~~~~~~~~~~~~~ll~r~l~~--~i~~~~~p------~~~I~i~~~VL~~dG~~~~A~i~aa~~A 149 (249)
T 2nn6_B 78 CQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEA--AILTQLHP------RSQIDIYVQVLQADGGTYAACVNAATLA 149 (249)
T ss_dssp EEEEECTTTSSSCCCTTTSTHHHHHHHHHHHHHHHH--TTCGGGCT------TEEEEEEEEEEECCSCHHHHHHHHHHHH
T ss_pred EEEEcCCCcccccccCCCCCHhHHHHHHHHHHHHHH--hcCHHHCC------CcEEEEEEEEEeCCCCHHHHHHHHHHHH
Confidence 99999999998775 677899999999999999997 68888873 3999999999999999999999999999
Q ss_pred HhhCCCCceeecCCceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE--------ee
Q psy9088 558 LAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD--------RQ 629 (756)
Q Consensus 558 L~dtrIP~V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~--------~Q 629 (756)
|.++++| ++++|+++|+|++++ .+++||+.+||..+++.++|+++ +|
T Consensus 150 L~da~iP-----------------------l~~~v~avs~g~~~~--~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq 204 (249)
T 2nn6_B 150 VLDAGIP-----------------------MRDFVCACSAGFVDG--TALADLSHVEEAAGGPQLALALLPASGQIALLE 204 (249)
T ss_dssp HHHTCCC-----------------------CSSCCEEEEEEEETT--EEEESCCHHHHTSSCCCEEEEEETTTTEEEEEE
T ss_pred HHhcCCc-----------------------ccCCeeeEEEEEECC--eEEECCChHHhccCCcEEEEEEECCCCCEEEEE
Confidence 9999999 679999999999988 89999999999999999999985 44
Q ss_pred cccccccCHHHHHHHHHHHHhh
Q psy9088 630 KLGVDSAYANLVNKTDRILLDE 651 (756)
Q Consensus 630 k~G~g~~t~e~l~kai~lAld~ 651 (756)
+. |.++.+++.+|+++|...
T Consensus 205 ~~--g~~~~~~l~~~l~~A~~~ 224 (249)
T 2nn6_B 205 MD--ARLHEDHLERVLEAAAQA 224 (249)
T ss_dssp EC--SCCBTTSHHHHHHHHHHH
T ss_pred EE--CCcCHHHHHHHHHHHHHH
Confidence 44 578999999999999888
No 11
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=3.8e-35 Score=302.00 Aligned_cols=202 Identities=14% Similarity=0.112 Sum_probs=184.3
Q ss_pred cccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEe--eecCCCCCCCCccEEEEEEEeCCCCCc
Q psy9088 413 HFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSC--NMVIPKATRPNEGLLFINAELSPMASP 489 (756)
Q Consensus 413 r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~--EV~~P~~~~P~eG~L~VnVe~sP~asp 489 (756)
.+|++++|+|||+++|+| +.+++|.+++|+|||++ +.|+|+|+|+|++ ++..|..+.|++|+|.++++++|+|++
T Consensus 10 ~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v--~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a~~ 87 (249)
T 2po1_A 10 LIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYI--EWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVE 87 (249)
T ss_dssp CSBCSSCBTTSCCTTCCCCEEEEECCCSSSSEEEEE--EETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSS
T ss_pred EecccCccCCCCCcccccCEEEEeCCcCCCCEEEEE--EECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCcccc
Confidence 788999999999999999 89999999999999999 4999999999999 555556678999999999999999999
Q ss_pred CcccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhCCCCceeec
Q psy9088 490 QFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTST 569 (756)
Q Consensus 490 ~fr~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dtrIP~V~v~ 569 (756)
.++.+.+++.+.+++++|+++|++ +|+++.| |+ |.|+|+++||++|||++|||++|+++||.+++||
T Consensus 88 ~~~~~~~~~~~~~~s~li~r~l~~--~i~l~~~---p~---~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP----- 154 (249)
T 2po1_A 88 ERKKPGPDRRSIEISKVIKGALEP--ALILEMF---PR---TAIDVFIEVLQADAGTRVAGITAASLALADAGIP----- 154 (249)
T ss_dssp SCCCSSCCHHHHHHHHHHHHHHGG--GBCGGGS---TT---EEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCC-----
T ss_pred cccCCCCCHHHHHHHHHHHHHHHh--hccHHHC---CC---CEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCC-----
Confidence 887777899999999999999997 6887776 54 9999999999999999999999999999999999
Q ss_pred CCceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE--------eecccccccCHHHH
Q psy9088 570 GDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD--------RQKLGVDSAYANLV 641 (756)
Q Consensus 570 ~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~--------~Qk~G~g~~t~e~l 641 (756)
+.++|+++|+|++++ .+++|||.+||..+++.++|+++ +|+.| .++.+++
T Consensus 155 ------------------~~~~v~avs~g~~~~--~~l~Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~~~g--~~~~~~l 212 (249)
T 2po1_A 155 ------------------MRDLVAACAAGKIEG--EIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDG--YLTKDEF 212 (249)
T ss_dssp ------------------BSSCCEEEEEEEETT--EEEESCCHHHHHTCSEEEEEEEEGGGTEEEEECCEE--CCCHHHH
T ss_pred ------------------ccCceEEEEEEEECC--EEEecCcHHHhccCCceEEEEEECCCCCEEEEEEEc--ccCHHHH
Confidence 568999999999988 89999999999999999999983 34443 6999999
Q ss_pred HHHHHHHHhh
Q psy9088 642 NKTDRILLDE 651 (756)
Q Consensus 642 ~kai~lAld~ 651 (756)
.+|+++|...
T Consensus 213 ~~~l~~A~~~ 222 (249)
T 2po1_A 213 IEAVKLAIKG 222 (249)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999988
No 12
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=2.5e-34 Score=295.82 Aligned_cols=216 Identities=12% Similarity=0.117 Sum_probs=189.3
Q ss_pred ccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeee--cCCCCCCCCccEEEEEEEeCCCCCcC
Q psy9088 414 FWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNM--VIPKATRPNEGLLFINAELSPMASPQ 490 (756)
Q Consensus 414 ~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV--~~P~~~~P~eG~L~VnVe~sP~asp~ 490 (756)
+|++++|+|||+++|+| +.+++|.+++|+|||++ +.|+|+|+|+|+++. ..|....|++|+|.++++++|+|++.
T Consensus 15 ~l~~~~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v--~~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~~~ 92 (250)
T 2je6_B 15 ILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIF--EMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDE 92 (250)
T ss_dssp BCTTSCBTTSCCTTCCCCEEEEESCCSSSSEEEEE--EETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSS
T ss_pred ecCCCccCCCCCccCcCCeEEEeCCCCCCCeEEEE--EECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCccCC
Confidence 46799999999999999 89999999999999999 499999999999854 33455678999999999999999998
Q ss_pred cccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhCCCCceeecC
Q psy9088 491 FETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTG 570 (756)
Q Consensus 491 fr~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dtrIP~V~v~~ 570 (756)
++.|++++.+.+++++|+++|++ .|+++.+ | .|.|+|+++||++|||++|||++|+++||.+++||
T Consensus 93 ~~~g~~~~~e~~~s~li~r~l~~--~i~~~~~---p---~~~i~I~~~VL~~DG~~~~aai~aa~~AL~~a~iP------ 158 (250)
T 2je6_B 93 RKNPAPSRREIELSKVIREALES--AVLVELF---P---RTAIDVFTEILQADAGSRLVSLMAASLALADAGIP------ 158 (250)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHT--TBCGGGS---T---TEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCC------
T ss_pred ccCCCCChhHHHHHHHHHHHHHh--hcCHhhC---C---CcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCC------
Confidence 88888999999999999999997 4776655 3 49999999999999999999999999999999999
Q ss_pred CceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE--------eecccccccCHHHHH
Q psy9088 571 DQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD--------RQKLGVDSAYANLVN 642 (756)
Q Consensus 571 d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~--------~Qk~G~g~~t~e~l~ 642 (756)
+.++|.++|++++++ .+++|||.+||..+++.++|+++ +|+.| .++.+++.
T Consensus 159 -----------------~~~~v~avsvg~~~~--~~l~Dpt~~Ee~~~~~~l~va~~~~~~~i~~v~~~g--~~~~~~l~ 217 (250)
T 2je6_B 159 -----------------MRDLIAGVAVGKADG--VIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNG--SMTPDEFR 217 (250)
T ss_dssp -----------------BSSCCEEEEEEEETT--EEEESCCHHHHHHSSEEEEEEEEGGGTEEEEEEEEE--CBCHHHHH
T ss_pred -----------------ccCceEEEEEEEECC--EEEeCCCHHHHhcCCceEEEEEECCCCCEEEEEEEc--ccCHHHHH
Confidence 568999999999988 89999999999999999999984 44443 79999999
Q ss_pred HHHHHHHhhCccccCcceeeeecccchHHHhhhcc
Q psy9088 643 KTDRILLDEGEKDSGETKVKVEKVGPGIADLISKS 677 (756)
Q Consensus 643 kai~lAld~~~~~sk~~~~~v~~~~~~i~~~l~~~ 677 (756)
+|+++|... ..++-..+.++|.+.
T Consensus 218 ~~l~~A~~~-----------~~~i~~~~~~~l~~~ 241 (250)
T 2je6_B 218 QAFDLAVKG-----------INIIYNLEREALKSK 241 (250)
T ss_dssp HHHHHHHHH-----------HHHHHHHHHHHHHGG
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 999999988 455555555555443
No 13
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.3e-34 Score=297.02 Aligned_cols=225 Identities=19% Similarity=0.215 Sum_probs=187.9
Q ss_pred cccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCCCCC-CCccEEEEEEEeCCCCCcCcc--
Q psy9088 417 ESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATR-PNEGLLFINAELSPMASPQFE-- 492 (756)
Q Consensus 417 ~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~~~-P~eG~L~VnVe~sP~asp~fr-- 492 (756)
.++|+|||+++|+| +.+++|++++|+|||++ ++|+|+|+|+|++++..|...+ |++|+|.++++++|+|++.|.
T Consensus 4 ~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v--~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~a~~~~~~R 81 (262)
T 3b4t_A 4 VSKREDGRLDHELRPVIITRGFTENPAGSVLI--EFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDR 81 (262)
T ss_dssp -CCSTTSCCTTCCCCEEEEETSSSSSSEEEEE--EETTEEEEEEEEEEESCC----CCSCCEEEEEEEECGGGSSSCCCC
T ss_pred CCcCCCCCCCcCcCCeEEEeCCcCCCCeEEEE--EECCCEEEEEEEecCcCCCccCCCCceEEEEEEEeCCCcccccccc
Confidence 57899999999999 89999999999999999 4999999999999998775444 889999999999999998774
Q ss_pred ---cCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhCCCCceeec
Q psy9088 493 ---TGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTST 569 (756)
Q Consensus 493 ---~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dtrIP~V~v~ 569 (756)
+|++++.+++++++|+++|++ +||++.| ++ |+|+||++||++|||++|||++|+++||.+++.|.+ .
T Consensus 82 e~~~G~~~~~~~~isrli~r~lr~--~i~~~~l----~~--~~I~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~--~ 151 (262)
T 3b4t_A 82 ESVRGRLSGRTQEISRLIGRSLRA--CIDLAAL----GE--NTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLS--A 151 (262)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHT--TBCHHHH----CS--EEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHH--hcCHhHC----CC--eEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhc--c
Confidence 378999999999999999996 8999888 33 999999999999999999999999999999974421 1
Q ss_pred CCceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE-------eecccc-cccCHHHH
Q psy9088 570 GDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD-------RQKLGV-DSAYANLV 641 (756)
Q Consensus 570 ~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~-------~Qk~G~-g~~t~e~l 641 (756)
++. ..++ +.++++|+++|++++++ .+++|||.+||..+++.++|+++ +|+.|. ++++.+++
T Consensus 152 ~~~-------~~~~--ip~~~~v~avsvg~~~g--~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~g~~~~~~~~~l 220 (262)
T 3b4t_A 152 AGK-------LSDP--RPLSCAIAAVSVGVVDG--RIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTL 220 (262)
T ss_dssp TTC-------CSSS--CCBCSCEEEEEEEEETT--EEEESCCHHHHTTCSEEEEEEEETTSCEEEEEECSSCCCBCHHHH
T ss_pred CCc-------cccC--CcccCceeEEEEEEECC--EEEECCCHHHHhccCceEEEEEcCCCCEEEEEeeCCCCCcCHHHH
Confidence 111 0113 33579999999999987 89999999999999999999987 445553 68999999
Q ss_pred HHHHHHHHhhCccccCcceeeeecccchHHHhhh
Q psy9088 642 NKTDRILLDEGEKDSGETKVKVEKVGPGIADLIS 675 (756)
Q Consensus 642 ~kai~lAld~~~~~sk~~~~~v~~~~~~i~~~l~ 675 (756)
.+|+++|... ..++-..+.++|.
T Consensus 221 ~~~l~~A~~~-----------~~~i~~~~~~~l~ 243 (262)
T 3b4t_A 221 DKLLDMALGA-----------CDTLFAAQRDALA 243 (262)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHh
Confidence 9999999887 4454455555554
No 14
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=6.8e-34 Score=290.34 Aligned_cols=209 Identities=15% Similarity=0.152 Sum_probs=179.3
Q ss_pred cccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCCCC-CCCccEEEEEEEeCCCCCcCc-----
Q psy9088 419 KRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKAT-RPNEGLLFINAELSPMASPQF----- 491 (756)
Q Consensus 419 iRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~~-~P~eG~L~VnVe~sP~asp~f----- 491 (756)
.|+|||+++|+| +.+++|.+++|+|||++ +.|+|+|+|+|++++..|... .|++|+|.++++++|++++.+
T Consensus 2 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v--~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~~~~~r~~Re~ 79 (239)
T 1r6l_A 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLV--EFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRSTGERNQREA 79 (239)
T ss_dssp CCTTCCCTTCCCCEEEESSCSSSSSEEEEE--EETTEEEEEEEEEEESCSSCCC---CCEEEEEEEECTTSSSSCCCCHH
T ss_pred cCCCCCCCCCcCCeEEEeCCcCCCCeEEEE--EECCEEEEEEEEccCccCCccCCCCcEEEEEEEEeCCCcccccccccc
Confidence 399999999999 89999999999999999 499999999999999887543 378999999999999999876
Q ss_pred ccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhCCCCceeecCC
Q psy9088 492 ETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGD 571 (756)
Q Consensus 492 r~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dtrIP~V~v~~d 571 (756)
.+|++++.+++++++|+++|++ +||++.| ++ |+|+||++||++|||++|||++|+++||.+++.|.+. +
T Consensus 80 ~~G~~~~~~~~isrli~r~l~~--~i~~~~l----~~--~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~--~- 148 (239)
T 1r6l_A 80 SRGKQGGRTLEIQRLIGRSLRA--ALDLSKL----GE--NTLYIDCDVIQADGGTRTASITGATVALIDALAVLKK--R- 148 (239)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHH--TBCGGGT----CS--EEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHH--T-
T ss_pred CCCCCcHHHHHHHHHHHHHHHH--hcCHHHc----CC--eEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhcchhcc--c-
Confidence 2478999999999999999996 8999988 33 8999999999999999999999999999999954221 1
Q ss_pred ceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE-------eeccc-ccccCHHHHHH
Q psy9088 572 QIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD-------RQKLG-VDSAYANLVNK 643 (756)
Q Consensus 572 ~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~-------~Qk~G-~g~~t~e~l~k 643 (756)
++..+ +.++++|+++|++++++ .+++|||.+||..+++.++|+++ +|+.| .++++.+++.+
T Consensus 149 -------~~~~~--ip~~~~~~avs~g~~~~--~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~~~~~g~~~~~~~~~l~~ 217 (239)
T 1r6l_A 149 -------GALKG--NPLKQMVAAVSVGIYQG--VPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNA 217 (239)
T ss_dssp -------TCCSS--CCBCCCEEEEEEEEETT--EEEESCCHHHHHHCSEEEEEEEETTSCEEEEEEEESSSCCCHHHHHH
T ss_pred -------Ccccc--cCccCceeEEEEEEECC--EEEECCCHHHHhcCCceEEEEEeCCCCEEEEEEeCCCCCcCHHHHHH
Confidence 11122 33679999999999987 79999999999999999999987 44544 57899999999
Q ss_pred HHHHHHhh
Q psy9088 644 TDRILLDE 651 (756)
Q Consensus 644 ai~lAld~ 651 (756)
|+++|...
T Consensus 218 ~l~~a~~~ 225 (239)
T 1r6l_A 218 MLELAQQG 225 (239)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998877
No 15
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=3.9e-34 Score=295.61 Aligned_cols=223 Identities=15% Similarity=0.142 Sum_probs=189.5
Q ss_pred cccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCCC-CCCCccEEEEEEEeCCCCCcCc-----
Q psy9088 419 KRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKA-TRPNEGLLFINAELSPMASPQF----- 491 (756)
Q Consensus 419 iRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~-~~P~eG~L~VnVe~sP~asp~f----- 491 (756)
+|+|||+++|+| +.+++|.+++|+|||++ ++|+|+|||+|+++...|.. ..|++|+|.++++++|++++.+
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v--~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~P~a~~~r~~Re~ 78 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLI--SFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRES 78 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEE--EETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECSCCTTSCCCCSS
T ss_pred CCCCCCCCCCccCeEEEECCCCCCCEEEEE--EECCEEEEEEEEcCCcCCCCCCCCCceEEEEEEEcCCCcccccccccc
Confidence 499999999999 89999999999999999 49999999999999887743 3489999999999999999876
Q ss_pred ccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhCCCCceeecCC
Q psy9088 492 ETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGD 571 (756)
Q Consensus 492 r~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dtrIP~V~v~~d 571 (756)
.+|++++.+++++++|+++|++ +||++.| ++ |.|+||++||++|||++|||++|+++||.|++.|.+.
T Consensus 79 ~~G~~~~~~~eisrli~r~lr~--~i~~~~l----~~--~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~---- 146 (255)
T 1udn_A 79 VQGRIGGRTHEIQRMIGRAMRT--AVELTKI----GE--RTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHK---- 146 (255)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHH--HBCGGGG----CS--CEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred CCCCCCHHHHHHHHHHHHHHHH--hcCHHHc----CC--eEEEEEEEEEeCCCCHHHHHHHHHHHHHHhhcchhcc----
Confidence 2478999999999999999997 8999998 44 9999999999999999999999999999999965321
Q ss_pred ceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE-------eeccc-ccccCHHHHHH
Q psy9088 572 QIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD-------RQKLG-VDSAYANLVNK 643 (756)
Q Consensus 572 ~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~-------~Qk~G-~g~~t~e~l~k 643 (756)
.++..++ .++++|+++|++++++ .+++|||.+||..+++.++|+++ +|+.| .++++.+++.+
T Consensus 147 ------~~~~~~i--pl~~~v~avsvg~~~g--~~llDpt~~Ee~~~~~~l~va~~~~g~i~~~q~~g~~~~~~~~~l~~ 216 (255)
T 1udn_A 147 ------EGIIEET--PIKDFVAAVSVGIVND--RILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIK 216 (255)
T ss_dssp ------TTSSSSC--CBCCCEEEEEEEEETT--EEEESCCHHHHHTCSEEEEEEEETTSCEEEEEEEESSCCCCHHHHHH
T ss_pred ------cCcccCC--CccCceeEEEEEEECC--EEEECCCHHHHhhCCCCEEEEEeCCCCEEEEEEeCCCCCcCHHHHHH
Confidence 1222333 3579999999999987 79999999999999999999987 55544 57899999999
Q ss_pred HHHHHHhhCccccCcceeeeecccchHHHhhhc
Q psy9088 644 TDRILLDEGEKDSGETKVKVEKVGPGIADLISK 676 (756)
Q Consensus 644 ai~lAld~~~~~sk~~~~~v~~~~~~i~~~l~~ 676 (756)
|+++|... ..++-..+.++|.+
T Consensus 217 ~l~~A~~~-----------~~~i~~~~~~~l~~ 238 (255)
T 1udn_A 217 MLDLAQKG-----------INELIELQKKLYVI 238 (255)
T ss_dssp HHHHHHHH-----------HHHHHHHHHTTEEE
T ss_pred HHHHHHHH-----------HHHHHHHHHHHHHh
Confidence 99999888 45555555555544
No 16
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=6.5e-34 Score=295.35 Aligned_cols=204 Identities=13% Similarity=0.088 Sum_probs=183.7
Q ss_pred cccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeec--CCCCCCCCccEEEEEEEeCCCCCc
Q psy9088 413 HFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMV--IPKATRPNEGLLFINAELSPMASP 489 (756)
Q Consensus 413 r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~--~P~~~~P~eG~L~VnVe~sP~asp 489 (756)
++|.+++|+|||+++|+| +.+++|.+++|+|||++. .|+|+|+|+|+++.. .+....|++|+|.++++++|++++
T Consensus 10 ~~i~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~--~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~ 87 (258)
T 3m7n_D 10 KLIVDGLRLDGRKFDELRPIKIEASVLKRADGSCYLE--MGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVE 87 (258)
T ss_dssp CSEETTEETTSCCTTCCCCEEEEECCCSSSSEEEEEE--ETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSS
T ss_pred HHHhcCCCCCCCCcCCccCeEEEECCCCCCCceEEEE--ECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCcccc
Confidence 788899999999999999 899999999999999994 999999999997443 344567999999999999999999
Q ss_pred CcccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhCCCCceeec
Q psy9088 490 QFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTST 569 (756)
Q Consensus 490 ~fr~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dtrIP~V~v~ 569 (756)
.++++++++.+.+++++|+++|++ +|+++.| | +|.|+|+++||++|||+++|+++|+++||.+++||
T Consensus 88 ~r~~~~~~~re~ei~~li~r~l~~--~i~~~~~---p---~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP----- 154 (258)
T 3m7n_D 88 ERKRPGPDRRSIEISKVSKEAFEA--VIMKELF---P---RSAIDIFVEVLQADAGSRTACLNAASVALVDAGVP----- 154 (258)
T ss_dssp SCCCSSCCHHHHHHHHHHHHHHHT--TBCGGGS---T---TEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCC-----
T ss_pred cccCCCCCHHHHHHHHHHHHHHHh--hcCHHhC---C---ceEEEEEEEEEEcCCCHHHHHHHHHHHHHHhcCCC-----
Confidence 888888999999999999999997 6888776 3 59999999999999999999999999999999999
Q ss_pred CCceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEE-Ee----e----cccccccCHHH
Q psy9088 570 GDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQ-DR----Q----KLGVDSAYANL 640 (756)
Q Consensus 570 ~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav-~~----Q----k~G~g~~t~e~ 640 (756)
++++|.++|+|++++ .+++||+.+|+..+++.++|++ +. . ..+.|+++.++
T Consensus 155 ------------------~~~~v~avsvg~i~~--~~llDpt~~Ee~~~~~d~~va~~~~~~~~~~I~~lq~~g~~~~~~ 214 (258)
T 3m7n_D 155 ------------------MKGMITSVAVGKADG--QLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDE 214 (258)
T ss_dssp ------------------BSSEEEEEEEEEETT--EEEESCCHHHHHHSSEEEEEEEEEETTEEEEEEEEEEEEEECHHH
T ss_pred ------------------CCCceEEEEEEEECC--EEEECCCHHHHhccCceEEEEEEcCCCCCCCEEEEEecCCcCHHH
Confidence 569999999999988 7999999999999999999998 31 1 11234899999
Q ss_pred HHHHHHHHHhh
Q psy9088 641 VNKTDRILLDE 651 (756)
Q Consensus 641 l~kai~lAld~ 651 (756)
+.+|+++|...
T Consensus 215 l~~~l~~A~~~ 225 (258)
T 3m7n_D 215 VKQAIELAKKG 225 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999988
No 17
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-34 Score=291.98 Aligned_cols=200 Identities=12% Similarity=0.111 Sum_probs=169.0
Q ss_pred ccccccccCCCCCccce-eEEeecccccc-ccceEeecccCCcEEEEEEEeeec--CCCCCCCCccEEEEEEEeCCCCCc
Q psy9088 414 FWKESKRAQDWTDVDFM-SSENWTSISAE-NGEAVWCPWVKPSEVLAQVSCNMV--IPKATRPNEGLLFINAELSPMASP 489 (756)
Q Consensus 414 ~L~~giRpDGR~~~efR-~~I~tGvIssA-nGSA~vsa~Vg~GkVIcgVK~EV~--~P~~~~P~eG~L~VnVe~sP~asp 489 (756)
++++++|+|||+++|+| +.+++|.++++ +|||++ +.|+|+|+|+|+++.. .|..+.|++|+|.++++++|+|++
T Consensus 7 ~~~~~~R~DGR~~~e~R~i~i~~g~l~~aa~GSa~v--~~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~ 84 (246)
T 2wp8_B 7 YSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYM--EQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSKF 84 (246)
T ss_dssp SCTTSCCTTSCCTTCCCCEEEEECSCTTTCSEEEEE--EETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC-----
T ss_pred hcccCccCCCCCcCCccCeEEEeCCCCCCCCceEEE--EECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCcccc
Confidence 55789999999999999 89999999999 999999 4999999999999887 334567899999999999999998
Q ss_pred Cccc--CCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhCCCCcee
Q psy9088 490 QFET--GRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVT 567 (756)
Q Consensus 490 ~fr~--Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dtrIP~V~ 567 (756)
.|.+ |++++.+.+++++|++.|++ .|+++.| | +|.|+||++||++|||++|||++|+++||.+++||
T Consensus 85 ~~~~r~g~~~~~~~~~s~li~r~l~~--~i~~~~~---p---~~~I~i~~~VL~~dG~~~~aai~aa~~AL~~a~iP--- 153 (246)
T 2wp8_B 85 ERSKSSHKNERRVLEIQTSLVRMFEK--NVMLNIY---P---RTVIDIEIHVLEQDGGIMGSLINGITLALIDAGIS--- 153 (246)
T ss_dssp ---------CHHHHHHHHHHHHHHHH--HBCTTTS---C---SEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCC---
T ss_pred cccccCCCCChhHHHHHHHHHHHHHH--hhhHHHC---C---CeEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCc---
Confidence 7765 66789999999999999987 5777766 2 69999999999999999999999999999999999
Q ss_pred ecCCceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE--------eecccccccCHH
Q psy9088 568 STGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD--------RQKLGVDSAYAN 639 (756)
Q Consensus 568 v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~--------~Qk~G~g~~t~e 639 (756)
++++|.++|+|++++ .+++|||.+|| .+++.++|+++ +|+ .+.++.+
T Consensus 154 --------------------~~~~v~avs~g~~~~--~~l~Dp~~~Ee-~~~~~l~v~~~~~~~~i~~i~~--~g~~~~~ 208 (246)
T 2wp8_B 154 --------------------MFDYISGISVGLYDT--TPLLDTNSLEE-NAMSTVTLGVVGKSEKLSLLLV--EDKIPLD 208 (246)
T ss_dssp --------------------BSSCEEEEEEEEETT--EEESSCCHHHH-HHSEEEEEEEETTSSCEEEEEE--CSCEEHH
T ss_pred --------------------ccCceeEEEEEEECC--EEEECCCchhh-ccCceEEEEEeCCCCCEEEEEe--cCCcCHH
Confidence 579999999999988 89999999999 99999999885 344 4579999
Q ss_pred HHHHHHHHHHhh
Q psy9088 640 LVNKTDRILLDE 651 (756)
Q Consensus 640 ~l~kai~lAld~ 651 (756)
++.+|+++|...
T Consensus 209 ~l~~~l~~A~~~ 220 (246)
T 2wp8_B 209 RLENVLAIGIAG 220 (246)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999888
No 18
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=6.5e-34 Score=291.97 Aligned_cols=209 Identities=17% Similarity=0.192 Sum_probs=165.7
Q ss_pred cccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCC-CCCCCccEEEEEEEeCCCCCcCc-----
Q psy9088 419 KRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPK-ATRPNEGLLFINAELSPMASPQF----- 491 (756)
Q Consensus 419 iRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~-~~~P~eG~L~VnVe~sP~asp~f----- 491 (756)
.|+|||+++|+| +.+++|.+++|+|||++ ++|+|+|+|+|+++...|. ...+++|+|.++++++|+|++.+
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v--~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~p~a~~~~~~Re~ 78 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLI--TAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQATNQQTIQES 78 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEE--EETTEEEEEEEEEESCCCGGGTTSCCCEEEEEEEC-------------
T ss_pred CCCCCCCCCCcCCeEEEeCCCCCCCEEEEE--EECCeEEEEEEEeccccCCccCCCCceEEEEEEEeCCCcCcccccccc
Confidence 499999999999 89999999999999999 4999999999999998874 35689999999999999999865
Q ss_pred ccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhCCCCceeecCC
Q psy9088 492 ETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGD 571 (756)
Q Consensus 492 r~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dtrIP~V~v~~d 571 (756)
.+|++++.+++|+++|+++|++ +||+++| ++ |.|+||++||++|||++|||++|+++||.+++.|.+.
T Consensus 79 ~~G~~~~~~~eis~li~r~l~~--~i~~~~l----~~--~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~---- 146 (245)
T 1oys_A 79 SKGKISGRTMEIQRLIGRALRA--VVDLEKL----GE--RTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIK---- 146 (245)
T ss_dssp ------CHHHHHHHHHHHHHHH--TBCHHHH----CS--CEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred cCCCCchHHHHHHHHHHHHHHH--hcCHhHC----CC--EEEEEEEEEEeCCCCHHHHHHHHHHHHHHhccchhcc----
Confidence 3467899999999999999997 8999988 34 5788999999999999999999999999999977431
Q ss_pred ceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEE-EeCChhHhhhcCCceEEEEE-------eeccc-ccccCHHHHH
Q psy9088 572 QIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGS-TVPGFTECIQLDTALALSQD-------RQKLG-VDSAYANLVN 642 (756)
Q Consensus 572 ~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iL-vDPT~eEE~~sda~LtVav~-------~Qk~G-~g~~t~e~l~ 642 (756)
..+.. ++.|+++|+++|+|++++ .++ +|||.+||..+++.++|+++ +|+.| +++++++++.
T Consensus 147 ------~~~~~--~ipl~~~v~avs~g~~~g--~~vl~Dp~~~Ee~~~~~~~~v~~~~~g~i~~iq~~g~~~~~~~~~l~ 216 (245)
T 1oys_A 147 ------AGTIK--TNPITDFLAAISVGIDKE--QGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLN 216 (245)
T ss_dssp ------TTSSS--SCCBCSCEEEEEEEEETT--TEEEESCCHHHHHHEEEEEEEEEETTSCEEEEEEEESSCCCCHHHHH
T ss_pred ------cCccc--ccCCCCceeEEEEEEECC--EEEEecCCHHHHhcCCCcEEEEEcCCCcEEEEEEeCCCCCcCHHHHH
Confidence 11223 445679999999999987 455 99999999999999999987 45554 4789999999
Q ss_pred HHHHHHHhh
Q psy9088 643 KTDRILLDE 651 (756)
Q Consensus 643 kai~lAld~ 651 (756)
+|+++|...
T Consensus 217 ~~l~~A~~~ 225 (245)
T 1oys_A 217 GLLGLAEKG 225 (245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999887
No 19
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=2e-33 Score=291.15 Aligned_cols=215 Identities=17% Similarity=0.219 Sum_probs=184.7
Q ss_pred cccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCC-CCCCCCccEEEEEEEeCCCCCcC
Q psy9088 413 HFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIP-KATRPNEGLLFINAELSPMASPQ 490 (756)
Q Consensus 413 r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P-~~~~P~eG~L~VnVe~sP~asp~ 490 (756)
||-....|-|||+++++| +.+++|.+++|+|||++ +.|+|+|+|+|+++...| ....|++|+|.++++++|++++.
T Consensus 5 ~~~~~~~~~~~R~~~e~R~i~i~~g~~~~A~GSa~v--~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~P~a~~~ 82 (255)
T 3dd6_A 5 HHHHHHMRVDGREKTELRHIHIHTNYLKHPEGSVLI--EVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRATEQ 82 (255)
T ss_dssp ------CCCCSCCTTCCCCEEEEESCSSSSSEEEEE--EETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECTTSSSS
T ss_pred cccccccccCCCCcCCCCCEEEEECCCCCCCeEEEE--EECCeEEEEEEEecCCCCCCCCCCCceEEEEEEEECCCcccc
Confidence 344456899999999999 89999999999999999 499999999999998765 55678999999999999999988
Q ss_pred cc-----cCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhCCCCc
Q psy9088 491 FE-----TGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPD 565 (756)
Q Consensus 491 fr-----~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dtrIP~ 565 (756)
++ +|++++.+.+++++|++.|++ +||++.| ++ |.|+||++||++|||+++|+++|+++||.++++|.
T Consensus 83 ~~~Re~~~g~~~~~~~eisrli~r~lr~--~i~~~~l----~~--~~I~V~~~VL~~DG~~~~aai~aa~~AL~~a~~p~ 154 (255)
T 3dd6_A 83 RTIRESSKGKVTGRTMEIQRLIGRALRA--VVDLEAL----GE--RTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKL 154 (255)
T ss_dssp CCCCCCC-CCCCHHHHHHHHHHHHHHHH--HBCHHHH----CS--CEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHH--hcChhhc----CC--eEEEEEEEEEECCCCHHHHHHHHHHHHHHHhhhhh
Confidence 74 278999999999999999998 8999888 34 99999999999999999999999999999999995
Q ss_pred eeecCCceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEE-EeCChhHhhhcCCceEEEEE-------eeccc-cccc
Q psy9088 566 VTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGS-TVPGFTECIQLDTALALSQD-------RQKLG-VDSA 636 (756)
Q Consensus 566 V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iL-vDPT~eEE~~sda~LtVav~-------~Qk~G-~g~~ 636 (756)
+. + .+..++| ++++|.++|+|++++ .++ +|||.+||..++..++|+++ +|+.| .+++
T Consensus 155 ~~--~--------g~~~~iP--l~~~v~avsvg~i~g--~~vllDpt~~Ee~~~~~~l~Va~~~~g~i~~vq~~g~~~~~ 220 (255)
T 3dd6_A 155 LQ--A--------EKVSKIP--VKDYLAATSVGIVEE--QGVVLDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATF 220 (255)
T ss_dssp HH--T--------TSSSSCC--BSSCEEEEEEEEETT--TEEEESCCHHHHHTEEEEEEEEEETTSCEEEEEEEESSSCC
T ss_pred hh--c--------CcccCCC--ccCceeEEEEEEECC--EEEEeCCCHHHHhhcCceEEEEEcCCCcEEEEEecCCCCCc
Confidence 42 1 1223444 569999999999987 566 99999999999999999887 55655 6789
Q ss_pred CHHHHHHHHHHHHhh
Q psy9088 637 YANLVNKTDRILLDE 651 (756)
Q Consensus 637 t~e~l~kai~lAld~ 651 (756)
+.+++.+|+++|...
T Consensus 221 ~~~~l~~~l~~A~~~ 235 (255)
T 3dd6_A 221 SRAQLNELLDAAEQG 235 (255)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999887
No 20
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.8e-32 Score=278.78 Aligned_cols=195 Identities=16% Similarity=0.104 Sum_probs=154.6
Q ss_pred cccccccccCCCCCc----cce-eEEeeccccccccceEeecccCCcEEEEEEEeeec-CCCCCCCCccEEEEEEEeCCC
Q psy9088 413 HFWKESKRAQDWTDV----DFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMV-IPKATRPNEGLLFINAELSPM 486 (756)
Q Consensus 413 r~L~~giRpDGR~~~----efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~-~P~~~~P~eG~L~VnVe~sP~ 486 (756)
+.+.+++|+|||+++ |+| +.+++|.+++|+|||++ +.|+|+|||+|++++. .|..+.|++|+|.++ ++|+
T Consensus 10 ~~~~~~~R~DGR~~~~~~~e~R~i~i~~g~l~~a~GSa~v--~~G~T~Vl~~V~g~~~~~~~~~~~~~g~l~~~--~~p~ 85 (237)
T 2nn6_D 10 DAKIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASF--LQGDTSVLAGVYGPAEVKVSKEIFNKATLEVI--LRPK 85 (237)
T ss_dssp -----------------CCCCCCEEEEESCCSSSSEEEEE--EETTEEEEEEEEEEEECC------CCEEEEEE--EECS
T ss_pred CCCccCccCCCCCCCCccccccceEEEeCCCCCCCEEEEE--EECCcEEEEEEeCCCcccccccCCCcEEEEEE--ecCC
Confidence 456689999999999 999 89999999999999999 4999999999999988 455677889977765 4564
Q ss_pred CCcCcccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhCCCCce
Q psy9088 487 ASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDV 566 (756)
Q Consensus 487 asp~fr~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dtrIP~V 566 (756)
.|++++++.+++++|+++|+ .+|+.+++.+|.|+||++||++|||++|||++|+++||.++++|
T Consensus 86 ------~g~~~~~e~~~~~li~r~l~--------~~i~~~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~AL~da~iP-- 149 (237)
T 2nn6_D 86 ------IGLPGVAEKSRERLIRNTCE--------AVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP-- 149 (237)
T ss_dssp ------SSCCCHHHHHHHHHHHHHHH--------HHCGGGCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCC--
T ss_pred ------CCCCCccHHHHHHHHHHHHH--------HHhchhcCCceEEEEEEEEEECCCcHHHHHHHHHHHHHHHcCCC--
Confidence 36778899999999999975 45666777899999999999999999999999999999999999
Q ss_pred eecCCceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE--------eecccccccCH
Q psy9088 567 TSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD--------RQKLGVDSAYA 638 (756)
Q Consensus 567 ~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~--------~Qk~G~g~~t~ 638 (756)
++++|.++|+|++.++ .+++||+.+||+.+++.++|+++ +|+ .|+++.
T Consensus 150 ---------------------~~~~v~avs~g~~~~~-~~llDp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~--~g~~~~ 205 (237)
T 2nn6_D 150 ---------------------MRALFCGVACALDSDG-TLVLDPTSKQEKEARAVLTFALDSVERKLLMSST--KGLYSD 205 (237)
T ss_dssp ---------------------CSSCEEEEEEEECTTC-CEEESCCHHHHHHCSEEEEEEEETTTCCCCEEEE--EESCCH
T ss_pred ---------------------cccCeeeEEEEEecCC-cEEeCCCHHHHhccCCceEEEEcCCCCCEEEEEE--eCCcCH
Confidence 5799999999999432 79999999999999999999997 344 358999
Q ss_pred HHHHHHHHHHHhh
Q psy9088 639 NLVNKTDRILLDE 651 (756)
Q Consensus 639 e~l~kai~lAld~ 651 (756)
+++.+|+++|...
T Consensus 206 ~~l~~~l~~A~~~ 218 (237)
T 2nn6_D 206 TELQQCLAAAQAA 218 (237)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999887
No 21
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=99.98 E-value=8.8e-32 Score=277.59 Aligned_cols=193 Identities=23% Similarity=0.220 Sum_probs=164.2
Q ss_pred cccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeee-cCCCCCCCCccEEEEEEEeCCCCCcCcccC
Q psy9088 417 ESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNM-VIPKATRPNEGLLFINAELSPMASPQFETG 494 (756)
Q Consensus 417 ~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV-~~P~~~~P~eG~L~VnVe~sP~asp~fr~G 494 (756)
+++|+|||+++|+| +.+++|.+++|+|||++. .|+|+|+|+|+++. ..|..+.|+++.+.+ +++|. .|
T Consensus 2 eg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~--~G~T~Vl~~V~g~~~~~~~~~~~~~~~~~~--~~~P~------~g 71 (246)
T 3hkm_A 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWA--QGDTIVLAAVYGPKPGTRKGENPEKASIEV--VWKPM------TG 71 (246)
T ss_dssp ---CTTSCCTTCCCCEEEEECCCSSSSEEEEEE--ETTEEEEEEECCCEECCCTTSCSSSCEEEE--EEECS------SS
T ss_pred CCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEE--ECCeEEEEEEecCcCCCcccCCCccEEEEE--EeCCC------CC
Confidence 68999999999999 899999999999999994 99999999999876 356667788887655 56772 36
Q ss_pred CCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhCCCCceeecCCceE
Q psy9088 495 RQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQII 574 (756)
Q Consensus 495 r~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dtrIP~V~v~~d~v~ 574 (756)
++++.+.+++++|++.|+ .||+.+++.+|.|+||++||++|||+++|+++|+++||.++++|
T Consensus 72 ~~~~~~~e~~~li~r~l~--------~l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP---------- 133 (246)
T 3hkm_A 72 QIGKQEKEYEMTLKRTLQ--------SICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIP---------- 133 (246)
T ss_dssp CCCTTHHHHHHHHHHHHH--------HHBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCChhHHHHHHHHHHHHH--------HhcCccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCC----------
Confidence 677788999999999975 46777777899999999999999999999999999999999999
Q ss_pred EecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE------eeccc----------------
Q psy9088 575 IHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD------RQKLG---------------- 632 (756)
Q Consensus 575 I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~------~Qk~G---------------- 632 (756)
++++|.++|++++.++ .+++|||.+||+.+++.++|+++ +|+.|
T Consensus 134 -------------~~~~v~avs~g~~~~g-~~llDpt~~Ee~~~~~~~~va~~~~~i~~lq~~g~~~~~~~~~~~i~~~~ 199 (246)
T 3hkm_A 134 -------------LKHLAVAIGCGVLEDG-EVILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKEEDSERGLITSIT 199 (246)
T ss_dssp -------------BSSCEEEEEEEECTTS-CEEESCCHHHHTTCSEEEEEEEEC--------------------CCCEEE
T ss_pred -------------CCCceEEEEEEEEECC-EEEECCCHHHHhcCCeeEEEEEeCCceEEEeecccccccccccceeeeec
Confidence 6799999999999443 79999999999999999999987 45554
Q ss_pred ccccCHHHHHHHHHHHHhh
Q psy9088 633 VDSAYANLVNKTDRILLDE 651 (756)
Q Consensus 633 ~g~~t~e~l~kai~lAld~ 651 (756)
.++++.+++.+|+++|...
T Consensus 200 ~g~~~~~~l~~~l~~A~~~ 218 (246)
T 3hkm_A 200 HGVMSEEDYFSCIERGLAA 218 (246)
T ss_dssp EECEEHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHH
Confidence 6789999999999999887
No 22
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.97 E-value=4.9e-32 Score=282.13 Aligned_cols=199 Identities=15% Similarity=0.059 Sum_probs=170.4
Q ss_pred ccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCCC-C------------CCCccEEEEEE
Q psy9088 416 KESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKA-T------------RPNEGLLFINA 481 (756)
Q Consensus 416 ~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~-~------------~P~eG~L~VnV 481 (756)
.+++|+|||+++|+| +.+++|.+++|||||++ +.|+|+|||+|+++...|.. + .+++|.|.+++
T Consensus 23 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v--~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~~ 100 (272)
T 2nn6_F 23 DEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYL--EAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDF 100 (272)
T ss_dssp ------CCCCSSCCCCCCCCCSCCSSSSEEECC--CSSSCEEEEEEEEEECC-------------------CBCEEEEEE
T ss_pred ccCccCCCCCccccCCeEEEeCCCCCCCeEEEE--EeCCeEEEEEEECCCcccccccccccccccccccCCCceEEEEEE
Confidence 578999999999999 79999999999999998 49999999999999876643 2 46789999999
Q ss_pred EeCCCCCcCcccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhC
Q psy9088 482 ELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHF 561 (756)
Q Consensus 482 e~sP~asp~fr~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dt 561 (756)
+++|++++.++++++++.+.+++++|+++|++ .|+++.+ | .|.|+|+++||++|||+++||++|+++||.++
T Consensus 101 ~~~p~a~~~~~~~~~~~~e~~~s~li~r~l~~--~i~~~~~---p---~~~I~I~~~VL~~DG~~~~aai~aa~~AL~da 172 (272)
T 2nn6_F 101 RRAPFAGRRRRAPPGGCEERELALALQEALEP--AVRLGRY---P---RAQLEVSALLLEDGGSALAAALTAAALALADA 172 (272)
T ss_dssp EECTTSSSSCCCSCCHHHHHHHHHHHHHHHTT--TBCSTTS---B---TCEEEEEEEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred EecCCCcCCccCCCCCHHHHHHHHHHHHHHHH--hccHHHC---C---ceEEEEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 99999999988889999999999999999987 4666554 3 39999999999999999999999999999999
Q ss_pred CCCceeecCCceEEecCCCCCCCCcccCCceEEEEEEE---eCCceeEEEeCChhHhhhcCCceEEEEE--------eec
Q psy9088 562 RHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAV---FNGGSEGSTVPGFTECIQLDTALALSQD--------RQK 630 (756)
Q Consensus 562 rIP~V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgl---i~d~~~iLvDPT~eEE~~sda~LtVav~--------~Qk 630 (756)
+|| +.+++.++|+++ +++ .+|+|||.+||..++..++|+++ +|+
T Consensus 173 ~iP-----------------------~~~~v~avsvg~~~~~~~--~~llDpt~~Ee~~~~~~l~va~~~~~~~I~~i~~ 227 (272)
T 2nn6_F 173 GVE-----------------------MYDLVVGCGLSLAPGPAP--TWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLG 227 (272)
T ss_dssp CCC-----------------------BSSCCEEEECCCCSCSSC--CCCSSCCTTTGGGCSSEEEEEEETTTTEEEEEEE
T ss_pred CCc-----------------------ccCcEEEEEEEEeeccCC--eEEeCCCHHHhccCCceEEEEEeCCCCCEEEEEE
Confidence 999 568999999999 666 79999999999999999999975 444
Q ss_pred ccccccCH-HHHHHHHHHHHhh
Q psy9088 631 LGVDSAYA-NLVNKTDRILLDE 651 (756)
Q Consensus 631 ~G~g~~t~-e~l~kai~lAld~ 651 (756)
.| .++. +++.+|+++|...
T Consensus 228 ~g--~~~~~~~l~~~l~~A~~~ 247 (272)
T 2nn6_F 228 SG--EGGLTESWAEAVRLGLEG 247 (272)
T ss_dssp EC--CSSCTTTTHHHHHHHHHH
T ss_pred ec--CCCHHHHHHHHHHHHHHH
Confidence 43 6888 9999999999888
No 23
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.95 E-value=2.9e-28 Score=283.27 Aligned_cols=221 Identities=10% Similarity=-0.000 Sum_probs=179.4
Q ss_pred cccCcchhcccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecC--CCC---C
Q psy9088 397 GAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVI--PKA---T 470 (756)
Q Consensus 397 ~~~~rL~p~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~--P~~---~ 470 (756)
++|+.+.+..+.+ ..+.+++|+|||+++++| +.+++|++++|+|||++. .|+|+|||+|+.+... |.. .
T Consensus 301 ~~~~~~~k~~vr~---~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~--~G~TqVL~~Vt~gp~e~~~~~d~l~ 375 (723)
T 3cdi_A 301 EILHAIEKNVVRS---RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFT--RGETQALVTATLGTARDAQVLDELM 375 (723)
T ss_dssp HHHHHHHHHHHHH---HHHTTCCCTTSCCTTCCCCEEEEESCSTTSSEEEEEE--ETTEEEEEEEEECC-----------
T ss_pred HHHHHHHHHHHHH---HHhccCcCCCCCCccccccceEEeCCCCCCCeEEEEE--ECCcEEEEEEEecCcccccCCcccC
Confidence 4566676665555 566699999999999999 899999999999999994 9999999999865543 222 2
Q ss_pred CCCccEEEEEEEeCCCCCcCc-ccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhH
Q psy9088 471 RPNEGLLFINAELSPMASPQF-ETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGC 549 (756)
Q Consensus 471 ~P~eG~L~VnVe~sP~asp~f-r~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDA 549 (756)
.+++|++.++++++|+|++.+ +.|.++.++..++++++++|++ +|++++ ++.|+|+||+.||++|||+++|
T Consensus 376 ~~~~g~~~~~y~~~P~st~e~~r~g~p~~REi~~~~li~raL~~--vI~~~~------~~p~tI~Vd~~VLesdGs~~~A 447 (723)
T 3cdi_A 376 GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA--VMPDMD------KFPYTVRVVSEITESNGSSSMA 447 (723)
T ss_dssp --CTTSEEEEEECCGGGGTCCCCC-----CTTHHHHHHHHHHHT--TSCCSS------SSCSCEEEEEEEEECSSCHHHH
T ss_pred CCCceEEEEEEecCCCCccccccCCCCCHHHHHHHHHHHHHHHH--hcCccc------CCCEEEEEEEEEEeCCCCHHHH
Confidence 367899999999999998866 3456778888899999999986 577644 3568999999999999999999
Q ss_pred HHHHHHHHHhhCCCCceeecCCceEEecCCCCCCCCcccCCceEEEEEEEeCCce--eEEEeCChhHhhhcCCceEEEEE
Q psy9088 550 CSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGS--EGSTVPGFTECIQLDTALALSQD 627 (756)
Q Consensus 550 aslAa~AAL~dtrIP~V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~--~iLvDPT~eEE~~sda~LtVav~ 627 (756)
+++|+++||+|+++| +.+++.++|+|+++++. .+|+||+.+|+..++..++|+.+
T Consensus 448 si~aa~lAL~dAgVP-----------------------l~~~vaavs~gli~~g~~~~iL~Dp~~~Ed~~~d~d~~Va~t 504 (723)
T 3cdi_A 448 SVCGASLALMDAGVP-----------------------IKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGS 504 (723)
T ss_dssp HHHHHHHHHHHTTCC-----------------------CSSCCEEEEEEEEEETTEEEEESSCCGGGGGGCSEEEEEEEC
T ss_pred HHHHHHHHHhcCCCC-----------------------cccceeeEEEEEEcCCCceEEEECCChHHhhhccceeeeccc
Confidence 999999999999999 45789999999997432 48999999999999999999876
Q ss_pred ------eeccc-ccccCHHHHHHHHHHHHhhCc
Q psy9088 628 ------RQKLG-VDSAYANLVNKTDRILLDEGE 653 (756)
Q Consensus 628 ------~Qk~G-~g~~t~e~l~kai~lAld~~~ 653 (756)
.|+.| .++|+.+.+.+|+++|..+..
T Consensus 505 ~~gI~~lq~~gk~~~is~e~l~~~l~~A~~~~~ 537 (723)
T 3cdi_A 505 RDGISALQMDIKIEGITKEIMQVALNQAKGARL 537 (723)
T ss_dssp SSCEEEEEEEECSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCccCCcCHHHHHHHHHHHHHHHH
Confidence 55554 378999999999999987643
No 24
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.95 E-value=1.5e-27 Score=269.47 Aligned_cols=222 Identities=9% Similarity=0.002 Sum_probs=182.0
Q ss_pred cCccccCcchhcccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecC----CC
Q psy9088 394 LDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVI----PK 468 (756)
Q Consensus 394 ~~~~~~~rL~p~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~----P~ 468 (756)
.-.++|..|.+..+.+ ++|.+++|+|||+++++| +.+++|++++|+|||++ +.|+|+|||+|+..... |.
T Consensus 292 ~~~~~~~~~~~~~~R~---~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~--~~G~T~Vl~~Vt~gp~~~~~~~~ 366 (549)
T 3gme_A 292 ELGEILHAIEKNVVRS---RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALF--TRGETQALVTATLGTARDAQVLD 366 (549)
T ss_dssp -----CCHHHHHHHHH---HHHHTCCCTTSCCTTCCCCEEEEECCCSSSSEEEEE--EETTEEEEEEEEEEC--------
T ss_pred HHHHHHHHHHHHHHHH---HHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEE--EECCeEEEEEEEecCcccccCcc
Confidence 3456788888888888 899999999999999999 89999999999999999 49999999999743321 11
Q ss_pred -CCCCCccEEEEEEEeCCCCCcCc-ccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCch
Q psy9088 469 -ATRPNEGLLFINAELSPMASPQF-ETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNL 546 (756)
Q Consensus 469 -~~~P~eG~L~VnVe~sP~asp~f-r~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNL 546 (756)
...+++|++.++++|+|+|+... ++|+++.++.+++++++++|++ +|+++.+ +.|+|+|++.||++|||.
T Consensus 367 ~l~~~~~g~~~~~y~~~P~st~e~~~~g~~~~Reie~~~li~raL~~--vI~~~~~------~P~tI~V~~~VLesDGs~ 438 (549)
T 3gme_A 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA--VMPDMDK------FPYTVRVVSEITESNGSS 438 (549)
T ss_dssp -------CCEEEEEECCGGGTTCCCCSSCCCSSHHHHHHHHHHHHTT--TCCCTTT------CCCEEEEEEEEEECSSCH
T ss_pred ccCCCCceEEEEEEEeCCCCcCCcccCCCCChhHHHHHHHHHHHHHH--hcCcccc------CCeEEEEEEEEEECCCCH
Confidence 22357899999999999998754 3567888999999999999986 6775443 458899999999999999
Q ss_pred hhHHHHHHHHHHhhCCCCceeecCCceEEecCCCCCCCCcccCCceEEEEEEEeCCce--eEEEeCChhHhhhcCCceEE
Q psy9088 547 LGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGS--EGSTVPGFTECIQLDTALAL 624 (756)
Q Consensus 547 lDAaslAa~AAL~dtrIP~V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~--~iLvDPT~eEE~~sda~LtV 624 (756)
++|+++|+++||.|+++| |.+++.++|+|+++++. .+++||+.+|+..++..+.|
T Consensus 439 ~~AsI~aa~lAL~DAGvP-----------------------m~~~Vaavs~Gli~~g~~~~iL~D~~~~Ed~~~d~d~~V 495 (549)
T 3gme_A 439 SMASVCGASLALMDAGVP-----------------------IKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKV 495 (549)
T ss_dssp HHHHHHHHHHHHHHHTCC-----------------------CSSCCEEEEEEEEEETTEEEEEESCCHHHHHHSSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCC-----------------------cccceeEEEEEEEcCCCceEEEecCChHHHccCCceEEE
Confidence 999999999999999999 56999999999998642 57899999999999988988
Q ss_pred EEE------eec-ccccccCHHHHHHHHHHHHhh
Q psy9088 625 SQD------RQK-LGVDSAYANLVNKTDRILLDE 651 (756)
Q Consensus 625 av~------~Qk-~G~g~~t~e~l~kai~lAld~ 651 (756)
+.+ .|. ...++|+.+++.+|+++|..+
T Consensus 496 a~t~~gitalqmd~ki~G~s~~~l~~~L~~A~~g 529 (549)
T 3gme_A 496 AGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529 (549)
T ss_dssp EECSSCEEEEEEEECCSCCCHHHHHHHHHHHHHH
T ss_pred EecCCCeEEEEEccccCCcCHHHHHHHHHHHHHH
Confidence 865 333 234569999999999999888
No 25
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=273.35 Aligned_cols=218 Identities=14% Similarity=0.058 Sum_probs=189.1
Q ss_pred ccccCcchhcccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCCC--C--
Q psy9088 396 DGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKA--T-- 470 (756)
Q Consensus 396 ~~~~~rL~p~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~--~-- 470 (756)
.++|..|.+..+.+ ++|.+++|+|||+++++| +.+++|++++|+|||++. .|+|+|||+|+++...|.. +
T Consensus 298 ~~~~~~~~~~~~r~---~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~--~G~T~Vl~~Vt~~~~~~~~~~d~~ 372 (630)
T 3u1k_A 298 IESFNVVAKEVFRS---IVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQ--RGQTQVLCTVTFDSLESGIKSDQV 372 (630)
T ss_dssp HHHHHHHHHHHHHH---HHHHHSCCTTSCCTTCCCCEEEEECCSTTSSEEEEEE--ETTEEEEEEEEEECGGGGSCSSHH
T ss_pred HHHHHHHHHHHHHH---HHhcCCCCCCCCCCccccceEEEECCCCCCCceEEEE--ECCeEEEEEEEcCCCCchhccccc
Confidence 35677888887777 899999999999999999 899999999999999994 9999999999998765532 1
Q ss_pred -----CCCccEEEEEEEeCCCCCcCc-ccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCC
Q psy9088 471 -----RPNEGLLFINAELSPMASPQF-ETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDG 544 (756)
Q Consensus 471 -----~P~eG~L~VnVe~sP~asp~f-r~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DG 544 (756)
.+++|++.++++++|+|+..+ ++|+++.++..++++++++|++ +|+. ++.|+|+|++.||++||
T Consensus 373 ~~~l~~~~~g~~~~~y~~~P~st~e~~~~g~~~rREi~~~~Li~raLr~--vi~~--------~~p~tI~V~~~VLesDG 442 (630)
T 3u1k_A 373 ITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYP--VIPR--------DFPFTIRVTSEVLESNG 442 (630)
T ss_dssp HHHHHCCCGGGEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGG--GSCT--------TCSSEEEEEEEEEECSS
T ss_pred ccccCCCCceEEEEEEEecCCcccccccCCCCChHHHHHHHHHHHHHHh--hCcc--------cCCeEEEEEEEEEEcCC
Confidence 368899999999999998765 3577889999999999999985 5652 35689999999999999
Q ss_pred chhhHHHHHHHHHHhhCCCCceeecCCceEEecCCCCCCCCcccCCceEEEEEEEeCC-----c--e--eEEEeCChhHh
Q psy9088 545 NLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNG-----G--S--EGSTVPGFTEC 615 (756)
Q Consensus 545 NLlDAaslAa~AAL~dtrIP~V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d-----~--~--~iLvDPT~eEE 615 (756)
|.++|+++|+++||.|+++| |.+++.++|+|++++ + . .+|+||+..|+
T Consensus 443 s~~~AsI~aa~lAL~dAGIP-----------------------l~~~Vaavs~gli~~~~~~~g~~~~~~iLlD~~~~Ed 499 (630)
T 3u1k_A 443 SSSMASACGGSLALMDSGVP-----------------------ISSAVAGVAIGLVTKTDPEKGEIEDYRLLTDILGIED 499 (630)
T ss_dssp CHHHHHHHHHHHHHHHTTCC-----------------------CSSCCEEEEEEEEEEECSSSSCEEEEEEEESCCHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCC-----------------------cccceEEEEEEEecCCCcccccccCceEEecCCHHHH
Confidence 99999999999999999999 569999999999983 1 1 68999999999
Q ss_pred hhcCCceEEEEE------eecccc-cccCHHHHHHHHHHHHhh
Q psy9088 616 IQLDTALALSQD------RQKLGV-DSAYANLVNKTDRILLDE 651 (756)
Q Consensus 616 ~~sda~LtVav~------~Qk~G~-g~~t~e~l~kai~lAld~ 651 (756)
..++..+.|+.+ .|..+. .+|+.+.+.+|+++|..+
T Consensus 500 ~~~d~d~~Va~t~~gIt~lQ~~~k~~~~s~~~l~~aL~~A~~g 542 (630)
T 3u1k_A 500 YNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVA 542 (630)
T ss_dssp HTSSEEEEEEECSSCEEEEEEEECSSCBCHHHHHHHHHHHHHH
T ss_pred hhCcceEEEEecCCceEEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 999988888865 565554 489999999999999887
No 26
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.95 E-value=1.7e-27 Score=277.86 Aligned_cols=219 Identities=15% Similarity=0.076 Sum_probs=185.7
Q ss_pred cccCcchhcccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCC-----CC
Q psy9088 397 GAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPK-----AT 470 (756)
Q Consensus 397 ~~~~rL~p~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~-----~~ 470 (756)
.+|..+.+..+.+ ..+.+++|+|||.++++| +.+++|++++|+|||++. .|+|+|||+|+.....|. ..
T Consensus 336 ~~~~~~~k~~~r~---~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~--~G~TqVL~~Vt~Gp~~~~~~~d~l~ 410 (757)
T 1e3p_A 336 AAYRALTKSLVRE---RVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFE--RGETQILGVTTLNMLRMEQQLDTLS 410 (757)
T ss_dssp HHHHHHHHHHHHH---HHHHTCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEE--ETTEEEEEEEEEEEGGGSEECCSSS
T ss_pred HHHHHHHHHHHHH---HHhcCCCCCCCCCcccccceeEEeCCCCCCCEEEEEE--ECCcEEEEEEEecCCCccccccccC
Confidence 5677777777767 677899999999999999 899999999999999994 999999999985433322 12
Q ss_pred CCCccEEEEEEEeCCCCCcCcc-cCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhH
Q psy9088 471 RPNEGLLFINAELSPMASPQFE-TGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGC 549 (756)
Q Consensus 471 ~P~eG~L~VnVe~sP~asp~fr-~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDA 549 (756)
.+++|++.++++|+|+|+..++ +|+++.++.+++++++++|++. |+. .+++.|+|+|++.||++|||+++|
T Consensus 411 ~~~~g~~~~~y~f~P~st~e~~~~g~~~~reie~~~li~raL~~v--I~~------~~~~P~tI~V~~~VLesDGs~~~A 482 (757)
T 1e3p_A 411 PVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAERAIVPV--LPT------REEFPYAIRQVSEALGSNGSTSMG 482 (757)
T ss_dssp SCCEESEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGG--CCC------TTTSCEEEEEEEEEEECSSCHHHH
T ss_pred CCCceEEEEEEEeCCcccccccCCCCCchhHHHHHHHHHHHHHHh--ccc------cccCCEEEEEEEEEEECCCCHHHH
Confidence 5688999999999999988764 4678899999999999999873 432 245679999999999999999999
Q ss_pred HHHHHHHHHhhCCCCceeecCCceEEecCCCCCCCCcccCCceEEEEEEEeCCc------eeEEEeCChhHhhhcCCceE
Q psy9088 550 CSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGG------SEGSTVPGFTECIQLDTALA 623 (756)
Q Consensus 550 aslAa~AAL~dtrIP~V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~------~~iLvDPT~eEE~~sda~Lt 623 (756)
+++|+++||+++++| +.+++.++|+|++.++ ..+|+||+..|+..++..++
T Consensus 483 si~aa~lAL~dAgIP-----------------------~k~~Vaavs~gli~eg~dg~~~~~iLlDp~~~Ed~~gd~d~~ 539 (757)
T 1e3p_A 483 SVCASTMSLLNAGVP-----------------------LKAPVAGIAMGLISQEINGETHYVALTDILGAEDAFGDMDFK 539 (757)
T ss_dssp HHHHHHHHHHHHTCC-----------------------CSSCCEEEEEEEEEEESSSCEEEEEEESCCHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHcCCC-----------------------cccceEEEEEEEEecCCCCccceeEEeCCCHHHHhccCceEE
Confidence 999999999999999 5688999999999332 26899999999999999999
Q ss_pred EEEE------eecccc-cccCHHHHHHHHHHHHhh
Q psy9088 624 LSQD------RQKLGV-DSAYANLVNKTDRILLDE 651 (756)
Q Consensus 624 Vav~------~Qk~G~-g~~t~e~l~kai~lAld~ 651 (756)
|+.+ +|..|. ++++.+.+.+|+++|..+
T Consensus 540 Va~t~~~It~lQ~~gk~~gi~~e~l~~aL~~A~~~ 574 (757)
T 1e3p_A 540 VAGTKEFVTALQLDTKLDGIPASVLAAALKQARDA 574 (757)
T ss_dssp EEECSSSEEEEEEEECSSCCCHHHHHHHHHHHHHH
T ss_pred EEecCCeEEEEEEcCCccccCHHHHHHHHHHHHHH
Confidence 9754 555554 789999999999999877
No 27
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.94 E-value=1.3e-26 Score=268.95 Aligned_cols=241 Identities=8% Similarity=0.021 Sum_probs=193.3
Q ss_pred cccCcchhcccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCC-----CC
Q psy9088 397 GAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPK-----AT 470 (756)
Q Consensus 397 ~~~~rL~p~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~-----~~ 470 (756)
.+|..|.+..+-+ .+|.+++|+|||+++++| +.+++|++++|+|||++ +.|+|+|||+|+.....|. ..
T Consensus 311 ~~~~~~~~~~~r~---~il~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~--~~G~TkVl~~Vt~Gp~~~~~~~d~l~ 385 (726)
T 4aid_A 311 AIFKELEADVVRR---GILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALF--TRGETQAIVVATLGTGDDEQFIDALE 385 (726)
T ss_dssp HHHHHHHHHHHHH---HHHSSSBCTTSCBTTCCCCEEEEECSSTTSSEEEEE--EETTEEEEEEEEEECGGGSEEEEETT
T ss_pred HHHHHHHHHHHHH---HHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEE--EeCCeEEEEEEEeCCCCccccccccc
Confidence 4566777776666 788999999999999999 89999999999999999 4999999999964332221 22
Q ss_pred CCCccEEEEEEEeCCCCCcCcc-cCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhH
Q psy9088 471 RPNEGLLFINAELSPMASPQFE-TGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGC 549 (756)
Q Consensus 471 ~P~eG~L~VnVe~sP~asp~fr-~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDA 549 (756)
.+++|++.++++|+|+|+..++ +|+++.++.+++++++++|++ +|++ .+++.|+|+|++.||++|||.++|
T Consensus 386 ~~~~g~~~~~y~~~P~st~er~~~g~~~~Reie~~~li~raL~~--vI~~------~~~~P~tI~V~~~VLesDGs~~~A 457 (726)
T 4aid_A 386 GTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRP--MLPT------KEDFPYTIRLVSEITESNGSSSMA 457 (726)
T ss_dssp EEEEECEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGG--GSCC------TTTCCCEEEEEEEEEECSSCHHHH
T ss_pred CCCceEEEEEEEeCCCcccccccCCCcchhhHHHHHHHHHHHHH--hcCc------cccCCeEEEEEEEEEEcCCcHHHH
Confidence 3578999999999999986553 466889999999999999987 4543 245678999999999999999999
Q ss_pred HHHHHHHHHhhCCCCceeecCCceEEecCCCCCCCCcccCCceEEEEEEEeCCc--eeEEEeCChhHhhhcCCceEEEEE
Q psy9088 550 CSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGG--SEGSTVPGFTECIQLDTALALSQD 627 (756)
Q Consensus 550 aslAa~AAL~dtrIP~V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~--~~iLvDPT~eEE~~sda~LtVav~ 627 (756)
|++|+++||.|+++| |.+++.++|+|+++++ ..+++||+..|+..++..+.|+.+
T Consensus 458 sI~aa~lAL~DAGIP-----------------------m~~~VaavsvGli~~g~~~~iLlD~~~~Ed~~gd~d~~Va~t 514 (726)
T 4aid_A 458 TVCGSSLAMMDAGVP-----------------------LVRPVSGIAMGLILEQDGFAVLSDILGDEDHLGDMDFKVAGT 514 (726)
T ss_dssp HHHHHHHHHHHTTCC-----------------------CSSCCEEEEEEEEECSSCEEEEESCCTTGGGGSSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCc-----------------------cccCeeEEEEEEEcCCCceEEEecCChhHHhcCCceEEEEec
Confidence 999999999999999 5689999999999753 247889999999999888888765
Q ss_pred ------eeccc-ccccCHHHHHHHHHHHHhhCc-------cccCcceeeeecccchHHHh
Q psy9088 628 ------RQKLG-VDSAYANLVNKTDRILLDEGE-------KDSGETKVKVEKVGPGIADL 673 (756)
Q Consensus 628 ------~Qk~G-~g~~t~e~l~kai~lAld~~~-------~~sk~~~~~v~~~~~~i~~~ 673 (756)
+|..+ .++|+.+.+.+|+++|..+.. ++-+..+-.+.+++|-|..+
T Consensus 515 ~~gIt~lQ~d~k~~~~s~e~l~~aL~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~ 574 (726)
T 4aid_A 515 SEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETI 574 (726)
T ss_dssp TTEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC----
T ss_pred CCceEEEEecCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEE
Confidence 55554 568999999999999987532 22333444566777765543
No 28
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=99.89 E-value=1.5e-25 Score=227.49 Aligned_cols=181 Identities=11% Similarity=0.032 Sum_probs=133.6
Q ss_pred Cccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCC-CCCCCCccEEEEEEEeCCCCCcCcccCCCChhHHHH
Q psy9088 426 DVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIP-KATRPNEGLLFINAELSPMASPQFETGRQTDTSVMI 503 (756)
Q Consensus 426 ~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P-~~~~P~eG~L~VnVe~sP~asp~fr~Gr~se~a~eL 503 (756)
.+|+| +.+++|.+++|+|||++ +.|+|+|+|+|+++...+ ..+.+++|.| +|++.|++ |++++. ++
T Consensus 2 ~~e~R~i~ie~g~l~~A~GSa~v--~~G~T~Vl~~V~~~~e~~~~~~~~~~~~l--~v~~~p~~------G~~~~~--e~ 69 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACF--SQGATCIWASCSGPGDVHASKASDEAMTL--DISYRANC------GDNKFN--VL 69 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBC--CBTTCEEECCCCSSCC---------------CCCSSCCC------C--CCS--SC
T ss_pred CCcccceEEEECCCCCCCeEEEE--EECCcEEEEEEECCCCCcccccCCceEEE--EEEEcCCC------CCCCHH--HH
Confidence 46899 79999999999999998 599999999999987533 3345666666 56777864 444444 88
Q ss_pred HHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhCCCCceeecCCceEEecCCCCCC
Q psy9088 504 NRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDP 583 (756)
Q Consensus 504 SslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dtrIP~V~v~~d~v~I~~~de~e~ 583 (756)
+++|++.|++ .|+++.+ | .|.|+|+++||++|||+++|+++|+++||.+++||
T Consensus 70 ~~li~r~l~~--~i~~~~~---p---~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP------------------- 122 (222)
T 3krn_A 70 NNIIHSTLSN--AINLELF---P---HTTISVTVHGIQDDGSMGAVAINGACFALLDNGMP------------------- 122 (222)
T ss_dssp TTHHHHC--C--CSCC-----------CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCC-------------------
T ss_pred HHHHHHHHHH--hccHHhC---C---CcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCC-------------------
Confidence 9999999987 4665443 4 48999999999999999999999999999999999
Q ss_pred CCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEE---E------eecccccccCHHHHHHHHHHHHhh
Q psy9088 584 IPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQ---D------RQKLGVDSAYANLVNKTDRILLDE 651 (756)
Q Consensus 584 vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav---~------~Qk~G~g~~t~e~l~kai~lAld~ 651 (756)
+.++|.++|+|++++ .+++|||.+|+..++..++|++ + ....+.|.++.+++.+|+++|...
T Consensus 123 ----~~~~v~avsvg~~~g--~~llDpt~~Ee~~~~~~l~va~~~~~~~~~~i~~vq~~g~~~~~~l~~~l~~a~~~ 193 (222)
T 3krn_A 123 ----FETVFCGVLIVRVKD--ELIIDPTAKQEAASTGRVLFSVCKGSDGHPEVCAMDAIGHWDFIQLEAAWSLAQPS 193 (222)
T ss_dssp ----TTSCCCCCCCEECSS--SEESSCCTTTTTSCC-CCCCEECCCSSSSCCEEEECCBSSCTTHHHHTHHHHTTHH
T ss_pred ----ccCcEEEEEEEEECC--EEEeCCCHHHHhccCccEEEEEEccCCCCCCEEEEEEeCCcCHHHHHHHHHHHHHH
Confidence 568999999999887 7999999999999999999998 3 111234579999999999998877
No 29
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.80 E-value=8.2e-19 Score=201.71 Aligned_cols=181 Identities=12% Similarity=0.093 Sum_probs=148.7
Q ss_pred eEEeeccccc-cccceEeecccCCcEEEEEEEeeecCCCCCCCCccEEEEEEEeCCCCCc----Cc--ccCCCChhHHHH
Q psy9088 431 SSENWTSISA-ENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASP----QF--ETGRQTDTSVMI 503 (756)
Q Consensus 431 ~~I~tGvIss-AnGSA~vsa~Vg~GkVIcgVK~EV~~P~~~~P~eG~L~VnVe~sP~asp----~f--r~Gr~se~a~eL 503 (756)
+.+++|.++. |+|||++ ++|+|+|||+|+++...|.. +...|.|+++..|++.. .| |.|+|++.+.++
T Consensus 17 i~ietG~~a~qA~GSa~v--~~G~T~VL~tv~~~~~~~~~---df~pL~v~y~~~~~a~g~iPg~f~kRegrps~~e~li 91 (630)
T 3u1k_A 17 LEISSGKLARFADGSAVV--QSGDTAVMVTAVSKTKPSPS---QFMPLVVDYRQKAAAAGRIPTNYLRREVGTSDKEILT 91 (630)
T ss_dssp EEEEESSSCTTSSEEEEE--EETTEEEEEEEEECSSCCSS---SSCCEEEEEECSEETTTTEECTTC-----CCHHHHHH
T ss_pred EEEEeCCccccCCeeEEE--EECCeEEEEEEEecCCCCCC---CeeEEEEEEEecccccCCCCccccccCCCCCHHHHHH
Confidence 5789999985 9999998 49999999999998764421 45558999998887762 12 346799999999
Q ss_pred HHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCch--hhHHHHHHHHHHhhCCCCceeecCCceEEecCCCC
Q psy9088 504 NRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNL--LGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEK 581 (756)
Q Consensus 504 SslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNL--lDAaslAa~AAL~dtrIP~V~v~~d~v~I~~~de~ 581 (756)
+++|.+.|++. ++ ..++|.+.|+++||++||+. ..||++|+.+||.+++||
T Consensus 92 sRlIdR~lRp~--~~--------~~~~~~~qI~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP----------------- 144 (630)
T 3u1k_A 92 SRIIDRSIRPL--FP--------AGYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLSDIP----------------- 144 (630)
T ss_dssp HHHHHHHHGGG--SC--------TTCCCCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHSSSC-----------------
T ss_pred HHHHhHHhhhc--cc--------ccCCCceEEEEEEEECCCCCCHHHHHHHHHHHHHhccCCC-----------------
Confidence 99999999984 43 33467888999999999997 678999999999999999
Q ss_pred CCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEEee------cccccccCHHHHHHHHHHHHhh
Q psy9088 582 DPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQ------KLGVDSAYANLVNKTDRILLDE 651 (756)
Q Consensus 582 e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~~Q------k~G~g~~t~e~l~kai~lAld~ 651 (756)
+.+++.++++|++++ .+++|||.+|++.++..|+|+.+.. ..+...++.+++.+|+++|..+
T Consensus 145 ------~~~~vaav~vg~i~g--~~vldPt~~E~~~s~~dl~Va~t~~~~i~mve~~~~~~se~~~~~al~~a~~~ 212 (630)
T 3u1k_A 145 ------WNGPVGAVRIGIIDG--EYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLEASAENILQQDFCHAIKVGVKY 212 (630)
T ss_dssp ------CCCCCEEEEEEEETT--EEEESCCHHHHHTEEEEEEEEEETTTEEEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred ------cCCCeEEEEEEEECC--EEEECCCHHHHhhCCceEEEEEccCCcEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 568899999999988 7999999999999999999998711 2334458999999999998876
No 30
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.77 E-value=2.8e-18 Score=199.88 Aligned_cols=180 Identities=13% Similarity=0.107 Sum_probs=148.2
Q ss_pred eEEeeccc-cccccceEeecccCCcEEEEEEEeeecCCCCCCCCccEEEEEEEeCCCCCc------Cc--ccCCCChhHH
Q psy9088 431 SSENWTSI-SAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASP------QF--ETGRQTDTSV 501 (756)
Q Consensus 431 ~~I~tGvI-ssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~~~P~eG~L~VnVe~sP~asp------~f--r~Gr~se~a~ 501 (756)
+.+++|.+ .+|+||+++. +|+|.|||+|+++. .|. |..+.+-++|++.+.... .| |.|+|++.+.
T Consensus 22 i~ietg~ia~qA~GSv~v~--~G~T~Vl~tv~~~~-~~~---~~~~f~pltv~y~ek~~a~g~ipg~f~kReGrpse~e~ 95 (723)
T 3cdi_A 22 VTLETGMMARQATAAVMVS--MDDTAVFVTVVGQK-KAK---PGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 95 (723)
T ss_dssp EEEEESSSCTTSSEEEEEE--ETTEEEEEEEEECS-SCC---SSCCSCCEEEEEEECGGGGTCCCC-------CCCHHHH
T ss_pred EEEEeCccccCCCeeEEEE--ECCEEEEEEEEecC-CCC---CCCCeeeEEEEEeEeccccccCCCccccCCCCCChHHh
Confidence 57899988 5899999984 99999999999984 442 345666677877755321 13 5689999999
Q ss_pred HHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCch-hh-HHHHHHHHHHhhCCCCceeecCCceEEecCC
Q psy9088 502 MINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNL-LG-CCSIAALAALAHFRHPDVTSTGDQIIIHSAA 579 (756)
Q Consensus 502 eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNL-lD-AaslAa~AAL~dtrIP~V~v~~d~v~I~~~d 579 (756)
.++++|.+.|++. .|+.+.|.++|+++||++||+. +| ||++||.+||..++||
T Consensus 96 l~sRlIdR~lRpl----------fp~~~~~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP--------------- 150 (723)
T 3cdi_A 96 LIARLIDRPIRPL----------FPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIP--------------- 150 (723)
T ss_dssp HHHHHHHHHHGGG----------SCTTCCSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSS---------------
T ss_pred HHHHHhCccchhc----------ccccCcceEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCC---------------
Confidence 9999999999872 4677789999999999999986 66 9999999999999999
Q ss_pred CCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE-----eecccccccCHHHHHHHHHHHHhh
Q psy9088 580 EKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD-----RQKLGVDSAYANLVNKTDRILLDE 651 (756)
Q Consensus 580 e~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~-----~Qk~G~g~~t~e~l~kai~lAld~ 651 (756)
+...+.++++|++++ .+++|||.+|++.++..|+|+-+ +..+|...++.+++.+|+++|...
T Consensus 151 --------~~~pv~av~vg~i~g--~~v~nPt~~e~~~s~~~lvvagt~~~i~mve~~~~~~se~~~~~al~~a~~~ 217 (723)
T 3cdi_A 151 --------FNGPIGAARVGYIND--QYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQ 217 (723)
T ss_dssp --------CCCCCCCEEEEEETT--EEEESCCTTGGGGCSEEEEEEECSSCEEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred --------CCCCeEEEEEEEECC--EEEECcCHHHHHhCCceEEEEccCCEEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 457789999999987 79999999999999988888754 335666779999999999998877
No 31
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.67 E-value=1.5e-15 Score=176.74 Aligned_cols=180 Identities=16% Similarity=0.102 Sum_probs=143.5
Q ss_pred eEEeecccc-ccccceEeecccCCcEEEEEEEeeecCCCCCCCCccE--EEEEEE-------eCCCCCcCcccCCCChhH
Q psy9088 431 SSENWTSIS-AENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGL--LFINAE-------LSPMASPQFETGRQTDTS 500 (756)
Q Consensus 431 ~~I~tGvIs-sAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~~~P~eG~--L~VnVe-------~sP~asp~fr~Gr~se~a 500 (756)
+.+++|.+. +|+||+++ +.|+|.|||+|+++...| +..++ |.+++. +-|.....+ .|+|++.+
T Consensus 30 i~ietg~~ak~A~GSvlv--~~GdT~VL~tv~~~~~~~----~g~df~pltveY~ek~~a~G~iPg~~~~R-EGrps~~~ 102 (726)
T 4aid_A 30 LVLETGRIARQADGAVLA--TMGETVVLATAVFAKSQK----PGQDFFPLTVNYQEKTFAAGKIPGGFFKR-EGRPSEKE 102 (726)
T ss_dssp EEEEESSSCTTSSEEEEE--EETTEEEEEEEEECSSCC----TTCCSCCEEEEEEECGGGGTCCCCSTTCS-CCSCCHHH
T ss_pred EEEEECCccCCCCeeEEE--EECCeEEEEEEEecCCCC----CCCCCcCceeeeeeehhhcccCCCcccCC-CCCCCchh
Confidence 578999876 69999998 499999999999986433 23344 555554 334333333 38999999
Q ss_pred HHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCc-hhh-HHHHHHHHHHhhCCCCceeecCCceEEecC
Q psy9088 501 VMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGN-LLG-CCSIAALAALAHFRHPDVTSTGDQIIIHSA 578 (756)
Q Consensus 501 ~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGN-LlD-AaslAa~AAL~dtrIP~V~v~~d~v~I~~~ 578 (756)
.+++++|.+.|++ .+++ .+.|.+.|+++||++||+ .+| |+++|+.+||....+|
T Consensus 103 ~li~RlIdR~lRp--lf~~--------~~~~evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP-------------- 158 (726)
T 4aid_A 103 TLVSRLIDRPIRP--LFVK--------GFKNEVQVVVTVLQHDLENDPDILGMVAASAALCLSGAP-------------- 158 (726)
T ss_dssp HHHHHHHHHHHGG--GBCT--------TCCSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCS--------------
T ss_pred hhHHHHhCCcccc--cccc--------CCccceEEEEEEEecCCCCChhHHHHHHHHHHHHhcCCC--------------
Confidence 9999999999987 3443 334679999999999986 456 5889999999999998
Q ss_pred CCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE-----eecccccccCHHHHHHHHHHHHhhC
Q psy9088 579 AEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD-----RQKLGVDSAYANLVNKTDRILLDEG 652 (756)
Q Consensus 579 de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~-----~Qk~G~g~~t~e~l~kai~lAld~~ 652 (756)
+...+.++++|++++ .+++|||.+|.+.++..|+|+.+ +...+.+.|+.+++.+|+++|..+.
T Consensus 159 ---------~~~~vaaV~Vg~i~g--~~vldPt~~E~~~s~~dl~va~t~~~i~mve~~~~~~se~~~~~al~~a~~~i 226 (726)
T 4aid_A 159 ---------FMGPIGAARVGWVDG--AYVLNPTLDEMKESKMDLVVAGTADAVMMVESEIQELSEEIVLGGVNFAHQQM 226 (726)
T ss_dssp ---------BCCCCEEEEEEEETT--EEEESCCHHHHHTCSEEEEEEECSSCEEEEEEEESSBCHHHHHHHHHHHHHHT
T ss_pred ---------cCCCeEEEEEEEECC--EEEECCCHHHHhhCceeEEEEEeCCeEEEEEccCCCCCHHHHHHHHHHHHHHH
Confidence 458899999999998 79999999999999999998865 2234556799999999999998763
No 32
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.64 E-value=2.7e-15 Score=169.97 Aligned_cols=179 Identities=13% Similarity=0.069 Sum_probs=139.2
Q ss_pred eEEeecccc-ccccceEeecccCCcEEEEEEEeeecCCCCCCCCccE--EEEEEE-------eCCCCCcCcccCCCChhH
Q psy9088 431 SSENWTSIS-AENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGL--LFINAE-------LSPMASPQFETGRQTDTS 500 (756)
Q Consensus 431 ~~I~tGvIs-sAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~~~P~eG~--L~VnVe-------~sP~asp~fr~Gr~se~a 500 (756)
+.+++|.+. +|+||+++ +.|+|.|||+|+++...| +..++ |.+++. .-|..... |.|+|++.+
T Consensus 16 i~ietg~~ak~A~GSvlv--~~GdT~Vl~tv~~~~~~~----~g~df~Pltv~Y~e~~~a~G~iPg~~~~-REGrps~~~ 88 (549)
T 3gme_A 16 VTLETGMMARQATAAVMV--SMDDTAVFVTVVGQKKAK----PGQDFFPLTVNYQERTYAAGRIPGSFFR-REGRPSEGE 88 (549)
T ss_dssp EEEEESSSCTTSSEEEEE--EETTEEEEEEEEECSSCC----TTCCSCCEEEEEEECGGGTTCCCSCC------CCCHHH
T ss_pred EEEEECCccCCCCeEEEE--EECCEEEEEEEEecCCCC----CCCCCccceeeeeeehhhcccCCCcCcC-cCCCCChhh
Confidence 578999876 69999998 499999999999976433 33466 555553 22322112 348899999
Q ss_pred HHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCC-chhh-HHHHHHHHHHhhCCCCceeecCCceEEecC
Q psy9088 501 VMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDG-NLLG-CCSIAALAALAHFRHPDVTSTGDQIIIHSA 578 (756)
Q Consensus 501 ~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DG-NLlD-AaslAa~AAL~dtrIP~V~v~~d~v~I~~~ 578 (756)
..++++|.+.|++ .++. .+.+.+.|+++||++|| +..| ++++|+.+||....+|
T Consensus 89 ~l~~RlIdR~lRp--lfp~--------~~~~evqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP-------------- 144 (549)
T 3gme_A 89 TLIARLIDRPIRP--LFPE--------GFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIP-------------- 144 (549)
T ss_dssp HHHHHHHHHHHGG--GSCT--------TCCSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSC--------------
T ss_pred hHHHHHhCCcccc--cccc--------CCcccEEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCC--------------
Confidence 9999999999987 3443 33456889999999998 5456 6689999999999998
Q ss_pred CCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE-----eecccccccCHHHHHHHHHHHHhh
Q psy9088 579 AEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD-----RQKLGVDSAYANLVNKTDRILLDE 651 (756)
Q Consensus 579 de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~-----~Qk~G~g~~t~e~l~kai~lAld~ 651 (756)
+.....++++|++++ .+++|||.+|.+.++..|+|+.+ +-..+.+.|+.+++.+|+++|..+
T Consensus 145 ---------~~gpvaaV~Vg~i~g--~~vlnPt~~e~~~s~~dl~va~t~~~i~mve~e~~~~se~~~~~al~~a~~~ 211 (549)
T 3gme_A 145 ---------FNGPIGAARVGYIND--QYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQ 211 (549)
T ss_dssp ---------CCCCCEEEEEEEETT--EEEESCCTTTTTTCSBCEEEEECSSCEEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred ---------cCCCeeEEEEEEECC--EEEECCCHHHHhhCceEEEEEecCCeEEEEEccCCCCCHHHHHHHHHHHHHH
Confidence 458889999999998 79999999999999999999865 112344679999999999999876
No 33
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.52 E-value=5.5e-13 Score=156.26 Aligned_cols=179 Identities=13% Similarity=0.099 Sum_probs=141.1
Q ss_pred eEEeeccc-cccccceEeeccc-CCcEEEEEEEeeecC-CC-CCCCCccEEEEEEE-------eCCCCCcCcccCCCChh
Q psy9088 431 SSENWTSI-SAENGEAVWCPWV-KPSEVLAQVSCNMVI-PK-ATRPNEGLLFINAE-------LSPMASPQFETGRQTDT 499 (756)
Q Consensus 431 ~~I~tGvI-ssAnGSA~vsa~V-g~GkVIcgVK~EV~~-P~-~~~P~eG~L~VnVe-------~sP~asp~fr~Gr~se~ 499 (756)
+.+++|.+ .+|+||+++ +. |+|.|||+|.++-.. |. ...| |.|++. .-|-.. ..|.|+|++.
T Consensus 39 i~~etg~la~qA~GSv~v--~~~G~T~Vl~tv~~~~~~~~~~df~p----Ltv~y~ek~~a~g~iPg~f-~~REGrps~~ 111 (757)
T 1e3p_A 39 IRFETGRLARQAAGSAVA--YLDDDTMVLSATTASKNPKDQLDFFP----LTVDVEERMYAAGKIPGSF-FRREGRPSED 111 (757)
T ss_dssp EEEEESSSCTTSSEEEEE--EETTTEEEEEEEEEEEEECTTCSSCC----EEEEEEECGGGGTCCCCST-TSSCCSCCHH
T ss_pred EEEEECccccCCCeEEEE--EECCCeEEEEEEEecCCCCCCCCCcc----EEEEEEecccccccCCCcc-cccCcCCChH
Confidence 57889987 589999998 48 999999999997643 32 1223 555554 123222 1234889999
Q ss_pred HHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCch--hhHHHHHHHHHHhhCCCCceeecCCceEEec
Q psy9088 500 SVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNL--LGCCSIAALAALAHFRHPDVTSTGDQIIIHS 577 (756)
Q Consensus 500 a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNL--lDAaslAa~AAL~dtrIP~V~v~~d~v~I~~ 577 (756)
+..++++|.+.|++ .++... .-.+.|+++||++||.. .-|+++||.+||....+|
T Consensus 112 e~l~~RlIdR~LRp--lfp~~~--------~~evqv~~~Vls~D~~~~~~~~ai~gAs~AL~~s~iP------------- 168 (757)
T 1e3p_A 112 AILTCRLIDRPLRP--SFKKGL--------RNEIQVVATIMALNPDHLYDVVAINAASASTQLAGLP------------- 168 (757)
T ss_dssp HHHHHHHHHHHHGG--GBCTTB--------CEEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTSS-------------
T ss_pred HHHHHHHHCCcchh--ccccCC--------CCceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCC-------------
Confidence 99999999999997 454432 23599999999999854 899999999999999999
Q ss_pred CCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEEe-------------ec---------ccccc
Q psy9088 578 AAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDR-------------QK---------LGVDS 635 (756)
Q Consensus 578 ~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~~-------------Qk---------~G~g~ 635 (756)
+.+...++++|++++ .+++|||.+|.+.++..|+|+.+. |- .+.+.
T Consensus 169 ----------~~~~vaav~vg~~~g--~~vlnPt~~e~~~s~~dl~va~t~~~~~~~~i~mvE~q~t~~~~~~~~~~~~~ 236 (757)
T 1e3p_A 169 ----------FSGPIGGVRVALIRG--QWVAFPTHTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEA 236 (757)
T ss_dssp ----------BCCCCEEEEEEEETT--EEEESCCHHHHTTEEEEEEEEEEECTTSCEEEEEEEEEECSSHHHHHHTTCCC
T ss_pred ----------CCCceEEEEEEEECC--EEEECCCHHHHhcCceeEEEEeccccCCCCcEEEEEEecccccccccccccCC
Confidence 568889999999988 799999999999998888888762 11 15678
Q ss_pred cCHHHHHHHHHHHHhh
Q psy9088 636 AYANLVNKTDRILLDE 651 (756)
Q Consensus 636 ~t~e~l~kai~lAld~ 651 (756)
++.+++.+|+++|..+
T Consensus 237 ~se~~l~~al~~a~~~ 252 (757)
T 1e3p_A 237 PTEEVVAAGLDAAKPF 252 (757)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988765
No 34
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1
Probab=61.86 E-value=2.6 Score=37.59 Aligned_cols=18 Identities=17% Similarity=0.016 Sum_probs=15.8
Q ss_pred cccccccccCCCCCccce
Q psy9088 413 HFWKESKRAQDWTDVDFM 430 (756)
Q Consensus 413 r~L~~giRpDGR~~~efR 430 (756)
.-|..++|+|||.+.+.|
T Consensus 86 ~IL~e~~RiDGR~~deIr 103 (104)
T 1whu_A 86 IILNEYKRCDGRDSGPSS 103 (104)
T ss_dssp HHTTSSCSCCCCCSSCSC
T ss_pred HHHCCCcCCCCCCccccc
Confidence 557789999999999977
Done!