Your job contains 1 sequence.
>psy9088
MREFPVSNLEKSFVLSGILQNKVKKIIVNIGEDESILKSTTTLEQLLEEINFQRAKEKRQ
YLRNDMFLTQGTSYWTDLFVRYFLFQTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVE
VFRKDSRKLPIGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVYA
SPSRRRMDTKGEVEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVI
FLGSIRYDALKRVYDARTSVSNKFTQRMSFGIFSNNSNSRIEFVKMKGPQGKGFAEMAVT
KPKGYGVETPTSEPGYCETDMWDSDWDDDPEDFYYYRHQRRLSDPSANINMFAKSIWKGP
VNKTTAKAVSEDEGLDSLAHGVAEIEAGDMRDELDDGAYNPLWTMRGFTQTFHFWKESKR
AQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFIN
AELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVL
NYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVF
NGGSEGSTVPGFTECIQLDTALALSQDRQKLGVDSAYANLVNKTDRILLDEGEKDSGETK
VKVEKVGPGIADLISKSDIEPSGIKNQWVSSSDDESSAEDDKAETPRVQSVEDEGDEVML
VDSVNPRTKVREEVVLSGDSEEEDTVMLTDLTPAEK
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9088
(756 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:2444899 - symbol:5031439G07Rik "RIKEN cDNA 503143... 584 9.6e-57 1
UNIPROTKB|Q3SWZ4 - symbol:EXOSC9 "Exosome complex compone... 482 9.2e-53 3
UNIPROTKB|F1S1T6 - symbol:EXOSC9 "Uncharacterized protein... 475 1.3e-52 3
UNIPROTKB|F1MB54 - symbol:EXOSC9 "Exosome complex compone... 478 3.0e-52 3
RGD|1307888 - symbol:Exosc9 "exosome component 9" species... 469 1.7e-50 3
UNIPROTKB|Q06265 - symbol:EXOSC9 "Exosome complex compone... 472 1.2e-47 2
MGI|MGI:1355319 - symbol:Exosc9 "exosome component 9" spe... 470 2.1e-47 2
UNIPROTKB|F1NJI1 - symbol:EXOSC9 "Uncharacterized protein... 465 4.4e-46 2
ZFIN|ZDB-GENE-080204-49 - symbol:zgc:172139 "zgc:172139" ... 437 1.5e-40 1
POMBASE|SPCC757.08 - symbol:SPCC757.08 "exosome subunit R... 355 2.6e-33 2
WB|WBGene00018154 - symbol:exos-9 species:6239 "Caenorhab... 341 6.9e-32 2
TAIR|locus:2103316 - symbol:CER7 "AT3G60500" species:3702... 351 3.6e-31 1
FB|FBgn0030789 - symbol:Rrp45 "Rrp45" species:7227 "Droso... 349 5.8e-31 1
SGD|S000002688 - symbol:RRP45 "Exosome non-catalytic core... 345 1.6e-30 1
TAIR|locus:2089215 - symbol:RRP45a "AT3G12990" species:37... 344 2.0e-30 1
ASPGD|ASPL0000004691 - symbol:AN6111 species:162425 "Emer... 285 1.7e-25 2
CGD|CAL0004911 - symbol:orf19.4078 species:5476 "Candida ... 259 3.0e-21 1
UNIPROTKB|Q96B26 - symbol:EXOSC8 "Exosome complex compone... 209 7.0e-16 1
UNIPROTKB|Q2KHU3 - symbol:EXOSC8 "Exosome complex compone... 203 3.1e-15 1
RGD|1306169 - symbol:Exosc8 "exosome component 8" species... 201 1.5e-14 1
UNIPROTKB|Q95Z11 - symbol:RRP45 "Rrp45p homologue" specie... 210 4.3e-14 1
MGI|MGI:1916889 - symbol:Exosc8 "exosome component 8" spe... 198 7.4e-14 1
UNIPROTKB|E2R7U8 - symbol:EXOSC8 "Uncharacterized protein... 195 2.4e-13 1
TAIR|locus:2202902 - symbol:CW7 "AT1G59520" species:3702 ... 199 9.8e-13 1
GENEDB_PFALCIPARUM|PF13_0340 - symbol:PF13_0340 "exosome ... 201 1.0e-12 1
UNIPROTKB|Q8ID62 - symbol:PF13_0340 "Exosome complex exon... 201 1.0e-12 1
UNIPROTKB|E1BUV1 - symbol:LOC100858560 "Uncharacterized p... 185 6.8e-12 1
TAIR|locus:2202705 - symbol:AT1G60080 "AT1G60080" species... 173 3.4e-10 1
RGD|1309758 - symbol:Exosc7 "exosome component 7" species... 169 3.7e-10 1
POMBASE|SPBC17D1.03c - symbol:SPBC17D1.03c "exosome subun... 170 4.1e-10 1
MGI|MGI:1913696 - symbol:Exosc7 "exosome component 7" spe... 171 4.9e-10 1
UNIPROTKB|Q15024 - symbol:EXOSC7 "Exosome complex compone... 170 6.4e-10 1
ZFIN|ZDB-GENE-050417-47 - symbol:exosc7 "exosome componen... 161 7.0e-09 1
FB|FBgn0034065 - symbol:Rrp42 "Rrp42" species:7227 "Droso... 136 5.2e-06 1
TAIR|locus:2077522 - symbol:AT3G07750 "AT3G07750" species... 118 0.00050 1
>MGI|MGI:2444899 [details] [associations]
symbol:5031439G07Rik "RIKEN cDNA 5031439G07 gene"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] MGI:MGI:2444899
EMBL:AK149782 EMBL:AK170532 IPI:IPI00464302 RefSeq:NP_001028445.1
UniGene:Mm.323925 PhosphoSite:Q3UE31 PRIDE:Q3UE31
Ensembl:ENSMUST00000047144 GeneID:223739 KEGG:mmu:223739
eggNOG:NOG297008 GeneTree:ENSGT00390000004190 HOVERGEN:HBG061712
InParanoid:Q3UE31 OrthoDB:EOG4DJJWJ NextBio:376860 Bgee:Q3UE31
CleanEx:MM_5031439G07RIK Genevestigator:Q3UE31
GermOnline:ENSMUSG00000036046 InterPro:IPR019141 Pfam:PF09741
Uniprot:Q3UE31
Length = 404
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 116/236 (49%), Positives = 165/236 (69%)
Query: 74 YWTDLFVRYFLFQTDSNIDCDDLLFFVRKKYIKTSSRNL-------PKFETEVEVFRKDS 126
+WT +F YF+ + D D+LF+VR+K + + E EVEV+R+DS
Sbjct: 31 FWTWMFSTYFMEKLAPRQD--DMLFYVRRKRAYPGNEGTIDGRKAEAEPEVEVEVYRRDS 88
Query: 127 RKLP-IGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVYASPSRR 185
+KLP +GDPD+DWEE+V LN+I+ + DY +T A+CTR + + ++ SQ+V+ASPS+
Sbjct: 89 KKLPGLGDPDIDWEESVCLNLILQKLDYMVTCAVCTRADGGDIHIHRKKSQQVFASPSKH 148
Query: 186 RMDTKGEVEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSI 245
MD+KGE +M+YP + F +D+F EVF D+ V +GEMVCVELVASD+ + + VIF GSI
Sbjct: 149 PMDSKGEESKMSYPNIFFMIDSFEEVFSDMTVGEGEMVCVELVASDKTNTFQGVIFQGSI 208
Query: 246 RYDALKRVYDARTSVSNKFTQRMSFGIFSNNSNSRIEFVKMKGPQGKGFAEMAVTK 301
RY+ALK+VYD R SV+ + Q+MSFG + N+ +EFV+MKGPQGKG AEMAV++
Sbjct: 209 RYEALKKVYDNRVSVAARMAQKMSFGFYKYNN---MEFVRMKGPQGKGHAEMAVSR 261
>UNIPROTKB|Q3SWZ4 [details] [associations]
symbol:EXOSC9 "Exosome complex component RRP45"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG2123 HOGENOM:HOG000229504 EMBL:BC104587 IPI:IPI00714906
RefSeq:NP_001030225.1 UniGene:Bt.12557 HSSP:O29756 STRING:Q3SWZ4
PRIDE:Q3SWZ4 GeneID:508005 KEGG:bta:508005 CTD:5393
HOVERGEN:HBG051523 InParanoid:Q3SWZ4 KO:K03678 OrthoDB:EOG43TZVZ
NextBio:20868308 Uniprot:Q3SWZ4
Length = 440
Score = 482 (174.7 bits), Expect = 9.2e-53, Sum P(3) = 9.2e-53
Identities = 115/316 (36%), Positives = 175/316 (55%)
Query: 427 VDFMSSENWTSISAENGEAVWCPWVK--PSEVLAQVSCNMVIPKATRPNEGLLFINAELS 484
+D + ++ +I G C V+ + VL QVSC +V PK R EG+LF N ELS
Sbjct: 24 LDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELS 83
Query: 485 PMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDG 544
MA+P FE GRQ+D V +NR LE+C + SKCID ESLCVVA EKVW +RVDL++LN+DG
Sbjct: 84 QMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDG 143
Query: 545 NLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGS 604
N++ SIAA+ AL HFR PDV+ GD++ +++ E+DP+P++I H P+ +S+A F G+
Sbjct: 144 NIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTLEERDPVPLSIHHMPICVSFAFFQQGT 203
Query: 605 EGSTVPGFTECIQLDTAL--ALSQDRQKLGVDSAYANLVNKTDRILLDEGEKDSGETKVK 662
P E +D L A+++ R+ + S+ ++ K D++L K +G VK
Sbjct: 204 YLLVDPSEREERVMDGLLVIAMNKHREICTIQSSGGIMLLK-DQVL--RCSKIAG---VK 257
Query: 663 VEKVGPGIADLISKSD-IEPSGIKNQWVXXXXXXXXXXXXXXXTP-RVQSVEDEGDEVML 720
V ++ I + + G K +V P VE++ +E+
Sbjct: 258 VVEITELIQKALENDQKVRKEGGKFGFVESMANQRITAFKMEKAPIDTSDVEEKAEEI-- 315
Query: 721 VDSVNPRTKVREEVVL 736
+ P ++V + VL
Sbjct: 316 ISEAEPPSEVVSKPVL 331
Score = 52 (23.4 bits), Expect = 9.2e-53, Sum P(3) = 9.2e-53
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 712 EDEG--DEVMLVDSVNPRTKVREE--------VVLSGDSEEEDTVMLT-DLTP 753
EDEG DE +++D + T V +VLS DSEEE+ ++L D P
Sbjct: 358 EDEGGSDEAIILDGMKMDTGVEVSNIGSQDAPIVLS-DSEEEEMIILEPDKNP 409
Score = 51 (23.0 bits), Expect = 9.2e-53, Sum P(3) = 9.2e-53
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1 MREFPVSNLEKSFVLSGILQNK 22
M+E P+SN E+ F+L I + K
Sbjct: 1 MKETPLSNCERRFLLRAIEEKK 22
>UNIPROTKB|F1S1T6 [details] [associations]
symbol:EXOSC9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071028 "nuclear mRNA
surveillance" evidence=IEA] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
GO:GO:0030307 GO:GO:0017091 GO:GO:0000178 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0043928 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 GeneTree:ENSGT00530000063093
OMA:YRNIRIS EMBL:CU861488 EMBL:AEMK01190186
Ensembl:ENSSSCT00000009962 Uniprot:F1S1T6
Length = 442
Score = 475 (172.3 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 98/226 (43%), Positives = 144/226 (63%)
Query: 427 VDFMSSENWTSISAENGEAVWCPWVK--PSEVLAQVSCNMVIPKATRPNEGLLFINAELS 484
+D + ++ +I G C V+ + VL QVSC +V PK R EG+LF N ELS
Sbjct: 24 LDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELS 83
Query: 485 PMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDG 544
MA+P FE GRQ+D V +NR LE+C + SKCID ESLCVVA EKVW +RVDL++LN+DG
Sbjct: 84 QMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDG 143
Query: 545 NLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGS 604
N++ SIAA+ AL HFR PDV+ GD++ +++ E+DP+P++I H P+ +S+A F G+
Sbjct: 144 NIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGT 203
Query: 605 EGSTVPGFTECIQLDTAL--ALSQDRQKLGVDSAYANLVNKTDRIL 648
P E +D L A+++ R+ + S+ ++ K D++L
Sbjct: 204 YLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLK-DQVL 248
Score = 59 (25.8 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 712 EDEG--DEVMLVDSVNPRTKVR--------EEVVLSGDSEEEDTVMLT-DLTP 753
EDEG DE +++DS+ T V +VLS DSEEE+ ++L D P
Sbjct: 360 EDEGGSDEAIILDSIKTDTGVEISNIGSQDAPIVLS-DSEEEEMIILEPDKNP 411
Score = 51 (23.0 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1 MREFPVSNLEKSFVLSGILQNK 22
M+E P+SN E+ F+L I + K
Sbjct: 1 MKETPLSNCERRFLLRAIEEKK 22
>UNIPROTKB|F1MB54 [details] [associations]
symbol:EXOSC9 "Exosome complex component RRP45"
species:9913 "Bos taurus" [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
GO:GO:0030307 GO:GO:0017091 GO:GO:0000178 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0043928 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 GeneTree:ENSGT00530000063093
IPI:IPI00714906 UniGene:Bt.12557 OMA:YRNIRIS EMBL:DAAA02015230
Ensembl:ENSBTAT00000006502 Uniprot:F1MB54
Length = 440
Score = 478 (173.3 bits), Expect = 3.0e-52, Sum P(3) = 3.0e-52
Identities = 114/316 (36%), Positives = 174/316 (55%)
Query: 427 VDFMSSENWTSISAENGEAVWCPWVK--PSEVLAQVSCNMVIPKATRPNEGLLFINAELS 484
+D + ++ +I G C V+ + VL QVSC +V PK R EG+LF N ELS
Sbjct: 24 LDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELS 83
Query: 485 PMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDG 544
MA+P FE GRQ+D V +NR LE+C + SKCID ESLCVVA EKVW +RVDL++LN+DG
Sbjct: 84 QMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDG 143
Query: 545 NLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGS 604
N++ SIAA+ AL HFR PDV+ GD++ +++ E+DP+P++I H P+ +S+A F G+
Sbjct: 144 NIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTLEERDPVPLSIHHMPICVSFAFFQQGT 203
Query: 605 EGSTVPGFTECIQLDTAL--ALSQDRQKLGVDSAYANLVNKTDRILLDEGEKDSGETKVK 662
P E +D L A+++ R+ + S+ ++ K D++L K +G VK
Sbjct: 204 YLLVDPSEREERVMDGLLVIAMNKHREICTIQSSGGIMLLK-DQVL--RCSKIAG---VK 257
Query: 663 VEKVGPGIADLISKSD-IEPSGIKNQWVXXXXXXXXXXXXXXXTP-RVQSVEDEGDEVML 720
V ++ I + + G K + P VE++ +E+
Sbjct: 258 VVEITELIQKALENDQKVRKEGGKFGFAESMANQRITAFKMEKAPIDTSDVEEKAEEI-- 315
Query: 721 VDSVNPRTKVREEVVL 736
+ P ++V + VL
Sbjct: 316 ISEAEPPSEVVSKPVL 331
Score = 52 (23.4 bits), Expect = 3.0e-52, Sum P(3) = 3.0e-52
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 712 EDEG--DEVMLVDSVNPRTKVREE--------VVLSGDSEEEDTVMLT-DLTP 753
EDEG DE +++D + T V +VLS DSEEE+ ++L D P
Sbjct: 358 EDEGGSDEAIILDGMKMDTGVEVSNIGSQDAPIVLS-DSEEEEMIILEPDKNP 409
Score = 51 (23.0 bits), Expect = 3.0e-52, Sum P(3) = 3.0e-52
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1 MREFPVSNLEKSFVLSGILQNK 22
M+E P+SN E+ F+L I + K
Sbjct: 1 MKETPLSNCERRFLLRAIEEKK 22
>RGD|1307888 [details] [associations]
symbol:Exosc9 "exosome component 9" species:10116 "Rattus
norvegicus" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISO] [GO:0000178 "exosome (RNase complex)"
evidence=ISO;ISS] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO] [GO:0030307
"positive regulation of cell growth" evidence=IEA;ISO] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA;ISO] [GO:0071028
"nuclear mRNA surveillance" evidence=IEA;ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA;ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1307888
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0017091
GO:GO:0000178 GO:GO:0071035 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0006364 GO:GO:0043928 GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG2123 HOGENOM:HOG000229504
GeneTree:ENSGT00530000063093 HSSP:O29756 CTD:5393
HOVERGEN:HBG051523 KO:K03678 OrthoDB:EOG43TZVZ OMA:YRNIRIS
EMBL:BC097413 IPI:IPI00206563 RefSeq:NP_001020577.1
UniGene:Rn.13826 STRING:Q4QR75 Ensembl:ENSRNOT00000020662
GeneID:294975 KEGG:rno:294975 UCSC:RGD:1307888 InParanoid:Q4QR75
NextBio:638811 Genevestigator:Q4QR75 Uniprot:Q4QR75
Length = 437
Score = 469 (170.2 bits), Expect = 1.7e-50, Sum P(3) = 1.7e-50
Identities = 86/177 (48%), Positives = 122/177 (68%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ VL QVSC +V PK R EG+LF N ELS MA+P FE GRQ+D V +NR LE+C +
Sbjct: 53 TRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRN 112
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
SKCID ESLCVVA EKVW +RVDL++LN+DGN++ SIAA+ AL HFR PDV+ G+++
Sbjct: 113 SKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEV 172
Query: 574 IIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQK 630
+++ E+DP+P++I H P+ +S+A F G+ P E +D L ++ ++ +
Sbjct: 173 TLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHR 229
Score = 51 (23.0 bits), Expect = 1.7e-50, Sum P(3) = 1.7e-50
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1 MREFPVSNLEKSFVLSGILQNK 22
M+E P+SN E+ F+L I + K
Sbjct: 1 MKETPLSNCERRFLLRAIEEKK 22
Score = 46 (21.3 bits), Expect = 1.7e-50, Sum P(3) = 1.7e-50
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 712 EDEG--DEVMLVDSVNPRT-KVRE------EVVLSGDSEEEDTVML 748
E+EG DE +++D T +V + +VLS DSEEE+ ++L
Sbjct: 358 EEEGGIDETVILDDTKMDTGEVSDIGSQGAPIVLS-DSEEEEMIIL 402
>UNIPROTKB|Q06265 [details] [associations]
symbol:EXOSC9 "Exosome complex component RRP45"
species:9606 "Homo sapiens" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0006364
"rRNA processing" evidence=NAS] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IDA;NAS] [GO:0006955 "immune response"
evidence=NAS] [GO:0000178 "exosome (RNase complex)" evidence=IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IMP;TAS] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0030307
"positive regulation of cell growth" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005634 GO:GO:0030307
GO:GO:0006955 GO:GO:0005730 GO:GO:0017091 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AC079341 GO:GO:0006364
GO:GO:0000176 GO:GO:0000175 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123
HOGENOM:HOG000229504 CTD:5393 HOVERGEN:HBG051523 KO:K03678
OrthoDB:EOG43TZVZ EMBL:M58460 EMBL:U09215 EMBL:AJ505989
EMBL:AJ517294 IPI:IPI00029697 IPI:IPI00607722 IPI:IPI00654592
IPI:IPI00845426 PIR:G01425 RefSeq:NP_001029366.1 RefSeq:NP_005024.2
UniGene:Hs.91728 ProteinModelPortal:Q06265 SMR:Q06265 IntAct:Q06265
MINT:MINT-1036055 STRING:Q06265 PhosphoSite:Q06265 DMDM:147744559
PaxDb:Q06265 PRIDE:Q06265 Ensembl:ENST00000243498
Ensembl:ENST00000379663 GeneID:5393 KEGG:hsa:5393 UCSC:uc003idz.3
UCSC:uc003iea.3 GeneCards:GC04P122722 HGNC:HGNC:9137 HPA:HPA041838
MIM:606180 neXtProt:NX_Q06265 PharmGKB:PA33463 OMA:YRNIRIS
EvolutionaryTrace:Q06265 GenomeRNAi:5393 NextBio:20906
ArrayExpress:Q06265 Bgee:Q06265 CleanEx:HS_EXOSC9
Genevestigator:Q06265 GermOnline:ENSG00000123737 Uniprot:Q06265
Length = 439
Score = 472 (171.2 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 92/197 (46%), Positives = 133/197 (67%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ VL QVSC +V PK R EG+LF N ELS MA+P FE GRQ+D V +NR +E+C +
Sbjct: 53 TRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRN 112
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
SKCID ESLCVVA EKVW +RVDL++LN+DGN++ SIAA+ AL HFR PDV+ GD++
Sbjct: 113 SKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEV 172
Query: 574 IIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTAL--ALSQDRQKL 631
+++ E+DP+P++I H P+ +S+A F G+ P E +D L A+++ R+
Sbjct: 173 TLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREIC 232
Query: 632 GVDSAYANLVNKTDRIL 648
+ S+ ++ K D++L
Sbjct: 233 TIQSSGGIMLLK-DQVL 248
Score = 51 (23.0 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1 MREFPVSNLEKSFVLSGILQNK 22
M+E P+SN E+ F+L I + K
Sbjct: 1 MKETPLSNCERRFLLRAIEEKK 22
>MGI|MGI:1355319 [details] [associations]
symbol:Exosc9 "exosome component 9" species:10090 "Mus
musculus" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISO] [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO;TAS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=ISO] [GO:0030307 "positive regulation of
cell growth" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] [GO:0071028 "nuclear
mRNA surveillance" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 MGI:MGI:1355319 Pfam:PF01138
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0017091
GO:GO:0004527 GO:GO:0090305 GO:GO:0000178 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0043928
GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123
HOGENOM:HOG000229504 GeneTree:ENSGT00530000063093 CTD:5393
HOVERGEN:HBG051523 KO:K03678 OrthoDB:EOG43TZVZ OMA:YRNIRIS
EMBL:AF152841 EMBL:AF152842 EMBL:BC005622 EMBL:BC052156
EMBL:AK011636 IPI:IPI00119442 RefSeq:NP_062266.1 UniGene:Mm.116711
ProteinModelPortal:Q9JHI7 SMR:Q9JHI7 STRING:Q9JHI7
PhosphoSite:Q9JHI7 PaxDb:Q9JHI7 PRIDE:Q9JHI7
Ensembl:ENSMUST00000029269 GeneID:50911 KEGG:mmu:50911
UCSC:uc008ozm.1 InParanoid:Q9JHI7 NextBio:307895 Bgee:Q9JHI7
CleanEx:MM_EXOSC9 Genevestigator:Q9JHI7
GermOnline:ENSMUSG00000027714 Uniprot:Q9JHI7
Length = 438
Score = 470 (170.5 bits), Expect = 2.1e-47, Sum P(2) = 2.1e-47
Identities = 111/310 (35%), Positives = 174/310 (56%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ VL QVSC +V PK R EG+LF N ELS MA+P FE GRQ+D V +NR LE+C +
Sbjct: 53 TRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRN 112
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
SKCID ESLCVVA EKVW +RVDL++LN+DGN++ SIAA+ AL HFR PDV+ G+++
Sbjct: 113 SKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEV 172
Query: 574 IIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTAL--ALSQDRQKL 631
+++ E+DP+P++I H P+ +S+A F G+ P E +D L A+++ R+
Sbjct: 173 TLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREIC 232
Query: 632 GVDSAYANLVNKTDRILLDEGEKDSGETKVKVEKVGPGIADLISKSD-IEPSGIKNQWVX 690
+ S+ ++ K D++ K +G VKV ++ I + + G K +
Sbjct: 233 TIQSSGGIMLLK-DQVF--RCSKIAG---VKVAEITELIQKALENDQRVRKEGGKFGFAE 286
Query: 691 XXXXXXXXXXXXXXTP-RVQSVEDEGDEVMLVDSVNPRTKVREEVVLS-GDSEEEDTVML 748
P ++E+ +E+ + ++ P V + V+ + G ++ D +
Sbjct: 287 SIANQRITAFKMETAPIDTSNIEERAEEI-IAEAEPPPEVVSQPVLWTPGTAQIGDGIEN 345
Query: 749 T--DLTPAEK 756
+ DL +EK
Sbjct: 346 SWGDLEDSEK 355
Score = 51 (23.0 bits), Expect = 2.1e-47, Sum P(2) = 2.1e-47
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1 MREFPVSNLEKSFVLSGILQNK 22
M+E P+SN E+ F+L I + K
Sbjct: 1 MKETPLSNCERRFLLRAIEEKK 22
>UNIPROTKB|F1NJI1 [details] [associations]
symbol:EXOSC9 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0071035
"nuclear polyadenylation-dependent rRNA catabolic process"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005634 GO:GO:0005737 GO:GO:0030307 GO:GO:0017091
GO:GO:0000178 GO:GO:0071035 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0043928 GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 OMA:YRNIRIS EMBL:AADN02008699
EMBL:AADN02009245 EMBL:AADN02009246 IPI:IPI00579597
Ensembl:ENSGALT00000019390 ArrayExpress:F1NJI1 Uniprot:F1NJI1
Length = 387
Score = 465 (168.7 bits), Expect = 4.4e-46, Sum P(2) = 4.4e-46
Identities = 91/195 (46%), Positives = 131/195 (67%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
VL QVSC +V PK R EG+LF N ELSPMA+P FE GRQ++ V +NR +E+C + SK
Sbjct: 2 VLGQVSCELVPPKPNRATEGILFCNLELSPMAAPGFEPGRQSELLVKVNRLIERCLRNSK 61
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
CID ESLCVVA EKVW +RVDL++LN+DGN++ SIA + AL HFR PDV+ G ++ +
Sbjct: 62 CIDTESLCVVAGEKVWQIRVDLHLLNHDGNIVDAASIAGIVALCHFRRPDVSVQGKEVTV 121
Query: 576 HSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTAL--ALSQDRQKLGV 633
+S E+DP+P++I H P+ +S+A F G+ P E +D L A+++ R+ +
Sbjct: 122 YSPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTI 181
Query: 634 DSAYANLVNKTDRIL 648
S+ ++ K D++L
Sbjct: 182 QSSGGIMLLK-DQVL 195
Score = 44 (20.5 bits), Expect = 4.4e-46, Sum P(2) = 4.4e-46
Identities = 14/66 (21%), Positives = 26/66 (39%)
Query: 683 GIKNQWVXXXXXXXXXXXXXXXTPRVQSVEDEGDEVMLVDSVNPRTKVREEVVLSGDSEE 742
GI+N W + E + E +N + +++ ++ DSEE
Sbjct: 289 GIENAWGDLEESEREEAAEEEGESSTTAFECQRTETEDTSMMN---EAKDDPIVLSDSEE 345
Query: 743 EDTVML 748
E+ V+L
Sbjct: 346 EEVVIL 351
>ZFIN|ZDB-GENE-080204-49 [details] [associations]
symbol:zgc:172139 "zgc:172139" species:7955 "Danio
rerio" [GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] ZFIN:ZDB-GENE-080204-49 eggNOG:NOG297008
OrthoDB:EOG4DJJWJ InterPro:IPR019141 Pfam:PF09741 EMBL:BC154550
IPI:IPI00861005 RefSeq:NP_001121760.2 UniGene:Dr.154575
UniGene:Dr.162502 GeneID:100003412 KEGG:dre:100003412
HOGENOM:HOG000199962 HOVERGEN:HBG100175 NextBio:20785824
Uniprot:A8WG22
Length = 208
Score = 437 (158.9 bits), Expect = 1.5e-40, P = 1.5e-40
Identities = 82/167 (49%), Positives = 119/167 (71%)
Query: 74 YWTDLFVRYFLFQTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVFRKDSRKLP-IG 132
+WT +F YF+ + D D+LF+VR+K S N + EVEV+R+DS+KLP +G
Sbjct: 31 FWTWMFSTYFMEKWAPRQD--DMLFYVRRKLSYVSEDNTEGKKVEVEVYRRDSKKLPGLG 88
Query: 133 DPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVYASPSRRRMDTKGE 192
DPD+DWEE+VYLN+I+ + DY +T A+CTR+ + + K+ SQ+V+ASPS+ MD+KGE
Sbjct: 89 DPDIDWEESVYLNLILQKLDYVVTCAVCTRSDAGDIHIHKKKSQQVFASPSKHPMDSKGE 148
Query: 193 VEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSV 239
+M+YP + F +DNF EVF D+ V +GEMVCVELVASD++ + + V
Sbjct: 149 ESKMSYPNIFFMIDNFEEVFSDMTVGEGEMVCVELVASDKSNTFQGV 195
>POMBASE|SPCC757.08 [details] [associations]
symbol:SPCC757.08 "exosome subunit Rrp45 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR001247 PomBase:SPCC757.08 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 GO:GO:0071035 GO:GO:0071038
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 Pfam:PF03725 eggNOG:COG2123
HOGENOM:HOG000229504 KO:K03678 PIR:T41599 RefSeq:NP_587683.1
ProteinModelPortal:O74918 STRING:O74918 EnsemblFungi:SPCC757.08.1
GeneID:2539106 KEGG:spo:SPCC757.08 OMA:LIDASCI OrthoDB:EOG4X0R2H
NextBio:20800278 Uniprot:O74918
Length = 291
Score = 355 (130.0 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 57/150 (38%), Positives = 100/150 (66%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ V+A+++ + P RP +G+ I EL+P+A FE GR +D ++I+R +EK +
Sbjct: 54 TRVMARITTEITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRR 113
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
S +D ESLC+++ +K W+VR ++ +N+DGNL+ IA +AAL HFR P++T G+++
Sbjct: 114 SNALDTESLCIISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGEEV 173
Query: 574 IIHSAAEKDPIPMTILHYPVTISYAVFNGG 603
+H E+ P+P++ILH P+ ++++ FN G
Sbjct: 174 TVHPVEERVPVPLSILHMPICVTFSFFNNG 203
Score = 40 (19.1 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 2 REFPVSNLEKSFVLSGILQNKVKKIIVNIGED 33
+EF +++LEK L G + + + + G++
Sbjct: 12 KEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKE 43
>WB|WBGene00018154 [details] [associations]
symbol:exos-9 species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0000003 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:FO081316
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123
GeneTree:ENSGT00530000063093 KO:K12586 PIR:T28842
RefSeq:NP_741217.1 ProteinModelPortal:Q20128 SMR:Q20128
STRING:Q20128 PaxDb:Q20128 PRIDE:Q20128 EnsemblMetazoa:F37C12.13a.1
EnsemblMetazoa:F37C12.13a.2 EnsemblMetazoa:F37C12.13a.3
GeneID:176012 KEGG:cel:CELE_F37C12.13 UCSC:F37C12.13a.2 CTD:176012
WormBase:F37C12.13a HOGENOM:HOG000020941 InParanoid:Q20128
OMA:LESLCVA NextBio:890730 ArrayExpress:Q20128 Uniprot:Q20128
Length = 434
Score = 341 (125.1 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 83/263 (31%), Positives = 142/263 (53%)
Query: 428 DFMSSENWTSIS----AENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAEL 483
DF S E + + AE G A+ C + ++V+A VS + P + RP++G++ I+ +L
Sbjct: 25 DFRSLEEFRDVKLVVGAEVGTAI-CT-IGNTKVMAAVSAEIAEPSSMRPHKGVINIDVDL 82
Query: 484 SPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYD 543
SPMA+ E R + + R LE ++S+CID+E+LC+ A +++W +RVD+ +L+ D
Sbjct: 83 SPMANYANEHDRLGSKGMELIRLLELIIRDSRCIDVEALCIRAGKEIWKIRVDVRILDED 142
Query: 544 GNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGG 603
G+LL C +AA+ AL HFR P+VT +I+S EK P+P+ I H P+ + + + G
Sbjct: 143 GSLLDCACLAAITALQHFRRPNVTLEPHHTLIYSEYEKAPVPLNIYHMPICTTIGLLDKG 202
Query: 604 SEGSTVPGFTECIQLDTALALS-QDRQKLGVDSAYANLVNKTDRILLDEGEKDSGETKVK 662
P E LD ++ ++ R+++ NL+ T +I E+ +
Sbjct: 203 QIVVIDPTDKETACLDGSIVVACNKRREVCALHQSTNLILSTKQI-----ERCVKLAMAR 257
Query: 663 VEKVGPGIADLISKSDIEPSGIK 685
E + ++D+I + IE S K
Sbjct: 258 AEALTAVVSDVIKQDQIERSAFK 280
Score = 41 (19.5 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 1 MREFPVSNLEKSFVLSGI 18
MR PV+N EK+ +L +
Sbjct: 1 MRVQPVTNCEKAVILEAL 18
>TAIR|locus:2103316 [details] [associations]
symbol:CER7 "AT3G60500" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA
processing" evidence=IEA;ISS] [GO:0010025 "wax biosynthetic
process" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL138646
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 Pfam:PF03725
SUPFAM:SSF55666 HOGENOM:HOG000229504 KO:K03678 EMBL:BT004196
EMBL:BT005701 EMBL:DQ869270 IPI:IPI00517590 PIR:T47861
RefSeq:NP_001190143.1 RefSeq:NP_191609.1 RefSeq:NP_974466.1
UniGene:At.34436 ProteinModelPortal:Q9M209 SMR:Q9M209 IntAct:Q9M209
STRING:Q9M209 PRIDE:Q9M209 EnsemblPlants:AT3G60500.1
EnsemblPlants:AT3G60500.2 EnsemblPlants:AT3G60500.3 GeneID:825221
KEGG:ath:AT3G60500 TAIR:At3g60500 InParanoid:Q9M209 OMA:KEAACLD
PhylomeDB:Q9M209 ProtClustDB:CLSN2685053 Genevestigator:Q9M209
Uniprot:Q9M209
Length = 438
Score = 351 (128.6 bits), Expect = 3.6e-31, P = 3.6e-31
Identities = 69/164 (42%), Positives = 103/164 (62%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ V+ V+ +V P RPNEG L I E SPMA P FE GR +++V + R +++ +E
Sbjct: 58 THVMGFVTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRE 117
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVT---STG 570
S+ +D ESLCV+A + VW+VR+DL++L+ GNL+ +IAALAAL FR PD T G
Sbjct: 118 SRAVDTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENG 177
Query: 571 DQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTE 614
++IIH E++P+P+ I H P+ ++ FN G+ P + E
Sbjct: 178 QEVIIHPLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVE 221
>FB|FBgn0030789 [details] [associations]
symbol:Rrp45 "Rrp45" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0000176
"nuclear exosome (RNase complex)" evidence=ISS] [GO:0000178
"exosome (RNase complex)" evidence=ISS] InterPro:IPR001247
Pfam:PF01138 EMBL:AE014298 GO:GO:0016787 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG2123
GeneTree:ENSGT00530000063093 KO:K03678 OMA:LESLCVA EMBL:AY089277
RefSeq:NP_573163.1 UniGene:Dm.19725 SMR:Q8T4A9 IntAct:Q8T4A9
STRING:Q8T4A9 EnsemblMetazoa:FBtr0074355 GeneID:32665
KEGG:dme:Dmel_CG9606 UCSC:CG9606-RA CTD:32665 FlyBase:FBgn0030789
InParanoid:Q8T4A9 OrthoDB:EOG495X81 GenomeRNAi:32665 NextBio:779732
Uniprot:Q8T4A9
Length = 412
Score = 349 (127.9 bits), Expect = 5.8e-31, P = 5.8e-31
Identities = 76/209 (36%), Positives = 116/209 (55%)
Query: 417 ESKRAQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGL 476
+ +R+ + DV+ ++W S++ G+ ++VLAQV+C M P +RPNEG
Sbjct: 31 DGRRSNESRDVELTFGKDWGSVAVSMGD---------TKVLAQVTCEMGPPALSRPNEGK 81
Query: 477 LFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVD 536
+ +N L +A S+ +N LE+ F+ S+ IDLESLCV E+ VW +RV+
Sbjct: 82 IHLNVYLGGVAFLDEAHTTHDQRSLKLNSLLERTFRSSRSIDLESLCVAVEKHVWCIRVN 141
Query: 537 LNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTIS 596
+NVLN+DGNL +IA LAAL HFR PDV ++ I E++ IP+ HYPV+++
Sbjct: 142 VNVLNHDGNLYDASTIATLAALMHFRRPDVWYKDGELRIFKKKEREFIPLLFHHYPVSVT 201
Query: 597 YAVFNGGSEGSTVPGFTECIQLDTALALS 625
Y V+ + P E D+ + LS
Sbjct: 202 YCVYKSSVQPILDPTLLEENAADSVIVLS 230
>SGD|S000002688 [details] [associations]
symbol:RRP45 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071038
"nuclear polyadenylation-dependent tRNA catabolic process"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IC] [GO:0034473 "U1 snRNA 3'-end processing"
evidence=IGI;IMP] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay" evidence=IC]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IGI;IMP] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IGI;IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IC]
[GO:0034427 "nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'" evidence=IC] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IC] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR001247
SGD:S000002688 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005730
EMBL:BK006938 GO:GO:0003723 GO:GO:0071035 GO:GO:0071038 EMBL:U51030
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000177
GO:GO:0000467 GO:GO:0070651 GO:GO:0071042 GO:GO:0070478
GO:GO:0070481 GO:GO:0071051 Pfam:PF03725 eggNOG:COG2123
HOGENOM:HOG000229504 GeneTree:ENSGT00530000063093 KO:K03678
GO:GO:0034475 GO:GO:0034476 GO:GO:0034473 PDB:2WP8 PDBsum:2WP8
OMA:LIDASCI OrthoDB:EOG4X0R2H EMBL:AY557748 PIR:S70136
RefSeq:NP_010566.1 ProteinModelPortal:Q05636 SMR:Q05636
DIP:DIP-2084N IntAct:Q05636 MINT:MINT-555570 STRING:Q05636
PaxDb:Q05636 PeptideAtlas:Q05636 EnsemblFungi:YDR280W GeneID:851874
KEGG:sce:YDR280W CYGD:YDR280w EvolutionaryTrace:Q05636
NextBio:969829 Genevestigator:Q05636 GermOnline:YDR280W
Uniprot:Q05636
Length = 305
Score = 345 (126.5 bits), Expect = 1.6e-30, P = 1.6e-30
Identities = 64/161 (39%), Positives = 98/161 (60%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQT-DTSVMINRFLEKCFK 512
++V ++SC + P RP EGL I+ E+SPMA QFE G T + V+ +R +EK +
Sbjct: 54 TKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVR 113
Query: 513 ESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQ 572
S +D+E LC+VA K W VR D++ L+ DG + IA +A L HF+ PD+T G+Q
Sbjct: 114 RSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQ 173
Query: 573 IIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFT 613
II+H E++P+P+ ILH P+ ++++ FN + G T
Sbjct: 174 IIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGET 214
>TAIR|locus:2089215 [details] [associations]
symbol:RRP45a "AT3G12990" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA
processing" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0010025 "wax biosynthetic process" evidence=IGI]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GO:GO:0010025 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG2123 KO:K03678 EMBL:AB026645 EMBL:BT003077 EMBL:AK227231
IPI:IPI00533330 RefSeq:NP_001030684.1 RefSeq:NP_001189874.1
RefSeq:NP_566441.1 UniGene:At.11988 ProteinModelPortal:Q9LDM2
SMR:Q9LDM2 STRING:Q9LDM2 PRIDE:Q9LDM2 DNASU:820485
EnsemblPlants:AT3G12990.1 EnsemblPlants:AT3G12990.2
EnsemblPlants:AT3G12990.3 GeneID:820485 KEGG:ath:AT3G12990
TAIR:At3g12990 InParanoid:Q9LDM2 OMA:HEFRDIS PhylomeDB:Q9LDM2
ProtClustDB:CLSN2688326 Genevestigator:Q9LDM2 Uniprot:Q9LDM2
Length = 307
Score = 344 (126.2 bits), Expect = 2.0e-30, P = 2.0e-30
Identities = 66/154 (42%), Positives = 99/154 (64%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ V+A V+ +V P RP+EG I E SPMA P FE G +++V + R +++ +E
Sbjct: 58 THVMAFVTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRE 117
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQ- 572
S+ +D ESLCV+A + VW+VR+DL++L+ GNL+ ++AALAAL FR PD T GD
Sbjct: 118 SRAVDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNS 177
Query: 573 --IIIHSAAEKDPIPMTILHYPVTISYAVFNGGS 604
+IIH E++P+P+ I H P+ ++ FN GS
Sbjct: 178 QDVIIHPPEEREPLPLIIHHLPIAFTFGFFNKGS 211
>ASPGD|ASPL0000004691 [details] [associations]
symbol:AN6111 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 EMBL:BN001301 EMBL:AACD01000104
GO:GO:0004519 InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725
eggNOG:COG2123 HOGENOM:HOG000229504 KO:K03678 OMA:LIDASCI
OrthoDB:EOG4X0R2H RefSeq:XP_663715.1 ProteinModelPortal:Q5B019
STRING:Q5B019 EnsemblFungi:CADANIAT00006901 GeneID:2871127
KEGG:ani:AN6111.2 Uniprot:Q5B019
Length = 295
Score = 285 (105.4 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 49/150 (32%), Positives = 84/150 (56%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ ++ ++S + P RP +G+ I EL+ M SP +E GRQ D + L++ +
Sbjct: 54 TSLVVRISAEVAKPHDDRPFDGIFNIAMELTAMGSPAWENGRQGDLETYVTNVLDRVIRH 113
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
S +D ESLC++ W +R D+++ +YDGNL+ I +A L HFR PD Q+
Sbjct: 114 SNALDTESLCILKGVSCWTIRADVHITDYDGNLIDASCIGVMAGLQHFRRPDAVVKDGQV 173
Query: 574 IIHSAAEKDPIPMTILHYPVTISYAVFNGG 603
I++ E+ P P+ I H P+++++ F+ G
Sbjct: 174 IVYGLDERVPAPLNITHKPLSVTFHTFDDG 203
Score = 38 (18.4 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 12/55 (21%), Positives = 27/55 (49%)
Query: 2 REFPVSNLEKSFVLSGILQNKVKKIIVNIGEDESILKSTTTLEQLLEEINFQRAK 56
R+F + L + L G ++++ + ++ GE+ +K L+ I+ + AK
Sbjct: 12 RDFILDALREGVRLDGRGADQLRPLTLSFGEEYGHVKVQLGKTSLVVRISAEVAK 66
>CGD|CAL0004911 [details] [associations]
symbol:orf19.4078 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0071035
"nuclear polyadenylation-dependent rRNA catabolic process"
evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IEA]
InterPro:IPR001247 CGD:CAL0004911 InterPro:IPR015847 Pfam:PF01138
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AACQ01000107
EMBL:AACQ01000110 Pfam:PF03725 eggNOG:COG2123 HOGENOM:HOG000229504
KO:K03678 RefSeq:XP_714111.1 RefSeq:XP_714249.1
ProteinModelPortal:Q59X53 STRING:Q59X53 GeneID:3644090
GeneID:3644245 KEGG:cal:CaO19.11559 KEGG:cal:CaO19.4078
Uniprot:Q59X53
Length = 337
Score = 259 (96.2 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 62/172 (36%), Positives = 95/172 (55%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFE--TGRQTDTSV----MINRFL 507
++V+ ++ + P RP EG++ IN E+ Q T D +INR L
Sbjct: 60 TKVMVNITSRITEPYQDRPFEGIMTINCEIPNHIKLQSNDTTNNNNDNEDEFINLINRAL 119
Query: 508 EKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVT 567
++ + S +DLE+LC++A EKVW + +DL VLNYDGNL+ +A + AL F+ PDVT
Sbjct: 120 DRAIRRSNAVDLENLCIIAGEKVWELIIDLQVLNYDGNLIDSGCLAIITALLDFKKPDVT 179
Query: 568 ----------ST---GDQIIIHSAAEKDP-IPMTILHYPVTISYAVFNGGSE 605
ST G II+H K P I ++ILH P+ +++++FN GS+
Sbjct: 180 INNNNTSNSSSTSGGGGNIIVHDDEMKRPFIELSILHIPICLTFSLFNLGSK 231
>UNIPROTKB|Q96B26 [details] [associations]
symbol:EXOSC8 "Exosome complex component RRP43"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0000178 "exosome (RNase
complex)" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0004532 "exoribonuclease activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005829
GO:GO:0005634 GO:GO:0010467 GO:GO:0005730 EMBL:CH471075
GO:GO:0017091 GO:GO:0000178 EMBL:AL138706 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123 HOGENOM:HOG000229504
CTD:11340 HOVERGEN:HBG051522 KO:K12586 OMA:QAASQFI
OrthoDB:EOG47M1ZJ EMBL:BC020773 EMBL:AF025438 IPI:IPI00552920
RefSeq:NP_852480.1 UniGene:Hs.294041 ProteinModelPortal:Q96B26
SMR:Q96B26 IntAct:Q96B26 STRING:Q96B26 PhosphoSite:Q96B26
DMDM:21759409 SWISS-2DPAGE:Q96B26 PaxDb:Q96B26 PeptideAtlas:Q96B26
PRIDE:Q96B26 DNASU:11340 Ensembl:ENST00000389704 GeneID:11340
KEGG:hsa:11340 UCSC:uc001uwa.3 GeneCards:GC13P037572
HGNC:HGNC:17035 MIM:606019 neXtProt:NX_Q96B26 PharmGKB:PA134922251
InParanoid:Q96B26 EvolutionaryTrace:Q96B26 GenomeRNAi:11340
NextBio:43089 ArrayExpress:Q96B26 Bgee:Q96B26 CleanEx:HS_EXOSC8
Genevestigator:Q96B26 GermOnline:ENSG00000120699 Uniprot:Q96B26
Length = 276
Score = 209 (78.6 bits), Expect = 7.0e-16, P = 7.0e-16
Identities = 57/191 (29%), Positives = 96/191 (50%)
Query: 414 FWKESKRAQDWTDVDFMSSE-NWTSISAENGEAVWCPWVK--PSEVLAQVSCNMVIPKAT 470
F KE+ R +F ++ N SIS +G A+ VK + V+ V P
Sbjct: 17 FLKENCRPDGRELGEFRTTTVNIGSISTADGSAL----VKLGNTTVICGVKAEFAAPSTD 72
Query: 471 RPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKV 530
P++G + N +L P+ S +F +G + + + ++F+ + S+ I E LC+ + V
Sbjct: 73 APDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLV 132
Query: 531 WNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILH 590
W + DL L+YDGN+L C+ A LAAL + + P+VT + + +K + I
Sbjct: 133 WVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSY-LNIRT 191
Query: 591 YPVTISYAVFN 601
+PV S+AVF+
Sbjct: 192 HPVATSFAVFD 202
>UNIPROTKB|Q2KHU3 [details] [associations]
symbol:EXOSC8 "Exosome complex component RRP43"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG2123 HOGENOM:HOG000229504 GeneTree:ENSGT00530000063093
EMBL:BC112881 IPI:IPI00692861 RefSeq:NP_001073074.1
UniGene:Bt.55156 ProteinModelPortal:Q2KHU3 SMR:Q2KHU3 STRING:Q2KHU3
Ensembl:ENSBTAT00000015733 GeneID:532080 KEGG:bta:532080 CTD:11340
HOVERGEN:HBG051522 InParanoid:Q2KHU3 KO:K12586 OMA:QAASQFI
OrthoDB:EOG47M1ZJ NextBio:20875602 Uniprot:Q2KHU3
Length = 276
Score = 203 (76.5 bits), Expect = 3.1e-15, P = 3.1e-15
Identities = 55/191 (28%), Positives = 96/191 (50%)
Query: 414 FWKESKRAQDWTDVDFMSSE-NWTSISAENGEAVWCPWVK--PSEVLAQVSCNMVIPKAT 470
F KE+ R +F ++ N SI +G A+ VK + V+ + P
Sbjct: 17 FLKENCRPDGRELGEFRTTTVNVGSIGTADGSAL----VKLGNTTVICGIKAEFGAPPTD 72
Query: 471 RPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKV 530
P++G + N +LSP+ S +F +G + + + ++F+ + S+ I E LC+ + +
Sbjct: 73 APDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISSGKLA 132
Query: 531 WNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILH 590
W + DL LN+DGN+L C+ A LAAL + + P+VT + + +K + I
Sbjct: 133 WVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSC-LNIRT 191
Query: 591 YPVTISYAVFN 601
+PV S+AVF+
Sbjct: 192 HPVATSFAVFD 202
>RGD|1306169 [details] [associations]
symbol:Exosc8 "exosome component 8" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1306169
InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 OMA:QAASQFI OrthoDB:EOG47M1ZJ
EMBL:CH474003 IPI:IPI00372206 UniGene:Rn.93933
Ensembl:ENSRNOT00000017993 UCSC:RGD:1306169 Uniprot:D4AE98
Length = 276
Score = 201 (75.8 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 56/191 (29%), Positives = 93/191 (48%)
Query: 414 FWKESKRAQDWTDVDFMSSE-NWTSISAENGEAVWCPWVK--PSEVLAQVSCNMVIPKAT 470
F KE+ R +F ++ N SIS +G A+ VK + V+ V P
Sbjct: 17 FLKENCRPDGRELGEFRTTTVNIGSISTADGSAL----VKLGNTTVICGVKAEFAAPPVD 72
Query: 471 RPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKV 530
P+ G + N +L P+ S +F TG + + + ++F+ + S+ I E LC+ +
Sbjct: 73 APDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVIENSQIIKKEDLCISPGKLA 132
Query: 531 WNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILH 590
W + DL L+YDGN+L C+ A LAAL + + P+VT + + +K + +
Sbjct: 133 WVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSY-LNVRA 191
Query: 591 YPVTISYAVFN 601
PV S+AVF+
Sbjct: 192 NPVATSFAVFD 202
>UNIPROTKB|Q95Z11 [details] [associations]
symbol:RRP45 "Rrp45p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725 EMBL:AJ308999
ProteinModelPortal:Q95Z11 IntAct:Q95Z11 STRING:Q95Z11
Uniprot:Q95Z11
Length = 363
Score = 210 (79.0 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 49/193 (25%), Positives = 92/193 (47%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
S V A ++ +V P RP GLL + + + + T + FLE+ +
Sbjct: 63 SVVTAAIATALVEPTPQRPKHGLLHFSVRR--LHTEKDSPAADGSTQKNLVAFLERLVRT 120
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
ID LCV+ +KVW++ V++ ++N +GN A +A L H R P++T G +
Sbjct: 121 GGVIDTAGLCVLPGQKVWSLTVNVTIMNDEGNCNDAAVWAVIALLMHHRRPELTVRGSSV 180
Query: 574 IIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQKLG- 632
I+H E++P+P+++ H P+ ++A+ +E + + + Q +G
Sbjct: 181 IVHPPHEREPVPLSVQHTPLPFTFAITMAPTEREKALNHQRALSATGSSSGPQPSSGVGN 240
Query: 633 -VDSAYANLVNKT 644
+D+A A ++ T
Sbjct: 241 SIDTASAFAIDGT 253
>MGI|MGI:1916889 [details] [associations]
symbol:Exosc8 "exosome component 8" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 MGI:MGI:1916889 Pfam:PF01138
GO:GO:0005737 GO:GO:0005730 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG2123 GeneTree:ENSGT00530000063093
CTD:11340 HOVERGEN:HBG051522 KO:K12586 OMA:QAASQFI
OrthoDB:EOG47M1ZJ EMBL:AK009584 IPI:IPI00109639 RefSeq:NP_081424.3
UniGene:Mm.29253 ProteinModelPortal:Q9D753 SMR:Q9D753 STRING:Q9D753
PhosphoSite:Q9D753 PaxDb:Q9D753 PRIDE:Q9D753
Ensembl:ENSMUST00000029316 GeneID:69639 KEGG:mmu:69639
InParanoid:Q9D753 NextBio:329962 Bgee:Q9D753 CleanEx:MM_EXOSC8
Genevestigator:Q9D753 GermOnline:ENSMUSG00000027752 Uniprot:Q9D753
Length = 276
Score = 198 (74.8 bits), Expect = 7.4e-14, P = 7.4e-14
Identities = 56/191 (29%), Positives = 92/191 (48%)
Query: 414 FWKESKRAQDWTDVDFMSSE-NWTSISAENGEAVWCPWVK--PSEVLAQVSCNMVIPKAT 470
F KE+ R +F ++ N SIS +G A+ VK + V+ V P
Sbjct: 17 FLKENCRPDGRELGEFRATTVNIGSISTADGSAL----VKLGNTTVICGVKAEFAAPPVD 72
Query: 471 RPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKV 530
P+ G + N +L P+ S +F TG + + + ++F+ S+ I E LC+ +
Sbjct: 73 APDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPGKLA 132
Query: 531 WNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILH 590
W + DL L+YDGN+L C+ A LAAL + + P+VT + + +K + +
Sbjct: 133 WVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSY-LNVRT 191
Query: 591 YPVTISYAVFN 601
PV S+AVF+
Sbjct: 192 NPVATSFAVFD 202
>UNIPROTKB|E2R7U8 [details] [associations]
symbol:EXOSC8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005634 GO:GO:0005737 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 CTD:11340 KO:K12586 EMBL:AAEX03014203
RefSeq:XP_534492.2 Ensembl:ENSCAFT00000009898 GeneID:477300
KEGG:cfa:477300 NextBio:20852818 Uniprot:E2R7U8
Length = 276
Score = 195 (73.7 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 54/191 (28%), Positives = 95/191 (49%)
Query: 414 FWKESKRAQDWTDVDFMSSE-NWTSISAENGEAVWCPWVK--PSEVLAQVSCNMVIPKAT 470
F KE+ R +F ++ N SIS +G A+ VK + V+ + P
Sbjct: 17 FLKENCRPDGRELGEFRTTTVNIGSISTADGSAL----VKLGNTTVICGIKAEFAAPPTD 72
Query: 471 RPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKV 530
P++G + N +L P+ S +F +G + + + ++F+ + S+ I E LC+ +
Sbjct: 73 APDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLS 132
Query: 531 WNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILH 590
W + D+ L+YDGN+L C+ A LAAL + + P+VT + + +K + I
Sbjct: 133 WVLYCDIICLDYDGNILDACTFALLAALKNAQLPEVTINEETGLAEVNLKKKSY-LNIRT 191
Query: 591 YPVTISYAVFN 601
+PV S+AVF+
Sbjct: 192 HPVATSFAVFD 202
>TAIR|locus:2202902 [details] [associations]
symbol:CW7 "AT1G59520" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 InterPro:IPR019141 Pfam:PF09741
EMBL:JN389445 IPI:IPI00537641 RefSeq:NP_849828.1 UniGene:At.26672
PRIDE:F4ICZ7 DNASU:842242 EnsemblPlants:AT1G59520.3 GeneID:842242
KEGG:ath:AT1G59520 PhylomeDB:F4ICZ7 Uniprot:F4ICZ7
Length = 388
Score = 199 (75.1 bits), Expect = 9.8e-13, P = 9.8e-13
Identities = 80/263 (30%), Positives = 130/263 (49%)
Query: 72 TSYWTDLFVRYFLFQTDSNI-DCDDLLFFVRKKYIKTSSRNLPKFETEVEVF--RKDSRK 128
+++W +F YF+ +S DDLLFFVRK + S L + E + R+ + K
Sbjct: 42 SNFWHGVFDVYFVRCMESRRRQDDDLLFFVRK--LSCKSYGLTENEDAPAPYFVRRWAPK 99
Query: 129 LP--IGDP--DVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLK--------RHSQ 176
L +G+ +VDW ++ YLNMI H +T+T+AIC+ + K Q K + +
Sbjct: 100 LDELLGESLAEVDWRKSFYLNMIAHT-SFTVTVAICSNEALKTYQGSKDTKLSPIYKVVK 158
Query: 177 KVYASPSRRR--MDTKGEVEEM-TYPCVCFTVDNFNEVFHDILVRDGE-MVCVELVASDR 232
VYASPSR +D+K +E YP +CF VD+F+ F +++ D + CV L + D
Sbjct: 159 TVYASPSRVNFHLDSKKAMETTPAYPEICFAVDDFDSTFDAVVLTDKDHCYCVLLNSHDG 218
Query: 233 AGSVKSVIFLGS-IRYDALKR-VYDARTSVSNKFTQ-----------RMSFG-IFS-NNS 277
A + + S +A R V D + ++ + F R FG + S +
Sbjct: 219 AAFPSATVKDSSDSNTNADPRTVKDPKVTLFSGFVSYQMVREAYEGGRNRFGSLLSLGHI 278
Query: 278 NSRIEFVKMKGPQGKGFAEMAVT 300
+ + + M+GP G+G E+AV+
Sbjct: 279 TGKADRLYMRGPGGRGEVEVAVS 301
>GENEDB_PFALCIPARUM|PF13_0340 [details] [associations]
symbol:PF13_0340 "exosome complex exonuclease,
putative" species:5833 "Plasmodium falciparum" [GO:0000178 "exosome
(RNase complex)" evidence=ISS] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AL844509 Pfam:PF03725
SUPFAM:SSF55666 RefSeq:XP_001350356.1 ProteinModelPortal:Q8ID62
EnsemblProtists:PF13_0340:mRNA GeneID:814299 KEGG:pfa:PF13_0340
EuPathDB:PlasmoDB:PF3D7_1364500 HOGENOM:HOG000281747 KO:K01149
OMA:RESIHEN ProtClustDB:CLSZ2433147 Uniprot:Q8ID62
Length = 477
Score = 201 (75.8 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 48/189 (25%), Positives = 91/189 (48%)
Query: 413 HFWKESKRAQDWTDVDFMSSEN-WTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATR 471
HFWK K+ F S N + + G + ++V+ +++ +V P +
Sbjct: 10 HFWKNIKKNIRLDGRTFEDSRNVCINFLKDYGHVEIS--IGFTKVICKITSEIVKPHDRK 67
Query: 472 PNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVW 531
EG+L IN ++ + +D + I +++ K S I+ ESLC++ +KVW
Sbjct: 68 LKEGILKINLDIDNFIEDNENSDNMSDECLEIKNIIDRVLKTSNIINFESLCIIPGKKVW 127
Query: 532 NVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHY 591
+ +++ V+ DGNL C ++A L HF++ V + II E + P++IL+
Sbjct: 128 CICINIMVIENDGNLTDACYLSAYCGLVHFKNHQVRVIKNGDIIIDKEEINYSPLSILNS 187
Query: 592 PVTISYAVF 600
P+ ++A +
Sbjct: 188 PIVTTFAYY 196
>UNIPROTKB|Q8ID62 [details] [associations]
symbol:PF13_0340 "Exosome complex exonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000178 "exosome
(RNase complex)" evidence=ISS] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AL844509 Pfam:PF03725
SUPFAM:SSF55666 RefSeq:XP_001350356.1 ProteinModelPortal:Q8ID62
EnsemblProtists:PF13_0340:mRNA GeneID:814299 KEGG:pfa:PF13_0340
EuPathDB:PlasmoDB:PF3D7_1364500 HOGENOM:HOG000281747 KO:K01149
OMA:RESIHEN ProtClustDB:CLSZ2433147 Uniprot:Q8ID62
Length = 477
Score = 201 (75.8 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 48/189 (25%), Positives = 91/189 (48%)
Query: 413 HFWKESKRAQDWTDVDFMSSEN-WTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATR 471
HFWK K+ F S N + + G + ++V+ +++ +V P +
Sbjct: 10 HFWKNIKKNIRLDGRTFEDSRNVCINFLKDYGHVEIS--IGFTKVICKITSEIVKPHDRK 67
Query: 472 PNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVW 531
EG+L IN ++ + +D + I +++ K S I+ ESLC++ +KVW
Sbjct: 68 LKEGILKINLDIDNFIEDNENSDNMSDECLEIKNIIDRVLKTSNIINFESLCIIPGKKVW 127
Query: 532 NVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHY 591
+ +++ V+ DGNL C ++A L HF++ V + II E + P++IL+
Sbjct: 128 CICINIMVIENDGNLTDACYLSAYCGLVHFKNHQVRVIKNGDIIIDKEEINYSPLSILNS 187
Query: 592 PVTISYAVF 600
P+ ++A +
Sbjct: 188 PIVTTFAYY 196
>UNIPROTKB|E1BUV1 [details] [associations]
symbol:LOC100858560 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634
GO:GO:0005737 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 OMA:QAASQFI EMBL:AADN02005299
IPI:IPI00580554 Ensembl:ENSGALT00000027544 Uniprot:E1BUV1
Length = 277
Score = 185 (70.2 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 53/191 (27%), Positives = 92/191 (48%)
Query: 414 FWKESKRAQDWTDVDFMSSE-NWTSISAENGEAVWCPWVK--PSEVLAQVSCNMVIPKAT 470
F KE+ R +F ++ N SI+ +G A+ VK + V+ V + P
Sbjct: 17 FLKENCRPDGRELGEFRATTVNIGSITTADGSAL----VKLGNTTVICGVKAELAAPALD 72
Query: 471 RPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKV 530
N+G + N EL + S +F +G + + ++F+ + S+ I E LC+ +
Sbjct: 73 SANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADVIENSQVIAKEDLCIADGKLA 132
Query: 531 WNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILH 590
W + D+ L+YDGN+L + A LAAL + + P VT ++ + K P+ I
Sbjct: 133 WVLYCDIICLDYDGNILDASTFALLAALKNVQLPSVT-INEETGLSEVNLKQKNPLVIRK 191
Query: 591 YPVTISYAVFN 601
+PV S+A+F+
Sbjct: 192 HPVATSFAIFD 202
>TAIR|locus:2202705 [details] [associations]
symbol:AT1G60080 "AT1G60080" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0042991
"transcription factor import into nucleus" evidence=RCA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AC005966 SUPFAM:SSF55666 eggNOG:COG2123
HOGENOM:HOG000229504 KO:K12586 OMA:ECINRAT EMBL:BT004614
EMBL:AK227971 IPI:IPI00541560 PIR:D96625 RefSeq:NP_176216.1
UniGene:At.36723 ProteinModelPortal:Q9ZUI4 SMR:Q9ZUI4 IntAct:Q9ZUI4
STRING:Q9ZUI4 PaxDb:Q9ZUI4 PRIDE:Q9ZUI4 EnsemblPlants:AT1G60080.1
GeneID:842303 KEGG:ath:AT1G60080 TAIR:At1g60080 InParanoid:Q9ZUI4
PhylomeDB:Q9ZUI4 ProtClustDB:CLSN2679723 Genevestigator:Q9ZUI4
Uniprot:Q9ZUI4
Length = 302
Score = 173 (66.0 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 52/198 (26%), Positives = 93/198 (46%)
Query: 387 AGDMRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSE--NWTSISAENGE 444
A D+ E++ A+ ++ +R F + H ES R D + N +S +G
Sbjct: 7 AQDLSTEMEVDAFRRIFPLRFFER--HL-SESLRP-DGRQLGKARDTIVNLGLVSTADGS 62
Query: 445 AVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMIN 504
A+ + + +LA + ++ P P+EG + I + P+ SP GR + + +I+
Sbjct: 63 AL--AKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVIS 120
Query: 505 RFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHP 564
+ L S IDL+ LC+V+ + W +D+ L+ DG L +AA+AA ++ + P
Sbjct: 121 KRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIP 180
Query: 565 DVTSTGDQIIIHSAAEKD 582
V + I+ EKD
Sbjct: 181 IVALNDNGRIVAVTGEKD 198
>RGD|1309758 [details] [associations]
symbol:Exosc7 "exosome component 7" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1309758
InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725 eggNOG:COG2123
KO:K12589 CTD:23016 HOGENOM:HOG000229504 HOVERGEN:HBG051521
OrthoDB:EOG47SSF7 EMBL:BC089995 IPI:IPI00210099
RefSeq:NP_001094195.1 UniGene:Rn.45886 ProteinModelPortal:Q5EB65
IntAct:Q5EB65 STRING:Q5EB65 GeneID:316098 KEGG:rno:316098
InParanoid:Q5EB65 NextBio:670427 Genevestigator:Q5EB65
Uniprot:Q5EB65
Length = 257
Score = 169 (64.5 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 42/119 (35%), Positives = 57/119 (47%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+++L V M PK RP+EG L + S A+P+FE D I L + F
Sbjct: 22 TDILVGVKAEMGTPKLERPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNN 81
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQ 572
+DL SLC+ E W + VD+ +L GNL SIA AAL + R P V D+
Sbjct: 82 KSSVDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDE 140
>POMBASE|SPBC17D1.03c [details] [associations]
symbol:SPBC17D1.03c "exosome subunit Rrp43 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR001247 PomBase:SPBC17D1.03c InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0071035 GO:GO:0071038
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 Pfam:PF03725 eggNOG:COG2123
HOGENOM:HOG000229504 KO:K12586 PIR:T39706 RefSeq:NP_596385.1
ProteinModelPortal:Q10205 STRING:Q10205 EnsemblFungi:SPBC17D1.03c.1
GeneID:2540189 KEGG:spo:SPBC17D1.03c OMA:ECINRAT OrthoDB:EOG4WHCW5
NextBio:20801321 Uniprot:Q10205
Length = 270
Score = 170 (64.9 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 42/141 (29%), Positives = 72/141 (51%)
Query: 434 NWTSISAENGEAVWCPWVKPSE--VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQF 491
N IS NG A+ ++ E + + + P PNEG + N ELSP+ S +F
Sbjct: 50 NDNCISTANGSAI----IRAGENVFVCGIKAEIAEPFENSPNEGWIVPNLELSPLCSSKF 105
Query: 492 ETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCS 551
+ G +D + ++++ L + ++S I+L+SLC+ ++ W + D+ LNYDG+
Sbjct: 106 KPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIFEKKAAWVLYADIICLNYDGSAFDYAW 165
Query: 552 IAALAALAHFRHPDVTSTGDQ 572
A AAL + P T+ D+
Sbjct: 166 AALFAALKTVKLP--TAVWDE 184
>MGI|MGI:1913696 [details] [associations]
symbol:Exosc7 "exosome component 7" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:1913696 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 EMBL:CH466587 Pfam:PF03725
eggNOG:COG2123 KO:K12589 OMA:GRSCEDY CTD:23016 HOGENOM:HOG000229504
HOVERGEN:HBG051521 OrthoDB:EOG47SSF7 EMBL:AK004437 EMBL:AK011294
EMBL:AC134248 EMBL:BC094932 EMBL:BC132363 EMBL:BC145675
IPI:IPI00132723 IPI:IPI00387489 RefSeq:NP_001074657.1
UniGene:Mm.41562 ProteinModelPortal:Q9D0M0 STRING:Q9D0M0
PhosphoSite:Q9D0M0 PaxDb:Q9D0M0 PRIDE:Q9D0M0
Ensembl:ENSMUST00000026891 GeneID:66446 KEGG:mmu:66446
GeneTree:ENSGT00530000063093 InParanoid:Q9D0M0 NextBio:321717
CleanEx:MM_EXOSC7 Genevestigator:Q9D0M0
GermOnline:ENSMUSG00000025785 Uniprot:Q9D0M0
Length = 291
Score = 171 (65.3 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 42/119 (35%), Positives = 57/119 (47%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+++L V M PK +PNEG L + S A+P+FE D I L + F
Sbjct: 56 TDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNN 115
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQ 572
+DL SLC+ E W + VD+ +L GNL SIA AAL + R P V D+
Sbjct: 116 KSSVDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDE 174
>UNIPROTKB|Q15024 [details] [associations]
symbol:EXOSC7 "Exosome complex component RRP42"
species:9606 "Homo sapiens" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000178 "exosome
(RNase complex)" evidence=IDA;TAS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006401 "RNA catabolic process" evidence=NAS] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
GO:GO:0000175 EMBL:AC104165 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
Pfam:PF03725 eggNOG:COG2123 KO:K12589 OMA:GRSCEDY EMBL:BC012831
EMBL:D29958 IPI:IPI00014198 RefSeq:NP_055819.2 UniGene:Hs.719958
ProteinModelPortal:Q15024 SMR:Q15024 IntAct:Q15024
MINT:MINT-1457458 STRING:Q15024 PhosphoSite:Q15024 DMDM:21362903
SWISS-2DPAGE:Q15024 PaxDb:Q15024 PeptideAtlas:Q15024 PRIDE:Q15024
DNASU:23016 Ensembl:ENST00000265564 GeneID:23016 KEGG:hsa:23016
UCSC:uc003coh.1 CTD:23016 GeneCards:GC03P045016 H-InvDB:HIX0003236
HGNC:HGNC:28112 HPA:HPA036182 MIM:606488 neXtProt:NX_Q15024
PharmGKB:PA134880567 HOGENOM:HOG000229504 HOVERGEN:HBG051521
InParanoid:Q15024 OrthoDB:EOG47SSF7 PhylomeDB:Q15024 ChiTaRS:EXOSC7
EvolutionaryTrace:Q15024 GenomeRNAi:23016 NextBio:43952
ArrayExpress:Q15024 Bgee:Q15024 Genevestigator:Q15024
GermOnline:ENSG00000075914 Uniprot:Q15024
Length = 291
Score = 170 (64.9 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 41/119 (34%), Positives = 58/119 (48%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+++L V M PK +PNEG L + S A+P+FE D I L + F
Sbjct: 56 TDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNN 115
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQ 572
+DL++LC+ E W + VD+ +L GNL SIA AAL + R P V D+
Sbjct: 116 KSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDE 174
>ZFIN|ZDB-GENE-050417-47 [details] [associations]
symbol:exosc7 "exosome component 7" species:7955
"Danio rerio" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-050417-47 InterPro:IPR020568 SUPFAM:SSF54211
Pfam:PF03725 KO:K12589 CTD:23016 HOVERGEN:HBG051521 EMBL:BC092997
IPI:IPI00507426 RefSeq:NP_001017585.1 UniGene:Dr.84480
ProteinModelPortal:Q561W8 SMR:Q561W8 STRING:Q561W8 GeneID:550247
KEGG:dre:550247 InParanoid:Q561W8 NextBio:20879510
ArrayExpress:Q561W8 Uniprot:Q561W8
Length = 291
Score = 161 (61.7 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 40/119 (33%), Positives = 60/119 (50%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
++VL + + P+ P+EG L + S A+P+FE + V ++ L K F
Sbjct: 56 TDVLVGIKAEIGKPRPMVPDEGYLEFFVDCSANATPEFEGRGGEELGVELSNTLYKVFNN 115
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQ 572
+DL SLC+ E W + VD+ +L DGNL SIA AAL + R P V + D+
Sbjct: 116 RHSLDLRSLCICPGENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPKVHISEDE 174
>FB|FBgn0034065 [details] [associations]
symbol:Rrp42 "Rrp42" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005652
"nuclear lamina" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
EMBL:AE013599 GO:GO:0005737 GO:GO:0022008 GO:GO:0016787
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0005652 GO:GO:0000176
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123 KO:K12589
GeneTree:ENSGT00530000063093 EMBL:BT024331 RefSeq:NP_725517.2
UniGene:Dm.16025 SMR:Q29QQ9 IntAct:Q29QQ9 STRING:Q29QQ9
EnsemblMetazoa:FBtr0087206 GeneID:36766 KEGG:dme:Dmel_CG8395
UCSC:CG8395-RA CTD:36766 FlyBase:FBgn0034065 InParanoid:Q29QQ9
OMA:DRNNKTP OrthoDB:EOG444J25 GenomeRNAi:36766 NextBio:800273
Uniprot:Q29QQ9
Length = 296
Score = 136 (52.9 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 31/116 (26%), Positives = 59/116 (50%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+++L V + +P P G L + S A+P+FE +D + + L+ ++
Sbjct: 56 TDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQNAYES 115
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTST 569
+ +LC++ ++ W + +D+ +L GNL S+AA AAL + + P VT+T
Sbjct: 116 PLAFNYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLPRVTAT 171
>TAIR|locus:2077522 [details] [associations]
symbol:AT3G07750 "AT3G07750" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0000478 "endonucleolytic cleavage involved in
rRNA processing" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
EMBL:CP002686 InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725
eggNOG:COG2123 KO:K12589 OMA:GRSCEDY HSSP:P50597 EMBL:AF325018
EMBL:BT020424 EMBL:AK119005 IPI:IPI00539704 RefSeq:NP_566318.1
RefSeq:NP_850537.1 UniGene:At.18345 ProteinModelPortal:Q9FPI0
SMR:Q9FPI0 IntAct:Q9FPI0 STRING:Q9FPI0 PaxDb:Q9FPI0 PRIDE:Q9FPI0
EnsemblPlants:AT3G07750.1 EnsemblPlants:AT3G07750.2 GeneID:819966
KEGG:ath:AT3G07750 TAIR:At3g07750 InParanoid:Q9FPI0
PhylomeDB:Q9FPI0 ProtClustDB:CLSN2688156 Genevestigator:Q9FPI0
Uniprot:Q9FPI0
Length = 286
Score = 118 (46.6 bits), Expect = 0.00050, P = 0.00050
Identities = 36/124 (29%), Positives = 62/124 (50%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
++V+A V + P + +P++G + + + SP A P F + S + L++C
Sbjct: 53 TDVIASVKAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLG 112
Query: 514 SKC-----IDLESLCVVAEEKV-WNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVT 567
K I+L SL ++ E KV W++ +D V++ DGNLL A AAL + P V
Sbjct: 113 GKSGAGAGINLSSL-LIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVN 171
Query: 568 STGD 571
+ +
Sbjct: 172 VSAE 175
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 756 728 0.00086 121 3 11 22 0.41 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 627 (67 KB)
Total size of DFA: 393 KB (2192 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 61.54u 0.09s 61.63t Elapsed: 00:01:01
Total cpu time: 61.55u 0.09s 61.64t Elapsed: 00:01:04
Start: Thu Aug 15 13:12:56 2013 End: Thu Aug 15 13:14:00 2013