RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9088
(756 letters)
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase,
exonuclease, phosphorolytic, exoribonuclease, RNA
degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus}
SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A
2c37_A* 2c38_A* 2c39_A* 3l7z_A
Length = 277
Score = 183 bits (466), Expect = 9e-53
Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
VLA + P PN+G L +N EL P+A FE G + ++ + R +++ ++SK
Sbjct: 65 VLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSK 124
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
+DL L + + VW V +D+ VL+Y GN+L C++A++AAL + + V + I +
Sbjct: 125 ALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISV 184
Query: 576 HSAAEKDPIPMTILHYPVTISYAVFNG 602
+ +P+ + VTIS A +
Sbjct: 185 NKNEVVGKLPLN--YPVVTISVAKVDK 209
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5'
exoribonuclease, hydrolase; 2.65A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 271
Score = 178 bits (454), Expect = 4e-51
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 3/147 (2%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
++ V + P P G++ N+EL PMASP FE G + SV ++R +++C +ES+
Sbjct: 60 IIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRESR 119
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
IDLE LC++ KVW + +DL++++YDGNL +A +AAL R P +++I
Sbjct: 120 MIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVI 179
Query: 576 HSAAEKDPIPMTILHYPVTISYAVFNG 602
+ + P+ + + ++A
Sbjct: 180 N---REKMQPLPVNRKALMCTFAKIGN 203
>2po1_B Probable exosome complex exonuclease 2; RNAse PH,
hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus
abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Length = 277
Score = 174 bits (442), Expect = 2e-49
Identities = 47/147 (31%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
VL + ++ P PN G++ N EL P+ASP FE G + ++ + R +++ +ESK
Sbjct: 62 VLVGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESK 121
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
++LE + +V + V V +D++VL++DGNL+ IAA+AAL + R P V + +
Sbjct: 122 ALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEV 181
Query: 576 HSAAEKDPIPMTILHYPVTISYAVFNG 602
+ E +P+P+ PV +++A
Sbjct: 182 ETLDETEPLPVE--KIPVPVTFAKIGN 206
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease,
hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus
fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Length = 259
Score = 173 bits (441), Expect = 2e-49
Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 10/147 (6%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
V+ V P P+ G++ +NAEL P+ASP FE G + S+ + R +++ +ES+
Sbjct: 58 VVVGVKMQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRESE 117
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
+DL L + EKVW V VD++ L+ DGNLL ++AA+AAL + + P
Sbjct: 118 AVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAER-------- 169
Query: 576 HSAAEKDPIPMTILHYPVTISYAVFNG 602
+ + + PV+++ +
Sbjct: 170 --FDLGEDYLLPVRDLPVSVTSLIVGN 194
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 166 bits (421), Expect = 1e-45
Identities = 82/150 (54%), Positives = 111/150 (74%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ VL QVSC +V PK R EG+LF N ELS MA+P FE GRQ+D V +NR +E+C +
Sbjct: 70 TRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRN 129
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
SKCID ESLCVVA EKVW +RVDL++LN+DGN++ SIAA+ AL HFR PDV+ GD++
Sbjct: 130 SKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEV 189
Query: 574 IIHSAAEKDPIPMTILHYPVTISYAVFNGG 603
+++ E+DP+P++I H P+ +S+A F G
Sbjct: 190 TLYTPEERDPVPLSIHHMPICVSFAFFQQG 219
Score = 31.5 bits (71), Expect = 1.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1 MREFPVSNLEKSFVLSGILQNK 22
M+E P+SN E+ F+L I + K
Sbjct: 18 MKETPLSNCERRFLLRAIEEKK 39
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding,
exonucle binding, mitochondrion, rRNA processing; 3.00A
{Saccharomyces cerevisiae}
Length = 305
Score = 151 bits (383), Expect = 4e-41
Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTD-TSVMINRFLEKCFK 512
++V ++SC + P RP EGL I+ E+SPMA QFE G T V+ +R +EK +
Sbjct: 54 TKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVR 113
Query: 513 ESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQ 572
S +D+E LC+VA K W VR D++ L+ DG + IA +A L HF+ PD+T G+Q
Sbjct: 114 RSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQ 173
Query: 573 IIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPG 611
II+H E++P+P+ ILH P+ ++++ FN + G
Sbjct: 174 IIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKG 212
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 278
Score = 148 bits (376), Expect = 2e-40
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+ V+ V P P++G + N +L P+ S +F +G + + + ++F+ +
Sbjct: 58 TTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIEN 117
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI 573
S+ I E LC+ + VW + DL L+YDGN+L C+ A LAAL + + P+VT ++
Sbjct: 118 SQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVT-INEET 176
Query: 574 IIHSAAEKDPIPMTILHYPVTISYAVFNGG 603
+ K + I +PV S+AVF+
Sbjct: 177 ALAEVNLKKKSYLNIRTHPVATSFAVFDDT 206
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 305
Score = 148 bits (375), Expect = 5e-40
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 4/153 (2%)
Query: 454 SEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKE 513
+++L V M PK +PNEG L + S A+P+FE D I L + F
Sbjct: 70 TDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNN 129
Query: 514 SKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQ- 572
+DL++LC+ E W + VD+ +L GNL SIA AAL + R P V D+
Sbjct: 130 KSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEE 189
Query: 573 ---IIIHSAAEKDPIPMTILHYPVTISYAVFNG 602
I S D I +++ + P ++
Sbjct: 190 GSKDIELSDDPYDCIRLSVENVPCIVTLCKIGY 222
Score = 28.5 bits (63), Expect = 8.0
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 1 MREFPVSNLEKSFVLSGILQNK 22
M +S EK +++ G+ ++
Sbjct: 15 MASVTLSEAEKVYIVHGVQEDL 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 6e-09
Identities = 96/551 (17%), Positives = 152/551 (27%), Gaps = 204/551 (37%)
Query: 5 PVSNLE---K--SFVLSGILQNKVKKIIVNIGEDESILKSTTTLEQLLEEINFQRAKEKR 59
P + E K +V S + +KV G+ + +L L E F+
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKV-------GQFDQVLNL------CLTE--FEN----- 93
Query: 60 QYLRNDMFLTQGTSYWTDL--FVRYFLFQTDSNIDCDDLLFFVRKKYIK---TSSRNLPK 114
YL + D+ L + D+ + L K YI + R K
Sbjct: 94 CYLEGN-----------DIHALAAKLLQENDTTLVKTKELI---KNYITARIMAKRPFDK 139
Query: 115 FETEVEVFRK-DSRKLPI-------GDPDVDWEE--TVYLNMIIHQFDYTLTLAICTRTS 164
++ +FR + G+ D +EE +Y Y + + + S
Sbjct: 140 -KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ-------TYHVLVGDLIKFS 191
Query: 165 PKHLQVLKRHS---QKVY--------------ASPSRRRMDTK-------GEVEEMTYPC 200
+ L L R + +KV+ +P + + + G ++ Y
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 201 VC----FTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSIRYDALK----- 251
FT +V +A S +S F S+R A+
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE--TDSWES--FFVSVR-KAITVLFFI 306
Query: 252 --RVYDA--RTSVSNKFTQR-----------M------------SFGIFSNNS------- 277
R Y+A TS+ + M + + NS
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY-VNKTNSHLPAGKQ 365
Query: 278 ------NSRIEFV----------------KMKGPQGKG-----FAEMAVTKPKGYGVETP 310
N V K K P G F+E K K P
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER---KLKFSNRFLP 422
Query: 311 TSEP----------GYCETDMWDSDWDDDPEDF----YYYRHQRRLSDPSANIN-MFAKS 355
+ P D+ ++ + +D Y L S +I+
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 356 IWKGPVN--KTTAKAVS--------EDEGLDSLAH------GVAEIEAGDMRDELDDGAY 399
I + PV TT + GL L H GV I AG + D D Y
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL-DINPDDDY 541
Query: 400 NPLWTMRGFTQ 410
GF Q
Sbjct: 542 -------GFKQ 545
Score = 52.0 bits (124), Expect = 7e-07
Identities = 94/596 (15%), Positives = 157/596 (26%), Gaps = 242/596 (40%)
Query: 205 VDNFNEVF---HDI--LVRDGEMVCVELVASDRAGSVKSVIFLGSIRYDALKRVYDARTS 259
+ F + +DI L +L+ + VK + +K AR
Sbjct: 88 LTEFENCYLEGNDIHALA-------AKLLQENDTTLVK--------TKELIKNYITARIM 132
Query: 260 VSNKFTQRMSFGIF--SNNSNSRI--EFVKMKGPQGKG---FAEMA---VTKPKGYG--- 306
F ++ + +F N+++ F G QG F E+ T Y
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIF----GGQGNTDDYFEELRDLYQT----YHVLV 184
Query: 307 --------------VETPTSEPGYCETDMWD-SDWDDDPE---DFYYYRHQRRLSDP-S- 346
+ T + + +W ++P D Y LS P S
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYL-----LSIPISC 238
Query: 347 --------ANINMFAKSIWKGPVNKTTAKAVSEDEGLDSLAHGV---AEIEAGDMRDELD 395
A+ + AK + T + S +G + G+ I D +
Sbjct: 239 PLIGVIQLAHYVVTAKLL-----GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 396 DGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSE 455
+ T F+ R + + S EN E V P
Sbjct: 294 VSVRKAI--------TVLFFIGV-RCYEAYPNTSLPPSI-LEDSLENNEGV--P------ 335
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSV-MINRFLEKCFKES 514
SPM S T Q V N L
Sbjct: 336 ----------------------------SPMLSISNLTQEQVQDYVNKTNSHL----PAG 363
Query: 515 KCIDLESL------CVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALA-HFRHPDVT 567
K +++ SL VV+ G +L L R
Sbjct: 364 KQVEI-SLVNGAKNLVVS-----------------GP------PQSLYGLNLTLRKAKAP 399
Query: 568 STGDQIII--------------------HS-----AAEK---DPIPMTI------LHYPV 593
S DQ I HS A++ D + + + PV
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 594 TISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQKLGVDSAYANLVNKTDRILLD--- 650
Y F+G D + L S +V D I+
Sbjct: 460 ---YDTFDG-----------------------SDLRVLS-GSISERIV---DCIIRLPVK 489
Query: 651 -EGEKDSGETKVKVEKVGPG----IADLISKSDIEPSGIKNQWVSSSDDESSAEDD 701
E T + ++ GPG + L ++ + +G+ + + + + + +DD
Sbjct: 490 WETTTQFKATHI-LD-FGPGGASGLGVLTHRN-KDGTGV--RVIVAGTLDINPDDD 540
Score = 52.0 bits (124), Expect = 8e-07
Identities = 75/449 (16%), Positives = 147/449 (32%), Gaps = 130/449 (28%)
Query: 330 PEDFYYYRHQRRLSDPSANINMFAKSIWKGPVNKTTAKAVSEDEGLDSLAHGVAE----I 385
P ++ Q L + F K + + T ++DE + A V + +
Sbjct: 23 PTASFFIASQ--LQE------QFNKIL-----PEPTEGFAADDE-PTTPAELVGKFLGYV 68
Query: 386 EAGDMRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENGEA 445
+ + G ++ + + F E+ ++ + +++A+ +
Sbjct: 69 S--SLVEPSKVGQFDQV--LNLCLTEF----EN---------CYLEGNDIHALAAKLLQE 111
Query: 446 VWCPWVKPSEVLAQ--VSCNMVIPKATRPNEGLLFINAELSPMAS--PQFETGRQTDTSV 501
VK E++ + M + + LF A F G Q +T
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG-EGNAQLVAIF--GGQGNT-- 166
Query: 502 MINRFLEKCFKE-------SKCIDLESLCVVAEEKVWNV---RVDLNVLNYDGNLLGCCS 551
+ F+E + + L + E + + +D + G
Sbjct: 167 ------DDYFEELRDLYQTYHVL-VGDLIKFSAETLSELIRTTLDAEKVFTQG------- 212
Query: 552 IAALAALAHFRHPDVTSTGDQIIIHSAAEKDPI--PMTIL----HYPVTISYAVFNGGSE 605
+ L L +P +T D+ + S PI P+ + HY VT F G
Sbjct: 213 LNILEWL---ENPS--NTPDKDYLLSI----PISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 606 GSTVPGFTECIQ-LDTALALSQDRQKLGVDS--AYANLVNKTDRILLDEGEKDSGETKVK 662
S + G T Q L TA+A+++ DS ++ V K +L G V+
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAE------TDSWESFFVSVRKAITVLFFIG--------VR 309
Query: 663 VEKVGPGIADLISKSDIEPSGIKNQWVSSSDDESSAEDDKAETPRVQSVEDEGDEV--ML 720
+ P + + PS ++ +S ++ +P + S+ + E
Sbjct: 310 CYEAYPNTS-------LPPSILE---------DSLENNEGVPSPML-SISNLTQEQVQDY 352
Query: 721 VDSVN---PRTKV--------REEVVLSG 738
V+ N P K + +V+SG
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Score = 36.2 bits (83), Expect = 0.057
Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 82/239 (34%)
Query: 533 VRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMT----- 587
+R + + + ++ + G + F ++ S EK + T
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKI-----F--KEINEHSTSYTFRS--EKGLLSATQFTQP 1734
Query: 588 -ILHYPVTISYAVFNG-GSEGSTVPGFTECIQLDTALA-LSQDRQKLG-----VDSAYAN 639
+ + A F S+G I D A S LG + A+
Sbjct: 1735 ALT----LMEKAAFEDLKSKGL--------IPADATFAGHS-----LGEYAALA--SLAD 1775
Query: 640 ---------LVNKTDRILLDEGEKDSGETKVKVEKVGPGIADLISKSDIEPSGIKNQWVS 690
+V R G + + V +++G +I+ I P + +
Sbjct: 1776 VMSIESLVEVVFY--R-----GM--TMQVAVPRDELGRSNYGMIA---INPGRV----AA 1819
Query: 691 SSDDESSAEDDKAETPRVQSVEDEGDEVMLVDSVN---PRTKVREEVVLSGDSEEEDTV 746
S E+ V+ V + V+ VN ++ V +GD DTV
Sbjct: 1820 SFSQEALQY-------VVERVGKRTGWL--VEIVNYNVEN----QQYVAAGDLRALDTV 1865
Score = 32.7 bits (74), Expect = 0.51
Identities = 58/365 (15%), Positives = 108/365 (29%), Gaps = 138/365 (37%)
Query: 353 AKSIWKGPVNKTTAKAVSEDEGL-DSLAHGVAEIEAGDMRDELDDGAYNPLWTMRGFTQT 411
A+ +W +A D D+ + +I + + NP+ T
Sbjct: 1642 AQDVWN--------RA---DNHFKDTYGFSILDI----VIN-------NPV------NLT 1673
Query: 412 FHFWKESKRAQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKAT- 470
HF E + EN++++ E +K ++ ++ N T
Sbjct: 1674 IHFGGEKGKR---------IRENYSAMIFETIVD---GKLKTEKIFKEI--NEHSTSYTF 1719
Query: 471 RPNEGLLFINAELSPMASPQFETGRQ---TDTSVMINRFLEKCFKESKCIDLESLCVVA- 526
R +GLL + QF T Q T L K I ++ A
Sbjct: 1720 RSEKGLLS---------ATQF-T--QPALTLMEKAAFEDL----KSKGLIPADA--TFAG 1761
Query: 527 ----EEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQI--------I 574
E Y AALA+LA DV S +
Sbjct: 1762 HSLGE--------------Y----------AALASLA-----DVMSIESLVEVVFYRGMT 1792
Query: 575 IHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFT-ECIQLDTALALSQDRQKLGV 633
+ A +D + + +Y + + G F+ E +Q + + +
Sbjct: 1793 MQVAVPRDELGRS--------NYGMI-AINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 634 DSAYANLVNKTDR---ILLDEGEKDSGETKVKVEKVGPGIADLISKSDIEPSGIKNQWVS 690
N N ++ +G+ + ++ V + + I I+ ++ S
Sbjct: 1844 ----VNY-NVENQQYVA--------AGDLR-ALDTVT-NVLNFIKLQKIDIIELQ---KS 1885
Query: 691 SSDDE 695
S +E
Sbjct: 1886 LSLEE 1890
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 2e-07
Identities = 64/580 (11%), Positives = 149/580 (25%), Gaps = 165/580 (28%)
Query: 3 EFPVSNLEKSF--VLSGILQNKVKKIIVNIGEDESILKSTTTLEQLLEEINFQRAKEKRQ 60
+F + + +LS V +D KS + E++ + I +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM--PKSILSKEEI-DHIIMSKDAVSGT 64
Query: 61 YLRNDMFLTQGTSYWTDLFVRYFLFQTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVE 120
L++ V+ F + I+ L+ ++ + + S + + +
Sbjct: 65 LRLFWTLLSKQEE-----MVQKF-VEEVLRINYKFLMSPIKTEQRQPS-MMTRMYIEQRD 117
Query: 121 VFRKDSRKLPIGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVYA 180
D++ Y ++ R + L++ ++
Sbjct: 118 RLYNDNQVFA---------------------KYNVS-----R--LQPYLKLRQALLEL-- 147
Query: 181 SPSRRRMDTKGEVEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVI 240
P ++ DG + GS K+ +
Sbjct: 148 RP------------------------------AKNVLIDG-V----------LGSGKTWV 166
Query: 241 FLGSIRYDALKRVYDARTSVSNKFTQRMSFGIF---SNNSNSRIEFVKMK-------GPQ 290
L S K +M F IF N NS ++M P
Sbjct: 167 ALDVCL--------------SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 291 GKGFAEMAVTKPKGYGVETPT-----SEPGYCET-----DMWDSDWDDDPEDFYYYRHQR 340
++ + Y ++ ++ + + +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNAFNL----SCK 267
Query: 341 RL--SDPSANINMFAKSIWKGPVNKTTAKAVSEDEGLDSLAHGVAEIEAGDMRDELDDGA 398
L + + + + + ++ DE L + D+ E+
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTT- 325
Query: 399 YNPLW------TMRGFTQTFHFWKES-----KRAQDWTDVDFMSSENWT------SISAE 441
NP ++R T+ WK + + ++ + + S+
Sbjct: 326 -NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFPP 383
Query: 442 NGEAVWCP-------WVKPSEVLAQVSCNMVIPK---ATRPNEGLLFINAELSPMASPQF 491
+ P W + V N + +P E + I S
Sbjct: 384 S---AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-------SIYL 433
Query: 492 ETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVW 531
E + + ++R + + K D + L ++ +
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Score = 49.1 bits (116), Expect = 5e-06
Identities = 85/635 (13%), Positives = 172/635 (27%), Gaps = 206/635 (32%)
Query: 1 MREFPVSNLEKSFVLSGILQNKVKKIIVNIGEDESILKSTTTLEQLLEEINFQRAKEKRQ 60
+ F +++ IL + E + I+ S + L +K++
Sbjct: 30 VDNFDCKDVQDM--PKSILSKE---------EIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 61 YLRNDMFLTQG--TSY---WTDLFVRYF--LFQTDSNIDCDDLLFFVRKKYIKTSSRNLP 113
F+ + +Y + + T I+ D L+ + + K N+
Sbjct: 79 V---QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK---YNVS 132
Query: 114 KFETEVEVFRKDSRKLPIGDPDVDWEETVYLN-M-----------------IIHQFD--- 152
+ + R+ +L P + V ++ + + + D
Sbjct: 133 RLQ-PYLKLRQALLEL---RP----AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 153 YTLTLAICTRTS--PKHLQVLKRHSQKVYASPSRRRMDTKGEVEEMTYPCVCFTVDNFNE 210
+ L L C + LQ L + S S + K + +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--------AELRR 236
Query: 211 VFHD--------IL--VRDGEMV------CVELVASDRAGSVKSVIFLGSIRYDALKRVY 254
+ +L V++ + C L+ + R V + A +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-RFKQVTDFL-------SAATTTH 288
Query: 255 DARTSVSNKFTQRMSFGIFSNNSNSRIEFVKMKGPQGKGFAEMAVTKPKGYGV--ETPTS 312
+ S T + + R + P+ E+ T P+ + E+
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQ----DLPR-----EVLTTNPRRLSIIAESIRD 339
Query: 313 EPGYCETDMWDSDWDD-----------------DPEDFY-YYRHQRRLS--DPSANINMF 352
WD+ W +P ++ + RLS PSA+I
Sbjct: 340 GL-----ATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTI 390
Query: 353 AKSI-WKGPVNKTTAKAVSEDEGLDSLA-----------HGVAEIEAGDMRDELDD---- 396
S+ W + V++ SL + +++ +L++
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYL----ELKVKLENEYAL 445
Query: 397 -----GAYNPLWTMRGFTQT----------------FHFWKESKRAQDWTD-----VDFM 430
YN + F H K + + T +DF
Sbjct: 446 HRSIVDHYNIP---KTFDSDDLIPPYLDQYFYSHIGHHL-KNIEHPERMTLFRMVFLDF- 500
Query: 431 SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQ 490
+ + W L Q+ K +P +I P+
Sbjct: 501 ---RFLEQKIRHDSTAWNASGSILNTLQQL-------KFYKP-----YICDN-----DPK 540
Query: 491 FETGRQTDTSVMINRFLEKCFKESKCIDLESLCVV 525
+E R + I FL K E I + ++
Sbjct: 541 YE--RLVNA---ILDFLPKI--EENLICSKYTDLL 568
Score = 37.1 bits (85), Expect = 0.023
Identities = 33/234 (14%), Positives = 75/234 (32%), Gaps = 69/234 (29%)
Query: 4 FPVSNLEKSFVLSGILQNKVKK----IIVNIGEDESILK-----STTTLEQLLEEINFQR 54
FP S + +LS ++ V K ++VN S+++ ST ++ + E+ +
Sbjct: 381 FPPSAHIPTILLS-LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 55 AKEK-------------RQYLRNDMFLTQGTSYWTDLFVRYFLFQTDSNIDCDDL---LF 98
E + + +D+ Y+ + + L + + + L +F
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-HIGHHLKNIE-HPERMTLFRMVF 497
Query: 99 ----FVRKKYIKT-SSRNLPKFE----TEVEVFRKDSRKLPIGDPDVDWEETVYLNMIIH 149
F+ +K ++ N +++ ++ I D D +E +N I+
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-----ICDNDPKYER--LVNAILD 550
Query: 150 QFDYTLTLAICTRTSPKHLQVLKRHSQKVYASPSRR-----RMDTKGEVEEMTY 198
F L + + + S M + E +
Sbjct: 551 -F-------------------LPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural
genomics/proteomics initiative structural genomics;
2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB:
1udq_A 1uds_A 1udo_A
Length = 255
Score = 38.2 bits (89), Expect = 0.005
Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 26/153 (16%)
Query: 456 VLAQVSC-NMVIPKATRPNEGLLFINAELSPMASPQFE-----TGRQTDTSVMINRFLEK 509
V+ S V +G + + P A+ Q GR + I R + +
Sbjct: 37 VICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGR 96
Query: 510 CFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTST 569
+ ++L + + VD +V+ DG A A+A
Sbjct: 97 AMR--TAVELTKIGE------RTIWVDCDVIQADGGTRTAAITGAFVAVAD--------A 140
Query: 570 GDQIIIHSAAEKDPIPMTILHYPVTISYAVFNG 602
++ E+ P I + +S + N
Sbjct: 141 IIKLHKEGIIEETP----IKDFVAAVSVGIVND 169
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 35.0 bits (80), Expect = 0.050
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 13/57 (22%)
Query: 182 PSRRRMDTKGEVEEMTYPC-VCFTVDNFNEVFHDILVRD---GEMVCVE--LVASDR 232
+R +G + C C +V G++VC LV SD+
Sbjct: 6 SIDKRAGRRGPNLNIVLTCPECKVYP-------PKIVERFSEGDVVCALCGLVLSDK 55
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS
protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Length = 87
Score = 31.2 bits (71), Expect = 0.19
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 25 KIIVNIGEDESILKSTTTLEQLLEEINFQRAK 56
+ +N G+D K T T++ LL +
Sbjct: 22 MLQLN-GKDVKWKKDTGTIQDLLASYQLENKI 52
>2cjq_A RNA-directed RNA polymerase; transferase, RNA-dependent RNA
polymerase, nucleotidyltransferase, BVDV, helicase,
membrane, protease; 2.60A {Bovine viral diarrhea virus}
PDB: 1s48_A 1s49_A* 1s4f_A
Length = 720
Score = 33.7 bits (76), Expect = 0.25
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 403 WTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSEVLA 458
G Q + K A + D++F S + + + + + +L+
Sbjct: 471 LHEAGKPQKITEGERMKVAYRFEDIEFCSH-TPVPVRWSDNTSSYMAGRDTAVILS 525
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.43
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
Query: 169 QVLKR--HSQKVYA---SPSRRRMDTKGEVE 194
Q LK+ S K+YA +P+ + K +E
Sbjct: 20 QALKKLQASLKLYADDSAPA---LAIKATME 47
Score = 28.8 bits (63), Expect = 3.9
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 9/29 (31%)
Query: 102 KKYIKTSSRNLPKFETEVEVFRKDSRKLP 130
K+ +K K + ++++ DS P
Sbjct: 19 KQALK-------KLQASLKLYADDSA--P 38
>2hcn_A RNA-directed RNA polymerase (NS5); WEST-NIle virus RNA polymerase,
structural genomics, marseil structural genomics program
@ AFMB, MSGP, vizier; 2.35A {Kunjin virus} PDB: 2hcs_A
2hfz_A
Length = 595
Score = 32.3 bits (73), Expect = 0.59
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 415 WKESKRAQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSEVLA 458
WK S DW V F S+ ++T + ++G + P E++
Sbjct: 389 WKPSTGWYDWQQVPFCSN-HFTELIMKDGRTLVTPCRGQDELVG 431
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei;
transcription, gene regulation; 1.90A {Moorella
thermoacetica} PDB: 2vy9_A 3ztb_A*
Length = 123
Score = 30.8 bits (70), Expect = 0.60
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 14 VLSGILQNKVKKIIVNIGEDESILKSTTTLEQLLEEINFQRAKEKR 59
VL+GI + V + +G D + + L++ L+++ E+R
Sbjct: 79 VLTGI-KPAVAITLTEMGLDLRGMATALNLQKGLDKLKNLARMEQR 123
>2j7u_A RNA dependent RNA polymerase; nucleoside binding site, flavivirus,
high-throughput assay, protein; HET: PGE; 1.85A {Dengue
virus} PDB: 2j7w_A*
Length = 635
Score = 32.4 bits (73), Expect = 0.69
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 415 WKESKRAQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSEVLA 458
W+ SK DW V F S ++ + ++G + P E++
Sbjct: 429 WQPSKGWHDWQQVPFCSH-HFHELIMKDGRKLVVPCRPQDELIG 471
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure,
structural genomics, structural proteomics in europe,
spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Length = 90
Score = 29.7 bits (67), Expect = 0.88
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 632 GVDSAYANLVNKTDRILLDEGEKDSGETKVKVEKVGPGIADLISKSDIEPSG 683
V S +L N++ ++ + + +E V PG+ + S++E G
Sbjct: 30 YVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSEVEIEG 81
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain,
homodimer, exosome, cell-death-related DNAS hydrolase;
3.92A {Caenorhabditis elegans}
Length = 222
Score = 30.5 bits (69), Expect = 1.8
Identities = 12/105 (11%), Positives = 30/105 (28%), Gaps = 19/105 (18%)
Query: 459 QVSCNMVIPKATRP---NEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
+ + P ++ + ++ + + +I+ L
Sbjct: 30 CIWASCSGPGDVHASKASDEAMTLDISYRANCGD----NKFNVLNNIIHSTLSNA----- 80
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAH 560
I+LE + V ++ + DG++ A AL
Sbjct: 81 -INLELFP----HTT--ISVTVHGIQDDGSMGAVAINGACFALLD 118
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis,
light-harvesting, membrane protein, chloroplast,
chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD;
2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Length = 232
Score = 29.6 bits (65), Expect = 3.1
Identities = 18/150 (12%), Positives = 31/150 (20%), Gaps = 27/150 (18%)
Query: 295 AEMAVTKPKGYGVETPTSEPGYCETDMW--------DSDWD-----DDPEDFYYYRHQRR 341
++A + YG + + D WD DPE F R
Sbjct: 7 KKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEV 66
Query: 342 LSDPSANINMFAKSIWKGPVNKTTAKAVSEDEGLDSLAH-GVAEIEAGDMRDELDDGAYN 400
+ A M E + + +AG Y
Sbjct: 67 IHSRWA---MLGALGS----------VFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYL 113
Query: 401 PLWTMRGFTQTFHFWKESKRAQDWTDVDFM 430
++ W + +
Sbjct: 114 GNPSLVHAQSILAIWATQVILMGAVEGYRI 143
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate
bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa}
SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Length = 239
Score = 29.3 bits (66), Expect = 4.3
Identities = 23/154 (14%), Positives = 47/154 (30%), Gaps = 30/154 (19%)
Query: 459 QVSCNMVIPKATRP---NEGLLFINAELS--PMASPQFE-----TGRQTDTSVMINRFLE 508
+V C + +G ++ AE P ++ + G+Q ++ I R +
Sbjct: 37 KVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIG 96
Query: 509 KCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTS 568
+ + +DL L + +D +V+ DG A AL
Sbjct: 97 RSLR--AALDLSKLGE------NTLYIDCDVIQADGGTRTASITGATVALIDALAV---- 144
Query: 569 TGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNG 602
+ P+ +S ++ G
Sbjct: 145 ------LKKRGALKGNPLK--QMVAAVSVGIYQG 170
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase,
nucleus, phosphoprotein, PR proteasome, threonine
protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Length = 997
Score = 29.7 bits (66), Expect = 4.4
Identities = 27/188 (14%), Positives = 63/188 (33%), Gaps = 19/188 (10%)
Query: 100 VRKKYIKTSSRNLPKFETEVEVFRKDSRKLPIGDPDVDWEETVYLNMIIHQFDYTLTLAI 159
+ +K+ K + + + D + + + + E + + F T T +
Sbjct: 352 IIHLVVKSLLSTCNKIIS-LSDYEYDITRAYKNEFNPSFVEIL--DTSTTSFPKTFTEEM 408
Query: 160 CTRTSPKHLQVLKRH--------SQKVYASPSRRRMDTKGEVEEMTYPCVCFTVDNFNEV 211
+PK+ L+ + V + + + + E+E + T + +
Sbjct: 409 NNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKALKLNLRENELEVLKTAGHLLTREFLRD- 467
Query: 212 FHDILVRDGEMVCVELVASDRAGSVKSVIFL-----GSIRYDALKRVYDARTSVSNKFTQ 266
LV+D E + +S VI L + L + ++ + +K +
Sbjct: 468 VTMNLVQDNETR--GVFSSGNVSFFSLVILLISSGFCELNMSDLFELCESYYNKDDKASM 525
Query: 267 RMSFGIFS 274
MS I +
Sbjct: 526 IMSVEIVA 533
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 29.0 bits (65), Expect = 7.1
Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 112 LPKFETEVEVFRKDSRKLPIGDPDVDWEETVYLNMIIHQF---DYTLTLAICTRTSPKHL 168
LP ++ V + + + RK P+ DVD E L + + F D T IC R
Sbjct: 647 LPDEKSRVAILKANLRKSPV-AKDVDLEF---LAKMTNGFSGADLT---EICQRAC---K 696
Query: 169 QVLKRHSQKVYASPSRRRMDTKGEVEEMTYPCVCFTVDNFNEVFHDI 215
++ + R+ + E P D+F E
Sbjct: 697 LAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 743
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 28.3 bits (64), Expect = 7.7
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 314 PGYCETDMWDSDWDDDPEDFYYYRHQRRLSDPSANI 349
G E+ W ++ E + + I
Sbjct: 189 IGLVESGQWRRRFEAREERELDWAQWTAQLARNKQI 224
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural
genomics, unknown function; HET: MSE; 2.95A {Bacillus
subtilis} SCOP: c.77.1.4
Length = 345
Score = 28.3 bits (64), Expect = 8.8
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 553 AALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTIS 596
+ + F +T GD+ I S +T+LH I
Sbjct: 22 GVIKGIEAFDDLHITLVGDKTTIESHLTTTSDRITVLHADEVIE 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.391
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,509,468
Number of extensions: 700906
Number of successful extensions: 1521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1506
Number of HSP's successfully gapped: 45
Length of query: 756
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 655
Effective length of database: 3,881,772
Effective search space: 2542560660
Effective search space used: 2542560660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)