RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9088
(756 letters)
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 110 bits (276), Expect = 1e-28
Identities = 75/131 (57%), Positives = 98/131 (74%)
Query: 455 EVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKES 514
VL QVSC +V PK R EG+LF N ELS MA+P FE GRQ+D V +NR +E+C + S
Sbjct: 54 RVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNS 113
Query: 515 KCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQII 574
KCID ESLCVVA EKVW +RVDL++LN+DGN++ SIAA+ AL HFR PDV+ GD++
Sbjct: 114 KCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVT 173
Query: 575 IHSAAEKDPIP 585
+++ E+DP+P
Sbjct: 174 LYTPEERDPVP 184
Score = 32.0 bits (72), Expect = 0.14
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1 MREFPVSNLEKSFVLSGILQNK 22
M+E P+SN E+ F+L I + K
Sbjct: 1 MKETPLSNCERRFLLRAIEEKK 22
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 187
Score = 99.0 bits (246), Expect = 2e-24
Identities = 43/133 (32%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
+L V M PK +PNEG L + S A+P+FE D I L + F
Sbjct: 54 ILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKS 113
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
+DL++LC+ E W + VD+ +L GNL SIA AAL + R P V D+
Sbjct: 114 SVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGS 173
Query: 576 HSA-AEKDPIPMT 587
DP
Sbjct: 174 KDIELSDDPYDCI 186
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 176
Score = 92.1 bits (228), Expect = 4e-22
Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
V+ V P P+ G++ +NAEL P+ASP FE G + S+ + R +++ +ES+
Sbjct: 56 VVVGVKMQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRESE 115
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTST-GDQII 574
+DL L + EKVW V VD++ L+ DGNLL ++AA+AAL + + P G+ +
Sbjct: 116 AVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYL 175
Query: 575 I 575
+
Sbjct: 176 L 176
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 90.6 bits (224), Expect = 1e-21
Identities = 37/128 (28%), Positives = 65/128 (50%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
V+ V P P++G + N +L P+ S +F +G + + + ++F+ + S+
Sbjct: 52 VICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQ 111
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
I E LC+ + VW + DL L+YDGN+L C+ A LAAL + + P+VT + +
Sbjct: 112 IIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALA 171
Query: 576 HSAAEKDP 583
+K
Sbjct: 172 EVNLKKKS 179
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 191
Score = 81.8 bits (201), Expect = 2e-18
Identities = 37/127 (29%), Positives = 67/127 (52%)
Query: 458 AQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCI 517
A + P PN+G L +N EL P+A FE G + ++ + R +++ ++SK +
Sbjct: 65 AGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKAL 124
Query: 518 DLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHS 577
DL L + + VW V +D+ VL+Y GN+L C++A++AAL + + V + I ++
Sbjct: 125 DLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNK 184
Query: 578 AAEKDPI 584
+
Sbjct: 185 NEVVGKL 191
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 148
Score = 45.2 bits (106), Expect = 3e-06
Identities = 13/116 (11%), Positives = 39/116 (33%), Gaps = 9/116 (7%)
Query: 446 VWCPWVKPSEVLAQVSCNMVIP-KATRPNEGLLFINAELSPMASPQFETGRQTDTSVMIN 504
+ A + P + P+ +L + ++P ++ + + + + ++
Sbjct: 38 AIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELS 97
Query: 505 RFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAH 560
+ + + + + ++ + V +L D +AA ALA
Sbjct: 98 KVIREALESAVLVE--------LFPRTAIDVFTEILQADAGSRLVSLMAASLALAD 145
>d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 44.1 bits (103), Expect = 8e-06
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 465 VIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCV 524
+A G L + +P A + + L++ + + +
Sbjct: 56 AGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALEPAVRLG------ 109
Query: 525 VAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAH 560
+ V +L G+ L AA ALA
Sbjct: 110 --RYPRAQLEVSALLLEDGGSALAAALTAAALALAD 143
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 144
Score = 43.3 bits (101), Expect = 2e-05
Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 8/103 (7%)
Query: 458 AQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCI 517
+ P++ ++ ++P + + + S+ I++ ++ F+
Sbjct: 47 VFGPREVHPRHLQDPSKAIIRYRYNMAPFSVEERKRPGPDRRSIEISKVSKEAFEAVIMK 106
Query: 518 DLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAH 560
+ + + + VL D C AA AL
Sbjct: 107 E--------LFPRSAIDIFVEVLQADAGSRTACLNAASVALVD 141
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 151
Score = 41.0 bits (95), Expect = 1e-04
Identities = 16/115 (13%), Positives = 39/115 (33%), Gaps = 2/115 (1%)
Query: 450 WVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEK 509
++V+ VS +P+ + +G ++ AE + E ++ + +
Sbjct: 32 EFGDTKVICTVSAESGVPRFLK-GQGQGWLTAEYGMLPRSTGERNQREASRGKQGGRTLE 90
Query: 510 CFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHP 564
+ L + +++ + +D +V+ DG A AL
Sbjct: 91 IQRLIGRS-LRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAV 144
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex
aeolicus [TaxId: 63363]}
Length = 149
Score = 38.7 bits (89), Expect = 6e-04
Identities = 15/112 (13%), Positives = 29/112 (25%), Gaps = 4/112 (3%)
Query: 450 WVKPSEVLAQVSCNMVIPKATRPNEGLLF-INAELSPMASPQFETGRQTDTSVMINRFLE 508
++V+ S +P + + P A+ Q +
Sbjct: 30 SFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRESVQGRIGGRTHEI 89
Query: 509 KCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAH 560
+ L + + VD +V+ DG A A+A
Sbjct: 90 QRMIGRAMRTAVELT---KIGERTIWVDCDVIQADGGTATAAITGAFVAVAD 138
>d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 36.8 bits (84), Expect = 0.003
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 9/90 (10%)
Query: 472 PNEGLLFINAELSPMASPQFE-TGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKV 530
P+ L+ + ++ + + S + L + F+ +
Sbjct: 61 PDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQ--------LHPR 112
Query: 531 WNVRVDLNVLNYDGNLLGCCSIAALAALAH 560
+ + + VL DG C AA A+
Sbjct: 113 SQIDIYVQVLQADGGTYAACVNAATLAVLD 142
>d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus
subtilis [TaxId: 1423]}
Length = 151
Score = 36.4 bits (83), Expect = 0.004
Identities = 8/53 (15%), Positives = 18/53 (33%)
Query: 508 EKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAH 560
+ L ++ + + + +D +V+ DG A A+A
Sbjct: 87 TMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAI 139
>d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea
virus [TaxId: 11099]}
Length = 588
Score = 36.4 bits (84), Expect = 0.013
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 385 IEAGDMRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENGE 444
E G + G + G Q ++ K A + D++F S + +
Sbjct: 363 TEKGLGLKFANKGMQ--ILHEAGKPQKITEGEKMKVAYRFEDIEFCSH-TPVPVRWSDNT 419
Query: 445 AVWCPWVKPSEVLAQVSCNMVIP 467
+ + +L++++ +
Sbjct: 420 SSHMAGRDTAVILSKMATRLDSS 442
>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domains 1 and 4
{Streptomyces antibioticus [TaxId: 1890]}
Length = 137
Score = 34.4 bits (78), Expect = 0.014
Identities = 13/105 (12%), Positives = 30/105 (28%), Gaps = 2/105 (1%)
Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
+L + NM+ + + + P + G R +
Sbjct: 29 ILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGA--LA 86
Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAH 560
+ + EE + +R L +G+ A+ +L +
Sbjct: 87 ERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLN 131
>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 257
Score = 31.4 bits (71), Expect = 0.31
Identities = 10/45 (22%), Positives = 13/45 (28%)
Query: 301 KPKGYGVETPTSEPGYCETDMWDSDWDDDPEDFYYYRHQRRLSDP 345
+ + PG ET D DPE Q + P
Sbjct: 184 REAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKP 228
>d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 30.1 bits (67), Expect = 0.40
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 493 TGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSI 552
G R + E++ + ++ V L V++ G+LL CC
Sbjct: 60 IGLPGVAEKSRERLIRNT--------CEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLN 111
Query: 553 AALAALAH 560
AA AL
Sbjct: 112 AACMALVD 119
>d2cb2a1 d.58.4.17 (A:2-308) Sulfur oxygenase reductase SOR
{Acidianus ambivalens [TaxId: 2283]}
Length = 307
Score = 29.8 bits (67), Expect = 1.1
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 20/66 (30%)
Query: 389 DMRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSI----SAENGE 444
DM E T+R TF WK DW D + M +NW+ + + +
Sbjct: 63 DMTKESS--------TVRVLQYTF--WK------DWKDHEEMHRQNWSYLFRLCYSCASQ 106
Query: 445 AVWCPW 450
+W PW
Sbjct: 107 MIWGPW 112
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein
ThiS {Bacillus subtilis [TaxId: 1423]}
Length = 65
Score = 26.9 bits (60), Expect = 1.6
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 26 IIVNIGEDESILKSTTTLEQLLEEINF 52
+ +N G+D K T T++ LL
Sbjct: 2 LQLN-GKDVKWKKDTGTIQDLLASYQL 27
>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 275
Score = 29.4 bits (65), Expect = 1.6
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 292 KGFAEMAVTKPKGYGVETPTSEPGYCETDMWDSDWDDDPED 332
+ A + KG + PG+ TDM PE+
Sbjct: 204 RIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKATKSPEE 244
>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase
{Thermus thermophilus, TTHB020 [TaxId: 274]}
Length = 241
Score = 28.9 bits (64), Expect = 2.0
Identities = 9/43 (20%), Positives = 10/43 (23%)
Query: 304 GYGVETPTSEPGYCETDMWDSDWDDDPEDFYYYRHQRRLSDPS 346
GV PG +T M E R P
Sbjct: 168 RKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGRAGRPE 210
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 26.5 bits (59), Expect = 2.2
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 3 EFPVSNLEKSF-------VLSGILQNKVKKIIVNIGEDESILKSTTTLEQL 46
EFP L K F V++G + +IV + E+ IL S T+ +L
Sbjct: 1 EFPAQELRKYFKMGDHVKVIAGRFEGDT-GLIVRVEENFVILFSDLTMHEL 50
>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 237
Score = 28.5 bits (63), Expect = 2.6
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 293 GFAEMAVTKPKGYGVETPTSEPGYCETDMWDSDWDDDPEDFYYYRHQRRLSDP 345
G A + V PGY +TDM + + + + +R+ P
Sbjct: 154 GMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTP 206
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier
protein ThiS {Escherichia coli [TaxId: 562]}
Length = 65
Score = 25.8 bits (57), Expect = 4.5
Identities = 6/28 (21%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 25 KIIVNIGEDESILKSTTTLEQLLEEINF 52
+I+ N + + T+ +LLE+++
Sbjct: 1 QILFN-DQAMQC-AAGQTVHELLEQLDQ 26
>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase
{Comamonas testosteroni [TaxId: 285]}
Length = 253
Score = 27.6 bits (61), Expect = 5.0
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 302 PKGYGVETPTSEPGYCETDMWDSDWDDDPED 332
+GY + + P T M +
Sbjct: 171 KQGYAIRVNSIHPDGIYTPMMQASLPKGVSK 201
>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 297
Score = 27.7 bits (61), Expect = 5.3
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Query: 304 GYGVETPTSEPGYCETDMWDSDWDDDPEDFYYYRHQR----RLSDPS 346
G+ PG + ++ + F+ Q+ R+ P
Sbjct: 185 CSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPE 231
>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase
{Chlorobium tepidum [TaxId: 1097]}
Length = 240
Score = 27.4 bits (60), Expect = 5.6
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 292 KGFAEMAVTKPKGYGVETPTSEPGYCETDMWDSDWDD------DPED 332
+G E + V +PG T MW D+ PED
Sbjct: 165 RGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDEMQALMMMPED 211
>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer
{Caenorhabditis elegans [TaxId: 6239]}
Length = 250
Score = 27.5 bits (60), Expect = 6.4
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 303 KGYGVETPTSEPGYCETDMWDSDWDDDPED 332
K V PG+ +T++ + E
Sbjct: 191 KDDNVLVVNFCPGWVQTNLGGKNAALTVEQ 220
>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane
translocase subunit Tim10 {Human (Homo sapiens) [TaxId:
9606]}
Length = 65
Score = 25.1 bits (55), Expect = 6.4
Identities = 6/17 (35%), Positives = 8/17 (47%), Gaps = 2/17 (11%)
Query: 502 MINRFLEKCFKESKCID 518
M NR C + KC+
Sbjct: 9 MYNRMTSACHR--KCVP 23
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId:
1354]}
Length = 68
Score = 25.1 bits (55), Expect = 8.0
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 632 GVDSAYANLVNKTDRILLDEGEKDSGETKVKVEKVG 667
GV L + + DE + E + ++G
Sbjct: 27 GVKKVKVQLKKEKAVVKFDEANVQATEICQAINELG 62
>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane
translocase subunit Tim9 {Human (Homo sapiens) [TaxId:
9606]}
Length = 73
Score = 25.2 bits (55), Expect = 8.8
Identities = 5/21 (23%), Positives = 8/21 (38%), Gaps = 2/21 (9%)
Query: 498 DTSVMINRFLEKCFKESKCID 518
+ N+ E CF C+
Sbjct: 4 EFLGTYNKLTETCFL--DCVK 22
>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase
{Pseudomonas fragi [TaxId: 296]}
Length = 260
Score = 26.7 bits (58), Expect = 9.0
Identities = 7/48 (14%), Positives = 12/48 (25%)
Query: 304 GYGVETPTSEPGYCETDMWDSDWDDDPEDFYYYRHQRRLSDPSANINM 351
G G+ PG+ T + + E + S
Sbjct: 175 GQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPS 222
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.391
Gapped
Lambda K H
0.267 0.0462 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,800,940
Number of extensions: 132052
Number of successful extensions: 426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 35
Length of query: 756
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 664
Effective length of database: 1,144,436
Effective search space: 759905504
Effective search space used: 759905504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.0 bits)