Query psy9089
Match_columns 200
No_of_seqs 120 out of 856
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 18:35:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f0a_B Protein WNT-8, XWNT-8; 100.0 1.2E-63 4.1E-68 443.9 7.2 155 1-181 155-316 (316)
2 2oq9_A Minicollagen-5; disulfi 27.8 20 0.00067 19.8 0.8 12 133-144 14-25 (26)
3 2lfw_B NEPR anti sigma factor; 25.5 23 0.00079 23.9 1.0 17 26-42 25-41 (62)
4 1zso_A Hypothetical protein; s 22.2 56 0.0019 25.8 2.8 25 159-184 31-55 (164)
5 3tvj_I Protease inhibitor SGPI 20.1 29 0.00099 21.2 0.5 16 4-19 19-36 (38)
6 4a1x_C CP5-46-A peptide; hydro 18.9 52 0.0018 18.0 1.3 12 97-108 4-15 (26)
7 3fgh_A Transcription factor A, 17.6 40 0.0014 21.7 0.9 23 19-41 36-63 (67)
8 3nm9_A HMG-D, high mobility gr 16.5 42 0.0014 22.0 0.8 23 19-41 41-66 (73)
9 1ckt_A High mobility group 1 p 15.9 48 0.0017 21.4 1.0 15 26-40 53-67 (71)
10 2cto_A Novel protein; high mob 15.4 51 0.0018 23.4 1.1 23 20-42 50-77 (93)
No 1
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=100.00 E-value=1.2e-63 Score=443.88 Aligned_cols=155 Identities=33% Similarity=0.766 Sum_probs=130.3
Q ss_pred CcccceeccccCCcccceecccCCChHHHHHHHHHhhhhcceeeccCCCCCCCccCccccccccccccccCCCCCCCCcc
Q psy9089 1 MVEKCKCHGMSGSCEIRTCWHSAPSFRTVGEALKKKFSHAIRVDQSNMGNGMPLVLPEYTRRYDNTLRKIRPHRGNNDKN 80 (200)
Q Consensus 1 m~~~CKCHGvSGSC~~kTCW~~lp~Fr~IG~~Lk~kY~~A~~V~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 80 (200)
|+++||||||||||++||||++||+|++||+.||+|||+|++|.+.+....... . .....+....
T Consensus 155 m~~~CKCHGvSGSCt~KTCW~~lp~Fr~VG~~LK~kyd~A~~V~~~~~~~~~~~-------~----~~~~~~~~~~---- 219 (316)
T 4f0a_B 155 MKRTCKCHGISGSCSIQTCWLQLAEFRDIGNHLKIKHDQALKLEMDKRKMRSGN-------S----ADNRGAIADA---- 219 (316)
T ss_dssp CEEEEEECSGGGCTTSEEEEEECCCHHHHHHHHHHHHHTCEECCC------------------------CHHHHHH----
T ss_pred CeeeeecCCccccccceehcccCCCHHHHHHHHHHHhhhheEeeeccccccccc-------c----cccccccccc----
Confidence 788999999999999999999999999999999999999999976543110000 0 0000000000
Q ss_pred CcccCCCCCccCCCCCCceEEecCCCCCcccCCCCCCCCCCCcccCCCCCcCC-----CCccccc--cCCCceEEEEEEE
Q psy9089 81 NRMKRGGPRKHLNRMKTELIYYQKSPNYCERDNDVDFPGTAGRYCNRTSAFAV-----DNCESLC--CGRGYNLRREVKN 153 (200)
Q Consensus 81 ~~~~~~~~~~~~~p~~~dLVYle~SPdyC~~d~~~Gs~GT~GR~Cn~~s~~~~-----~~C~~LC--CGRGy~t~~~~~~ 153 (200)
.++ |+++||||||+|||||++|+.+||+||+||+||++|. +. |+|++|| |||||+|++++++
T Consensus 220 --~k~--------p~~~dLVYle~SPdfC~~n~~~Gs~GT~GR~Cn~tS~-g~s~~~~dgCdlLC~~CGRGy~t~~~~~~ 288 (316)
T 4f0a_B 220 --FSS--------VAGSELIFLEDSPDYCLKNISLGLQGTEGRECLQSGK-NLSQWERRSCKRLCTDCGLRVEEKKTEII 288 (316)
T ss_dssp --HHT--------SCSSSCEECSCCCCTTSEETTTTEECSTTCEECCCCT-TCCHHHHTHHHHHTGGGTCCEEEEEEEEE
T ss_pred --cCC--------CCCCCeEEeCCCCcccccCCCCCCCCCCCcccCCCCC-CCcCCCCCCHHHHHHhcCCceeEEEEEEE
Confidence 134 7899999999999999999999999999999999999 88 9999999 9999999999999
Q ss_pred EeeCcEEEeEeEEECcccceEEEEEEec
Q psy9089 154 LKCKCKFKWCCTVECETCRVEEWNAVCM 181 (200)
Q Consensus 154 ~~C~CkF~WCC~V~C~~C~~~~~~~~Ck 181 (200)
|+|||||||||+|+|++|.+++++|+|.
T Consensus 289 erC~CkF~WCC~V~C~~C~~~~~~~~C~ 316 (316)
T 4f0a_B 289 SSCNCKFHWCCTVKCEQCKQVVIKHFCA 316 (316)
T ss_dssp EECSCBCCSSSCCBCCEEEEEEEEEEEC
T ss_pred EeeCCEEEeeeEEECCcCCeEEEEEEeC
Confidence 9999999999999999999999999994
No 2
>2oq9_A Minicollagen-5; disulfide, CIS-proline, nematocyst, non-canonical CRD, cysteine-rich domain, structural protein; NMR {Synthetic}
Probab=27.83 E-value=20 Score=19.75 Aligned_cols=12 Identities=42% Similarity=1.276 Sum_probs=9.4
Q ss_pred CCCccccccCCC
Q psy9089 133 VDNCESLCCGRG 144 (200)
Q Consensus 133 ~~~C~~LCCGRG 144 (200)
..+|..-||||.
T Consensus 14 mascapqccgr~ 25 (26)
T 2oq9_A 14 MASCAPQCCGRX 25 (26)
T ss_dssp CTTTTTTTTCC-
T ss_pred HHhccHHhhcCC
Confidence 467999999985
No 3
>2lfw_B NEPR anti sigma factor; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=25.46 E-value=23 Score=23.93 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhhhhcce
Q psy9089 26 FRTVGEALKKKFSHAIR 42 (200)
Q Consensus 26 Fr~IG~~Lk~kY~~A~~ 42 (200)
=.+||..|+..|+.++.
T Consensus 25 ~~~Ig~~LR~~Yd~vv~ 41 (62)
T 2lfw_B 25 DRDMGAALRSAYQKTIE 41 (62)
T ss_dssp STTHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 36999999999998765
No 4
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=22.21 E-value=56 Score=25.81 Aligned_cols=25 Identities=12% Similarity=0.334 Sum_probs=20.0
Q ss_pred EEEeEeEEECcccceEEEEEEecCCC
Q psy9089 159 KFKWCCTVECETCRVEEWNAVCMERG 184 (200)
Q Consensus 159 kF~WCC~V~C~~C~~~~~~~~Ck~~~ 184 (200)
.|.|+-.|+|..|.+.... ++..+.
T Consensus 31 ~~~~~fkvkC~~C~E~~~k-v~v~~~ 55 (164)
T 1zso_A 31 EYLWIFNIRDSTSSLTRDN-IQFRKT 55 (164)
T ss_dssp TCCEEEEEEETTSSCEEEE-EEECTT
T ss_pred CcEEEEEEEECCCCcccCC-EEEcch
Confidence 4899999999999998876 554443
No 5
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A
Probab=20.09 E-value=29 Score=21.23 Aligned_cols=16 Identities=38% Similarity=0.966 Sum_probs=13.7
Q ss_pred cceec--cccCCccccee
Q psy9089 4 KCKCH--GMSGSCEIRTC 19 (200)
Q Consensus 4 ~CKCH--GvSGSC~~kTC 19 (200)
.|.|- |.+.+|+.|.|
T Consensus 19 tC~C~~dG~~a~CT~k~C 36 (38)
T 3tvj_I 19 TCRCGSDGKSAVCTKLWC 36 (38)
T ss_dssp EEEECTTSSCEEEECCEE
T ss_pred eeECCCCCceeEeecccC
Confidence 57886 88999999987
No 6
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=18.89 E-value=52 Score=18.04 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=10.3
Q ss_pred CceEEecCCCCC
Q psy9089 97 TELIYYQKSPNY 108 (200)
Q Consensus 97 ~dLVYle~SPdy 108 (200)
..||||-+.|.|
T Consensus 4 grlvylldgpgy 15 (26)
T 4a1x_C 4 GRLVYLLDGPGY 15 (26)
T ss_pred ceEEEEecCCCC
Confidence 469999999987
No 7
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=17.64 E-value=40 Score=21.70 Aligned_cols=23 Identities=4% Similarity=0.358 Sum_probs=17.9
Q ss_pred ecccCCC-----hHHHHHHHHHhhhhcc
Q psy9089 19 CWHSAPS-----FRTVGEALKKKFSHAI 41 (200)
Q Consensus 19 CW~~lp~-----Fr~IG~~Lk~kY~~A~ 41 (200)
-|+.|++ |.+.+..++++|+..+
T Consensus 36 ~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~ 63 (67)
T 3fgh_A 36 NWKNLSDSEKELYIQHAKEDETRYHNEM 63 (67)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888884 7788888888888654
No 8
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=16.53 E-value=42 Score=22.03 Aligned_cols=23 Identities=13% Similarity=0.450 Sum_probs=16.2
Q ss_pred ecccCC---ChHHHHHHHHHhhhhcc
Q psy9089 19 CWHSAP---SFRTVGEALKKKFSHAI 41 (200)
Q Consensus 19 CW~~lp---~Fr~IG~~Lk~kY~~A~ 41 (200)
-|+.|+ .|.+.+..++++|....
T Consensus 41 ~Wk~ls~K~~y~~~A~~~k~~y~~~~ 66 (73)
T 3nm9_A 41 LWRAMKDKSEWEAKAAKAKDDYDRAV 66 (73)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 477777 46677777888887654
No 9
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=15.88 E-value=48 Score=21.37 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=7.5
Q ss_pred hHHHHHHHHHhhhhc
Q psy9089 26 FRTVGEALKKKFSHA 40 (200)
Q Consensus 26 Fr~IG~~Lk~kY~~A 40 (200)
|.+.+..++++|...
T Consensus 53 y~~~A~~~k~~y~~e 67 (71)
T 1ckt_A 53 FEDMAKADKARYERE 67 (71)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555443
No 10
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.45 E-value=51 Score=23.40 Aligned_cols=23 Identities=4% Similarity=0.175 Sum_probs=19.1
Q ss_pred cccCC-----ChHHHHHHHHHhhhhcce
Q psy9089 20 WHSAP-----SFRTVGEALKKKFSHAIR 42 (200)
Q Consensus 20 W~~lp-----~Fr~IG~~Lk~kY~~A~~ 42 (200)
|+.|+ +|.+.+..||++|+..+-
T Consensus 50 Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 50 WALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 88887 588999999999997753
Done!