Query psy9089
Match_columns 200
No_of_seqs 120 out of 856
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 18:35:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9089.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9089hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gl1i_ g.4.1.1 (I:) Protease 58.4 1.2 8.5E-05 25.1 0.3 16 4-19 15-32 (34)
2 d1tv0a_ g.9.1.1 (A:) Defensin- 49.3 0.63 4.6E-05 25.6 -1.8 25 141-165 6-30 (32)
3 d1nekb2 d.15.4.2 (B:1-106) Suc 13.5 26 0.0019 23.8 0.8 11 8-18 57-67 (106)
4 d1nbja_ g.3.3.2 (A:) Cycloviol 12.7 28 0.0021 18.4 0.6 13 12-24 18-30 (30)
5 d1o9aa1 g.27.1.1 (A:17-60) Fib 12.1 32 0.0024 20.1 0.8 10 3-12 27-36 (44)
6 d2et1a1 b.82.1.2 (A:1-201) Ger 11.5 54 0.0039 24.4 2.2 26 103-128 2-29 (201)
7 d1x6oa2 b.40.4.5 (A:87-165) C- 11.4 61 0.0044 21.1 2.1 20 22-41 37-56 (79)
8 d1i11a_ a.21.1.1 (A:) Sox-5 {M 10.4 57 0.0042 19.7 1.7 21 19-39 40-65 (70)
9 d2lefa_ a.21.1.1 (A:) Lymphoid 10.0 58 0.0043 20.5 1.7 21 20-40 41-66 (86)
10 d1dfsa_ g.46.1.1 (A:) Metallot 10.0 17 0.0012 19.5 -1.0 11 163-173 6-16 (31)
No 1
>d1gl1i_ g.4.1.1 (I:) Protease inhibitor PMP-C {Migratory locust (Locusta migratoria) [TaxId: 7004]}
Probab=58.38 E-value=1.2 Score=25.06 Aligned_cols=16 Identities=38% Similarity=1.335 Sum_probs=13.7
Q ss_pred ccee--ccccCCccccee
Q psy9089 4 KCKC--HGMSGSCEIRTC 19 (200)
Q Consensus 4 ~CKC--HGvSGSC~~kTC 19 (200)
.|+| .|-|++|+.|.|
T Consensus 15 tcrc~s~gksaactlkac 32 (34)
T d1gl1i_ 15 TCRCGADGKSAACTLKAC 32 (34)
T ss_dssp EEEECTTSSCEEEECCCC
T ss_pred eeeecCCCcccceeeccC
Confidence 4777 789999999987
No 2
>d1tv0a_ g.9.1.1 (A:) Defensin-related cryptdin 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.27 E-value=0.63 Score=25.61 Aligned_cols=25 Identities=32% Similarity=0.765 Sum_probs=17.0
Q ss_pred cCCCceEEEEEEEEeeCcEEEeEeE
Q psy9089 141 CGRGYNLRREVKNLKCKCKFKWCCT 165 (200)
Q Consensus 141 CGRGy~t~~~~~~~~C~CkF~WCC~ 165 (200)
|-.|+-.+-+.+.-.|.=+|.+||+
T Consensus 6 crkghckrgervrgtcgirflyccp 30 (32)
T d1tv0a_ 6 CRKGHCKRGERVRGTCGIRFLYCCP 30 (32)
T ss_dssp EEESCCSSCEECSSCSSSSEEEECC
T ss_pred EccCcccCCcEeeeecceeEEEEcC
Confidence 4445444445566788889999986
No 3
>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.50 E-value=26 Score=23.83 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=9.9
Q ss_pred ccccCCcccce
Q psy9089 8 HGMSGSCEIRT 18 (200)
Q Consensus 8 HGvSGSC~~kT 18 (200)
||+-|||+|+.
T Consensus 57 ~giCGsCam~I 67 (106)
T d1nekb2 57 EGVCGSDGLNM 67 (106)
T ss_dssp SSCSCTTEEEE
T ss_pred CCCCCcceEEE
Confidence 79999999986
No 4
>d1nbja_ g.3.3.2 (A:) Cycloviolacin O1 {Plant (Viola odorata) [TaxId: 97441]}
Probab=12.65 E-value=28 Score=18.44 Aligned_cols=13 Identities=38% Similarity=0.968 Sum_probs=10.9
Q ss_pred CCcccceecccCC
Q psy9089 12 GSCEIRTCWHSAP 24 (200)
Q Consensus 12 GSC~~kTCW~~lp 24 (200)
-||+-|.|+..+|
T Consensus 18 c~c~~kvcyn~~p 30 (30)
T d1nbja_ 18 CSCSNRVCYNGIP 30 (30)
T ss_dssp CEEETTEEESSCC
T ss_pred ccccCceeecCCC
Confidence 4788899999887
No 5
>d1o9aa1 g.27.1.1 (A:17-60) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.10 E-value=32 Score=20.06 Aligned_cols=10 Identities=40% Similarity=0.690 Sum_probs=8.0
Q ss_pred ccceeccccC
Q psy9089 3 EKCKCHGMSG 12 (200)
Q Consensus 3 ~~CKCHGvSG 12 (200)
..|.|+|.|.
T Consensus 27 l~CTC~Gg~~ 36 (44)
T d1o9aa1 27 LVCTCYGGSR 36 (44)
T ss_dssp EEEEECSSTT
T ss_pred EEEEEccCcc
Confidence 4689999983
No 6
>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=11.54 E-value=54 Score=24.41 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=18.6
Q ss_pred cCCC--CCcccCCCCCCCCCCCcccCCC
Q psy9089 103 QKSP--NYCERDNDVDFPGTAGRYCNRT 128 (200)
Q Consensus 103 e~SP--dyC~~d~~~Gs~GT~GR~Cn~~ 128 (200)
|++| |||..|.......+.|-.|.+.
T Consensus 2 dp~~lqdfcvad~~~~~~~~~g~~ck~~ 29 (201)
T d2et1a1 2 DPDPLQDFCVADLDGKAVSVNGHTCKPM 29 (201)
T ss_dssp CCCCSSSCCCBCCCTTSCCCSSCCBCCG
T ss_pred CCcccceeEeecCCCCccccCCcccCCh
Confidence 4556 8999987654456789999653
No 7
>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}
Probab=11.38 E-value=61 Score=21.09 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=16.9
Q ss_pred cCCChHHHHHHHHHhhhhcc
Q psy9089 22 SAPSFRTVGEALKKKFSHAI 41 (200)
Q Consensus 22 ~lp~Fr~IG~~Lk~kY~~A~ 41 (200)
.||+..++|..|+..|+.-.
T Consensus 37 kLP~d~elg~~I~~~f~~gk 56 (79)
T d1x6oa2 37 DMPPDPALATQIKEQFDSGK 56 (79)
T ss_dssp BCCSCHHHHHHHHHHHHTTC
T ss_pred CCCCchHHHHHHHHHHhCCC
Confidence 48888999999999998633
No 8
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.44 E-value=57 Score=19.73 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=14.4
Q ss_pred ecccCC-----ChHHHHHHHHHhhhh
Q psy9089 19 CWHSAP-----SFRTVGEALKKKFSH 39 (200)
Q Consensus 19 CW~~lp-----~Fr~IG~~Lk~kY~~ 39 (200)
-|+.|+ .|.+.+..++++|..
T Consensus 40 ~Wk~ls~~eK~~y~~~A~~~k~~~~~ 65 (70)
T d1i11a_ 40 RWKAMTNLEKQPYYEEQARLSKQHLE 65 (70)
T ss_dssp HHTTSCSGGGHHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 477777 466777777777753
No 9
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.99 E-value=58 Score=20.54 Aligned_cols=21 Identities=10% Similarity=0.381 Sum_probs=16.7
Q ss_pred cccCC-----ChHHHHHHHHHhhhhc
Q psy9089 20 WHSAP-----SFRTVGEALKKKFSHA 40 (200)
Q Consensus 20 W~~lp-----~Fr~IG~~Lk~kY~~A 40 (200)
|+.|| .|.+.+..++++|...
T Consensus 41 Wk~ls~~eK~~y~~~A~~~k~~~~~~ 66 (86)
T d2lefa_ 41 WHALSREEQAKYYELARKERQLHMQL 66 (86)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888 4778888888888755
No 10
>d1dfsa_ g.46.1.1 (A:) Metallothionein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.97 E-value=17 Score=19.49 Aligned_cols=11 Identities=45% Similarity=1.419 Sum_probs=9.1
Q ss_pred EeEEECcccce
Q psy9089 163 CCTVECETCRV 173 (200)
Q Consensus 163 CC~V~C~~C~~ 173 (200)
||+|.|.+|.+
T Consensus 6 ccpv~c~kcaq 16 (31)
T d1dfsa_ 6 CCPVGCSKCAQ 16 (31)
T ss_dssp SSCSSCSSSSS
T ss_pred cCCccHHHHhc
Confidence 78999988864
Done!