RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9089
(200 letters)
>gnl|CDD|215724 pfam00110, wnt, wnt family. Wnt genes have been identified in
vertebrates and invertebrates but not in plants,
unicellular eukaryotes or prokaryotes. In humans, 19 WNT
proteins are known. Because of their insolubility little
is known about Wnt protein structure, but all have 23 or
24 Cys residues whose spacing is highly conserved.
Signal transduction by Wnt proteins (including the
Wnt/beta-catenin, the Wnt/Ca++, and the Wnt/polarity
pathway) is mediated by receptors of the Frizzled and
LDL-receptor-related protein (LRP) families.
Length = 308
Score = 185 bits (471), Expect = 2e-58
Identities = 70/180 (38%), Positives = 90/180 (50%), Gaps = 31/180 (17%)
Query: 1 MVEKCKCHGMSGSCEIRTCWHSAPSFRTVGEALKKKFSHAIRVDQSNMGNGMPLVLPEYT 60
M +CKCHG+SGSC ++TCW P FR VG+ LK+K+ AI+V
Sbjct: 159 MKTECKCHGVSGSCTLKTCWKQLPDFREVGDLLKEKYDGAIKV----------------- 201
Query: 61 RRYDNTLRKIRPHRGNNDKNNRMKRGGPRKHLNRMKTELIYYQKSPNYCERDNDVDFPGT 120
NN R K T+L+Y + SP+YCER+ + GT
Sbjct: 202 -------------EVNNRGKRRRLVRKNPKSKPPTSTDLVYLEDSPDYCERNPSLGSLGT 248
Query: 121 AGRYCNRTSAFAVDNCESLCCGRGYNLRREVKNLKCKCKFKWCCTVECETCRVEEWNAVC 180
GR CN+TS+ D C+ LCCGRGYN R V +C CKF WCC V+C+TCR C
Sbjct: 249 RGRECNKTSS-GTDGCDLLCCGRGYNTRTVVVVERCNCKFHWCCYVKCKTCRERVEVYTC 307
>gnl|CDD|128408 smart00097, WNT1, found in Wnt-1.
Length = 305
Score = 157 bits (400), Expect = 1e-47
Identities = 65/180 (36%), Positives = 90/180 (50%), Gaps = 31/180 (17%)
Query: 1 MVEKCKCHGMSGSCEIRTCWHSAPSFRTVGEALKKKFSHAIRVDQSNMGNGMPLVLPEYT 60
M +CKCHG+SGSC ++TCW P FR VG+ LK+K+ A V+ G V P+ +
Sbjct: 156 MKRECKCHGVSGSCTVKTCWLQLPDFRKVGDYLKEKYDGASEVEVDKRGTNKAPV-PKNS 214
Query: 61 RRYDNTLRKIRPHRGNNDKNNRMKRGGPRKHLNRMKTELIYYQKSPNYCERDNDVDFPGT 120
+P +T+L+Y + SP++CE++ GT
Sbjct: 215 T--------FKPP---------------------TETDLVYLESSPDFCEKNPKTGSLGT 245
Query: 121 AGRYCNRTSAFAVDNCESLCCGRGYNLRREVKNLKCKCKFKWCCTVECETCRVEEWNAVC 180
GR CN+TS +D C+ LCCGRGYN R +C CKF WCC V+C+ CR C
Sbjct: 246 QGRQCNKTSK-GLDGCDLLCCGRGYNTRTVEVVERCNCKFHWCCYVKCKQCRETVEKHTC 304
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This
family contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 32.0 bits (73), Expect = 0.12
Identities = 14/73 (19%), Positives = 20/73 (27%), Gaps = 15/73 (20%)
Query: 7 CHGMSGSCEIRTCWHSAPSFRTVGEALKKKFSHAIRVDQSNMG-----NGMPLVLPEYTR 61
HG SA S+R + EAL + + D G P L +
Sbjct: 4 LHGA---------GGSAESWRPLAEALAAGY-RVLAPDLPGHGDSDGPPRTPYSLEDDAA 53
Query: 62 RYDNTLRKIRPHR 74
L +
Sbjct: 54 DLAALLDALGLGP 66
>gnl|CDD|233636 TIGR01916, F420_cofE, F420-0:gamma-glutamyl ligase. This model
represents an enzyme of coenzyme F(420) biosynthesis, as
catalyzed by MJ0768 of Methanococcus jannaschii and by
the N-terminal half of FbiB of Mycobacterium bovis
strain BCG. Note that only two glutamates are ligated in
M. jannaschii, but five to six in the Mycobacterium
lineage. In M. jannaschii, CofE catalyzes the
GTP-dependent addition of two L-glutamates [Biosynthesis
of cofactors, prosthetic groups, and carriers, Other].
Length = 243
Score = 29.3 bits (66), Expect = 1.3
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 43 VDQSNMGNGMPLVLPEYTRRYDNTLRKIR 71
+D+SN+GNG L+LPE D + KIR
Sbjct: 107 IDESNVGNGELLLLPE---DPDASAEKIR 132
>gnl|CDD|172345 PRK13815, PRK13815, ribosome-binding factor A; Provisional.
Length = 122
Score = 27.9 bits (62), Expect = 1.7
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 22 SAPSF--RTVGEALKKKFSHAI--RVDQSNMGNGMPLVLPEYTRRYDNTLRKIRPHRGNN 77
SA F + +G+ L+ +++ + + D+S EY R D+ L++I +
Sbjct: 68 SARGFIRKELGKVLRMRYAPELIFKYDESQ----------EYGNRIDSLLKEIGTEHDGD 117
Query: 78 DKNNR 82
D +
Sbjct: 118 DSEDS 122
>gnl|CDD|240153 cd05026, S-100Z, S-100Z: S-100Z domain found in proteins similar to
S100Z. S100Z is a member of the S100 domain family
within the EF-hand Ca2+-binding proteins superfamily.
Note that the S-100 hierarchy, to which this S-100Z
group belongs, contains only S-100 EF-hand domains,
other EF-hands have been modeled separately.S100
proteins exhibit unique patterns of tissue- and cell
type-specific expression and have been implicated in the
Ca2+-dependent regulation of diverse physiological
processes, including cell cycle regulation,
differentiation, growth, and metabolic control. S100Z is
normally expressed in various tissues, with its highest
level of expression being in spleen and leukocytes. The
function of S100Z remains unclear. Preliminary
structural data suggests that S100Z is homodimer,
however a heterodimer with S100P has been reported.
S100Z is capable of binding calcium ions. When calcium
binds to S110Z, the protein experiences a
conformational change, which exposes hydrophobic
surfaces on the protein. In comparison with their normal
tissue counterparts, S100Z gene expression appears to be
deregulated in some tumor tissues.
Length = 93
Score = 27.5 bits (61), Expect = 1.8
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 64 DNTLRKIRPHRGNNDKNNRMKRGGPRKHLNRMKTELIYYQKSPNYCER---------DND 114
D +R + G ++ +G ++ L R T+ + QK P ++ DN+
Sbjct: 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNE 69
Query: 115 VDF 117
VDF
Sbjct: 70 VDF 72
>gnl|CDD|130696 TIGR01635, tail_comp_S, phage virion morphogenesis (putative tail
completion) protein. This model describes protein S of
phage P2, suggested experimentally to act in tail
completion and stable head joining, and related proteins
from a number of phage [Mobile and extrachromosomal
element functions, Prophage functions].
Length = 144
Score = 27.9 bits (62), Expect = 2.1
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 78 DKNNRMKRGGPRKHLNRMKTELIYYQKSPNYCERDNDVDFPGTAGRY 124
K R K+G K L + + + ++ +Y V G RY
Sbjct: 56 KKKVRSKKGRIGKILKKFTQKRLMKSRTSDY---GLVVALIGARERY 99
>gnl|CDD|218698 pfam05695, DUF825, Plant protein of unknown function (DUF825).
This family consists of several plant proteins greater
than 1000 residues in length. The function of this
family is unknown.
Length = 1127
Score = 27.9 bits (62), Expect = 3.9
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 34 KKKFSHAIRVDQSNMGNGMPLVLPEYTRRYDNTLRKIRPHRGNNDKNNRMKRGGPRKHLN 93
KKKF + I ++ + N LVL ++ +I R NR K + N
Sbjct: 315 KKKFLNEIFNHRAELKNKSLLVLLPILEENESFFDRIIQKRVWISCGNRQKMVVFFSN-N 373
Query: 94 RMKT 97
RM+
Sbjct: 374 RMEA 377
>gnl|CDD|223228 COG0150, PurM, Phosphoribosylaminoimidazole (AIR) synthetase
[Nucleotide transport and metabolism].
Length = 345
Score = 27.2 bits (61), Expect = 6.1
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 20 WHSAPSFRTVGEALKKKFSHAIRVDQSNMGNGMPLVLPE 58
W P F+ + +A + R NMG GM L++PE
Sbjct: 273 WPPPPIFKWLQKAGNVEREEMYRT--FNMGVGMVLIVPE 309
>gnl|CDD|173548 PTZ00355, PTZ00355, Rhoptry-associated protein 2; Provisional.
Length = 400
Score = 27.1 bits (60), Expect = 8.0
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 72 PHRGNNDKNNRMKRGGPRKHLNRMKT-ELIYYQKSPN---YCERDNDVDFPGT 120
P RG ++ ++ KR G +K R + L+ + +CE+D ++ GT
Sbjct: 240 PARGTSNIISKRKRLGLKK---RSSSLSLLGPHNNNPIFAFCEKDGKEEYFGT 289
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.461
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,776,147
Number of extensions: 849501
Number of successful extensions: 594
Number of sequences better than 10.0: 1
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 18
Length of query: 200
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 108
Effective length of database: 6,857,034
Effective search space: 740559672
Effective search space used: 740559672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.4 bits)