RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9089
(200 letters)
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex,
frizzled, fatty acylation, glycosylation, signaling
protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus
laevis}
Length = 316
Score = 123 bits (308), Expect = 2e-34
Identities = 55/186 (29%), Positives = 80/186 (43%), Gaps = 31/186 (16%)
Query: 1 MVEKCKCHGMSGSCEIRTCWHSAPSFRTVGEALKKKFSHAIRVDQSNMGNGMPLVLPEYT 60
M CKCHG+SGSC I+TCW FR +G LK K A++++
Sbjct: 155 MKRTCKCHGISGSCSIQTCWLQLAEFRDIGNHLKIKHDQALKLEMDK------------- 201
Query: 61 RRYDNTLRKIRPHRGNNDKNNRMKRGGPRKHLNRMKTELIYYQKSPNYCERDNDVDFPGT 120
R R N +NR + +ELI+ + SP+YC ++ + GT
Sbjct: 202 ----------RKMRSGNSADNRGAI--ADAFSSVAGSELIFLEDSPDYCLKNISLGLQGT 249
Query: 121 AGRYCNRTS----AFAVDNCESLCC--GRGYNLRREVKNLKCKCKFKWCCTVECETCRVE 174
GR C ++ + +C+ LC G ++ C CKF WCCTV+CE C+
Sbjct: 250 EGRECLQSGKNLSQWERRSCKRLCTDCGLRVEEKKTEIISSCNCKFHWCCTVKCEQCKQV 309
Query: 175 EWNAVC 180
C
Sbjct: 310 VIKHFC 315
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM;
2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3
Length = 720
Score = 32.4 bits (74), Expect = 0.091
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 8 HGMSGSCEIRTCWHSAPSFRT 28
G G IR WH+A ++R
Sbjct: 81 WGHYGGLMIRLTWHAAGTYRI 101
Score = 27.7 bits (62), Expect = 2.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 9 GMSGSCEIRTCWHSAPSFRT 28
G+S S + T W SA ++R
Sbjct: 456 GLSISELVSTAWDSARTYRN 475
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG,
heme, hydrogen peroxide, iron, metal-binding, organic
radical; HET: HEM; 2.0A {Mycobacterium tuberculosis}
SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A*
Length = 740
Score = 30.8 bits (70), Expect = 0.31
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 8 HGMSGSCEIRTCWHSAPSFRT 28
+G G IR WH+A ++R
Sbjct: 95 YGHYGPLFIRMAWHAAGTYRI 115
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A
{Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3
Length = 731
Score = 30.0 bits (68), Expect = 0.48
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 8 HGMSGSCEIRTCWHSAPSFRT 28
+G G IR WHSA ++RT
Sbjct: 83 YGHYGPLFIRMAWHSAGTYRT 103
Score = 27.3 bits (61), Expect = 3.7
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 9 GMSGSCEIRTCWHSAPSFRT 28
+S S ++T W SA ++R
Sbjct: 457 DLSVSQLVKTAWASASTYRD 476
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.7
Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 50/148 (33%)
Query: 8 HGMSGSCEIRTCWHSAPSFRTVGEALKKKFSHAIRVDQSNMGNGM----------PLVLP 57
G+ GS +T + S+ + Q M + P +
Sbjct: 156 DGVLGSG--KTW--------VALDVCL---SYKV---QCKMDFKIFWLNLKNCNSPETVL 199
Query: 58 EYTRRYDNTLRKIRPHRGNNDKNNRMKRGGPRKHLNRMKTELIYYQKSPNYCER----DN 113
E L +I P+ +++ + ++ ++ EL KS Y
Sbjct: 200 E---MLQKLLYQIDPN--WTSRSDHSSN--IKLRIHSIQAELRRLLKSKPYENCLLVLL- 251
Query: 114 DVDFPGTAGRYCNRT--SAFAVDNCESL 139
+V N +AF + +C+ L
Sbjct: 252 NV---------QNAKAWNAFNL-SCKIL 269
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, STRU genomics of pathogenic protozoa
consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP:
b.166.1.1
Length = 164
Score = 27.2 bits (60), Expect = 2.4
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 151 VKNLKCKCKFKWCCTVECETCR-------VEEWNAVCMERGRGLSSPGQTWSF 196
VK L C ++ W + T + + + + RG ++ W+
Sbjct: 23 VKRLFCDDEYLWIFNIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTE 75
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB:
2ayq_A 1v53_A 1v5b_A
Length = 390
Score = 27.6 bits (62), Expect = 3.3
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 25/70 (35%)
Query: 29 VGEALKKKFSHAIRVDQSNMG------NGMPLVLPEYTR-----------------RYDN 65
V +A+ ++F H + +G G PL PE T ++D
Sbjct: 45 VLKAVAERFGHEFEFEYGLIGGAAIDEAGTPL--PEETLDVCRGSDAILLGAVGGPKWDQ 102
Query: 66 TLRKIRPHRG 75
++RP +G
Sbjct: 103 NPSELRPEKG 112
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini
hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A
{Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A*
3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A*
1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A*
Length = 748
Score = 26.2 bits (58), Expect = 9.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 8 HGMSGSCEIRTCWHSAPSFRT 28
G G IR HSA ++RT
Sbjct: 99 FGHYGGLFIRMAXHSAGTYRT 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.461
Gapped
Lambda K H
0.267 0.0430 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,128,787
Number of extensions: 177527
Number of successful extensions: 425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 41
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.7 bits)