RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9089
         (200 letters)



>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG
          {Synechococcus sp. pcc 7942 [TaxId: 1140]}
          Length = 294

 Score = 29.0 bits (64), Expect = 0.38
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 9  GMSGSCEIRTCWHSAPSFRT 28
          G+S S  + T W SA ++R 
Sbjct: 30 GLSISELVSTAWDSARTYRN 49


>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG
          {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 308

 Score = 27.8 bits (61), Expect = 0.84
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 9  GMSGSCEIRTCWHSAPSFRT 28
          G++ S  + T W +A +FR 
Sbjct: 34 GLTVSQLVSTAWAAASTFRG 53


>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 190

 Score = 26.8 bits (58), Expect = 1.3
 Identities = 11/126 (8%), Positives = 27/126 (21%), Gaps = 13/126 (10%)

Query: 61  RRYDNTLRKIRPHRGNNDKNNRMKRGGPRKHLNRMKTELIYYQKSPNYCERDNDVDFPGT 120
           + + +       H        R  R G     +         Q+     +     +F G 
Sbjct: 22  QEHSSIFGFSVSHT------TRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGN 75

Query: 121 AGRYCNRTSAFAVDNCESLCCGRGYNLRREVKNLKCKCKF-KWCCTVECETCRVEEWNAV 179
                                 R   L  +++ ++   K       +  +   ++     
Sbjct: 76  LYGTSKEA------VRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQR 129

Query: 180 CMERGR 185
              R  
Sbjct: 130 LRLRNT 135


>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 308

 Score = 26.7 bits (58), Expect = 1.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 9  GMSGSCEIRTCWHSAPSFRT 28
           +S S  ++T W SA ++R 
Sbjct: 34 DLSVSQLVKTAWASASTYRD 53


>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 285

 Score = 26.7 bits (58), Expect = 1.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 9  GMSGSCEIRTCWHSAPSFRT 28
          G++ S  + T W +A SFR 
Sbjct: 31 GLTVSQLVSTAWAAASSFRG 50


>d1zsoa1 b.166.1.1 (A:1-156) Hypothetical protein MAL13P1.257
           {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
          Length = 156

 Score = 26.2 bits (58), Expect = 1.9
 Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 1/33 (3%)

Query: 151 VKNLKCKCKFKWCCTVECETCRVEEWNAVCMER 183
           VK L C  ++ W   +   T      + +   +
Sbjct: 15  VKRLFCDDEYLWIFNIRDSTSS-LTRDNIQFRK 46


>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia
          pseudomallei [TaxId: 28450]}
          Length = 292

 Score = 25.9 bits (56), Expect = 3.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 9  GMSGSCEIRTCWHSAPSFRT 28
          G+S S  +   W SA +FR 
Sbjct: 27 GLSVSELVSVAWASASTFRG 46


>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG
          {Synechococcus sp. pcc 7942 [TaxId: 1140]}
          Length = 406

 Score = 25.4 bits (55), Expect = 6.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 8  HGMSGSCEIRTCWHSAPSFRT 28
           G  G   IR  WH+A ++R 
Sbjct: 61 WGHYGGLMIRLTWHAAGTYRI 81


>d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree
          (Hevea brasiliensis) [TaxId: 3981]}
          Length = 256

 Score = 24.8 bits (52), Expect = 7.1
 Identities = 5/41 (12%), Positives = 12/41 (29%)

Query: 20 WHSAPSFRTVGEALKKKFSHAIRVDQSNMGNGMPLVLPEYT 60
           H A  +  +   L+        +D +  G     +    +
Sbjct: 12 CHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGS 52


>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 87

 Score = 23.7 bits (51), Expect = 7.4
 Identities = 3/32 (9%), Positives = 10/32 (31%)

Query: 64 DNTLRKIRPHRGNNDKNNRMKRGGPRKHLNRM 95
              +++R  +   ++           H+  M
Sbjct: 49 GKKKKRLRVDKWWGNRKELATVRTICSHVQNM 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.461 

Gapped
Lambda     K      H
   0.267   0.0359    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 818,983
Number of extensions: 39684
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 26
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.4 bits)