Query psy9094
Match_columns 185
No_of_seqs 115 out of 607
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 18:44:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e20_C Eukaryotic peptide chai 100.0 2.2E-43 7.7E-48 314.3 10.4 183 2-185 201-417 (441)
2 1dt9_A ERF1, protein (eukaryot 100.0 4.1E-41 1.4E-45 299.5 10.3 184 2-185 196-410 (437)
3 3ir9_A Peptide chain release f 100.0 2.8E-37 9.7E-42 243.0 14.6 130 55-185 26-157 (166)
4 3obw_A Protein pelota homolog; 100.0 1.9E-34 6.4E-39 251.4 11.0 140 2-185 184-356 (364)
5 3mca_B Protein DOM34, elongati 100.0 2.1E-33 7.2E-38 246.8 10.9 141 2-185 180-363 (390)
6 3j15_A Protein pelota; ribosom 100.0 1.1E-33 3.8E-38 246.1 8.3 138 2-185 177-349 (357)
7 3oby_A Protein pelota homolog; 100.0 5.8E-33 2E-37 241.1 10.3 132 4-185 169-335 (352)
8 2vgn_A DOM34; translation term 100.0 2.6E-32 8.8E-37 239.6 13.2 141 2-185 186-369 (386)
9 3agj_B Protein pelota homolog; 100.0 5.7E-32 2E-36 235.4 9.4 141 2-185 171-344 (358)
10 2qi2_A Pelota, cell division p 100.0 1.3E-30 4.4E-35 226.0 9.5 126 4-185 174-331 (347)
11 3agk_A Peptide chain release f 100.0 1.9E-29 6.6E-34 220.2 14.6 138 2-185 193-363 (373)
12 1x52_A Pelota homolog, CGI-17; 99.9 5.5E-26 1.9E-30 170.7 7.8 93 55-185 18-110 (124)
13 2lbw_A H/ACA ribonucleoprotein 96.5 0.013 4.6E-07 42.7 8.4 64 71-177 16-79 (121)
14 1xbi_A 50S ribosomal protein L 96.2 0.012 4.1E-07 42.9 6.5 41 61-102 16-56 (120)
15 3j21_Z 50S ribosomal protein L 96.2 0.035 1.2E-06 38.9 8.6 69 64-177 5-74 (99)
16 3v7e_A Ribosome-associated pro 96.1 0.018 6.1E-07 39.2 6.6 66 67-177 4-69 (82)
17 2ale_A SNU13, NHP2/L7AE family 95.9 0.019 6.4E-07 42.8 6.5 70 64-177 22-91 (134)
18 3u5e_c L32, RP73, YL38, 60S ri 95.7 0.02 6.8E-07 40.7 5.7 31 71-101 18-48 (105)
19 3cpq_A 50S ribosomal protein L 95.7 0.017 5.9E-07 41.4 5.3 36 65-101 12-47 (110)
20 2xzm_U Ribosomal protein L7AE 95.7 0.073 2.5E-06 39.1 8.8 63 72-177 21-83 (126)
21 1vq8_F 50S ribosomal protein L 95.7 0.027 9.1E-07 40.9 6.4 31 72-102 26-56 (120)
22 3o85_A Ribosomal protein L7AE; 95.7 0.032 1.1E-06 40.8 6.7 31 72-102 28-58 (122)
23 3on1_A BH2414 protein; structu 95.6 0.028 9.4E-07 39.6 6.1 64 70-177 13-76 (101)
24 3iz5_f 60S ribosomal protein L 95.6 0.089 3E-06 37.9 8.7 69 64-177 16-85 (112)
25 2fc3_A 50S ribosomal protein L 95.5 0.026 8.8E-07 41.3 5.8 31 72-102 25-55 (124)
26 3v7q_A Probable ribosomal prot 95.5 0.034 1.2E-06 39.1 6.3 64 70-177 14-77 (101)
27 2aif_A Ribosomal protein L7A; 95.5 0.052 1.8E-06 40.3 7.5 70 64-177 31-100 (135)
28 4a18_G RPL30; ribosome, eukary 95.5 0.018 6E-07 40.9 4.5 62 72-177 19-81 (104)
29 1rlg_A 50S ribosomal protein L 95.3 0.03 1E-06 40.6 5.5 31 72-102 24-54 (119)
30 1w41_A 50S ribosomal protein L 95.3 0.056 1.9E-06 37.9 6.7 69 64-177 6-75 (101)
31 2jnb_A NHP2-like protein 1; sp 93.6 0.033 1.1E-06 42.1 2.3 38 65-103 41-78 (144)
32 3jyw_G 60S ribosomal protein L 92.1 0.23 8E-06 35.8 5.0 65 70-177 20-84 (113)
33 3u5c_M 40S ribosomal protein S 90.7 0.4 1.4E-05 36.0 5.2 72 61-176 27-100 (143)
34 3vi6_A 60S ribosomal protein L 90.6 1.2 4E-05 32.5 7.6 32 71-102 23-54 (125)
35 2zkr_f 60S ribosomal protein L 90.4 0.32 1.1E-05 40.2 4.7 32 71-102 131-162 (266)
36 3pwf_A Rubrerythrin; non heme 88.3 0.27 9.4E-06 37.8 2.8 63 61-141 101-163 (170)
37 3izc_H 60S ribosomal protein R 85.4 1.2 4.2E-05 36.4 5.2 30 73-102 129-158 (256)
38 2lcq_A Putative toxin VAPC6; P 84.1 1.1 3.9E-05 33.6 4.3 53 82-142 106-159 (165)
39 2kdx_A HYPA, hydrogenase/ureas 81.8 0.73 2.5E-05 33.1 2.3 26 107-140 73-99 (119)
40 3iz5_H 60S ribosomal protein L 81.2 3.1 0.00011 34.0 6.0 61 72-175 124-184 (258)
41 4a17_F RPL7A, 60S ribosomal pr 80.9 4.7 0.00016 33.0 7.0 60 73-175 122-181 (255)
42 3a43_A HYPD, hydrogenase nicke 79.3 1 3.5E-05 33.4 2.3 11 107-117 70-80 (139)
43 1lko_A Rubrerythrin all-iron(I 76.2 2 6.8E-05 33.3 3.3 46 81-141 136-181 (191)
44 1gz0_A Hypothetical tRNA/RRNA 74.0 6.1 0.00021 31.8 5.9 28 74-101 12-41 (253)
45 3lhk_A Putative DNA binding pr 73.8 2.6 9E-05 31.3 3.4 59 79-179 54-114 (154)
46 2kg4_A Growth arrest and DNA-d 72.6 9.7 0.00033 29.1 6.3 75 60-177 21-102 (165)
47 3ilx_A First ORF in transposon 69.3 3.7 0.00013 30.1 3.2 21 79-99 51-71 (143)
48 3bvp_A INT, TP901-1 integrase; 69.3 1.8 6.2E-05 31.3 1.5 65 79-182 59-127 (138)
49 3guv_A Site-specific recombina 66.0 5.1 0.00018 29.7 3.5 51 79-170 61-114 (167)
50 3g13_A Putative conjugative tr 65.9 4.5 0.00015 30.0 3.2 21 79-99 63-83 (169)
51 1twf_L ABC10-alpha, DNA-direct 65.5 3.1 0.00011 27.3 1.9 30 105-141 26-55 (70)
52 3nk6_A 23S rRNA methyltransfer 65.5 15 0.0005 30.1 6.4 28 74-101 34-62 (277)
53 1yuz_A Nigerythrin; rubrythrin 64.2 3.7 0.00013 32.2 2.5 26 107-141 171-196 (202)
54 1vq8_Z 50S ribosomal protein L 61.7 4.2 0.00014 27.5 2.0 28 107-140 27-54 (83)
55 3h0g_L DNA-directed RNA polyme 59.4 4.8 0.00016 25.9 1.9 32 106-144 20-51 (63)
56 1gh9_A 8.3 kDa protein (gene M 59.2 4.9 0.00017 26.4 2.0 33 107-147 4-36 (71)
57 1qyp_A RNA polymerase II; tran 56.0 6.4 0.00022 24.2 2.0 35 107-141 15-53 (57)
58 1ipa_A RRMH, RNA 2'-O-ribose m 53.4 18 0.00062 29.4 5.0 28 74-101 28-56 (274)
59 3nkl_A UDP-D-quinovosamine 4-d 50.4 29 0.00098 24.2 5.2 56 74-172 48-103 (141)
60 1qxf_A GR2, 30S ribosomal prot 49.7 17 0.00059 23.5 3.3 29 107-140 7-35 (66)
61 1tfi_A Transcriptional elongat 49.4 5.4 0.00018 24.3 0.8 34 108-141 10-47 (50)
62 2apo_B Ribosome biogenesis pro 49.0 8.4 0.00029 24.5 1.8 25 108-144 7-31 (60)
63 2gmg_A Hypothetical protein PF 49.0 6.2 0.00021 27.9 1.2 33 94-141 62-94 (105)
64 6rxn_A Rubredoxin; electron tr 48.7 14 0.00049 22.0 2.7 32 107-140 4-39 (46)
65 3pkz_A Recombinase SIN; small 48.4 3.4 0.00012 29.3 -0.2 18 152-169 76-93 (124)
66 1pqv_S STP-alpha, transcriptio 47.7 7.6 0.00026 32.4 1.8 35 108-142 269-307 (309)
67 3po3_S Transcription elongatio 47.4 7.3 0.00025 30.0 1.5 35 108-142 138-176 (178)
68 4ayb_P DNA-directed RNA polyme 44.6 9.4 0.00032 23.1 1.4 30 107-140 3-32 (48)
69 2con_A RUH-035 protein, NIN on 42.3 18 0.00062 24.2 2.7 27 105-140 13-39 (79)
70 3j20_W 30S ribosomal protein S 41.9 26 0.00089 22.4 3.3 29 107-140 15-43 (63)
71 3v2d_5 50S ribosomal protein L 41.5 13 0.00044 23.5 1.8 20 108-138 31-50 (60)
72 3gdz_A Arginyl-tRNA synthetase 40.9 20 0.00067 25.0 2.9 28 9-38 59-86 (109)
73 1zma_A Bacterocin transport ac 40.0 78 0.0027 20.8 5.9 30 60-92 2-31 (118)
74 3cc2_Z 50S ribosomal protein L 39.2 15 0.00052 26.4 2.0 27 107-139 60-86 (116)
75 3h0g_I DNA-directed RNA polyme 38.7 13 0.00044 26.3 1.6 35 107-141 72-110 (113)
76 3j20_Y 30S ribosomal protein S 37.7 20 0.00067 21.7 2.1 26 108-139 20-45 (50)
77 4esj_A Type-2 restriction enzy 37.5 9.7 0.00033 30.9 0.8 38 108-148 35-73 (257)
78 1pft_A TFIIB, PFTFIIBN; N-term 36.7 14 0.00046 22.0 1.2 28 108-140 6-33 (50)
79 2kn9_A Rubredoxin; metalloprot 35.6 28 0.00095 23.4 2.8 31 107-140 27-69 (81)
80 2gm5_A Transposon gamma-delta 35.2 27 0.00092 25.0 2.9 28 152-179 77-108 (139)
81 2zjr_Z 50S ribosomal protein L 34.9 21 0.00072 22.5 2.0 21 108-139 31-51 (60)
82 2aus_D NOP10, ribosome biogene 32.9 19 0.00066 22.8 1.5 24 108-143 6-29 (60)
83 1l8d_A DNA double-strand break 32.8 20 0.0007 24.7 1.9 9 134-142 50-58 (112)
84 1dx8_A Rubredoxin; electron tr 32.5 39 0.0013 21.9 3.0 10 131-140 40-49 (70)
85 1ltl_A DNA replication initiat 32.3 37 0.0013 27.4 3.6 33 106-140 133-165 (279)
86 3u5c_b RP61, YS20, 40S ribosom 31.8 51 0.0017 22.2 3.6 43 107-169 34-76 (82)
87 2v3b_B Rubredoxin 2, rubredoxi 31.4 27 0.00093 21.5 2.0 11 131-141 36-46 (55)
88 1yk4_A Rubredoxin, RD; electro 31.3 48 0.0016 20.1 3.1 11 130-140 34-44 (52)
89 2xzm_6 RPS27E; ribosome, trans 31.3 25 0.00084 23.7 1.9 42 107-168 32-73 (81)
90 2k2d_A Ring finger and CHY zin 31.0 47 0.0016 21.9 3.3 36 97-140 27-64 (79)
91 3irb_A Uncharacterized protein 30.5 25 0.00087 25.8 2.1 37 81-140 34-70 (145)
92 1e8j_A Rubredoxin; iron-sulfur 30.3 34 0.0012 20.8 2.3 10 131-140 36-45 (52)
93 1x7o_A Avirb, rRNA methyltrans 30.1 41 0.0014 27.4 3.5 29 74-102 40-69 (287)
94 3iz6_X 40S ribosomal protein S 29.0 61 0.0021 21.9 3.6 29 107-140 36-64 (86)
95 4a17_Y RPL37A, 60S ribosomal p 28.1 32 0.0011 24.2 2.1 26 107-138 36-61 (103)
96 1s24_A Rubredoxin 2; electron 27.9 32 0.0011 23.4 2.1 31 107-140 35-77 (87)
97 1twf_I B12.6, DNA-directed RNA 26.4 22 0.00075 25.4 1.1 37 106-142 71-111 (122)
98 3f2b_A DNA-directed DNA polyme 25.8 23 0.00077 34.5 1.4 9 107-115 502-510 (1041)
99 4rxn_A Rubredoxin; electron tr 25.7 65 0.0022 19.7 3.0 10 131-140 36-45 (54)
100 2gnr_A Conserved hypothetical 25.4 36 0.0012 25.1 2.1 23 108-140 48-70 (145)
101 2jrp_A Putative cytoplasmic pr 25.3 43 0.0015 22.4 2.3 24 108-142 19-42 (81)
102 2xzf_A Formamidopyrimidine-DNA 25.2 26 0.0009 28.4 1.5 27 109-139 244-270 (271)
103 1ee8_A MUTM (FPG) protein; bet 24.8 32 0.0011 27.8 1.9 27 109-139 237-263 (266)
104 3o9x_A Uncharacterized HTH-typ 24.6 42 0.0014 23.4 2.3 13 131-143 36-48 (133)
105 1h7b_A Anaerobic ribonucleotid 24.5 17 0.00059 33.1 0.3 28 107-140 540-567 (605)
106 3u6p_A Formamidopyrimidine-DNA 23.8 28 0.00094 28.4 1.4 26 109-138 247-272 (273)
107 1k82_A Formamidopyrimidine-DNA 23.6 29 0.00098 28.1 1.4 26 109-138 242-267 (268)
108 3j21_i 50S ribosomal protein L 23.5 30 0.001 23.3 1.3 27 107-139 35-61 (83)
109 1dl6_A Transcription factor II 23.1 27 0.00092 21.6 0.9 27 108-139 12-38 (58)
110 4h41_A Putative alpha-L-fucosi 22.8 66 0.0023 27.1 3.5 21 146-166 98-118 (340)
111 2akl_A PHNA-like protein PA012 22.7 32 0.0011 25.3 1.4 27 109-142 29-55 (138)
112 3jyw_9 60S ribosomal protein L 22.7 35 0.0012 22.4 1.4 27 107-139 26-52 (72)
113 3qt1_I DNA-directed RNA polyme 22.1 19 0.00064 26.4 0.0 36 106-141 91-130 (133)
114 3iz5_m 60S ribosomal protein L 22.0 34 0.0012 23.5 1.3 26 108-139 37-62 (92)
115 1k3x_A Endonuclease VIII; hydr 22.0 32 0.0011 27.7 1.4 26 109-138 236-261 (262)
116 2jne_A Hypothetical protein YF 21.8 50 0.0017 23.0 2.1 11 133-143 63-73 (101)
117 2k5c_A Uncharacterized protein 21.4 20 0.00069 24.3 0.0 9 133-141 10-18 (95)
118 3uj3_X DNA-invertase; helix-tu 20.6 29 0.001 26.0 0.8 26 152-177 75-104 (193)
119 1gdt_A GD resolvase, protein ( 20.5 71 0.0024 23.6 3.0 27 152-178 78-108 (183)
120 1nho_A Probable thioredoxin; b 20.4 50 0.0017 20.1 1.9 28 153-182 23-52 (85)
No 1
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-43 Score=314.31 Aligned_cols=183 Identities=58% Similarity=0.952 Sum_probs=96.9
Q ss_pred hhhhHHHHHHHHHHHHhhhhcCCCCccEEEEeCChhhHHhhcccCCCCHhhhc---------------------------
Q psy9094 2 EKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVRFS--------------------------- 54 (185)
Q Consensus 2 ~~~~~f~k~va~~~~~~f~~~~~~~i~~lIIaGPg~~k~~f~~~~~L~~~l~~--------------------------- 54 (185)
+++++||++|++.+.++|.+.++.++++|||||||++|++|++++||+++|++
T Consensus 201 e~~~~f~~~Vae~l~~~~~~~~~~~v~~lVlaGPg~~k~~f~~~~~l~~~L~~kvv~~vdvs~gg~~Gl~EvL~~~~~~L 280 (441)
T 3e20_C 201 EKRHNYVRKVAEGAVQHFITDDKPNVAGIVLAGSADFKTELGQSDLFDQRLQSRIIKTVDVSYGGDAGFNQAIELAADTL 280 (441)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCcCEEEEECCHHHHHHHHHhcccCHHHHhheEEEEECCCCCccCHHHHHHHHHHHH
Confidence 45689999999999999975335689999999999999999987799888754
Q ss_pred ----hHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCcccccc--
Q psy9094 55 ----PLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKD-- 128 (185)
Q Consensus 55 ----~~~E~~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~-- 128 (185)
+++|+++|++|+++|++++|++|||+++|++|+++|||+||||+|++...||+++|++|+ ..+.++.|.+..+
T Consensus 281 ~d~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~~~~-~~~~~~~~~~~~~~~ 359 (441)
T 3e20_C 281 SNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGN-PVITYMTKEQEEKDS 359 (441)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEEETTCCCEEC-----------CCEECSCTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEEecccccceeEEECCCCc-eEEEecCcccccccc
Confidence 789999999999999999999999999999999999999999999999999999999996 3444566664333
Q ss_pred -CCccccCccCcchhhhccccHHHHHHHHHHhcCCEEEEeCCCCchHHHHhhhcCCcC
Q psy9094 129 -KSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185 (185)
Q Consensus 129 -~~~~~c~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l~~~~GGia 185 (185)
++.+.||.||.++++++++++++||+++|+++|++|+|||++|++|+||+++|||||
T Consensus 360 ~~~~~~c~~~g~~~~~~e~~~~ve~l~e~a~~~G~~v~~vs~~~~eG~ql~~~fgGIa 417 (441)
T 3e20_C 360 TNSFLLDKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFVKGFGGIG 417 (441)
T ss_dssp -----------------CCEEHHHHHHHHGGGGSCCEEEECTTSHHHHHHHHTSTTEE
T ss_pred ccccccCcccCccceecchhhHHHHHHHHHHHcCCEEEEECCCCHHHHHHHHcCCcEE
Confidence 456789999999999999999999999999999999999999999999999999996
No 2
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=100.00 E-value=4.1e-41 Score=299.51 Aligned_cols=184 Identities=76% Similarity=1.148 Sum_probs=148.0
Q ss_pred hhhhHHHHHHHHHHHHhhhhcCCCCccEEEEeCChhhHHhhcccCCCCHhhhc---------------------------
Q psy9094 2 EKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVRFS--------------------------- 54 (185)
Q Consensus 2 ~~~~~f~k~va~~~~~~f~~~~~~~i~~lIIaGPg~~k~~f~~~~~L~~~l~~--------------------------- 54 (185)
+++++||++|++.+.++|...+..++++|||||||++|++|.++++++++|++
T Consensus 196 e~~~~f~~~Vae~l~~~~~~~~~~~~~~lIlaGpg~~k~~f~~~~~l~~~L~~~vv~~v~~s~g~~~gl~E~l~~~~~~l 275 (437)
T 1dt9_A 196 EKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVL 275 (437)
T ss_dssp HHTTTTTTHHHHHTTTTTSCSSSCSSSCCEEEESTTTTHHHHSCSSSCTTTTTTCCCEEECSSCTTHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCccEEEEECCHHHHHHHHHhhccChhhHhcEEEEEecCCCccccHHHHHHHHHHHH
Confidence 35689999999999999965334579999999999999999887888888654
Q ss_pred ----hHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCC
Q psy9094 55 ----PLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKS 130 (185)
Q Consensus 55 ----~~~E~~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~ 130 (185)
+.+|+++|++|++++++++++++||+++|++|+++|||+||||+|+|...|++++|++||...+.++.+.+.++++
T Consensus 276 ~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~~~r~~~r~~~~g~~~~~~~~~~~~~~r~ 355 (437)
T 1dt9_A 276 SNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKS 355 (437)
T ss_dssp TSHHHHHHHHHHHHHHHHHHSSSCCEEESHHHHHHHHHSSCCSEEEEESCCCCBCCCC---------CCCBCTTCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcEEecHHHHHHHHHhCCccEEEEecCcccceEEEEcCCCCceeeeeeccccccccc
Confidence 7899999999999999999999999999999999999999999999999999999999997666666666434567
Q ss_pred ccccCccCcchhhhccccHHHHHHHHHHhcCCEEEEeCCCCchHHHHhhhcCCcC
Q psy9094 131 HFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185 (185)
Q Consensus 131 ~~~c~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l~~~~GGia 185 (185)
.+.||.||.+++.++..|+++||+++|+++||+|+|||++|++|+||+++|||||
T Consensus 356 ~~~~~~~g~~~~~~~~~d~ve~L~e~~~~~G~~V~ivs~~~e~G~q~l~~~gGIa 410 (437)
T 1dt9_A 356 HFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIG 410 (437)
T ss_dssp CCC-----------CCCBHHHHHHHTCTTTTSCEEEECSSSHHHHHHHHTTTTEE
T ss_pred cccCcccCccccccccccHHHHHHHHHHHcCCEEEEECCCChhHHHHHHhCCCEE
Confidence 8899999999999999999999999999999999999999999999889999996
No 3
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=100.00 E-value=2.8e-37 Score=242.97 Aligned_cols=130 Identities=23% Similarity=0.377 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEe--eCccccccCCcc
Q psy9094 55 PLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLH--LTPEQEKDKSHF 132 (185)
Q Consensus 55 ~~~E~~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~--~~~~~~~~~~~~ 132 (185)
+++|+++|++||++|++|+|++|||+++|++|+++|||+||||||+|.+.|++++|++|+...+.. ..|.+ ..+..+
T Consensus 26 ~~~Ekkli~~f~~~i~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c~~~~~~~~~~~~~~~~~-~~~~~~ 104 (166)
T 3ir9_A 26 LMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCGYENKWTRRWKPGE-PAPAAG 104 (166)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEESSSSCEEEEEECCCC---CCCCCC
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEcHHHHHHHHHhCCceEEEEecCccceEEEEECCCCCceeEEEeecChhh-cccccc
Confidence 899999999999999999999999999999999999999999999999999999999999765554 44443 233466
Q ss_pred ccCccCcchhhhccccHHHHHHHHHHhcCCEEEEeCCCCchHHHHhhhcCCcC
Q psy9094 133 TDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185 (185)
Q Consensus 133 ~c~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l~~~~GGia 185 (185)
.||.||.++++++++++++||+++|+++|++|+|||++|++|+||+++|||||
T Consensus 105 ~c~~~g~~~~~~e~~~~ve~L~e~~~~~G~~v~ivs~~~eeG~ql~~~fGGIa 157 (166)
T 3ir9_A 105 NCPKCGSSLEVTDVTDIVDEFSELADKSNAKVVFVSTDFDEGSQLMNAFGGIA 157 (166)
T ss_dssp BCTTTCCBEEEEEEEEHHHHHHHHHHHTTCEEEEECSCSHHHHHHHHTSTTEE
T ss_pred cccccCccchhhhHHHHHHHHHHHHHhcCCEEEEECCCChhHHHHHHcCCCEE
Confidence 79999999999999999999999999999999999999999999999999996
No 4
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.9e-34 Score=251.43 Aligned_cols=140 Identities=18% Similarity=0.255 Sum_probs=126.3
Q ss_pred hhhhHHHHHHHHHHHHhhhhcCCCCccEEEEeCChhhHHhhcccCCCCHhhhc---------------------------
Q psy9094 2 EKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVRFS--------------------------- 54 (185)
Q Consensus 2 ~~~~~f~k~va~~~~~~f~~~~~~~i~~lIIaGPg~~k~~f~~~~~L~~~l~~--------------------------- 54 (185)
+++++||++|++.+.+++ ++.++++||||||||+|++|++ ||++++++
T Consensus 184 ~~~~~f~~~V~e~~~~~~---~~~~v~~iIlaGPg~~K~~f~~--~l~~~~~~~~i~~vd~s~g~~~gl~Evl~~~~v~~ 258 (364)
T 3obw_A 184 GIIEQNALEIATELAEYV---KQYDPDAILLAGPGFFKEEVSK--KVNAILKNKKIYIDSVSSATRAGLHEVLKRDIIDK 258 (364)
T ss_dssp THHHHHHHHHHHHHHHHH---HHHCCSEEEEECSSSHHHHHHH--HHHTTTCCSEEEEECCSCSSHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---ccccCCEEEEECChHHHHHHHH--HHHHHhhcCeEEEEeCCCCchHhHHHHHhchHHHH
Confidence 468999999999999986 2568999999999999999995 88775543
Q ss_pred ------hHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCcccccc
Q psy9094 55 ------PLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKD 128 (185)
Q Consensus 55 ------~~~E~~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~ 128 (185)
+++|+++|++|++++++++|++|||+++|++|+++|||+||||+|++.+++
T Consensus 259 ~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~----------------------- 315 (364)
T 3obw_A 259 IMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSD----------------------- 315 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSSEEESHHHHHHHHHHTCEEEEEEEGGGGSSC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCCcEEEEeccCcccc-----------------------
Confidence 779999999999999999999999999999999999999999999998652
Q ss_pred CCccccCccCcchhhhccccHHHHHHHHHHhcCCEEEEeCCCCchHHHHhhhcCCcC
Q psy9094 129 KSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185 (185)
Q Consensus 129 ~~~~~c~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l~~~~GGia 185 (185)
+ ..++.++||+++|+++||+|+|||++|++|+|| ++|||||
T Consensus 316 -----d----------~~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~qL-~~lGGIA 356 (364)
T 3obw_A 316 -----E----------QERLTIERMLEDIENKRGEVILVPKESPIYFEL-KNLTGIL 356 (364)
T ss_dssp -----H----------HHHHHHHHHHHHHHTTTCEEEEECTTSTTHHHH-HHTTTEE
T ss_pred -----c----------chHHHHHHHHHHHHhcCCEEEEECCCCCCchhh-hcCCcEE
Confidence 0 136789999999999999999999999999999 9999996
No 5
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-33 Score=246.82 Aligned_cols=141 Identities=18% Similarity=0.282 Sum_probs=123.9
Q ss_pred hhhhHHHHHHHHHHHHhhhhcCCCCccEEEEeCChhhHHhhcccCCCCHhh-----------hc----------------
Q psy9094 2 EKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVR-----------FS---------------- 54 (185)
Q Consensus 2 ~~~~~f~k~va~~~~~~f~~~~~~~i~~lIIaGPg~~k~~f~~~~~L~~~l-----------~~---------------- 54 (185)
+++++||++|++.+.++| ++.++++||||||||+|++|++ ||++++ +.
T Consensus 180 ~~~~~F~~~V~e~l~~~~---d~~~v~~iIlaGPgf~K~~f~~--~L~~~~~~~~~k~l~~~~~k~~vv~~s~gg~~gl~ 254 (390)
T 3mca_B 180 KGLDKFYDSVFQSINSEF---DFDKLKVVILASPGFVARGLYD--YIFSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLN 254 (390)
T ss_dssp HHHHHHHHHHHHHHHHHC---CTTTCSEEEEEESSSHHHHHHH--HHHHHHHHTTCHHHHHHGGGEEEEECSCSSGGGGG
T ss_pred HHHHHHHHHHHHHHHHHh---cccCCcEEEEECChHHHHHHHH--HHHHHHhhccchhhhhhcCeEEEEEcCCCcchhHH
Confidence 468899999999999998 4678999999999999999995 777643 11
Q ss_pred ----------------hHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeE
Q psy9094 55 ----------------PLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRV 118 (185)
Q Consensus 55 ----------------~~~E~~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~ 118 (185)
+++|+++|++||++|++++|++|||+++|++|+++|||+||||+|++.+ |++
T Consensus 255 Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r------~~d------ 322 (390)
T 3mca_B 255 EILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLFR------SSD------ 322 (390)
T ss_dssp TSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETTCC------CSC------
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEeccccc------CCC------
Confidence 7899999999999999999999999999999999999999999999964 332
Q ss_pred EeeCccccccCCccccCccCcchhhhccccHHHHHHHHHHhcCCEEEEeCCCCchHHHHhhhcCCcC
Q psy9094 119 LHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185 (185)
Q Consensus 119 ~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l~~~~GGia 185 (185)
|+ ++++++ +|++.|+++||+|+|||++|++|+|| ++|||||
T Consensus 323 ------------------~~------~r~~~~-~L~e~~~~~Gg~V~ivs~~~~~G~qL-~~lgGia 363 (390)
T 3mca_B 323 ------------------IA------TRKKWV-SLVEGVKEINCPVYIFSSLHESGKQL-DLLSGIA 363 (390)
T ss_dssp ------------------HH------HHHHHH-HHHHHHHHTTCCEEEECTTSHHHHHH-HHTTSEE
T ss_pred ------------------hh------HHHHHH-HHHHHHHhcCCEEEEECCCCCchhhh-hcCCcEE
Confidence 11 334555 89999999999999999999999999 9999996
No 6
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-33 Score=246.09 Aligned_cols=138 Identities=17% Similarity=0.351 Sum_probs=124.0
Q ss_pred hhhhHHHHHHHHHHHHhhhhcCCCCccEEEEeCChhhHHhhcccCCCCH---hhhc------------------------
Q psy9094 2 EKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDP---VRFS------------------------ 54 (185)
Q Consensus 2 ~~~~~f~k~va~~~~~~f~~~~~~~i~~lIIaGPg~~k~~f~~~~~L~~---~l~~------------------------ 54 (185)
+++++||++|++.+.++|. +.++++||||||||+|++|++ ||++ ++++
T Consensus 177 ~~~~~f~~~Vae~~~~~~~---~~~v~~iilaGPg~~k~~f~~--~l~~~~~~l~~kvv~v~~s~g~~~gl~Evl~~~~v 251 (357)
T 3j15_A 177 SEEMKFFHDVAKTMEEVMK---RENVEKAIVAGPGFVKEDFYK--FLKEKYPELAKKVVIEDTSVTGRTGIYEVIKRGVV 251 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHTCCCCEECCSTTHHHHHHH--HHHHHSCCSSCEECCCCCSCCHHHHHHHHHHTCTH
T ss_pred HHHHHHHHHHHHHHHHHhc---ccCCCEEEEECChHHHHHHHH--HHHHhhHHhhCeEEEEeCCCCchhhHHHHHhChhH
Confidence 4689999999999999994 468999999999999999984 8877 3322
Q ss_pred --------hHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCcccc
Q psy9094 55 --------PLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQE 126 (185)
Q Consensus 55 --------~~~E~~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~ 126 (185)
+++|+++|++|++++++++|++|||+++|++|+++|||+||||+|++.+.
T Consensus 252 ~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~---------------------- 309 (357)
T 3j15_A 252 DRVYQENRVAKEVQLVEKVLENIARNNGLVAYGLKEVEEAVNYGAVETLLVLDELLKG---------------------- 309 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTTEEESTHHHHHHHHHTCEEEEEEEHHHHTS----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEecccccc----------------------
Confidence 77999999999999999999999999999999999999999999999741
Q ss_pred ccCCccccCccCcchhhhccccHHHHHHHHHHhcCCEEEEeCCCCchHHHHhhhcCCcC
Q psy9094 127 KDKSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185 (185)
Q Consensus 127 ~~~~~~~c~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l~~~~GGia 185 (185)
+ .++.+++|++.|+++||+|+|||++|++|+|| ++|||||
T Consensus 310 --------~----------~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~qL-~~lgGia 349 (357)
T 3j15_A 310 --------E----------LREKVEELMDAVRYSRGEVVVVSSEHEGGEKL-KALGGLA 349 (357)
T ss_dssp --------S----------CCHHHHHHHHHHHHTTCEEEEECSSSTTHHHH-HHHCSEE
T ss_pred --------c----------chHHHHHHHHHHHHcCCEEEEECCCCCcchhh-hcCCcEE
Confidence 0 24568999999999999999999999999999 9999996
No 7
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=99.98 E-value=5.8e-33 Score=241.06 Aligned_cols=132 Identities=15% Similarity=0.301 Sum_probs=118.2
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCccEEEEeCChhhHHhhcccCCCCH---hhhc--------------------------
Q psy9094 4 RHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDP---VRFS-------------------------- 54 (185)
Q Consensus 4 ~~~f~k~va~~~~~~f~~~~~~~i~~lIIaGPg~~k~~f~~~~~L~~---~l~~-------------------------- 54 (185)
+++||++|++.+.++ ++++||||||||+|++|++ ||++ ++++
T Consensus 169 r~~F~~~V~e~~~~~-------~v~~iIlaGPg~~K~~f~~--~l~~~~~~l~~kvv~v~~s~gg~~gl~Evl~~~~v~~ 239 (352)
T 3oby_A 169 RKEFFGEVAAKLESF-------DFKYLIVAGPGFAKNDFLD--FLKERYPEMAKNAVVVDVSSVGSRGFIEILKRRVVDK 239 (352)
T ss_dssp CCCHHHHHHHHHHHH-------CCSEEEEECSTTHHHHHHH--HHHHHCHHHHTTEEECCCCCCHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhc-------CCCEEEEECCHHHHHHHHH--HHHHHHHHhhCcEEEEECCCCchhhHHHHHhChhHHH
Confidence 478999999999987 4999999999999999995 8887 3333
Q ss_pred ------hHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCcccccc
Q psy9094 55 ------PLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKD 128 (185)
Q Consensus 55 ------~~~E~~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~ 128 (185)
+++|+++|++||++|+++ |++|||+++|++|+++|||+||||+|+|.++. +
T Consensus 240 ~L~~~k~~~E~~~le~f~~~l~~d-~~a~YG~~eV~~Ale~GAVetLLIsd~l~r~~------r---------------- 296 (352)
T 3oby_A 240 IVGEVRLAEEAEYIDRLLEGIAKG-ERVAYGLDEVREAHNYRAIEVLLVADEFLLEE------R---------------- 296 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-CSEEESHHHHHHHHTTTCEEEEEEEHHHHHHH------T----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CcEEECHHHHHHHHHcCCceEEEEeccchhcc------c----------------
Confidence 789999999999999998 99999999999999999999999999998641 0
Q ss_pred CCccccCccCcchhhhccccHHHHHHHHHHhcCCEEEEeCCCCchHHHHhhhcCCcC
Q psy9094 129 KSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185 (185)
Q Consensus 129 ~~~~~c~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l~~~~GGia 185 (185)
.++.++||+++|+++||+|+|||++|++|+|| ++|||||
T Consensus 297 -----------------~~~~~~~l~e~~~~~G~~v~i~S~~~e~G~qL-~~lGGIa 335 (352)
T 3oby_A 297 -----------------EKWDVDGLLREVEESGGKVVIMSTEFEPGKRL-MSLGGIA 335 (352)
T ss_dssp -----------------TTSCHHHHHHHHHHTTCEEEEECTTSHHHHHH-HHTTSEE
T ss_pred -----------------chHHHHHHHHHHHHcCCEEEEEcCCCcchhHH-hcCCCEE
Confidence 02357899999999999999999999999999 9999996
No 8
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=99.98 E-value=2.6e-32 Score=239.65 Aligned_cols=141 Identities=15% Similarity=0.223 Sum_probs=124.8
Q ss_pred hhhhHHHHHHHHHHHHhhhhcCCCCccEEEEeCChhhHHhhcccCCCCHhhh-----------c----------------
Q psy9094 2 EKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVRF-----------S---------------- 54 (185)
Q Consensus 2 ~~~~~f~k~va~~~~~~f~~~~~~~i~~lIIaGPg~~k~~f~~~~~L~~~l~-----------~---------------- 54 (185)
+++++||++|++.+.++| ++.++++||||||||+|++|. +||+++++ +
T Consensus 186 ~~~~~F~~~V~~~l~~~~---~~~~v~~lIlaGPg~~k~~f~--~~l~~~~~~~~~~~~~~~~~ki~vv~~s~~~~~gl~ 260 (386)
T 2vgn_A 186 EKTEKFYKAIYSAMKKDL---NFDKLKTIILCSPGFYAKILM--DKIFQYAEEEHNKKILDNKGMFFIAHCSTGYLQGIN 260 (386)
T ss_dssp HHHHHHHHHHHHHHHHHC---CTTTCSEEEEEESTTHHHHHH--HHHHHHHHHTTCHHHHTTGGGEEEEECSCSSTHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---cccCCcEEEEECCHHHHHHHH--HHHHHHhhhhccchhhhccCcEEEEECCCCccccHH
Confidence 467999999999999999 467899999999999999998 48887653 1
Q ss_pred ----------------hHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeE
Q psy9094 55 ----------------PLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRV 118 (185)
Q Consensus 55 ----------------~~~E~~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~ 118 (185)
+++|+++|++|+++|++++++++||+++|++|+++|||+||||+|++.+ |+
T Consensus 261 Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l~~d~~~a~yG~~eV~~Ale~GAVetLLV~d~l~r------~~------- 327 (386)
T 2vgn_A 261 EVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYLLLTDKVLH------SD------- 327 (386)
T ss_dssp HHHHCGGGHHHHHHHHTHHHHHHHHHHHHHHTTTCSSEEESHHHHHHHHHTTCEEEEEEETTGGG------SS-------
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHcCCcEEEEEechhhc------CC-------
Confidence 7799999999999999999999999999999999999999999999964 32
Q ss_pred EeeCccccccCCccccCccCcchhhhccccHHHHHHHHHHhcCCEEEEeCCCCchHHHHhhhcCCcC
Q psy9094 119 LHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185 (185)
Q Consensus 119 ~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l~~~~GGia 185 (185)
|+ .++.+ +++|++.|+++||+|+|||++|++|+|| ++|||||
T Consensus 328 ---------------d~--------~~r~~-v~~L~e~v~~~Gg~V~ivs~~~e~G~qL-~~lgGIA 369 (386)
T 2vgn_A 328 ---------------NI--------AQREE-YLKLMDSVESNGGKALVLSTLHSLGEEL-DQLTGIA 369 (386)
T ss_dssp ---------------CH--------HHHHH-HHHHHHHHHHTTCEEEEECTTSHHHHHH-HHTTTEE
T ss_pred ---------------Cc--------hhhhH-HHHHHHHHHHcCCEEEEECCCCcchhhH-hccCcEE
Confidence 11 13334 8899999999999999999999999999 9999996
No 9
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=99.97 E-value=5.7e-32 Score=235.35 Aligned_cols=141 Identities=16% Similarity=0.274 Sum_probs=125.5
Q ss_pred hhhhHHHHHHHHHHHHhhhhcCCCCccEEEEeCChhhHHhhcccCCCCHhhhc---------------------------
Q psy9094 2 EKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVRFS--------------------------- 54 (185)
Q Consensus 2 ~~~~~f~k~va~~~~~~f~~~~~~~i~~lIIaGPg~~k~~f~~~~~L~~~l~~--------------------------- 54 (185)
+++++||++|++.+.++|- +.++++|||||||++|++|. +||++++++
T Consensus 171 ~~~~~f~~~Va~~l~~~~~---~~~~~~lIlAGpg~~k~~f~--~~L~~~~~~~~i~~v~~s~g~~~gl~E~l~~~~v~~ 245 (358)
T 3agj_B 171 QEVEKYVDRAAKRIVEEAA---RHRSPIAVIAGPGQLKTSVA--EKVQRAMPSLKVATVDTSMGGVAGVREALRRESVTR 245 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHTCSEEEEEESSSHHHHHH--HHHHHHSTTSEEEEEECSCCHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc---ccCCcEEEEECCHHHHHHHH--HHHHHHhhhceEEEEEcCCCCchhHHHHHhChhHHH
Confidence 4688999999999999983 45799999999999999998 588887533
Q ss_pred ------hHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCcccccc
Q psy9094 55 ------PLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKD 128 (185)
Q Consensus 55 ------~~~E~~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~ 128 (185)
+++|+++|++|++++++++|+++||+++|++|+++|||+||||+|++.+. ++
T Consensus 246 ~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~r~------~d---------------- 303 (358)
T 3agj_B 246 ILRELSIVEAEGVLEEFLRRIAKSRDTVAYTPGEVLAVARMGAVDTVLLVDTLLHS------PD---------------- 303 (358)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHCGGGEEESHHHHHHHHHHTCEEEEEEEHHHHTC------SS----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCceEEEEecccccC------CC----------------
Confidence 77999999999999999999999999999999999999999999999742 20
Q ss_pred CCccccCccCcchhhhccccHHHHHHHHHHhcCCEEEEeCCCCchHHHHhhhcCCcC
Q psy9094 129 KSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185 (185)
Q Consensus 129 ~~~~~c~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l~~~~GGia 185 (185)
.+.++.+++|+++|+++||+|+|||++|++|+|| ++|||||
T Consensus 304 ---------------~~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~qL-~~~gGIa 344 (358)
T 3agj_B 304 ---------------DAVREAVDEALRLVESMGGRVIIIPGDSPAGERL-VSFGGVI 344 (358)
T ss_dssp ---------------HHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHH-GGGTTEE
T ss_pred ---------------hhhHHHHHHHHHHHHHcCCEEEEECCCCcchhhh-hcCCcEE
Confidence 1335678999999999999999999999999998 9999996
No 10
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=99.96 E-value=1.3e-30 Score=226.01 Aligned_cols=126 Identities=14% Similarity=0.300 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCccEEEEeCChhhHHhhcccCCCCHhhhc-----------------------------
Q psy9094 4 RHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVRFS----------------------------- 54 (185)
Q Consensus 4 ~~~f~k~va~~~~~~f~~~~~~~i~~lIIaGPg~~k~~f~~~~~L~~~l~~----------------------------- 54 (185)
+++||++|++.+.++ + ++||||||||+|++|. +||++++++
T Consensus 174 r~~F~~~V~~~~~~~-------d-~~lIlaGPg~~k~~f~--~~l~~~~~~~i~~v~~s~~~~~gl~Evl~~~~v~~~L~ 243 (347)
T 2qi2_A 174 EASYFDQIVNALKNY-------S-NSIIILGPGFARDRFA--RYCAQRGVNVIGSFPANRTDSGAVYEFITSADGAKLLS 243 (347)
T ss_dssp HHHHHHHHHHHHHTC-------C-SCEEEEESSSHHHHHH--HHHHHTSCCCSCCEECSSSSHHHHHHHHHSHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc-------C-CeEEEECCHHHHHHHH--HHHHHhhcceEEEEecCCCccccHHHHHhChhHHHHHH
Confidence 489999999999876 2 8999999999999997 588776533
Q ss_pred ---hHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCc
Q psy9094 55 ---PLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSH 131 (185)
Q Consensus 55 ---~~~E~~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~ 131 (185)
+++|+++|++|+++++++ ++|||+++|++|+++|||++|||+|+|.+.
T Consensus 244 ~~k~~~E~~~l~~f~~~l~~d--~~~YG~~eV~~Ale~GAVetLlV~d~l~rr--------------------------- 294 (347)
T 2qi2_A 244 NERIARDKEIVDEFLVAVKKD--MGVYGRDQTESALQMGALSDLIITDEMFRT--------------------------- 294 (347)
T ss_dssp TSHHHHHHHHHHHHHHHHHTT--CEEESHHHHHHHHHTTCEEEEEEEHHHHTS---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CEEEcHHHHHHHHHcCCCeEEEEecccccc---------------------------
Confidence 789999999999999987 999999999999999999999999999641
Q ss_pred cccCccCcchhhhccccHHHHHHHHHHhcCCEEEEeCCCCchHHHHhhhcCCcC
Q psy9094 132 FTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185 (185)
Q Consensus 132 ~~c~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l~~~~GGia 185 (185)
++ +++|+++|+++||+|+|||++|++|+|| ++|||||
T Consensus 295 ---------------~~-~~~L~e~~~~~G~~V~ivs~~~e~G~qL-~~lGGIA 331 (347)
T 2qi2_A 295 ---------------ED-GRRSLSIAQTVGTRIHIVSVSNDPGQIV-KKFGGFA 331 (347)
T ss_dssp ---------------HH-HHHHHHHHHHHTCEEEEECTTSHHHHHH-HHTTSEE
T ss_pred ---------------hh-HHHHHHHHHHcCCEEEEECCCCcchHHH-HhcCCEE
Confidence 23 7899999999999999999999999999 9999996
No 11
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=99.96 E-value=1.9e-29 Score=220.20 Aligned_cols=138 Identities=28% Similarity=0.414 Sum_probs=124.1
Q ss_pred hhhhHHHHHHHHHHHHhhhhcC-CCCccEEEEeCChhhHHhhcccCCCCHhhhc--------------------------
Q psy9094 2 EKRHNYVRKVAEVATTLFITND-KPNIAGLILAGSADFKTELSQSDMFDPVRFS-------------------------- 54 (185)
Q Consensus 2 ~~~~~f~k~va~~~~~~f~~~~-~~~i~~lIIaGPg~~k~~f~~~~~L~~~l~~-------------------------- 54 (185)
+++++||++|++.+.++|.+.+ +.++++|||||||++|++|.+++||++++++
T Consensus 193 ~~~~~f~~~V~~~l~~~~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l~~~l~~~vi~~~v~~s~~~~~g~~E~l~~~~~ 272 (373)
T 3agk_A 193 QMVDEFFKKVGEEASNLLVPLAEKGVLKGVIVAGPGLAKQEFVEGNYLDYRLKKILAPELVDVAYQGLQGLKEAVMKAEK 272 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEESTTHHHHHHHSSCSCHHHHTTBCSSCEECCCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCcceEEEECChHHHHHhhhhhhcChHhhhCceeEEEccCCCccccHHHHHHHHHH
Confidence 3568999999999999996321 2579999999999999999977899987652
Q ss_pred ------hHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCcccccc
Q psy9094 55 ------PLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKD 128 (185)
Q Consensus 55 ------~~~E~~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~ 128 (185)
+.+|+++|++|++++++++++++||+++|.+|+++|||+||||+|+ |
T Consensus 273 ~l~~~~~~~e~~~l~~f~~~l~~~~g~a~yG~~eV~~Al~~GaVetLlv~d~----r----------------------- 325 (373)
T 3agk_A 273 VVEAQMYRDAVNAMEEFKLHLAKGTGMIVYGEKDVEAALEMGAVKTLLIHES----R----------------------- 325 (373)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTCCCEEESHHHHHHHHHTTCEEEEEEETT----C-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcEeeCHHHHHHHHHhCCccEEEEeCC----h-----------------------
Confidence 6799999999999999999999999999999999999999999997 2
Q ss_pred CCccccCccCcchhhhccccHHHHHHHHHHhcCCEEEEeCCCCchHHHHhhhcCCcC
Q psy9094 129 KSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185 (185)
Q Consensus 129 ~~~~~c~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l~~~~GGia 185 (185)
+++++|++.|.++||+|+|||++|++|+||+++|||||
T Consensus 326 -------------------d~~~~L~e~a~~~G~~V~ivs~~~~~g~ql~~~~gGIa 363 (373)
T 3agk_A 326 -------------------EDLEEWVEKAKSSGAQVIVVPESLAEAEWFLKTFGGLA 363 (373)
T ss_dssp -------------------TTHHHHHHHHTTTTCEEEEECTTSTTHHHHHHHHTTEE
T ss_pred -------------------hHHHHHHHHHHHcCCEEEEECCCCccHHHHHHhCCcEE
Confidence 13789999999999999999999999999999999996
No 12
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=99.93 E-value=5.5e-26 Score=170.74 Aligned_cols=93 Identities=15% Similarity=0.304 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCcccc
Q psy9094 55 PLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTD 134 (185)
Q Consensus 55 ~~~E~~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c 134 (185)
+++|+++|++||+++++++++++||+++|++|+++|||+||||+|++.+ |+ |
T Consensus 18 ~~~E~~ll~~f~~~i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r------~~----------------------d 69 (124)
T 1x52_A 18 AAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFR------HQ----------------------D 69 (124)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHT------CS----------------------S
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEEechhhhc------CC----------------------C
Confidence 8999999999999999999999999999999999999999999999953 32 2
Q ss_pred CccCcchhhhccccHHHHHHHHHHhcCCEEEEeCCCCchHHHHhhhcCCcC
Q psy9094 135 KETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQFVRGFGGIG 185 (185)
Q Consensus 135 ~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l~~~~GGia 185 (185)
+ .++.++++ |+++|+++|++|+|||++|++|+|| ++|||||
T Consensus 70 ~--------~~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G~qL-~~~gGIa 110 (124)
T 1x52_A 70 V--------ATRSRYVR-LVDSVKENAGTVRIFSSLHVSGEQL-SQLTGVA 110 (124)
T ss_dssp H--------HHHHHHHH-HHHHHHHTTCEEEEECSSSHHHHHH-HTTTTEE
T ss_pred h--------HHHHHHHH-HHHHHHHcCCEEEEECCCCccHHHH-hcCCCEE
Confidence 1 25577888 9999999999999999999999999 9999996
No 13
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=96.54 E-value=0.013 Score=42.73 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=49.6
Q ss_pred hCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhhhccccHH
Q psy9094 71 QDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLL 150 (185)
Q Consensus 71 ~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~v 150 (185)
...++.+.|.++|.+|++.|.+..++|..|..- .+++
T Consensus 16 ~k~gkl~~G~~~v~kai~~gkakLViiA~D~~~-------------------------------------------~~~~ 52 (121)
T 2lbw_A 16 SKAKNVKRGVKEVVKALRKGEKGLVVIAGDIWP-------------------------------------------ADVI 52 (121)
T ss_dssp HTTTCEEESHHHHHHHHHHSCCCEEEECTTCSC-------------------------------------------TTHH
T ss_pred HHcCCccccHHHHHHHHHcCCceEEEEeCCCCH-------------------------------------------HHHH
Confidence 367899999999999999999999999988531 1234
Q ss_pred HHHHHHHHhcCCEEEEeCCCCchHHHH
Q psy9094 151 EWLANNYKSFGATLEIITDKSQEGSQF 177 (185)
Q Consensus 151 ~~l~e~a~~~g~~v~ivs~~~e~G~~l 177 (185)
..+..++..+|..+.++++..+-|..+
T Consensus 53 ~~l~~lc~~~~VP~~~v~sk~eLG~a~ 79 (121)
T 2lbw_A 53 SHIPVLCEDHSVPYIFIPSKQDLGAAG 79 (121)
T ss_dssp HHHHHHHHHTCCCEEECCCHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEECCHHHHHHHh
Confidence 556677888888888888776666643
No 14
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=96.22 E-value=0.012 Score=42.94 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCc
Q psy9094 61 KMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD 102 (185)
Q Consensus 61 lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~ 102 (185)
+-+++++.+... |+.+.|.++|.+|++.|.+.-+|+..|..
T Consensus 16 l~~k~~~ll~~A-gkl~~G~~~v~kai~~gka~lViiA~D~~ 56 (120)
T 1xbi_A 16 IQKELLDAVAKA-QKIKKGANEVTKAVERGIAKLVIIAEDVK 56 (120)
T ss_dssp HHHHHHHHHHTC-SEEEESHHHHHHHHHHTCCSEEEEESCCS
T ss_pred HHHHHHHHHHHc-CCccccHHHHHHHHHcCCceEEEEcCCCC
Confidence 445566677655 89999999999999999999999998863
No 15
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.19 E-value=0.035 Score=38.90 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=53.1
Q ss_pred HHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhh
Q psy9094 64 KYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELEL 143 (185)
Q Consensus 64 ~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~ 143 (185)
..+.... ..|+.+.|.++|.+|++.|.+.-+++..|..
T Consensus 5 ~~L~la~-kagk~v~G~~~v~kai~~gka~lViiA~D~~----------------------------------------- 42 (99)
T 3j21_Z 5 FELRKAM-ETGKVVLGSNETIRLAKTGGAKLIIVAKNAP----------------------------------------- 42 (99)
T ss_dssp HHHHHHH-HSSCEEESHHHHHHHHHHTCCSEEEEECCCC-----------------------------------------
T ss_pred HHHHHHH-HhCCEeECHHHHHHHHHcCCccEEEEeCCCC-----------------------------------------
Confidence 3444444 5589999999999999999999999998732
Q ss_pred hccccHHHHHHHHHHhcCCEEEEe-CCCCchHHHH
Q psy9094 144 VECQPLLEWLANNYKSFGATLEII-TDKSQEGSQF 177 (185)
Q Consensus 144 ~e~~~~v~~l~e~a~~~g~~v~iv-s~~~e~G~~l 177 (185)
.+.+..+...+...+..++++ .+..+-|..+
T Consensus 43 ---~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~ 74 (99)
T 3j21_Z 43 ---KEIKDDIYYYAKLSDIPVYEFEGTSVELGTLL 74 (99)
T ss_dssp ---HHHHHHHHHHHHHTTCCEEEECCCSCGGGGTT
T ss_pred ---HHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHH
Confidence 224566677889999998776 7777777644
No 16
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=96.12 E-value=0.018 Score=39.17 Aligned_cols=66 Identities=20% Similarity=0.320 Sum_probs=54.3
Q ss_pred HHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhhhcc
Q psy9094 67 DEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVEC 146 (185)
Q Consensus 67 ~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~ 146 (185)
+.+. ..|+.+.|.++|.+|++.|.+.-+++..|..-
T Consensus 4 ~~~~-kagk~~~G~~~v~kai~~gkaklViiA~D~~~------------------------------------------- 39 (82)
T 3v7e_A 4 DKVS-QAKSIIIGTKQTVKALKRGSVKEVVVAKDADP------------------------------------------- 39 (82)
T ss_dssp HHHH-HCSEEEESHHHHHHHHTTTCEEEEEEETTSCH-------------------------------------------
T ss_pred HHHH-HcCCeeEcHHHHHHHHHcCCeeEEEEeCCCCH-------------------------------------------
Confidence 3443 45899999999999999999999999987521
Q ss_pred ccHHHHHHHHHHhcCCEEEEeCCCCchHHHH
Q psy9094 147 QPLLEWLANNYKSFGATLEIITDKSQEGSQF 177 (185)
Q Consensus 147 ~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l 177 (185)
+++..+...++.++..+.++++..+-|...
T Consensus 40 -~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~ 69 (82)
T 3v7e_A 40 -ILTSSVVSLAEDQGISVSMVESMKKLGKAC 69 (82)
T ss_dssp -HHHHHHHHHHHHHTCCEEEESCHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 345677889999999999999888777755
No 17
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=95.95 E-value=0.019 Score=42.83 Aligned_cols=70 Identities=11% Similarity=0.120 Sum_probs=50.1
Q ss_pred HHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhh
Q psy9094 64 KYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELEL 143 (185)
Q Consensus 64 ~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~ 143 (185)
+++... ...|+.+.|.++|.+|++.|.+.-++|..|..-.
T Consensus 22 ~~L~lA-~k~gkl~~G~~~v~kai~~gkakLViiA~D~~p~--------------------------------------- 61 (134)
T 2ale_A 22 DVVQQA-ANLRQLKKGANEATKTLNRGISEFIIMAADCEPI--------------------------------------- 61 (134)
T ss_dssp HHHHHH-HHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSG---------------------------------------
T ss_pred HHHHHH-HHcCCcccCchHHHHHHHhCCCeEEEEeCCCCHH---------------------------------------
Confidence 344444 3568999999999999999999999999885321
Q ss_pred hccccHHHHHHHHHHhcCCEEEEeCCCCchHHHH
Q psy9094 144 VECQPLLEWLANNYKSFGATLEIITDKSQEGSQF 177 (185)
Q Consensus 144 ~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l 177 (185)
+++..+..+|+.+|..+.++.+..+-|..+
T Consensus 62 ----~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~ 91 (134)
T 2ale_A 62 ----EILLHLPLLCEDKNVPYVFVPSRVALGRAC 91 (134)
T ss_dssp ----GGGTHHHHHHHHHTCCEEEESCHHHHHHHT
T ss_pred ----HHHHHHHHHHHhcCCCEEEECCHHHHHHHh
Confidence 123345567777777777777766666543
No 18
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=95.73 E-value=0.02 Score=40.70 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=28.6
Q ss_pred hCCCceEecHHHHHHHHHcCCccEEEeeccC
Q psy9094 71 QDTGKYCFGVEDTLRALELGSVETLICWENL 101 (185)
Q Consensus 71 ~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l 101 (185)
...|+.+.|.++|.+|++.|.+.-+|+..|.
T Consensus 18 ~kagk~v~G~~~v~kai~~gkaklVilA~D~ 48 (105)
T 3u5e_c 18 IKSGKYTLGYKSTVKSLRQGKSKLIIIAANT 48 (105)
T ss_dssp HTTSEEEESHHHHHHHHHTTCCSEEEECTTS
T ss_pred HHhCCeeECHHHHHHHHHcCCceEEEEeCCC
Confidence 3668999999999999999999999999885
No 19
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=95.71 E-value=0.017 Score=41.37 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=30.1
Q ss_pred HHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccC
Q psy9094 65 YFDEISQDTGKYCFGVEDTLRALELGSVETLICWENL 101 (185)
Q Consensus 65 f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l 101 (185)
++.... ..|+.+.|.++|.+|++.|.+.-+|+..|.
T Consensus 12 ~L~la~-kagkl~~G~~~v~kai~~gka~lViiA~D~ 47 (110)
T 3cpq_A 12 AIRTAV-DTGKVILGSKRTIKFVKHGEGKLVVLAGNI 47 (110)
T ss_dssp HHHHHH-HHSEEEESHHHHHHHHHTTCCSEEEECTTC
T ss_pred HHHHHH-HcCCeeeCHHHHHHHHHcCCceEEEEeCCC
Confidence 344433 458999999999999999999999999886
No 20
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=95.69 E-value=0.073 Score=39.15 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=51.2
Q ss_pred CCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhhhccccHHH
Q psy9094 72 DTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLLE 151 (185)
Q Consensus 72 ~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~v~ 151 (185)
..|+.+.|..+|.+|++.|.+..++|..|..- .+++.
T Consensus 21 ~~gkl~~G~~~v~Kai~~gka~LViiA~D~~p-------------------------------------------~~~~~ 57 (126)
T 2xzm_U 21 CQDAISKGLHEVLRTIEAKQALFVCVAEDCDQ-------------------------------------------GNYVK 57 (126)
T ss_dssp SSSCEEESHHHHHHHHHHTCCSEEEEESSCCS-------------------------------------------TTHHH
T ss_pred HcCCEeecHHHHHHHHHcCCceEEEEeCCCCh-------------------------------------------HHHHH
Confidence 45899999999999999999999999987521 12345
Q ss_pred HHHHHHHhcCCEEEEeCCCCchHHHH
Q psy9094 152 WLANNYKSFGATLEIITDKSQEGSQF 177 (185)
Q Consensus 152 ~l~e~a~~~g~~v~ivs~~~e~G~~l 177 (185)
.+...+..++..+.++++..+-|...
T Consensus 58 ~i~~lc~~~~Ip~~~v~sk~~LG~a~ 83 (126)
T 2xzm_U 58 LVKALCAKNEIKYVSVPKRASLGEYL 83 (126)
T ss_dssp HHHHHHHHTTCCEEEESCSHHHHHHH
T ss_pred HHHHHHHHhCCCEEEECCHHHHHHHH
Confidence 66778899999999999888777754
No 21
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=95.69 E-value=0.027 Score=40.95 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=28.3
Q ss_pred CCCceEecHHHHHHHHHcCCccEEEeeccCc
Q psy9094 72 DTGKYCFGVEDTLRALELGSVETLICWENLD 102 (185)
Q Consensus 72 ~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~ 102 (185)
..|+.+.|.++|.+|++.|.+.-+++..|..
T Consensus 26 kag~l~~G~~~v~kal~~gka~lViiA~D~~ 56 (120)
T 1vq8_F 26 DTGAVKKGTNETTKSIERGSAELVFVAEDVQ 56 (120)
T ss_dssp HSSCEEESHHHHHHHHHHTCCSEEEEESCCS
T ss_pred HcCCEeECHHHHHHHHHcCCceEEEEeCCCC
Confidence 4589999999999999999999999998863
No 22
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=95.66 E-value=0.032 Score=40.84 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=28.5
Q ss_pred CCCceEecHHHHHHHHHcCCccEEEeeccCc
Q psy9094 72 DTGKYCFGVEDTLRALELGSVETLICWENLD 102 (185)
Q Consensus 72 ~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~ 102 (185)
..|+.+.|.++|.+|++.|.+.-+++..|..
T Consensus 28 kagklv~G~~~v~kai~~gka~lViiA~D~~ 58 (122)
T 3o85_A 28 SLQAIKRGANEALKQVNRGKAELVIIAADAD 58 (122)
T ss_dssp HTTCEEESHHHHHHHHHTTCCSEEEEETTCS
T ss_pred HhCCEeEcHHHHHHHHHcCCceEEEEeCCCC
Confidence 5689999999999999999999999998863
No 23
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=95.63 E-value=0.028 Score=39.57 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=50.0
Q ss_pred hhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhhhccccH
Q psy9094 70 SQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPL 149 (185)
Q Consensus 70 ~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ 149 (185)
+...|+.+.|.++|.+|++.|.+.-+|+..|... +.
T Consensus 13 a~kagk~v~G~~~v~kai~~gka~lViiA~D~~~--------------------------------------------~~ 48 (101)
T 3on1_A 13 AARARQLLTGEEQVVKAVQNGQVTLVILSSDAGI--------------------------------------------HT 48 (101)
T ss_dssp HHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCH--------------------------------------------HH
T ss_pred HHHHCCEeECHHHHHHHHHcCCCcEEEEeCCCCH--------------------------------------------HH
Confidence 3466899999999999999999999999988531 12
Q ss_pred HHHHHHHHHhcCCEEEEeCCCCchHHHH
Q psy9094 150 LEWLANNYKSFGATLEIITDKSQEGSQF 177 (185)
Q Consensus 150 v~~l~e~a~~~g~~v~ivs~~~e~G~~l 177 (185)
+..+...+..++..++++.+..+-|..+
T Consensus 49 ~~~i~~~c~~~~ip~~~~~s~~eLG~a~ 76 (101)
T 3on1_A 49 KKKLLDKCGSYQIPVKVVGNRQMLGRAI 76 (101)
T ss_dssp HHHHHHHHHHHTCCEEEESCHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEeCCHHHHHHHh
Confidence 3455667888888888888777666643
No 24
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=95.55 E-value=0.089 Score=37.89 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=53.0
Q ss_pred HHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhh
Q psy9094 64 KYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELEL 143 (185)
Q Consensus 64 ~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~ 143 (185)
.++... ...|+.+.|.++|++|++.|.+..+|+..|...
T Consensus 16 ~~L~la-~kagk~~~G~~~t~kai~~gkakLVilA~D~~~---------------------------------------- 54 (112)
T 3iz5_f 16 NKLQLV-MKSGKYTLGYKTVLKTLRSSLGKLIILANNCPP---------------------------------------- 54 (112)
T ss_dssp HHHHHH-HTTCEEEESHHHHHHHHHTTCCSEEEECSCCCH----------------------------------------
T ss_pred HHHHHH-HHhCCeeECHHHHHHHHHcCCceEEEEeCCCCH----------------------------------------
Confidence 334444 466999999999999999999999999988531
Q ss_pred hccccHHHHHHHHHHhcCCEEEEe-CCCCchHHHH
Q psy9094 144 VECQPLLEWLANNYKSFGATLEII-TDKSQEGSQF 177 (185)
Q Consensus 144 ~e~~~~v~~l~e~a~~~g~~v~iv-s~~~e~G~~l 177 (185)
+....+...|...+..++.+ .+..+-|..+
T Consensus 55 ----~~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~ 85 (112)
T 3iz5_f 55 ----LRKSEIETYAMLAKISVHHFHGNNVDLGTAC 85 (112)
T ss_dssp ----HHHHHHHHHHHHTTCCEECCCCTTCTHHHHH
T ss_pred ----HHHHHHHHHHHHcCCcEEEeCCCHHHHHHHh
Confidence 13445666888888888888 7777777755
No 25
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=95.55 E-value=0.026 Score=41.30 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=28.0
Q ss_pred CCCceEecHHHHHHHHHcCCccEEEeeccCc
Q psy9094 72 DTGKYCFGVEDTLRALELGSVETLICWENLD 102 (185)
Q Consensus 72 ~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~ 102 (185)
..|+.+.|.++|.+|++.|.+.-+|+..|..
T Consensus 25 kagkl~~G~~~v~kal~~gka~lViiA~D~~ 55 (124)
T 2fc3_A 25 ETGRIKKGTNETTKAVERGLAKLVVIAEDVD 55 (124)
T ss_dssp HHSEEEESHHHHHHHHHTTCCSEEEEETTCS
T ss_pred HhCCccCCHHHHHHHHHcCCceEEEEcCCCC
Confidence 4479999999999999999999999998863
No 26
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=95.53 E-value=0.034 Score=39.14 Aligned_cols=64 Identities=6% Similarity=0.139 Sum_probs=49.6
Q ss_pred hhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhhhccccH
Q psy9094 70 SQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPL 149 (185)
Q Consensus 70 ~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ 149 (185)
+...|+++.|.++|.+|++.|.+.-+|+..|.... .
T Consensus 14 a~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~--------------------------------------------~ 49 (101)
T 3v7q_A 14 ANRARKVVSGEDLVIKEIRNARAKLVLLTEDASSN--------------------------------------------T 49 (101)
T ss_dssp HHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHH--------------------------------------------H
T ss_pred hhhhhhcccchhhhHHHHhcCceeEEEEecccccc--------------------------------------------c
Confidence 34668999999999999999999999999885321 2
Q ss_pred HHHHHHHHHhcCCEEEEeCCCCchHHHH
Q psy9094 150 LEWLANNYKSFGATLEIITDKSQEGSQF 177 (185)
Q Consensus 150 v~~l~e~a~~~g~~v~ivs~~~e~G~~l 177 (185)
...+...|..++..++++.+..+-|..+
T Consensus 50 ~~~i~~~c~~~~vp~~~~~s~~eLG~A~ 77 (101)
T 3v7q_A 50 AKKVTDKCNYYKVPYKKVESRAVLGRSI 77 (101)
T ss_dssp HHHHHHHHHHTTCCEEEESCHHHHHHHT
T ss_pred hhhhcccccccCCCeeeechHHHHHhhh
Confidence 3445567888888888887776666543
No 27
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=95.49 E-value=0.052 Score=40.31 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=51.3
Q ss_pred HHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhh
Q psy9094 64 KYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELEL 143 (185)
Q Consensus 64 ~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~ 143 (185)
.++.... ..|+.+.|.++|.+|++.|.+.-+++..|..-.
T Consensus 31 ~~L~lA~-kagklv~G~~~v~kal~~gkaklViiA~D~~~~--------------------------------------- 70 (135)
T 2aif_A 31 NLVQQAC-NYKQLRKGANEATKALNRGIAEIVLLAADAEPL--------------------------------------- 70 (135)
T ss_dssp HHHHHHH-HTTCEEESHHHHHHHHHTTCEEEEEEETTCSCH---------------------------------------
T ss_pred HHHHHHH-HcCCcccCHHHHHHHHHcCCCeEEEEecCCChH---------------------------------------
Confidence 3444443 568999999999999999999999999875311
Q ss_pred hccccHHHHHHHHHHhcCCEEEEeCCCCchHHHH
Q psy9094 144 VECQPLLEWLANNYKSFGATLEIITDKSQEGSQF 177 (185)
Q Consensus 144 ~e~~~~v~~l~e~a~~~g~~v~ivs~~~e~G~~l 177 (185)
.++..+...|..++..+.++.+..+-|..+
T Consensus 71 ----~~~~~l~~lc~~~~IP~~~v~sk~eLG~a~ 100 (135)
T 2aif_A 71 ----EILLHLPLVCEDKNTPYVFVRSKVALGRAC 100 (135)
T ss_dssp ----HHHHHHHHHHHHTTCCEEEESCHHHHHHHT
T ss_pred ----HHHhHHHHHHHhcCCcEEEECCHHHHHHHh
Confidence 123556677888888888887776666543
No 28
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=95.46 E-value=0.018 Score=40.90 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=47.5
Q ss_pred CCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhhhccccHHH
Q psy9094 72 DTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLLE 151 (185)
Q Consensus 72 ~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~v~ 151 (185)
..|+.+.|.++|.+|++.|.+..+|+..|.... ...
T Consensus 19 kagklv~G~~~v~kai~~gkaklViiA~D~~~~--------------------------------------------~~~ 54 (104)
T 4a18_G 19 RSGKATLGYKSTIKAIRNGTAKLVFISNNCPTV--------------------------------------------RKS 54 (104)
T ss_dssp HHSEEEESHHHHHHHHHHTCCCEEEECTTSCHH--------------------------------------------HHH
T ss_pred HhCCEeECHHHHHHHHHcCCceEEEEeCCCCHH--------------------------------------------HHH
Confidence 558999999999999999999999999875311 234
Q ss_pred HHHHHHHhcCCEEE-EeCCCCchHHHH
Q psy9094 152 WLANNYKSFGATLE-IITDKSQEGSQF 177 (185)
Q Consensus 152 ~l~e~a~~~g~~v~-ivs~~~e~G~~l 177 (185)
.+...++..+..++ ++.+..+-|..+
T Consensus 55 ~i~~~c~~~~ip~~~~~~s~~eLG~a~ 81 (104)
T 4a18_G 55 EIEYYASLAQISIHHFVGSNVELGTAC 81 (104)
T ss_dssp HHHHHHHHHTCEEEECSSCHHHHHHHT
T ss_pred HHHHHHHHcCCcEEEecCCHHHHHHHh
Confidence 45556777888888 477777666654
No 29
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=95.32 E-value=0.03 Score=40.64 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=28.0
Q ss_pred CCCceEecHHHHHHHHHcCCccEEEeeccCc
Q psy9094 72 DTGKYCFGVEDTLRALELGSVETLICWENLD 102 (185)
Q Consensus 72 ~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~ 102 (185)
..|+.+.|.++|.+|++.|.+.-+++..|..
T Consensus 24 kag~l~~G~~~v~kal~~gka~lViiA~D~~ 54 (119)
T 1rlg_A 24 ESGKVKKGTNETTKAVERGLAKLVYIAEDVD 54 (119)
T ss_dssp HHSEEEESHHHHHHHHTTTCCSEEEEESCCS
T ss_pred HhCCeeECHHHHHHHHHcCCCcEEEEeCCCC
Confidence 3489999999999999999999999998863
No 30
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=95.27 E-value=0.056 Score=37.89 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=50.5
Q ss_pred HHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhh
Q psy9094 64 KYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELEL 143 (185)
Q Consensus 64 ~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~ 143 (185)
.++.... ..|+.+.|.++|.+|++.|.+.-+++..|..
T Consensus 6 ~~L~la~-kagkl~~G~~~v~kai~~gka~lViiA~D~~----------------------------------------- 43 (101)
T 1w41_A 6 FELRKAQ-DTGKIVMGARKSIQYAKMGGAKLIIVARNAR----------------------------------------- 43 (101)
T ss_dssp HHHHHHH-HHSEEEESHHHHHHHHHHTCCSEEEEETTSC-----------------------------------------
T ss_pred HHHHHHH-HcCCEeECHHHHHHHHHcCCCcEEEEeCCCC-----------------------------------------
Confidence 3444443 4589999999999999999999999998732
Q ss_pred hccccHHHHHHHHHHhcCCEEEEe-CCCCchHHHH
Q psy9094 144 VECQPLLEWLANNYKSFGATLEII-TDKSQEGSQF 177 (185)
Q Consensus 144 ~e~~~~v~~l~e~a~~~g~~v~iv-s~~~e~G~~l 177 (185)
.+.+..+...++.++..++++ .+..+-|..+
T Consensus 44 ---~~~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~ 75 (101)
T 1w41_A 44 ---PDIKEDIEYYARLSGIPVYEFEGTSVELGTLL 75 (101)
T ss_dssp ---HHHHHHHHHHHHHHTCCEEEESSCHHHHHHHT
T ss_pred ---HHHHHHHHHHHHhcCCCEEEecCCHHHHHHHh
Confidence 123455667788888887775 6666655543
No 31
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=93.61 E-value=0.033 Score=42.07 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=31.6
Q ss_pred HHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcc
Q psy9094 65 YFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDI 103 (185)
Q Consensus 65 f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~ 103 (185)
++... ...++.+.|.++|.+|++.|.+.-++|..|..-
T Consensus 41 ~L~lA-~kagkl~~G~kev~KaI~~gkakLVIIA~D~~p 78 (144)
T 2jnb_A 41 LVQQS-CNYKQLRKGANEATKTLNRGISEFIVMAADAEP 78 (144)
T ss_dssp HHHHH-HHTTCCCBCHHHHHHHHHHTCEEEEEEETTCSC
T ss_pred HHHHH-HHcCCccccHHHHHHHHHhCCCeEEEEeCCCCH
Confidence 34433 356899999999999999999999999998754
No 32
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=92.08 E-value=0.23 Score=35.81 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=51.5
Q ss_pred hhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhhhccccH
Q psy9094 70 SQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPL 149 (185)
Q Consensus 70 ~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ 149 (185)
.+.+.....|.++|.+|++.|.+..++|..|..- .++
T Consensus 20 ~~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p-------------------------------------------~~i 56 (113)
T 3jyw_G 20 SPKPYAVKYGLNHVVALIENKKAKLVLIANDVDP-------------------------------------------IEL 56 (113)
T ss_dssp SSSSSCEEESHHHHHHTTTTTCCSEEEECSCCSS-------------------------------------------HHH
T ss_pred CCCCchhhchHHHHHHHHHcCCceEEEEeCCCCH-------------------------------------------HHH
Confidence 3566778999999999999999999999988531 123
Q ss_pred HHHHHHHHHhcCCEEEEeCCCCchHHHH
Q psy9094 150 LEWLANNYKSFGATLEIITDKSQEGSQF 177 (185)
Q Consensus 150 v~~l~e~a~~~g~~v~ivs~~~e~G~~l 177 (185)
+..|..+++.+|.-+.++++..+-|...
T Consensus 57 ~~~l~~lC~~~~VP~~~v~sk~~LG~a~ 84 (113)
T 3jyw_G 57 VVFLPALCKKMGVPYAIVKGKARLGTLV 84 (113)
T ss_dssp HTTHHHHHHHTTCCCEECSCSTTTHHHH
T ss_pred HHHHHHHHHHcCCCEEEECCHHHHHHHH
Confidence 3446678899999999999988887744
No 33
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=90.68 E-value=0.4 Score=36.03 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcc
Q psy9094 61 KMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVE 140 (185)
Q Consensus 61 lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 140 (185)
.|.+.++... ..++.+.|..++.+|++.|.+..+++.+|..-
T Consensus 27 aL~~vLk~A~-~~g~l~~G~~et~Kal~kg~a~LvvLA~D~~~------------------------------------- 68 (143)
T 3u5c_M 27 ALKVVLRTAL-VHDGLARGLRESTKALTRGEALLVVLVSSVTE------------------------------------- 68 (143)
T ss_dssp HHHHHHHHHH-HTTCEEESHHHHHHHHSSTTCSCEECCSCCST-------------------------------------
T ss_pred HHHHHHHHHH-HcCCEeEcHHHHHHHHhcCceeEEEEeCCCCH-------------------------------------
Confidence 3445555544 44789999999999999999999999987421
Q ss_pred hhhhccccHHHHHHHHHH--hcCCEEEEeCCCCchHHH
Q psy9094 141 LELVECQPLLEWLANNYK--SFGATLEIITDKSQEGSQ 176 (185)
Q Consensus 141 ~~~~e~~~~v~~l~e~a~--~~g~~v~ivs~~~e~G~~ 176 (185)
.+++..+..++. ..+..+..|++..+-|++
T Consensus 69 ------~~i~k~i~~lC~~~e~~IP~i~V~s~keLG~a 100 (143)
T 3u5c_M 69 ------ANIIKLVEGLANDPENKVPLIKVADAKQLGEW 100 (143)
T ss_dssp ------THHHHHHHHHHHCSSSCCCCCCCSCHHHHHHH
T ss_pred ------HHHHHHHHHHHhhhhhCCCEEEECCHHHHhHH
Confidence 123444556777 778888888876666654
No 34
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=90.64 E-value=1.2 Score=32.51 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=28.9
Q ss_pred hCCCceEecHHHHHHHHHcCCccEEEeeccCc
Q psy9094 71 QDTGKYCFGVEDTLRALELGSVETLICWENLD 102 (185)
Q Consensus 71 ~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~ 102 (185)
...|+++.|.++|++|++.|.+..+|+..|..
T Consensus 23 ~kaGklv~G~~~v~kaIr~gkakLVIiA~Das 54 (125)
T 3vi6_A 23 MKSGKYVLGYKQTLKMIRQGKAKLVILANNCP 54 (125)
T ss_dssp HHHSEEEESHHHHHHHHHTTCCSEEEECTTSC
T ss_pred HHhCCeeeCHHHHHHHHHcCCceEEEEeCCCC
Confidence 35589999999999999999999999999864
No 35
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=90.37 E-value=0.32 Score=40.22 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=28.7
Q ss_pred hCCCceEecHHHHHHHHHcCCccEEEeeccCc
Q psy9094 71 QDTGKYCFGVEDTLRALELGSVETLICWENLD 102 (185)
Q Consensus 71 ~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~ 102 (185)
+.++.++.|.++|.+|++.|.+..+||..|..
T Consensus 131 k~~~~L~~G~keV~KaIekgkAkLVIIA~Das 162 (266)
T 2zkr_f 131 KRPPVLRAGVNTVTTLVENKKAQLVVIAHDVD 162 (266)
T ss_dssp SSCCCCCBSHHHHHHHHHTTCCSEEEEESCCS
T ss_pred CCCCeeeeChHHHHHHHHhCCceEEEEecCCC
Confidence 35678899999999999999999999999863
No 36
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=88.30 E-value=0.27 Score=37.81 Aligned_cols=63 Identities=11% Similarity=-0.118 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhCCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcc
Q psy9094 61 KMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVE 140 (185)
Q Consensus 61 lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 140 (185)
.+.++|+.+.++...-.--.+..++.++.|.+- + . ...|+|+.||+... +. .+..||-||.+
T Consensus 101 ~~a~~f~~i~~~E~~H~~~~~~~l~~l~~~~~~-----~-~---~~~~~C~~CG~i~~----~~-----~p~~CP~Cg~~ 162 (170)
T 3pwf_A 101 EAVRTTHYALEAEKIHAELYRKAKEKAEKGEDI-----E-I---KKVYICPICGYTAV----DE-----APEYCPVCGAP 162 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC-----C-C---SCEEECTTTCCEEE----SC-----CCSBCTTTCCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC-----C-C---CCeeEeCCCCCeeC----CC-----CCCCCCCCCCC
Confidence 444556666655445555566777778888762 1 1 13699999997443 11 12279999976
Q ss_pred h
Q psy9094 141 L 141 (185)
Q Consensus 141 ~ 141 (185)
-
T Consensus 163 ~ 163 (170)
T 3pwf_A 163 K 163 (170)
T ss_dssp G
T ss_pred H
Confidence 4
No 37
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=85.37 E-value=1.2 Score=36.45 Aligned_cols=30 Identities=10% Similarity=0.207 Sum_probs=26.1
Q ss_pred CCceEecHHHHHHHHHcCCccEEEeeccCc
Q psy9094 73 TGKYCFGVEDTLRALELGSVETLICWENLD 102 (185)
Q Consensus 73 ~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~ 102 (185)
+....+|.++|.+|++.|.+..+||..|..
T Consensus 129 p~~lk~G~keV~KaIekgKAkLVVIA~Dad 158 (256)
T 3izc_H 129 PYAVKYGLNHVVALIENKKAKLVLIANDVD 158 (256)
T ss_dssp SCCEEESHHHHHHHHHHTCCSEEEEESCCS
T ss_pred ChhhhccHHHHHHHHHhCcceEEEEeCCCC
Confidence 345678999999999999999999998863
No 38
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=84.08 E-value=1.1 Score=33.63 Aligned_cols=53 Identities=4% Similarity=-0.085 Sum_probs=28.8
Q ss_pred HHHHHHHcCCccEEEeeccCcce-eeEeecCCCCceeEEeeCccccccCCccccCccCcchh
Q psy9094 82 DTLRALELGSVETLICWENLDIQ-RYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELE 142 (185)
Q Consensus 82 ev~~Ale~GaV~~Llv~d~l~~~-r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~ 142 (185)
...+.++.-.|..+=+.+-+... .|.|+|..||...... ...-.||.||+++.
T Consensus 106 ~l~~vA~~~Gv~v~~~~~~i~~~~~~~y~C~~Cg~~~~~~--------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 106 NVQNIASLLGLRFRTLKRGIKKVIKWRYVCIGCGRKFSTL--------PPGGVCPDCGSKVK 159 (165)
T ss_dssp HHHHHHHHTTCCEECCSCCCSSCCCCCEEESSSCCEESSC--------CGGGBCTTTCCBEE
T ss_pred HHHHHHHHCCCeEEchhhhccccccEEEECCCCCCcccCC--------CCCCcCCCCCCcce
Confidence 34444444445544444333322 4689999999522111 01226999999853
No 39
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=81.78 E-value=0.73 Score=33.07 Aligned_cols=26 Identities=8% Similarity=-0.032 Sum_probs=17.9
Q ss_pred EeecCCCCceeEEeeCccccccCCcc-ccCccCcc
Q psy9094 107 VLKNHSTSEDRVLHLTPEQEKDKSHF-TDKETGVE 140 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~~~~~~~-~c~~~g~~ 140 (185)
.|+|.+||..... ....+ .||.||++
T Consensus 73 ~~~C~~CG~~~e~--------~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFKP--------NALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEECS--------CCSTTCCCSSSSSC
T ss_pred eEEcCCCCCEEeC--------CCCCCCcCccccCC
Confidence 5899999963221 11255 79999987
No 40
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=81.21 E-value=3.1 Score=34.00 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=48.4
Q ss_pred CCCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhhhccccHHH
Q psy9094 72 DTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLLE 151 (185)
Q Consensus 72 ~~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~v~ 151 (185)
.+-...+|+++|..+++.|...-++|..|.. ..+++-
T Consensus 124 rp~~lk~GvneVTklVE~kKAqLVVIA~DVd-------------------------------------------PiElV~ 160 (258)
T 3iz5_H 124 KPIVVKYGLNHVTYLIEQSKAQLVVIAHDVD-------------------------------------------PIELVV 160 (258)
T ss_dssp CCCCEEESHHHHHHHHHTTCEEEEEEESCCS-------------------------------------------STHHHH
T ss_pred CCceeecccHHHHHHHHcCcceEEEEeCCCC-------------------------------------------hHHHHh
Confidence 3455679999999999999999999998852 134566
Q ss_pred HHHHHHHhcCCEEEEeCCCCchHH
Q psy9094 152 WLANNYKSFGATLEIITDKSQEGS 175 (185)
Q Consensus 152 ~l~e~a~~~g~~v~ivs~~~e~G~ 175 (185)
.|-.+|.++|.-..||++...-|.
T Consensus 161 fLPaLC~k~gVPY~iVk~KarLG~ 184 (258)
T 3iz5_H 161 WLPALCRKMEVPYCIVKGKARLGS 184 (258)
T ss_dssp HHHHHHTTTTCCEEEESCHHHHHH
T ss_pred HHHHHHHhcCCCeEEECCHHHHHH
Confidence 777888888888888888766665
No 41
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=80.92 E-value=4.7 Score=32.98 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=44.5
Q ss_pred CCceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhhhccccHHHH
Q psy9094 73 TGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEW 152 (185)
Q Consensus 73 ~~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~v~~ 152 (185)
+-...+|.++|..+++.|...-++|..|..- .+++-.
T Consensus 122 p~~lk~GvneVtKaIekgKAqLVVIA~DvdP-------------------------------------------ielv~~ 158 (255)
T 4a17_F 122 PIVLKYGLNHITTLIENKQAKLVVIAHDVDP-------------------------------------------IELVIF 158 (255)
T ss_dssp CCCEEECHHHHHHHHHTSCCSEEEEESCCSS-------------------------------------------THHHHH
T ss_pred CceeecchHHHHHHHHcCCceEEEEeCCCCh-------------------------------------------HHHHHH
Confidence 3456789999999999999999999988531 223445
Q ss_pred HHHHHHhcCCEEEEeCCCCchHH
Q psy9094 153 LANNYKSFGATLEIITDKSQEGS 175 (185)
Q Consensus 153 l~e~a~~~g~~v~ivs~~~e~G~ 175 (185)
|-.+|+.+|.-..+|.+..+-|.
T Consensus 159 LPaLCee~~VPY~~V~sK~~LG~ 181 (255)
T 4a17_F 159 LPQLCRKNDVPFAFVKGKAALGK 181 (255)
T ss_dssp HHHHHHHTTCCEEEESCHHHHHH
T ss_pred HHHHHHHcCCCEEEECCHHHHHH
Confidence 55677777777777777665555
No 42
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=79.29 E-value=1 Score=33.42 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=8.8
Q ss_pred EeecCCCCcee
Q psy9094 107 VLKNHSTSEDR 117 (185)
Q Consensus 107 ~~~c~~~~~~~ 117 (185)
.|+|.+||...
T Consensus 70 ~~~C~~CG~~~ 80 (139)
T 3a43_A 70 VFKCRNCNYEW 80 (139)
T ss_dssp EEEETTTCCEE
T ss_pred cEECCCCCCEE
Confidence 58999999643
No 43
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=76.19 E-value=2 Score=33.35 Aligned_cols=46 Identities=11% Similarity=-0.114 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcch
Q psy9094 81 EDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVEL 141 (185)
Q Consensus 81 ~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~ 141 (185)
...++.++.|.+=.- ++ -..|+|+.||.... +.++ +..||.||.+-
T Consensus 136 ~~~l~~l~~~~~~~~---~~----~~~~~C~~CG~~~~----g~~~----p~~CP~C~~~k 181 (191)
T 1lko_A 136 LDFARNIKEGRVFLR---EQ----ATKWRCRNCGYVHE----GTGA----PELCPACAHPK 181 (191)
T ss_dssp HHHHHHHHHTCSSEE---EE----EEEEEETTTCCEEE----EEEC----CSBCTTTCCBG
T ss_pred HHHHHhhhccccccc---CC----CceEEECCCCCEee----CCCC----CCCCCCCcCCH
Confidence 445556666664221 11 12599999997533 1111 12699999863
No 44
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=74.02 E-value=6.1 Score=31.83 Aligned_cols=28 Identities=11% Similarity=0.235 Sum_probs=24.6
Q ss_pred CceEecHHHHHHHHHcC--CccEEEeeccC
Q psy9094 74 GKYCFGVEDTLRALELG--SVETLICWENL 101 (185)
Q Consensus 74 ~~~~yG~~ev~~Ale~G--aV~~Llv~d~l 101 (185)
...+||...|.+|++.| .+++|+++++.
T Consensus 12 ~~~veG~~~V~eal~~~~~~i~~l~~~~~~ 41 (253)
T 1gz0_A 12 SEMIYGIHAVQALLERAPERFQEVFILKGR 41 (253)
T ss_dssp CEEEESHHHHHHHHHSCGGGEEEEEEESSC
T ss_pred cEEEEEHHHHHHHHhcCCCCeEEEEEECCc
Confidence 46899999999999998 58999999874
No 45
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=73.76 E-value=2.6 Score=31.31 Aligned_cols=59 Identities=22% Similarity=0.208 Sum_probs=39.3
Q ss_pred cHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhhhccccHHHHHHHHHH
Q psy9094 79 GVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYK 158 (185)
Q Consensus 79 G~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~v~~l~e~a~ 158 (185)
|+...+..+..|.|++|||++ +.+- . ++..+.+.+...
T Consensus 54 ~l~~ll~~~~~g~id~vvv~~-ldRL------~-----------------------------------R~~~~~l~~~l~ 91 (154)
T 3lhk_A 54 NYKKLLKMVMNRKVEKVIIAY-PDRL------T-----------------------------------RFGFETLKEFFK 91 (154)
T ss_dssp HHHHHHHHHHTTCEEEEEESS-HHHH------C-----------------------------------SSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEEEe-CCcc------c-----------------------------------ccHHHHHHHHHH
Confidence 577888889999999998875 3321 0 112344446678
Q ss_pred hcCCEEEEeCC--CCchHHHHhh
Q psy9094 159 SFGATLEIITD--KSQEGSQFVR 179 (185)
Q Consensus 159 ~~g~~v~ivs~--~~e~G~~l~~ 179 (185)
..|..++++.. .++.|..+..
T Consensus 92 ~~gv~~~~~~~d~~~~~~~l~~~ 114 (154)
T 3lhk_A 92 SYGTEIVIINKKHKTPQEELVED 114 (154)
T ss_dssp HTTCEEEESCSSCCCCHHHHHHH
T ss_pred HCCCEEEEEeCCCCCcHHHHHHH
Confidence 89999999875 3446664433
No 46
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=72.63 E-value=9.7 Score=29.07 Aligned_cols=75 Identities=7% Similarity=0.081 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhCCCceEecHHHHHHHH--HcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCcc
Q psy9094 60 NKMGKYFDEISQDTGKYCFGVEDTLRAL--ELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKET 137 (185)
Q Consensus 60 ~lve~f~~~l~~~~~~~~yG~~ev~~Al--e~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~ 137 (185)
+.+.+.++... ..+...-|..++.+|+ +.|.+...++..|....
T Consensus 21 ~al~evLk~A~-~~~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~--------------------------------- 66 (165)
T 2kg4_A 21 DALEEVLSKAL-SQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDD--------------------------------- 66 (165)
T ss_dssp HHHHHHHHHHH-HHTCEEECGGGHHHHHHHCTTTEEEEEEECCTGGG---------------------------------
T ss_pred HHHHHHHHHHH-HcCCeeecHHHHHHHHhcCCCcEEEEEEeCCCCcc---------------------------------
Confidence 34445555554 3478899999999999 99999999999875311
Q ss_pred CcchhhhccccH-----HHHHHHHHHhcCCEEEEeCCCCchHHHH
Q psy9094 138 GVELELVECQPL-----LEWLANNYKSFGATLEIITDKSQEGSQF 177 (185)
Q Consensus 138 g~~~~~~e~~~~-----v~~l~e~a~~~g~~v~ivs~~~e~G~~l 177 (185)
.++ +..+...+.+.+..+..|++...-|+..
T Consensus 67 ---------~~i~~hi~~~li~alC~E~~Ip~i~V~s~k~LG~a~ 102 (165)
T 2kg4_A 67 ---------RDVALQIHFTLIQAFCCENDINILRVSNPGRLAELL 102 (165)
T ss_dssp ---------GCHHHHHHHHHHHHHHHHTTCCEEEESCHHHHHHHH
T ss_pred ---------chhhhhccHHHHHHHHHHcCCCEEEECCHHHHHHHH
Confidence 110 1124468888999999999887777744
No 47
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=69.28 E-value=3.7 Score=30.13 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=17.7
Q ss_pred cHHHHHHHHHcCCccEEEeec
Q psy9094 79 GVEDTLRALELGSVETLICWE 99 (185)
Q Consensus 79 G~~ev~~Ale~GaV~~Llv~d 99 (185)
|+...++.+..|.|++|+|++
T Consensus 51 ~l~~ll~~~~~g~id~vvv~~ 71 (143)
T 3ilx_A 51 GFLKLLRMILNNEVSRVITAY 71 (143)
T ss_dssp HHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHHhCCCCEEEEEe
Confidence 567888888999999998875
No 48
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=69.27 E-value=1.8 Score=31.27 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=40.6
Q ss_pred cHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhhhccccHHHHHHHHHH
Q psy9094 79 GVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYK 158 (185)
Q Consensus 79 G~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~v~~l~e~a~ 158 (185)
|+...++.++.|.+++|+|++==...| ...+....+.+...
T Consensus 59 ~l~~ll~~~~~g~~d~lvv~~ldRl~R---------------------------------------~~~~~~~~~~~~l~ 99 (138)
T 3bvp_A 59 AMQRLINDIENKAFDTVLVYKLDRLSR---------------------------------------SVRDTLYLVKDVFT 99 (138)
T ss_dssp HHHHHHHGGGGTSCSEEEESSHHHHCS---------------------------------------CHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCcccc---------------------------------------cHHHHHHHHHHHHH
Confidence 566778888899999988876211111 11221234566778
Q ss_pred hcCCEEEEeCCC----CchHHHHhhhcC
Q psy9094 159 SFGATLEIITDK----SQEGSQFVRGFG 182 (185)
Q Consensus 159 ~~g~~v~ivs~~----~e~G~~l~~~~G 182 (185)
+.|..++++... ++.|+.++.-++
T Consensus 100 ~~gv~l~~~~~~~d~~~~~~~~~~~i~~ 127 (138)
T 3bvp_A 100 KNKIDFISLNESIDTSSAMGSLFLTILS 127 (138)
T ss_dssp GGTCEEEETTTTEETTSHHHHHHHHHHH
T ss_pred HCCCEEEEecCCCCCCCcchHHHHHHHH
Confidence 899999988654 466765544333
No 49
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=66.02 E-value=5.1 Score=29.66 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=36.0
Q ss_pred cHHHHHHHHHcCC--ccEEEeeccCcc-eeeEeecCCCCceeEEeeCccccccCCccccCccCcchhhhccccHHHHHHH
Q psy9094 79 GVEDTLRALELGS--VETLICWENLDI-QRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLAN 155 (185)
Q Consensus 79 G~~ev~~Ale~Ga--V~~Llv~d~l~~-~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~v~~l~e 155 (185)
|+...+++++.|. +++|||++ +.+ .| ...+++ .+++
T Consensus 61 ~l~~ll~~~~~g~~~~d~lvv~~-ldRl~R---------------------------------------~~~~~~-~~~~ 99 (167)
T 3guv_A 61 QFNRMMEDIKSGKDGVSFVLVFK-LSRFAR---------------------------------------NAADVL-STLQ 99 (167)
T ss_dssp HHHHHHHHHHTCTTCCSEEEESC-GGGTCS---------------------------------------SHHHHH-HHHH
T ss_pred HHHHHHHHHHcCCCCccEEEEEe-CchhcC---------------------------------------CHHHHH-HHHH
Confidence 6778889999999 99998874 432 11 112233 3556
Q ss_pred HHHhcCCEEEEeCCC
Q psy9094 156 NYKSFGATLEIITDK 170 (185)
Q Consensus 156 ~a~~~g~~v~ivs~~ 170 (185)
...+.|..|+++...
T Consensus 100 ~l~~~gv~l~~~~~~ 114 (167)
T 3guv_A 100 IMQDYGVNLICVEDG 114 (167)
T ss_dssp HHHHTTCEEEETTTT
T ss_pred HHHHCCCEEEEeeCC
Confidence 778999999998875
No 50
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=65.91 E-value=4.5 Score=29.99 Aligned_cols=21 Identities=5% Similarity=0.134 Sum_probs=17.3
Q ss_pred cHHHHHHHHHcCCccEEEeec
Q psy9094 79 GVEDTLRALELGSVETLICWE 99 (185)
Q Consensus 79 G~~ev~~Ale~GaV~~Llv~d 99 (185)
|+...+++++.|.|++|||++
T Consensus 63 ~l~~ll~~~~~g~id~vvv~~ 83 (169)
T 3g13_A 63 DFQRMINDCMNGEIDMVFTKS 83 (169)
T ss_dssp HHHHHHHHHHTTCCSEEEESC
T ss_pred HHHHHHHHHHcCCCcEEEEEe
Confidence 456788899999999988874
No 51
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=65.54 E-value=3.1 Score=27.29 Aligned_cols=30 Identities=13% Similarity=0.039 Sum_probs=19.2
Q ss_pred eeEeecCCCCceeEEeeCccccccCCccccCccCcch
Q psy9094 105 RYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVEL 141 (185)
Q Consensus 105 r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~ 141 (185)
.+.|+|.+||..... . .. ....||.||.+.
T Consensus 26 ~v~Y~C~~CG~~~e~-~-~~-----d~irCp~CG~RI 55 (70)
T 1twf_L 26 TLKYICAECSSKLSL-S-RT-----DAVRCKDCGHRI 55 (70)
T ss_dssp CCCEECSSSCCEECC-C-TT-----STTCCSSSCCCC
T ss_pred eEEEECCCCCCccee-C-CC-----CCccCCCCCceE
Confidence 567999999963222 1 11 134699999854
No 52
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=65.50 E-value=15 Score=30.06 Aligned_cols=28 Identities=7% Similarity=0.010 Sum_probs=24.1
Q ss_pred CceEecHHHHHHHHHcC-CccEEEeeccC
Q psy9094 74 GKYCFGVEDTLRALELG-SVETLICWENL 101 (185)
Q Consensus 74 ~~~~yG~~ev~~Ale~G-aV~~Llv~d~l 101 (185)
--.+||...|.+|++.| .+..|+++++.
T Consensus 34 ~flveG~~~V~eaL~~~~~i~~l~~~~~~ 62 (277)
T 3nk6_A 34 TTLIEDTEPLMECIRAGVQFIEVYGSSGT 62 (277)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTS
T ss_pred CEEEEeHHHHHHHHhCCCCeEEEEEeCCc
Confidence 46899999999999998 68888888764
No 53
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=64.22 E-value=3.7 Score=32.16 Aligned_cols=26 Identities=4% Similarity=-0.438 Sum_probs=18.4
Q ss_pred EeecCCCCceeEEeeCccccccCCccccCccCcch
Q psy9094 107 VLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVEL 141 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~ 141 (185)
.|+|+.||+... +. ..+.||.||.+-
T Consensus 171 ~~~C~~CG~i~~----g~-----~p~~CP~C~~~k 196 (202)
T 1yuz_A 171 FHLCPICGYIHK----GE-----DFEKCPICFRPK 196 (202)
T ss_dssp EEECSSSCCEEE----SS-----CCSBCTTTCCBG
T ss_pred EEEECCCCCEEc----Cc-----CCCCCCCCCCCh
Confidence 599999997433 11 135799999863
No 54
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=61.74 E-value=4.2 Score=27.55 Aligned_cols=28 Identities=14% Similarity=-0.012 Sum_probs=17.6
Q ss_pred EeecCCCCceeEEeeCccccccCCccccCccCcc
Q psy9094 107 VLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVE 140 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 140 (185)
.|.||+||...+.-..- ..+.|+.||..
T Consensus 27 ~y~Cp~CG~~~v~r~at------GiW~C~~Cg~~ 54 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGT------GIWQCSYCDYK 54 (83)
T ss_dssp CEECSSSCCEEEEEEET------TEEEETTTCCE
T ss_pred cCcCCCCCCcceeccCC------CeEECCCCCCE
Confidence 47899999643332211 25679999853
No 55
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=59.42 E-value=4.8 Score=25.89 Aligned_cols=32 Identities=9% Similarity=0.102 Sum_probs=20.2
Q ss_pred eEeecCCCCceeEEeeCccccccCCccccCccCcchhhh
Q psy9094 106 YVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELV 144 (185)
Q Consensus 106 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~ 144 (185)
+.|+|.+||.... +++ .....||.||.+.-..
T Consensus 20 v~Y~C~~Cg~~~~--l~~-----~~~iRC~~CG~RILyK 51 (63)
T 3h0g_L 20 MIYLCADCGARNT--IQA-----KEVIRCRECGHRVMYK 51 (63)
T ss_dssp CCCBCSSSCCBCC--CCS-----SSCCCCSSSCCCCCBC
T ss_pred eEEECCCCCCeee--cCC-----CCceECCCCCcEEEEE
Confidence 5699999995322 111 1245799999875333
No 56
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=59.20 E-value=4.9 Score=26.42 Aligned_cols=33 Identities=3% Similarity=-0.000 Sum_probs=18.8
Q ss_pred EeecCCCCceeEEeeCccccccCCccccCccCcchhhhccc
Q psy9094 107 VLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQ 147 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~ 147 (185)
+++|| |+.... .+.. .+.-.|| ||..+++...+
T Consensus 4 vv~C~-C~~~~~--~~~~----~kT~~C~-CG~~~~~~k~r 36 (71)
T 1gh9_A 4 IFRCD-CGRALY--SREG----AKTRKCV-CGRTVNVKDRR 36 (71)
T ss_dssp EEEET-TSCCEE--EETT----CSEEEET-TTEEEECCSSS
T ss_pred EEECC-CCCEEE--EcCC----CcEEECC-CCCeeeeceEE
Confidence 67899 995322 1121 1233699 99877655433
No 57
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=55.95 E-value=6.4 Score=24.24 Aligned_cols=35 Identities=9% Similarity=0.107 Sum_probs=22.2
Q ss_pred EeecCCCCceeEEee--C--ccccccCCccccCccCcch
Q psy9094 107 VLKNHSTSEDRVLHL--T--PEQEKDKSHFTDKETGVEL 141 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~--~--~~~~~~~~~~~c~~~g~~~ 141 (185)
...||+||.....|. + ..++.....|.|..||..+
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 568999997666551 1 1222233467899999764
No 58
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=53.37 E-value=18 Score=29.40 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=24.6
Q ss_pred CceEecHHHHHHHHHcC-CccEEEeeccC
Q psy9094 74 GKYCFGVEDTLRALELG-SVETLICWENL 101 (185)
Q Consensus 74 ~~~~yG~~ev~~Ale~G-aV~~Llv~d~l 101 (185)
--.+||...|.+|++.| .+++|+++++.
T Consensus 28 ~f~veG~~~v~eal~~~~~i~~l~~~~~~ 56 (274)
T 1ipa_A 28 RFLIEGAREIERALQAGIELEQALVWEGG 56 (274)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTC
T ss_pred eEEEEeHHHHHHHHhCCCCeEEEEEEcCc
Confidence 46799999999999988 58999999875
No 59
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=50.35 E-value=29 Score=24.18 Aligned_cols=56 Identities=9% Similarity=0.029 Sum_probs=40.6
Q ss_pred CceEecHHHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcchhhhccccHHHHH
Q psy9094 74 GKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWL 153 (185)
Q Consensus 74 ~~~~yG~~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~v~~l 153 (185)
|.-+||.++..+.++...|+.++|+-.... ......+
T Consensus 48 g~pV~g~~~l~~~~~~~~id~viia~~~~~-------------------------------------------~~~~~~i 84 (141)
T 3nkl_A 48 GITIYRPKYLERLIKKHCISTVLLAVPSAS-------------------------------------------QVQKKVI 84 (141)
T ss_dssp TEEEECGGGHHHHHHHHTCCEEEECCTTSC-------------------------------------------HHHHHHH
T ss_pred CeEEECHHHHHHHHHHCCCCEEEEeCCCCC-------------------------------------------HHHHHHH
Confidence 566888888888888888888887642110 1134567
Q ss_pred HHHHHhcCCEEEEeCCCCc
Q psy9094 154 ANNYKSFGATLEIITDKSQ 172 (185)
Q Consensus 154 ~e~a~~~g~~v~ivs~~~e 172 (185)
++.+.+.|.+|.++|+-.+
T Consensus 85 ~~~l~~~gv~v~~vP~~~~ 103 (141)
T 3nkl_A 85 IESLAKLHVEVLTIPNLDD 103 (141)
T ss_dssp HHHHHTTTCEEEECCCHHH
T ss_pred HHHHHHcCCeEEECCCHHH
Confidence 7889999999999998643
No 60
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=49.71 E-value=17 Score=23.50 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=20.7
Q ss_pred EeecCCCCceeEEeeCccccccCCccccCccCcc
Q psy9094 107 VLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVE 140 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 140 (185)
-.+|++|+..++.|-.+. +.-.|..||..
T Consensus 7 ~VKCp~C~niq~VFShA~-----tvV~C~~Cg~~ 35 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPS-----TIVKCIICGRT 35 (66)
T ss_dssp EEECTTTCCEEEEESSCS-----SCEECSSSCCE
T ss_pred EEECCCCCCceEEEecCc-----eEEEcccCCCE
Confidence 468999999998883222 12359999975
No 61
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=49.37 E-value=5.4 Score=24.28 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=20.9
Q ss_pred eecCCCCceeEEeeC---c-cccccCCccccCccCcch
Q psy9094 108 LKNHSTSEDRVLHLT---P-EQEKDKSHFTDKETGVEL 141 (185)
Q Consensus 108 ~~c~~~~~~~~~~~~---~-~~~~~~~~~~c~~~g~~~ 141 (185)
..|++|+.....|.. + .|+.....|.|.+||..+
T Consensus 10 ~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp SCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred cCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence 479999966665521 1 223333466899998765
No 62
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=49.01 E-value=8.4 Score=24.49 Aligned_cols=25 Identities=8% Similarity=-0.118 Sum_probs=16.0
Q ss_pred eecCCCCceeEEeeCccccccCCccccCccCcchhhh
Q psy9094 108 LKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELV 144 (185)
Q Consensus 108 ~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~ 144 (185)
.+|++|+.-+. +..||.||+++...
T Consensus 7 r~C~~CgvYTL------------k~~CP~CG~~T~~~ 31 (60)
T 2apo_B 7 KKCPKCGLYTL------------KEICPKCGEKTVIP 31 (60)
T ss_dssp EECTTTCCEES------------SSBCSSSCSBCBCC
T ss_pred eeCCCCCCEec------------cccCcCCCCcCCCC
Confidence 57999983111 23589999876544
No 63
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=48.98 E-value=6.2 Score=27.95 Aligned_cols=33 Identities=6% Similarity=-0.212 Sum_probs=20.7
Q ss_pred EEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcch
Q psy9094 94 TLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVEL 141 (185)
Q Consensus 94 ~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~ 141 (185)
.|+|.+ ++|.+||+.. .++- ...-.||.|++..
T Consensus 62 ~L~v~p--------~~C~~CG~~F---~~~~----~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 62 VLLIKP--------AQCRKCGFVF---KAEI----NIPSRCPKCKSEW 94 (105)
T ss_dssp EEEECC--------CBBTTTCCBC---CCCS----SCCSSCSSSCCCC
T ss_pred EEEEEC--------cChhhCcCee---cccC----CCCCCCcCCCCCc
Confidence 666654 6899999742 1111 1233699999864
No 64
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=48.71 E-value=14 Score=22.02 Aligned_cols=32 Identities=6% Similarity=-0.048 Sum_probs=17.8
Q ss_pred EeecCCCCceeEEeeCcccc----ccCCccccCccCcc
Q psy9094 107 VLKNHSTSEDRVLHLTPEQE----KDKSHFTDKETGVE 140 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~----~~~~~~~c~~~g~~ 140 (185)
.|+|..||..-. .+.+++ ..+..+.||.||.+
T Consensus 4 ~y~C~vCGyvyd--~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYD--PAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEEC--GGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EEECCCCCeEEe--CCcCCCcchhhCCCCCcCcCCCCc
Confidence 489999996211 111110 11224679999975
No 65
>3pkz_A Recombinase SIN; small serine recombinase, resolvase, DNA, recombination; 1.80A {Staphylococcus aureus}
Probab=48.44 E-value=3.4 Score=29.31 Aligned_cols=18 Identities=22% Similarity=0.058 Sum_probs=14.3
Q ss_pred HHHHHHHhcCCEEEEeCC
Q psy9094 152 WLANNYKSFGATLEIITD 169 (185)
Q Consensus 152 ~l~e~a~~~g~~v~ivs~ 169 (185)
.+++...+.|..++++..
T Consensus 76 ~~~~~l~~~gv~l~~~~~ 93 (124)
T 3pkz_A 76 HTVNYLKDKEVQLMITSL 93 (124)
T ss_dssp HHHHHHHHTTCEEEETTC
T ss_pred HHHHHHHHCCCEEEEecC
Confidence 456677889999999874
No 66
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=47.74 E-value=7.6 Score=32.38 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=23.7
Q ss_pred eecCCCCceeEEeeC---c-cccccCCccccCccCcchh
Q psy9094 108 LKNHSTSEDRVLHLT---P-EQEKDKSHFTDKETGVELE 142 (185)
Q Consensus 108 ~~c~~~~~~~~~~~~---~-~~~~~~~~~~c~~~g~~~~ 142 (185)
+.|+.||.....|.+ . .++.....|.|..||.+|.
T Consensus 269 ~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 269 FTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred ccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 579999977776622 1 2333445778999998764
No 67
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=47.41 E-value=7.3 Score=29.95 Aligned_cols=35 Identities=11% Similarity=0.048 Sum_probs=23.4
Q ss_pred eecCCCCceeEEeeC---c-cccccCCccccCccCcchh
Q psy9094 108 LKNHSTSEDRVLHLT---P-EQEKDKSHFTDKETGVELE 142 (185)
Q Consensus 108 ~~c~~~~~~~~~~~~---~-~~~~~~~~~~c~~~g~~~~ 142 (185)
..|+.||.....|.. . .++.....|.|..||..+.
T Consensus 138 ~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 138 FTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred cCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 469999976666622 1 2334445778999998764
No 68
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=44.59 E-value=9.4 Score=23.12 Aligned_cols=30 Identities=17% Similarity=-0.033 Sum_probs=15.7
Q ss_pred EeecCCCCceeEEeeCccccccCCccccCccCcc
Q psy9094 107 VLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVE 140 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 140 (185)
+|+|-+||.... .++...-+...||.||=+
T Consensus 3 iY~C~rCg~~fs----~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 3 VYRCGKCWKTFT----DEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp --CCCCTTTTCC----CCCSCCCSSSCCTTTCCS
T ss_pred EEEeeccCCCcc----HHHHhhCCCcccCccCcE
Confidence 478999995211 112212234579999955
No 69
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=42.31 E-value=18 Score=24.16 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=18.4
Q ss_pred eeEeecCCCCceeEEeeCccccccCCccccCccCcc
Q psy9094 105 RYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVE 140 (185)
Q Consensus 105 r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 140 (185)
+|+++|..|-... .+.++..||.||..
T Consensus 13 ~~iLrC~aCf~~t---------~~~~k~FCp~CGn~ 39 (79)
T 2con_A 13 SYILRCHGCFKTT---------SDMNRVFCGHCGNK 39 (79)
T ss_dssp CEEEECSSSCCEE---------SCSSCCSCSSSCCS
T ss_pred eeeeEecccceEC---------CCcccccccccCcc
Confidence 5789999988521 12235569999964
No 70
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.93 E-value=26 Score=22.42 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=20.5
Q ss_pred EeecCCCCceeEEeeCccccccCCccccCccCcc
Q psy9094 107 VLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVE 140 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 140 (185)
-.+|++|+..++.|-.+. +.-.|..||..
T Consensus 15 ~VkCp~C~~~q~VFSha~-----t~V~C~~Cgt~ 43 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSHPA-----TKVRCLICGAT 43 (63)
T ss_dssp EEECSSSCCEEEEESSCS-----SCEECSSSCCE
T ss_pred EEECCCCCCeeEEEecCC-----eEEEccCcCCE
Confidence 478999999888882222 12359999964
No 71
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=41.53 E-value=13 Score=23.50 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=14.3
Q ss_pred eecCCCCceeEEeeCccccccCCccccCccC
Q psy9094 108 LKNHSTSEDRVLHLTPEQEKDKSHFTDKETG 138 (185)
Q Consensus 108 ~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g 138 (185)
..|++||.. ..++..|+.||
T Consensus 31 ~~c~~cGe~-----------~~~H~vc~~CG 50 (60)
T 3v2d_5 31 VPCPECKAM-----------KPPHTVCPECG 50 (60)
T ss_dssp EECTTTCCE-----------ECTTSCCTTTC
T ss_pred eECCCCCCe-----------ecceEEcCCCC
Confidence 568999942 23466799998
No 72
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=40.86 E-value=20 Score=24.98 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhhcCCCCccEEEEeCChhh
Q psy9094 9 RKVAEVATTLFITNDKPNIAGLILAGSADF 38 (185)
Q Consensus 9 k~va~~~~~~f~~~~~~~i~~lIIaGPg~~ 38 (185)
++||+.+.+.+-. ..-+..+-++||||.
T Consensus 59 ~~iA~~i~~~l~~--~~~i~~vevagpGFI 86 (109)
T 3gdz_A 59 RQLAEQVLSHLDL--NGIANKVEIAGPGFI 86 (109)
T ss_dssp HHHHHHHHHHCCC--TTTEEEEEEETTTEE
T ss_pred HHHHHHHHHhcCc--CCcEeEEEEeCCCeE
Confidence 4677766655531 245889999999976
No 73
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=40.05 E-value=78 Score=20.84 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhCCCceEecHHHHHHHHHcCCc
Q psy9094 60 NKMGKYFDEISQDTGKYCFGVEDTLRALELGSV 92 (185)
Q Consensus 60 ~lve~f~~~l~~~~~~~~yG~~ev~~Ale~GaV 92 (185)
++++.|.+.+. +......++...++..|..
T Consensus 2 ~~~~~y~~~~~---~~~~~~~~~~~~~~~~~~~ 31 (118)
T 1zma_A 2 NAMEQFLDNIK---DLEVTTVVRAQEALDKKET 31 (118)
T ss_dssp HHHHHHHHHTT---TSEECCHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHh---hhhcCCHHHHHHHHhCCCe
Confidence 35667766664 3556677888888887753
No 74
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=39.23 E-value=15 Score=26.37 Aligned_cols=27 Identities=15% Similarity=-0.042 Sum_probs=16.1
Q ss_pred EeecCCCCceeEEeeCccccccCCccccCccCc
Q psy9094 107 VLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGV 139 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~ 139 (185)
.|.||.||...+.-..-+ -+.|+.|+.
T Consensus 60 kytCPfCGk~~vKR~avG------IW~C~~Cgk 86 (116)
T 3cc2_Z 60 DHACPNCGEDRVDRQGTG------IWQCSYCDY 86 (116)
T ss_dssp CEECSSSCCEEEEEEETT------EEEETTTCC
T ss_pred CCcCCCCCCceeEecCce------eEECCCCCC
Confidence 367888886544432211 456888874
No 75
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=38.68 E-value=13 Score=26.27 Aligned_cols=35 Identities=3% Similarity=-0.035 Sum_probs=23.7
Q ss_pred EeecCCCCceeEEeeC----ccccccCCccccCccCcch
Q psy9094 107 VLKNHSTSEDRVLHLT----PEQEKDKSHFTDKETGVEL 141 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~----~~~~~~~~~~~c~~~g~~~ 141 (185)
...|++||.....|.+ ..++.....|.|..||..+
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w 110 (113)
T 3h0g_I 72 DKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAF 110 (113)
T ss_dssp CSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCC
T ss_pred ccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEE
Confidence 4789999976666622 1233444567899999875
No 76
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.70 E-value=20 Score=21.70 Aligned_cols=26 Identities=4% Similarity=-0.079 Sum_probs=14.1
Q ss_pred eecCCCCceeEEeeCccccccCCccccCccCc
Q psy9094 108 LKNHSTSEDRVLHLTPEQEKDKSHFTDKETGV 139 (185)
Q Consensus 108 ~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~ 139 (185)
-.||.||....+.. +...+.|+.||-
T Consensus 20 k~CP~CG~~~fm~~------~~~R~~C~kCG~ 45 (50)
T 3j20_Y 20 KFCPRCGPGVFMAD------HGDRWACGKCGY 45 (50)
T ss_dssp EECSSSCSSCEEEE------CSSEEECSSSCC
T ss_pred ccCCCCCCceEEec------CCCeEECCCCCC
Confidence 45888885333321 112446888773
No 77
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=37.48 E-value=9.7 Score=30.94 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=23.3
Q ss_pred eecCCCCceeE-EeeCccccccCCccccCccCcchhhhcccc
Q psy9094 108 LKNHSTSEDRV-LHLTPEQEKDKSHFTDKETGVELELVECQP 148 (185)
Q Consensus 108 ~~c~~~~~~~~-~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~ 148 (185)
..||+||.... .|.....+ .-|.|+.|++..|+.+...
T Consensus 35 ~yCPnCG~~~l~~f~nN~PV---aDF~C~~C~EeyELKSk~~ 73 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPV---ADFYCNHCSEEFELKSKKG 73 (257)
T ss_dssp CCCTTTCCSSCEEC----CC---CEEECTTTCCEEEEEEEES
T ss_pred CcCCCCCChhhhhccCCCcc---cccccCCcchhheeccccC
Confidence 47999996433 33211111 1467999999988877653
No 78
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=36.68 E-value=14 Score=21.96 Aligned_cols=28 Identities=4% Similarity=-0.026 Sum_probs=16.9
Q ss_pred eecCCCCceeEEeeCccccccCCccccCccCcc
Q psy9094 108 LKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVE 140 (185)
Q Consensus 108 ~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 140 (185)
+.||.|+.....+... +....|+.||--
T Consensus 6 ~~CP~C~~~~l~~d~~-----~gelvC~~CG~v 33 (50)
T 1pft_A 6 KVCPACESAELIYDPE-----RGEIVCAKCGYV 33 (50)
T ss_dssp CSCTTTSCCCEEEETT-----TTEEEESSSCCB
T ss_pred EeCcCCCCcceEEcCC-----CCeEECcccCCc
Confidence 5799998644444211 124568999853
No 79
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=35.65 E-value=28 Score=23.36 Aligned_cols=31 Identities=3% Similarity=-0.033 Sum_probs=18.5
Q ss_pred EeecCCCCceeEEee-Ccccc-----------ccCCccccCccCcc
Q psy9094 107 VLKNHSTSEDRVLHL-TPEQE-----------KDKSHFTDKETGVE 140 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~-~~~~~-----------~~~~~~~c~~~g~~ 140 (185)
.|+|..||.. |- +.+++ ..+..|.||.||.+
T Consensus 27 ~y~C~vCGyv---YD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFE---YDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCE---EETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eEEeCCCCEE---EcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 5999999963 31 11110 12235679999975
No 80
>2gm5_A Transposon gamma-delta resolvase; site specific recombination, recombin; 2.10A {Escherichia coli} PDB: 2rsl_A 1gdr_A 1ght_A 1hx7_A
Probab=35.16 E-value=27 Score=25.02 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCEEEEeCCC----CchHHHHhh
Q psy9094 152 WLANNYKSFGATLEIITDK----SQEGSQFVR 179 (185)
Q Consensus 152 ~l~e~a~~~g~~v~ivs~~----~e~G~~l~~ 179 (185)
.+++...+.|..+.++... ++.|..++.
T Consensus 77 ~~~~~l~~~gv~l~~~~~~~d~~~~~~~~~~~ 108 (139)
T 2gm5_A 77 QLIKEFDAQGVSIRFIDDGISTDSYIGKMVVT 108 (139)
T ss_dssp HHHHHHHHTTCEEEETTTTEETTSHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEecCCccCCChhHHHHHH
Confidence 3556788999999988754 445654433
No 81
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=34.88 E-value=21 Score=22.47 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=14.5
Q ss_pred eecCCCCceeEEeeCccccccCCccccCccCc
Q psy9094 108 LKNHSTSEDRVLHLTPEQEKDKSHFTDKETGV 139 (185)
Q Consensus 108 ~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~ 139 (185)
..|++||.. ...+..||.||-
T Consensus 31 ~~c~~cG~~-----------~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 31 TECPQCHGK-----------KLSHHICPNCGY 51 (60)
T ss_dssp EECTTTCCE-----------ECTTBCCTTTCB
T ss_pred eECCCCCCE-----------eCCceEcCCCCc
Confidence 468999952 224667999983
No 82
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=32.89 E-value=19 Score=22.79 Aligned_cols=24 Identities=17% Similarity=0.004 Sum_probs=14.7
Q ss_pred eecCCCCceeEEeeCccccccCCccccCccCcchhh
Q psy9094 108 LKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELEL 143 (185)
Q Consensus 108 ~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~ 143 (185)
.+|++||.-+ + ...||.||++...
T Consensus 6 r~C~~Cg~YT---L---------k~~CP~CG~~t~~ 29 (60)
T 2aus_D 6 RKCPKCGRYT---L---------KETCPVCGEKTKV 29 (60)
T ss_dssp EECTTTCCEE---S---------SSBCTTTCSBCEE
T ss_pred eECCCCCCEE---c---------cccCcCCCCccCC
Confidence 4799998311 1 2248888876543
No 83
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.81 E-value=20 Score=24.66 Aligned_cols=9 Identities=33% Similarity=0.220 Sum_probs=5.5
Q ss_pred cCccCcchh
Q psy9094 134 DKETGVELE 142 (185)
Q Consensus 134 c~~~g~~~~ 142 (185)
||-||.++.
T Consensus 50 CPvCgs~l~ 58 (112)
T 1l8d_A 50 CPVCGRELT 58 (112)
T ss_dssp CTTTCCEEC
T ss_pred CCCCCCcCC
Confidence 666666554
No 84
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=32.51 E-value=39 Score=21.88 Aligned_cols=10 Identities=10% Similarity=-0.018 Sum_probs=8.1
Q ss_pred ccccCccCcc
Q psy9094 131 HFTDKETGVE 140 (185)
Q Consensus 131 ~~~c~~~g~~ 140 (185)
.|.||.||.+
T Consensus 40 dw~CP~Cga~ 49 (70)
T 1dx8_A 40 SFMCPACRSP 49 (70)
T ss_dssp TCBCTTTCCB
T ss_pred CCcCCCCCCC
Confidence 5679999975
No 85
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=32.31 E-value=37 Score=27.44 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=18.5
Q ss_pred eEeecCCCCceeEEeeCccccccCCccccCccCcc
Q psy9094 106 YVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVE 140 (185)
Q Consensus 106 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 140 (185)
.+|.|..|+............+ ....||.|+..
T Consensus 133 ~~f~C~~C~~~~~v~~~~~~~~--~P~~Cp~C~~~ 165 (279)
T 1ltl_A 133 AVFECRGCMRHHAVTQSTNMIT--EPSLCSECGGR 165 (279)
T ss_dssp EEEEETTTCCEEEEECSSSSCC--CCSCCTTTCCC
T ss_pred EEEEcCCCCCEEEEEecCCccc--CCCcCCCCCCC
Confidence 4789999995432212211111 12369999875
No 86
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=31.83 E-value=51 Score=22.16 Aligned_cols=43 Identities=7% Similarity=-0.021 Sum_probs=29.1
Q ss_pred EeecCCCCceeEEeeCccccccCCccccCccCcchhhhccccHHHHHHHHHHhcCCEEEEeCC
Q psy9094 107 VLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITD 169 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs~ 169 (185)
-.+|++|+..++.|--+. +.-.|..||.. +++-+||+..+..+
T Consensus 34 ~VkCp~C~~~q~VFSha~-----t~V~C~~Cg~~---------------L~~PTGGKa~l~eg 76 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSHAQ-----TAVTCESCSTI---------------LCTPTGGKAKLSEG 76 (82)
T ss_dssp EEECTTSCSCEEEESBCS-----SCCCCSSSCCC---------------CEECCSSBCEECSS
T ss_pred EEECCCCCCeeEEEecCC-----eEEEccccCCE---------------EeccCCCCeEecCC
Confidence 479999999888882222 13359999964 45667777666544
No 87
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=31.41 E-value=27 Score=21.50 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=8.4
Q ss_pred ccccCccCcch
Q psy9094 131 HFTDKETGVEL 141 (185)
Q Consensus 131 ~~~c~~~g~~~ 141 (185)
.+.||.||.+-
T Consensus 36 dw~CP~Cga~K 46 (55)
T 2v3b_B 36 DWVCPDCGVGK 46 (55)
T ss_dssp TCCCTTTCCCG
T ss_pred CCcCCCCCCCH
Confidence 56799999753
No 88
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=31.33 E-value=48 Score=20.11 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=8.4
Q ss_pred CccccCccCcc
Q psy9094 130 SHFTDKETGVE 140 (185)
Q Consensus 130 ~~~~c~~~g~~ 140 (185)
..+.||.||.+
T Consensus 34 ~dw~CP~Cg~~ 44 (52)
T 1yk4_A 34 DDWVCPLCGAP 44 (52)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCCCCCCC
Confidence 35679999975
No 89
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=31.33 E-value=25 Score=23.68 Aligned_cols=42 Identities=12% Similarity=0.104 Sum_probs=29.1
Q ss_pred EeecCCCCceeEEeeCccccccCCccccCccCcchhhhccccHHHHHHHHHHhcCCEEEEeC
Q psy9094 107 VLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIIT 168 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~v~~l~e~a~~~g~~v~ivs 168 (185)
-.+|+.|+.+++.|-.+. +.-.|..||.. +++-+||+..|..
T Consensus 32 ~VkCp~C~n~q~VFShA~-----t~V~C~~Cg~~---------------L~~PTGGKA~l~e 73 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFSNAQ-----STIICEKCSAI---------------LCKPTGGKVQIQA 73 (81)
T ss_dssp EEECSSSCCEEEEETTCS-----SCEECSSSCCE---------------EEEECSSCEEECS
T ss_pred EeECCCCCCeeEEEecCc-----cEEEccCCCCE---------------EeecCCCCeEecC
Confidence 469999999888882222 12359999974 4566777777653
No 90
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=31.00 E-value=47 Score=21.94 Aligned_cols=36 Identities=3% Similarity=-0.187 Sum_probs=19.7
Q ss_pred eeccCcceeeEeecCCCCceeEEeeCccccccCCcc--ccCccCcc
Q psy9094 97 CWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHF--TDKETGVE 140 (185)
Q Consensus 97 v~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~--~c~~~g~~ 140 (185)
+.+++....+...|.+|+.....- ...+ .||.||+.
T Consensus 27 mP~~y~~~~v~I~CnDC~~~s~v~--------~h~lg~kC~~C~Sy 64 (79)
T 2k2d_A 27 MPSEYQNMTVDILCNDCNGRSTVQ--------FHILGMKCKICESY 64 (79)
T ss_dssp ------CCEEEEEESSSCCEEEEE--------CCTTCCCCTTTSCC
T ss_pred CCHHHhCCEeEEECCCCCCCccCC--------ceeecccCcCCCCc
Confidence 566666667788999999533321 0122 69999975
No 91
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=30.49 E-value=25 Score=25.77 Aligned_cols=37 Identities=14% Similarity=0.033 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCccEEEeeccCcceeeEeecCCCCceeEEeeCccccccCCccccCccCcc
Q psy9094 81 EDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVE 140 (185)
Q Consensus 81 ~ev~~Ale~GaV~~Llv~d~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 140 (185)
..=.+|+..|. |++ -+|.+||.. .| .....||.|++.
T Consensus 34 ~~F~~~l~~gr---L~~----------~rC~~CG~~--~~--------PPr~~Cp~C~s~ 70 (145)
T 3irb_A 34 EQFFNGLKQNK---IIG----------SKCSKCGRI--FV--------PARSYCEHCFVK 70 (145)
T ss_dssp HHHHHHHHTTC---CEE----------EECTTTCCE--EE--------SCCSEETTTTEE
T ss_pred HHHHHHHHcCe---EEE----------EEeCCCCcE--Ec--------CchhhCcCCCCC
Confidence 34556677764 222 369999952 22 112359999975
No 92
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=30.25 E-value=34 Score=20.77 Aligned_cols=10 Identities=10% Similarity=0.179 Sum_probs=7.9
Q ss_pred ccccCccCcc
Q psy9094 131 HFTDKETGVE 140 (185)
Q Consensus 131 ~~~c~~~g~~ 140 (185)
.+.||.||.+
T Consensus 36 dw~CP~Cg~~ 45 (52)
T 1e8j_A 36 DWACPVCGAS 45 (52)
T ss_dssp TCCCSSSCCC
T ss_pred CCcCCCCCCc
Confidence 5579999975
No 93
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=30.15 E-value=41 Score=27.43 Aligned_cols=29 Identities=28% Similarity=0.224 Sum_probs=25.2
Q ss_pred CceEecHHHHHHHHHcCC-ccEEEeeccCc
Q psy9094 74 GKYCFGVEDTLRALELGS-VETLICWENLD 102 (185)
Q Consensus 74 ~~~~yG~~ev~~Ale~Ga-V~~Llv~d~l~ 102 (185)
--.+||...|.+|++.|. ++.|+++++..
T Consensus 40 ~f~veG~~~V~eal~~~~~i~~l~~~~~~~ 69 (287)
T 1x7o_A 40 EFLVMGVRPISLAVEHGWPVRTLLYDGQRE 69 (287)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEESSCC
T ss_pred cEEEEeHHHHHHHHhCCCCeEEEEEecCcc
Confidence 467999999999999987 89999998753
No 94
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.04 E-value=61 Score=21.95 Aligned_cols=29 Identities=3% Similarity=-0.129 Sum_probs=20.4
Q ss_pred EeecCCCCceeEEeeCccccccCCccccCccCcc
Q psy9094 107 VLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVE 140 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 140 (185)
-.+|+.|+..++.|-.+. +.-.|..||..
T Consensus 36 ~VkCp~C~~~~~VFShA~-----t~V~C~~Cgtv 64 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQ-----TVVVCPGCQTV 64 (86)
T ss_dssp EEECTTTCCEEEEETTCS-----SCCCCSSSCCC
T ss_pred EEECCCCCCeeEEEecCC-----cEEEccCCCCE
Confidence 378999999888882222 13359999864
No 95
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=28.11 E-value=32 Score=24.18 Aligned_cols=26 Identities=8% Similarity=-0.161 Sum_probs=16.3
Q ss_pred EeecCCCCceeEEeeCccccccCCccccCccC
Q psy9094 107 VLKNHSTSEDRVLHLTPEQEKDKSHFTDKETG 138 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g 138 (185)
.|.||.||...+....-+ -|.|..||
T Consensus 36 ky~CpfCgk~~vKR~a~G------IW~C~kCg 61 (103)
T 4a17_Y 36 KYGCPFCGKVAVKRAAVG------IWKCKPCK 61 (103)
T ss_dssp CEECTTTCCEEEEEEETT------EEEETTTT
T ss_pred CCCCCCCCCceeeecCcc------eEEcCCCC
Confidence 377899987655542222 35688886
No 96
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=27.94 E-value=32 Score=23.36 Aligned_cols=31 Identities=6% Similarity=-0.108 Sum_probs=18.2
Q ss_pred EeecCCCCceeEEeeC-ccc-----------cccCCccccCccCcc
Q psy9094 107 VLKNHSTSEDRVLHLT-PEQ-----------EKDKSHFTDKETGVE 140 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~-~~~-----------~~~~~~~~c~~~g~~ 140 (185)
.|+|..||+. |-. .++ ...+..|.||.||.+
T Consensus 35 ~y~C~vCGyv---YD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 35 KWICITCGHI---YDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp EEEETTTTEE---EETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred eEECCCCCeE---ecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 4899999963 311 110 012235679999975
No 97
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=26.42 E-value=22 Score=25.40 Aligned_cols=37 Identities=3% Similarity=-0.125 Sum_probs=24.1
Q ss_pred eEeecCCCCceeEEeeC---c-cccccCCccccCccCcchh
Q psy9094 106 YVLKNHSTSEDRVLHLT---P-EQEKDKSHFTDKETGVELE 142 (185)
Q Consensus 106 ~~~~c~~~~~~~~~~~~---~-~~~~~~~~~~c~~~g~~~~ 142 (185)
+...|++||.....|.. + .++.....|.|..||..+.
T Consensus 71 t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~ 111 (122)
T 1twf_I 71 SDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFT 111 (122)
T ss_dssp CCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEE
T ss_pred cCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEec
Confidence 35789999976666621 1 2233334678999998764
No 98
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=25.83 E-value=23 Score=34.53 Aligned_cols=9 Identities=0% Similarity=-0.208 Sum_probs=7.8
Q ss_pred EeecCCCCc
Q psy9094 107 VLKNHSTSE 115 (185)
Q Consensus 107 ~~~c~~~~~ 115 (185)
-|+||+|++
T Consensus 502 hy~c~~c~~ 510 (1041)
T 3f2b_A 502 HYVCPNCKH 510 (1041)
T ss_dssp EEECTTTCC
T ss_pred cccCccccc
Confidence 489999996
No 99
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=25.67 E-value=65 Score=19.74 Aligned_cols=10 Identities=20% Similarity=0.205 Sum_probs=8.1
Q ss_pred ccccCccCcc
Q psy9094 131 HFTDKETGVE 140 (185)
Q Consensus 131 ~~~c~~~g~~ 140 (185)
.+.||.||.+
T Consensus 36 dw~CP~Cg~~ 45 (54)
T 4rxn_A 36 DWVCPLCGVG 45 (54)
T ss_dssp TCBCTTTCCB
T ss_pred CCcCcCCCCc
Confidence 5679999975
No 100
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=25.37 E-value=36 Score=25.07 Aligned_cols=23 Identities=9% Similarity=-0.151 Sum_probs=14.6
Q ss_pred eecCCCCceeEEeeCccccccCCccccCccCcc
Q psy9094 108 LKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVE 140 (185)
Q Consensus 108 ~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 140 (185)
.+|.+||.. .| .....||.|++.
T Consensus 48 ~rC~~CG~~--~f--------PPr~~Cp~C~s~ 70 (145)
T 2gnr_A 48 SKCSKCGRI--FV--------PARSYCEHCFVK 70 (145)
T ss_dssp EECTTTCCE--EE--------SCCSEETTTTEE
T ss_pred EEECCCCcE--Ee--------CCCCCCCCCCCC
Confidence 469999952 22 112359999975
No 101
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=25.30 E-value=43 Score=22.45 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=14.7
Q ss_pred eecCCCCceeEEeeCccccccCCccccCccCcchh
Q psy9094 108 LKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELE 142 (185)
Q Consensus 108 ~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~ 142 (185)
+.|+.|+..-.. ...||.||.+++
T Consensus 19 ~~C~~C~~~~~~-----------~afCPeCgq~Le 42 (81)
T 2jrp_A 19 AHCETCAKDFSL-----------QALCPDCRQPLQ 42 (81)
T ss_dssp EECTTTCCEEEE-----------EEECSSSCSCCC
T ss_pred eECccccccCCC-----------cccCcchhhHHH
Confidence 558888842221 125888888765
No 102
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=25.20 E-value=26 Score=28.39 Aligned_cols=27 Identities=4% Similarity=-0.208 Sum_probs=16.7
Q ss_pred ecCCCCceeEEeeCccccccCCccccCccCc
Q psy9094 109 KNHSTSEDRVLHLTPEQEKDKSHFTDKETGV 139 (185)
Q Consensus 109 ~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~ 139 (185)
-|+.||....+.. ...|+.|.||.|..
T Consensus 244 pC~~CG~~I~~~~----~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 244 KCSRCGAEIQKIK----VAGRGTHFCPVCQQ 270 (271)
T ss_dssp BCTTTCCBCEEEE----ETTEEEEECTTTSC
T ss_pred CCCCCCCEeeEEE----ECCCceEECCCCCC
Confidence 4888885444331 12456778998864
No 103
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=24.80 E-value=32 Score=27.82 Aligned_cols=27 Identities=0% Similarity=-0.205 Sum_probs=16.8
Q ss_pred ecCCCCceeEEeeCccccccCCccccCccCc
Q psy9094 109 KNHSTSEDRVLHLTPEQEKDKSHFTDKETGV 139 (185)
Q Consensus 109 ~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~ 139 (185)
-|+.||....+.. ...|+.|.||.|..
T Consensus 237 pC~~CG~~I~~~~----~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 237 PCPACGRPVERRV----VAGRGTHFCPTCQG 263 (266)
T ss_dssp BCTTTCCBCEEEE----SSSCEEEECTTTTT
T ss_pred CCCCCCCEeeEEE----ECCCceEECCCCCC
Confidence 4888885444332 22456778998874
No 104
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=24.55 E-value=42 Score=23.39 Aligned_cols=13 Identities=0% Similarity=-0.279 Sum_probs=9.2
Q ss_pred ccccCccCcchhh
Q psy9094 131 HFTDKETGVELEL 143 (185)
Q Consensus 131 ~~~c~~~g~~~~~ 143 (185)
.+.|+.||+.+--
T Consensus 36 ~~~C~~CGE~~~d 48 (133)
T 3o9x_A 36 GLYCVHCEESIMN 48 (133)
T ss_dssp EEEESSSSCEECC
T ss_pred eeECCCCCCEeec
Confidence 5579999976543
No 105
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=24.50 E-value=17 Score=33.14 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=2.7
Q ss_pred EeecCCCCceeEEeeCccccccCCccccCccCcc
Q psy9094 107 VLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGVE 140 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 140 (185)
.-+|+.||+....-... ..+.||.||+.
T Consensus 540 ~~~C~~CGy~~~~~~~~------~~~~CP~Cg~~ 567 (605)
T 1h7b_A 540 VDKCFTCGSTHEMTPTE------NGFVCSICGET 567 (605)
T ss_dssp EEET------------------------------
T ss_pred CccCcccCCcCccCccc------cCCcCCCCCCC
Confidence 35799999633211000 13579999964
No 106
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=23.85 E-value=28 Score=28.35 Aligned_cols=26 Identities=0% Similarity=-0.178 Sum_probs=15.7
Q ss_pred ecCCCCceeEEeeCccccccCCccccCccC
Q psy9094 109 KNHSTSEDRVLHLTPEQEKDKSHFTDKETG 138 (185)
Q Consensus 109 ~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g 138 (185)
-|+.||....+.. ...|+.|.||.|.
T Consensus 247 pC~~CG~~I~~~~----~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 247 PCKRCGTPIEKTV----VAGRGTHYCPRCQ 272 (273)
T ss_dssp BCTTTCCBCEEEE----ETTEEEEECTTTC
T ss_pred CCCCCCCeEEEEE----ECCCCeEECCCCC
Confidence 5888885443331 1245677788885
No 107
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=23.61 E-value=29 Score=28.14 Aligned_cols=26 Identities=8% Similarity=0.040 Sum_probs=15.4
Q ss_pred ecCCCCceeEEeeCccccccCCccccCccC
Q psy9094 109 KNHSTSEDRVLHLTPEQEKDKSHFTDKETG 138 (185)
Q Consensus 109 ~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g 138 (185)
-|+.||....+.. ...|+.|.||.|.
T Consensus 242 pC~~CG~~I~~~~----~~gR~t~~CP~CQ 267 (268)
T 1k82_A 242 PCRVCGTPIVATK----HAQRATFYCRQCQ 267 (268)
T ss_dssp BCTTTCCBCEEEE----ETTEEEEECTTTC
T ss_pred CCCCCCCEeeEEE----ECCCceEECCCCC
Confidence 4888885433331 1245677788885
No 108
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.46 E-value=30 Score=23.31 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=15.6
Q ss_pred EeecCCCCceeEEeeCccccccCCccccCccCc
Q psy9094 107 VLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGV 139 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~ 139 (185)
.|.||.||...++...-+ -+.|..||.
T Consensus 35 ky~CpfCGk~~vkR~a~G------IW~C~kCg~ 61 (83)
T 3j21_i 35 KHTCPVCGRKAVKRISTG------IWQCQKCGA 61 (83)
T ss_dssp CBCCSSSCSSCEEEEETT------EEEETTTCC
T ss_pred ccCCCCCCCceeEecCcC------eEEcCCCCC
Confidence 367888886554432111 346887764
No 109
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=23.11 E-value=27 Score=21.62 Aligned_cols=27 Identities=7% Similarity=0.087 Sum_probs=15.3
Q ss_pred eecCCCCceeEEeeCccccccCCccccCccCc
Q psy9094 108 LKNHSTSEDRVLHLTPEQEKDKSHFTDKETGV 139 (185)
Q Consensus 108 ~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~ 139 (185)
.+||.|+...+.+-. .+....|..||-
T Consensus 12 ~~Cp~C~~~~lv~D~-----~~ge~vC~~CGl 38 (58)
T 1dl6_A 12 VTCPNHPDAILVEDY-----RAGDMICPECGL 38 (58)
T ss_dssp CSBTTBSSSCCEECS-----SSCCEECTTTCC
T ss_pred ccCcCCCCCceeEeC-----CCCeEEeCCCCC
Confidence 478988854443311 112346888884
No 110
>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron}
Probab=22.75 E-value=66 Score=27.07 Aligned_cols=21 Identities=5% Similarity=0.094 Sum_probs=19.1
Q ss_pred cccHHHHHHHHHHhcCCEEEE
Q psy9094 146 CQPLLEWLANNYKSFGATLEI 166 (185)
Q Consensus 146 ~~~~v~~l~e~a~~~g~~v~i 166 (185)
.+|+|+.+++.|.+.|-+|.+
T Consensus 98 ~~Dlv~~~l~aa~k~Gmkv~~ 118 (340)
T 4h41_A 98 SVDLVDMYLRLAEKYNMKFYF 118 (340)
T ss_dssp SBCHHHHHHHHHHHTTCEEEE
T ss_pred cccHHHHHHHHHHHhCCeEEE
Confidence 478999999999999999876
No 111
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=22.73 E-value=32 Score=25.26 Aligned_cols=27 Identities=11% Similarity=-0.011 Sum_probs=17.2
Q ss_pred ecCCCCceeEEeeCccccccCCccccCccCcchh
Q psy9094 109 KNHSTSEDRVLHLTPEQEKDKSHFTDKETGVELE 142 (185)
Q Consensus 109 ~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~ 142 (185)
.||.|+.+-+ |. +...+.||.|+..|.
T Consensus 29 ~CP~C~seyt-Ye------Dg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 29 PCPQCNSEYT-YE------DGALLVCPECAHEWS 55 (138)
T ss_dssp CCTTTCCCCC-EE------CSSSEEETTTTEEEC
T ss_pred CCCCCCCcce-Ee------cCCeEECCccccccC
Confidence 5899984221 21 223678999998774
No 112
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=22.65 E-value=35 Score=22.39 Aligned_cols=27 Identities=7% Similarity=-0.140 Sum_probs=15.6
Q ss_pred EeecCCCCceeEEeeCccccccCCccccCccCc
Q psy9094 107 VLKNHSTSEDRVLHLTPEQEKDKSHFTDKETGV 139 (185)
Q Consensus 107 ~~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~ 139 (185)
.|.||.||...++...- .-+.|..|+.
T Consensus 26 ky~C~fCgk~~vkR~a~------GIW~C~~C~~ 52 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRGAA------GIWTCSCCKK 52 (72)
T ss_dssp CBCCSSCCSSCBSBCSS------SCBCCSSSCC
T ss_pred CccCCCCCCceeEecCC------CeEECCCCCC
Confidence 36788888644432111 1356888874
No 113
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=22.15 E-value=19 Score=26.35 Aligned_cols=36 Identities=6% Similarity=-0.007 Sum_probs=0.0
Q ss_pred eEeecCCCCceeEEeeC---c-cccccCCccccCccCcch
Q psy9094 106 YVLKNHSTSEDRVLHLT---P-EQEKDKSHFTDKETGVEL 141 (185)
Q Consensus 106 ~~~~c~~~~~~~~~~~~---~-~~~~~~~~~~c~~~g~~~ 141 (185)
....|++|+.....|.+ + .++.....|.|..||..+
T Consensus 91 t~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w 130 (133)
T 3qt1_I 91 SDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRW 130 (133)
T ss_dssp ----------------------------------------
T ss_pred ccCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEe
Confidence 34689999966555521 1 233444577899999765
No 114
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=22.02 E-value=34 Score=23.51 Aligned_cols=26 Identities=12% Similarity=-0.078 Sum_probs=14.9
Q ss_pred eecCCCCceeEEeeCccccccCCccccCccCc
Q psy9094 108 LKNHSTSEDRVLHLTPEQEKDKSHFTDKETGV 139 (185)
Q Consensus 108 ~~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g~ 139 (185)
|.||.||...+....-+ -|.|..||.
T Consensus 37 y~CpfCgk~~vkR~a~G------IW~C~~Cg~ 62 (92)
T 3iz5_m 37 YFCEFCGKFAVKRKAVG------IWGCKDCGK 62 (92)
T ss_dssp BCCTTTCSSCBEEEETT------EEECSSSCC
T ss_pred ccCcccCCCeeEecCcc------eEEcCCCCC
Confidence 67888886544432111 346888863
No 115
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=21.97 E-value=32 Score=27.75 Aligned_cols=26 Identities=0% Similarity=-0.222 Sum_probs=16.5
Q ss_pred ecCCCCceeEEeeCccccccCCccccCccC
Q psy9094 109 KNHSTSEDRVLHLTPEQEKDKSHFTDKETG 138 (185)
Q Consensus 109 ~c~~~~~~~~~~~~~~~~~~~~~~~c~~~g 138 (185)
-|+.||....+.. ...|+.|.||.|.
T Consensus 236 pC~~CG~~I~~~~----~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSIIEKTT----LSSRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCBCEEEE----ETTEEEEECTTTC
T ss_pred CCCCCCCEeEEEE----ECCCCeEECCCCC
Confidence 5999996443331 2245677899886
No 116
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=21.80 E-value=50 Score=23.02 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=8.7
Q ss_pred ccCccCcchhh
Q psy9094 133 TDKETGVELEL 143 (185)
Q Consensus 133 ~c~~~g~~~~~ 143 (185)
.||+|+.+|+.
T Consensus 63 ~CPdC~q~Lev 73 (101)
T 2jne_A 63 LCPDCHQPLQV 73 (101)
T ss_dssp ECTTTCSBCEE
T ss_pred cCcchhhHHHH
Confidence 59999988753
No 117
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=21.43 E-value=20 Score=24.30 Aligned_cols=9 Identities=22% Similarity=0.084 Sum_probs=7.3
Q ss_pred ccCccCcch
Q psy9094 133 TDKETGVEL 141 (185)
Q Consensus 133 ~c~~~g~~~ 141 (185)
.||-||+++
T Consensus 10 ~~PlCG~~L 18 (95)
T 2k5c_A 10 KCPICGSPL 18 (95)
T ss_dssp ECSSSCCEE
T ss_pred cCCcCCCcc
Confidence 589999875
No 118
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=20.64 E-value=29 Score=26.03 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCEEEEeCC----CCchHHHH
Q psy9094 152 WLANNYKSFGATLEIITD----KSQEGSQF 177 (185)
Q Consensus 152 ~l~e~a~~~g~~v~ivs~----~~e~G~~l 177 (185)
.+++...+.|..++++.. .++.|..+
T Consensus 75 ~~~~~l~~~gv~l~~~~~~~d~~~~~~~~~ 104 (193)
T 3uj3_X 75 SLVGELRERGINFRSLTDSIDTSSPMGRFF 104 (193)
T ss_dssp HHHHHHHTTTCCCEETTTTEESSSHHHHHH
T ss_pred HHHHHHHHcCcEEEEcCCCccCCCHHHHHH
Confidence 355667889999998764 45566644
No 119
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=20.51 E-value=71 Score=23.58 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCEEEEeCCC----CchHHHHh
Q psy9094 152 WLANNYKSFGATLEIITDK----SQEGSQFV 178 (185)
Q Consensus 152 ~l~e~a~~~g~~v~ivs~~----~e~G~~l~ 178 (185)
.+++...+.|..++++... ++.|..++
T Consensus 78 ~~~~~l~~~gv~l~~~~~~~d~~~~~~~~~~ 108 (183)
T 1gdt_A 78 QLIKEFDAQGVSIRFIDDGISTDGEMGKMVV 108 (183)
T ss_dssp HHHHHHHHTTCEEEEGGGCCBCTTHHHHHHH
T ss_pred HHHHHHHHCCCEEEEecCCccCCChHHHHHH
Confidence 3556778899999988654 34565443
No 120
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=20.44 E-value=50 Score=20.06 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=12.6
Q ss_pred HHHHHHhcC--CEEEEeCCCCchHHHHhhhcC
Q psy9094 153 LANNYKSFG--ATLEIITDKSQEGSQFVRGFG 182 (185)
Q Consensus 153 l~e~a~~~g--~~v~ivs~~~e~G~~l~~~~G 182 (185)
+-+.+.+.+ ..+..|.-+.. ..+.+.+|
T Consensus 23 l~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~ 52 (85)
T 1nho_A 23 VDEAKKEFGDKIDVEKIDIMVD--REKAIEYG 52 (85)
T ss_dssp HHHHHHHHCSSCCEEEECTTTC--GGGGGGTC
T ss_pred HHHHHHHhcCCeEEEEEECCCC--HHHHHhCC
Confidence 334455554 44555544332 23445554
Done!