RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9094
(185 letters)
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic
peptide chain release factor subunit 1, ERF1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 161 bits (410), Expect = 4e-52
Identities = 98/129 (75%), Positives = 112/129 (86%)
Query: 57 KNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSED 116
+ K +G+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL T E+
Sbjct: 6 QEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEE 65
Query: 117 RVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQ 176
++L+LTPEQEKDKSHFTDKETG E EL+E PLLEW ANNYK FGATLEI+TDKSQEGSQ
Sbjct: 66 KILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQ 125
Query: 177 FVRGFGGIG 185
FV+GFGGIG
Sbjct: 126 FVKGFGGIG 134
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human
(Homo sapiens) [TaxId: 9606]}
Length = 111
Score = 78.3 bits (193), Expect = 7e-20
Identities = 14/129 (10%), Positives = 36/129 (27%), Gaps = 38/129 (29%)
Query: 57 KNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSED 116
+ ++ + + + +G++ +A E +++TL+ + L
Sbjct: 13 GEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDEL--------------- 57
Query: 117 RVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQ 176
+ V + L ++ K T+ I + G Q
Sbjct: 58 ----------------------FRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQ 95
Query: 177 FVRGFGGIG 185
G+
Sbjct: 96 L-SQLTGVA 103
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae
[TaxId: 4932]}
Length = 104
Score = 77.0 bits (190), Expect = 2e-19
Identities = 15/129 (11%), Positives = 41/129 (31%), Gaps = 38/129 (29%)
Query: 57 KNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSED 116
K M ++ +++D K +G ++ ++A E G++ L+ + +
Sbjct: 2 KEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYLLLTDKV--------------- 46
Query: 117 RVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQ 176
+ + + + L ++ +S G +++ G +
Sbjct: 47 ----------------------LHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEE 84
Query: 177 FVRGFGGIG 185
GI
Sbjct: 85 L-DQLTGIA 92
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide
chain release factor subunit 1, ERF1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 134
Score = 70.9 bits (174), Expect = 9e-17
Identities = 43/59 (72%), Positives = 48/59 (81%), Gaps = 4/59 (6%)
Query: 1 MEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPVRFSPLKNK 59
MEKRHNYVRKVAE A LFI+ DK N+AGL+LAGSADFKTELSQSDMFD L++K
Sbjct: 53 MEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQ----RLQSK 107
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 95
Score = 64.3 bits (157), Expect = 9e-15
Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 46/129 (35%)
Query: 57 KNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSED 116
++K + ++ + +D G Y G + T AL++G++ LI + +
Sbjct: 6 RDKEIVDEFLVAVKKDMGVY--GRDQTESALQMGALSDLIITDEM--------------- 48
Query: 117 RVLHLTPEQEKDKSHFTDKETGVELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQ 176
+ +D + ++ G + I++ + G
Sbjct: 49 -------FRTED---------------------GRRSLSIAQTVGTRIHIVSVSNDPGQI 80
Query: 177 FVRGFGGIG 185
+ FGG
Sbjct: 81 V-KKFGGFA 88
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix
[TaxId: 56636]}
Length = 124
Score = 27.1 bits (60), Expect = 0.78
Identities = 13/72 (18%), Positives = 34/72 (47%)
Query: 51 VRFSPLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKN 110
VRF ++ + + +++TG+ G +T +A+E G + ++ E++D V+
Sbjct: 4 VRFEVPEDLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHL 63
Query: 111 HSTSEDRVLHLT 122
+++ +
Sbjct: 64 PLLCDEKKIPYV 75
>d1wera_ a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 26.9 bits (59), Expect = 1.4
Identities = 15/107 (14%), Positives = 39/107 (36%), Gaps = 5/107 (4%)
Query: 31 ILAGSADFKTELSQSDMFDPVRFSPLKNKNKMGKYFDEISQDTGKY-CFGVEDTLRALEL 89
+ A+ ++ + V NK++M + DE+ T + +L
Sbjct: 219 SVQNLANLVEFGAKEPYMEGVNPFIKSNKHRMIMFLDELGNVPELPDTTEHSRTDLSRDL 278
Query: 90 GSVETLICWENLDIQRYVLKNHST---SEDRVLHLTPEQEKDKSHFT 133
++ + C + D R + ++L +T ++ ++ +T
Sbjct: 279 AALHEI-CVAHSDELRTLSNERGAQQHVLKKLLAITELLQQKQNQYT 324
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 119
Score = 25.6 bits (56), Expect = 2.1
Identities = 14/72 (19%), Positives = 32/72 (44%)
Query: 51 VRFSPLKNKNKMGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKN 110
V F + E+++DTG G +T +++E GS E + E++ + V+
Sbjct: 4 VDFDVPADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHI 63
Query: 111 HSTSEDRVLHLT 122
++++ +
Sbjct: 64 PELADEKGVPFI 75
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 26.5 bits (58), Expect = 2.2
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 76 YCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDK 129
Y E L+ SVET+ E ++ + + S+ + L +++K
Sbjct: 4 YSLRPEHARERLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREK 57
>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 24.7 bits (53), Expect = 3.6
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 42 LSQSDMFDPVRFSPLKNKNKMGKYFDEISQ----DTGKYCFGVEDTLRALEL 89
L++ R ++ G + I D+ Y VED ++L
Sbjct: 44 LTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.389
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 656,762
Number of extensions: 28012
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 15
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)