Query psy9095
Match_columns 203
No_of_seqs 119 out of 458
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 18:45:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03676 aRF1/eRF1 peptide ch 100.0 1.5E-51 3.2E-56 369.4 22.2 194 9-202 75-268 (403)
2 PRK04011 peptide chain release 100.0 2.1E-49 4.6E-54 356.6 20.7 198 3-202 72-276 (411)
3 TIGR00108 eRF peptide chain re 100.0 6.8E-49 1.5E-53 353.1 21.1 192 9-202 79-272 (409)
4 COG1503 eRF1 Peptide chain rel 100.0 6.8E-48 1.5E-52 340.9 12.4 198 5-202 78-275 (411)
5 KOG0688|consensus 100.0 4E-41 8.6E-46 287.7 8.6 195 9-203 83-277 (431)
6 TIGR00111 pelota probable tran 100.0 3.4E-33 7.4E-38 247.2 18.2 172 10-202 73-257 (351)
7 PF03464 eRF1_2: eRF1 domain 2 100.0 2.7E-31 5.7E-36 205.5 12.4 128 67-199 1-133 (133)
8 COG1537 PelA Predicted RNA-bin 99.9 4.4E-24 9.5E-29 185.9 16.7 169 12-202 74-252 (352)
9 KOG2869|consensus 99.9 1E-23 2.2E-28 181.2 9.3 162 15-192 80-259 (379)
10 PF03463 eRF1_1: eRF1 domain 1 98.7 1.6E-08 3.4E-13 78.1 4.0 51 10-63 76-131 (132)
11 PF10116 Host_attach: Protein 97.3 0.00057 1.2E-08 52.8 5.4 108 69-181 2-127 (138)
12 COG2433 Uncharacterized conser 90.7 1.1 2.3E-05 42.8 7.6 33 102-134 148-180 (652)
13 COG0431 Predicted flavoprotein 61.6 24 0.00051 28.3 5.6 42 143-187 68-117 (184)
14 PF03358 FMN_red: NADPH-depend 53.8 33 0.00071 25.9 5.0 65 122-198 59-133 (152)
15 PF10623 PilI: Plasmid conjuga 51.0 20 0.00043 25.3 2.9 33 2-40 32-64 (83)
16 TIGR01175 pilM type IV pilus a 43.7 1.6E+02 0.0036 25.4 8.4 94 68-168 190-306 (348)
17 TIGR03566 FMN_reduc_MsuE FMN r 38.5 1.6E+02 0.0035 23.0 6.9 40 143-185 69-116 (174)
18 PF03485 Arg_tRNA_synt_N: Argi 37.2 38 0.00082 23.4 2.7 30 123-154 52-81 (85)
19 COG3360 Uncharacterized conser 31.3 40 0.00087 23.1 1.9 22 181-202 18-39 (71)
20 COG4972 PilM Tfp pilus assembl 30.1 59 0.0013 29.2 3.3 44 116-159 257-304 (354)
21 PLN02854 3-ketoacyl-CoA syntha 30.1 1.1E+02 0.0024 29.1 5.3 86 111-200 180-267 (521)
22 COG4031 Predicted metal-bindin 29.9 2.6E+02 0.0057 23.1 6.8 37 117-160 55-91 (227)
23 TIGR02690 resist_ArsH arsenica 29.3 1.2E+02 0.0025 25.4 4.8 35 143-180 91-138 (219)
24 PRK14878 UGMP family protein; 28.4 2.8E+02 0.006 24.3 7.3 47 103-154 31-78 (323)
25 PRK00962 hypothetical protein; 28.0 3.2E+02 0.0069 21.9 7.4 98 26-133 54-160 (165)
26 PF01715 IPPT: IPP transferase 27.3 96 0.0021 26.3 4.1 36 122-161 40-75 (253)
27 PRK09557 fructokinase; Reviewe 27.2 1.2E+02 0.0026 25.8 4.8 63 120-187 225-293 (301)
28 PRK09604 UGMP family protein; 27.1 3.8E+02 0.0083 23.5 8.0 46 104-154 39-85 (332)
29 PRK05082 N-acetylmannosamine k 26.6 1.7E+02 0.0038 24.6 5.7 46 141-188 232-281 (291)
30 TIGR03567 FMN_reduc_SsuE FMN r 26.4 3.1E+02 0.0067 21.3 6.7 34 143-179 66-107 (171)
31 TIGR00300 conserved hypothetic 26.0 1.2E+02 0.0026 27.7 4.6 37 114-154 177-213 (407)
32 cd07285 PX_SNX9 The phosphoino 25.5 1.2E+02 0.0026 23.1 3.9 33 97-130 60-92 (126)
33 PRK10569 NAD(P)H-dependent FMN 25.4 2E+02 0.0044 23.1 5.6 34 143-179 67-108 (191)
34 cd00756 MoaE MoaE family. Memb 24.7 1.1E+02 0.0024 23.1 3.6 22 4-25 6-28 (124)
35 cd07286 PX_SNX18 The phosphoin 24.6 1.3E+02 0.0029 22.9 4.1 34 96-130 58-91 (127)
36 COG0533 QRI7 Metal-dependent p 24.4 2.1E+02 0.0044 25.8 5.7 37 117-153 44-83 (342)
37 COG0314 MoaE Molybdopterin con 23.8 96 0.0021 24.4 3.2 40 4-43 18-59 (149)
38 COG1105 FruK Fructose-1-phosph 23.5 1.1E+02 0.0024 27.1 3.8 112 51-191 60-176 (310)
39 COG2243 CobF Precorrin-2 methy 23.0 1.3E+02 0.0028 25.6 4.0 49 117-171 69-117 (234)
40 TIGR00329 gcp_kae1 metallohydr 22.8 3.5E+02 0.0076 23.3 6.9 60 90-154 21-82 (305)
41 TIGR00174 miaA tRNA isopenteny 22.7 1.5E+02 0.0032 25.8 4.4 36 121-160 71-106 (287)
42 KOG0458|consensus 22.5 66 0.0014 30.9 2.3 107 10-130 236-352 (603)
43 COG1521 Pantothenate kinase ty 21.3 84 0.0018 26.9 2.6 37 51-87 103-142 (251)
44 cd06891 PX_Vps17p The phosphoi 21.1 1.6E+02 0.0035 22.9 4.0 35 96-130 90-124 (140)
45 TIGR03722 arch_KAE1 universal 21.1 4.7E+02 0.01 22.7 7.4 47 103-154 32-79 (322)
46 PF11104 PilM_2: Type IV pilus 21.1 3.7E+02 0.0079 23.4 6.7 99 66-168 180-298 (340)
47 COG0420 SbcD DNA repair exonuc 20.6 1.3E+02 0.0028 26.8 3.8 30 117-153 22-51 (390)
48 COG5622 Protein required for a 20.2 59 0.0013 25.3 1.3 55 121-180 70-124 (139)
No 1
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=100.00 E-value=1.5e-51 Score=369.41 Aligned_cols=194 Identities=38% Similarity=0.647 Sum_probs=184.7
Q ss_pred CCCCCeEEEEEeeEecCCCeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCCCcEEEEEEECCceEEEEEeCCeE
Q psy9095 9 LVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTR 88 (203)
Q Consensus 9 ~~p~~Glv~f~G~~~~~~G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~~~~~vvvvd~g~a~i~~~~g~~~ 88 (203)
++|+||||+|||+++.++|+..+.|++++||.||++++|.||++|+++||.++++.+.++++|+||+++|.||+++|+.+
T Consensus 75 ~~p~nGlv~f~g~~~~~~~~~~~~t~~iep~~pi~~~~y~cd~~f~lepL~e~l~~~~~~g~VvvD~~~A~i~~l~g~~~ 154 (403)
T TIGR03676 75 KPPENGLVLFAGMVPTGGGTEKMETYVIEPPEPINTYLYRCDSKFYLEPLEEMLEEKDVYGLIVLDRREATIGLLKGKRI 154 (403)
T ss_pred CCCCCeEEEEEeeecCCCCceeEEEEEEeCCCceEEEEecCCChHHHHHHHHHhcCCCCEEEEEEecCceEEEEEcCCEE
Confidence 69999999999999998886666699999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCCCChhh
Q psy9095 89 EVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRL 168 (203)
Q Consensus 89 ~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L~~~l 168 (203)
+.++++++++|+||++||||++||+|+|++.+++||++||+.+.++|...+..++++|||||||++|++|.+++||++++
T Consensus 155 e~~~~i~~~vp~K~~~GGqS~~Rf~R~~e~~~~~f~~~Vae~~~~~f~~~~~~~v~~lILaGpg~~K~~f~~~~~L~~~l 234 (403)
T TIGR03676 155 EVLKELTSGVPGKHRAGGQSARRFERLIEIAAHEFYKRVGEAANEAFLPLKDKKLKGILIGGPGPTKEEFAEGDYLHHEL 234 (403)
T ss_pred EEEEEEEeeCCCCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccEEEEeCCHHHHHHHhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999998765445799999999999999999777999999
Q ss_pred hhceeEEEECCCCCcchHHHHHHHHHhhhccccc
Q psy9095 169 QAKIIKLVDVSYGGENGFNQAIELAAESLQNVLI 202 (203)
Q Consensus 169 ~~k~i~~~~~s~~~~~gl~E~l~~~~~~l~~~~~ 202 (203)
+++++.++|+||++++|++|++++++++|++.++
T Consensus 235 ~~kvi~~vd~s~~~~~Gl~Evl~~~~~~L~~~k~ 268 (403)
T TIGR03676 235 KKKILGLFDVSYTGESGLRELVEKAEDLLKDLEL 268 (403)
T ss_pred HhhEEEEEecCCCCccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998765
No 2
>PRK04011 peptide chain release factor 1; Provisional
Probab=100.00 E-value=2.1e-49 Score=356.56 Aligned_cols=198 Identities=36% Similarity=0.625 Sum_probs=186.0
Q ss_pred cccCcC----CCCCCeEEEEEeeEecCC---CeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCCCcEEEEEEEC
Q psy9095 3 SISGRY----LVPPNGLVIYCGTIVTEE---GKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDG 75 (203)
Q Consensus 3 ~~~~~~----~~p~~Glv~f~G~~~~~~---G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~~~~~vvvvd~ 75 (203)
++++++ ++|+||+|+|||.+++++ |.+| |++|+||.||++++|.||+.|+++||+++++.+.++++|+||+
T Consensus 72 ~~~~rl~~~~~~p~nGl~~f~g~~~~~~~~~~~~~--t~~i~p~~~i~~~~y~~d~~f~le~L~e~~~~~~~~~~VvvD~ 149 (411)
T PRK04011 72 SIIQRLKLYKKPPENGLVIFCGAVPIGGPGTEDME--TYVIEPPEPVPTFFYRCDSEFHTEPLEDMLEDKEVYGLIVVDR 149 (411)
T ss_pred HHHHhhccCCCCCCCeEEEEEeecccCCCCCceEE--EEEEcCCCccEEEEecCCcHHHHHHHHHHhcCCCCEEEEEEec
Confidence 444555 499999999999999877 6666 9999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeCCeEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhH
Q psy9095 76 NGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFK 155 (203)
Q Consensus 76 g~a~i~~~~g~~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k 155 (203)
++|.||+++++.+++++++++++|+||++||||++||+|++|+.+++||++|++.+.++|.++++.++++|||||||++|
T Consensus 150 ~~A~i~~l~g~~~~~~~~i~~~vp~K~~~GG~S~~Rf~r~~e~~~~~f~k~Vae~~~~~f~~~~~~~v~~IvlaGpg~~K 229 (411)
T PRK04011 150 REATIGLLKGKRIEVLKELTSFVPGKHRKGGQSARRFERLIEQAAHEFYKRVGEKANEAFLPLLEGKLKGILIGGPGPTK 229 (411)
T ss_pred CceEEEEEeCCEEEEEEEEEeeCCCCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999976556789999999999999
Q ss_pred HhhhccCCCChhhhhceeEEEECCCCCcchHHHHHHHHHhhhccccc
Q psy9095 156 TELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVLI 202 (203)
Q Consensus 156 ~~f~~~~~L~~~l~~k~i~~~~~s~~~~~gl~E~l~~~~~~l~~~~~ 202 (203)
++|.+++||+++++++++.++|+|+++++|++|++++++++|++.++
T Consensus 230 ~~f~~~~~L~~~l~~~vv~~~~~s~~~~~Gl~E~l~~~~~~L~~~k~ 276 (411)
T PRK04011 230 EEFLEGDYLHYELKKKILGLFDVSYTGESGLRELVDKASDLLKEQEL 276 (411)
T ss_pred HHHhhhhhhhHHHHhheEEEEecCCCCccCHHHHHHHHHHHHHHhHH
Confidence 99997779999999999999999999999999999999999998764
No 3
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=100.00 E-value=6.8e-49 Score=353.07 Aligned_cols=192 Identities=41% Similarity=0.690 Sum_probs=182.7
Q ss_pred CCCCCeEEEEEeeEecCC--CeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCCCcEEEEEEECCceEEEEEeCC
Q psy9095 9 LVPPNGLVIYCGTIVTEE--GKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGN 86 (203)
Q Consensus 9 ~~p~~Glv~f~G~~~~~~--G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~~~~~vvvvd~g~a~i~~~~g~ 86 (203)
++|+||+|+|||+++.++ |++| |++|+||.||++++|.||++|+++||+++++++.++++|+||+++|.||+++|+
T Consensus 79 ~~p~nglv~~~G~v~~~~~~~~~~--t~~iep~~pi~~~~y~~d~~f~le~L~e~~~~~~~~g~VvvD~~~A~i~~l~g~ 156 (409)
T TIGR00108 79 KPPENGLVIFCGMVPREGPTEKME--TYVIEPPEPIKTYIYHCDSKFYLEPLSEMLEEKDKYGLIVLDRQEATIGLVKGK 156 (409)
T ss_pred CCCCCcEEEEEeEeccCCCcccEE--EEEEeCCCceEEEEEccCChhHHHHHHHHhcCCCCEEEEEEecCCEEEEEEcCC
Confidence 699999999999998876 4677 999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCCCCh
Q psy9095 87 TREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDP 166 (203)
Q Consensus 87 ~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L~~ 166 (203)
.+++++.+++++|+||++||||++||+|+|++.+++||++||+.+.++|++.+..++++|||||||++|++|.+++||++
T Consensus 157 ~~~~~~~i~~~vp~K~~~GGqS~~Rf~r~~e~~~~~f~~~Vae~~~~~f~~~~~~~v~~IIlaGpg~~K~~f~~~~~l~~ 236 (409)
T TIGR00108 157 RITVLKKLTSGVPGKHKAGGQSARRFERLRELAAHEFLKKVGEVANEAFLPNDDVKLKGIILGGPGHTKEEFAEGEYLHH 236 (409)
T ss_pred EEEEEEEEeeeCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccceEEEEeccHHHHHHhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999997655558999999999999999998789999
Q ss_pred hhhhceeEEEECCCCCcchHHHHHHHHHhhhccccc
Q psy9095 167 RLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVLI 202 (203)
Q Consensus 167 ~l~~k~i~~~~~s~~~~~gl~E~l~~~~~~l~~~~~ 202 (203)
+++++++.++|+||++++|++|++++++++|++.++
T Consensus 237 ~l~~kvi~~vdvs~gg~~gl~E~l~~~~~~L~~~k~ 272 (409)
T TIGR00108 237 ELKKKVISTVDVSYTGEFGIRELIEKSADVLAEVDY 272 (409)
T ss_pred HhhhhEEEEEEcCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999889999999999999999999999998764
No 4
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-48 Score=340.93 Aligned_cols=198 Identities=42% Similarity=0.683 Sum_probs=189.0
Q ss_pred cCcCCCCCCeEEEEEeeEecCCCeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCCCcEEEEEEECCceEEEEEe
Q psy9095 5 SGRYLVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQ 84 (203)
Q Consensus 5 ~~~~~~p~~Glv~f~G~~~~~~G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~~~~~vvvvd~g~a~i~~~~ 84 (203)
..+.++|+||+|+|||.+....|...+++..++||.|++.++|+||+.|+++||++++.+...||++++|+++++||++.
T Consensus 78 k~~~~~P~nGlv~f~g~v~~~~~~t~~~~~~~~PP~Pi~~~ly~cDs~F~~e~L~~~l~~~~~ygliv~dr~ea~ig~l~ 157 (411)
T COG1503 78 KDYCKTPENGLVLFVGDVLGGGGKTKKVTVVIEPPEPINTFLYRCDSKFYLEPLEEMLEDKDLYGLIVLDRIEATIGLLK 157 (411)
T ss_pred HhcccCCCCCeEEEEeeeccCCCccceeeecccCCCCcceeeeccccHHHHHHHHHHhhhcccccEEEEecccceeeeec
Confidence 33447999999999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCCC
Q psy9095 85 GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMF 164 (203)
Q Consensus 85 g~~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L 164 (203)
|..+++++.+++.||+||.+||||++||+|++++..+.||++|++.+.++|++....++++|+||||+.+|++|.+.+||
T Consensus 158 g~r~evl~~~~s~vpgKh~~Ggqsa~rferl~ee~~h~f~k~vge~A~e~f~~~~~~~~kgIilgGp~~tk~ef~e~~yL 237 (411)
T COG1503 158 GKRIEVLKELTSDVPGKHRAGGQSARRFERLIEEAAHEFYKKVGEAASEAFLPIAKKELKGIILGGPGPTKEEFVEGDYL 237 (411)
T ss_pred cceeeHhhhhcccCcchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcceEeeCCcccchhhhccccc
Confidence 99999999999999999999999999999999999999999999999999987544479999999999999999999999
Q ss_pred ChhhhhceeEEEECCCCCcchHHHHHHHHHhhhccccc
Q psy9095 165 DPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVLI 202 (203)
Q Consensus 165 ~~~l~~k~i~~~~~s~~~~~gl~E~l~~~~~~l~~~~~ 202 (203)
++++++++++++|++|++++|++|++.+|+|.|+++++
T Consensus 238 ~~~lk~kv~~lvDv~y~~esg~~eli~~A~d~L~~~~~ 275 (411)
T COG1503 238 HHELKKKVLGLVDVSYTGESGLRELIEKAEDALKDVDY 275 (411)
T ss_pred chHHHHHHHhhccccccccccHHHHHHHhHHHHHhhhh
Confidence 99999999999999999999999999999999998865
No 5
>KOG0688|consensus
Probab=100.00 E-value=4e-41 Score=287.69 Aligned_cols=195 Identities=88% Similarity=1.320 Sum_probs=190.7
Q ss_pred CCCCCeEEEEEeeEecCCCeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCCCcEEEEEEECCceEEEEEeCCeE
Q psy9095 9 LVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTR 88 (203)
Q Consensus 9 ~~p~~Glv~f~G~~~~~~G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~~~~~vvvvd~g~a~i~~~~g~~~ 88 (203)
++|+||+|+|||++.+++|+.+.+++++||..||..+.|.||++||+++|.+++.+..++|++++|...+.+|++.|+..
T Consensus 83 kvPpnglvly~gti~tedgkekkv~idfepfkpintslyLcdNkfhte~l~~Ll~sd~kfgfivmDg~~tlfgtl~gntr 162 (431)
T KOG0688|consen 83 KVPPNGLVLYTGTIVTEDGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALKELLESDNKFGFIVMDGNGTLFGTLQGNTR 162 (431)
T ss_pred cCCCCceEEEeeeeEccCCceeeeecccccccccccceEecCCccchHHHHHHHhhcccccEEEEcCCceeEEEeccchH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCCCChhh
Q psy9095 89 EVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRL 168 (203)
Q Consensus 89 ~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L~~~l 168 (203)
++++.++.++|+||..||||+.||.|+|.+..+.|.+++||.+.+.|+.++..++.++|+||...+|.++.++|.++++|
T Consensus 163 evLhkftVdlPkkhgrggqSalrfarlR~ekRhnYVrkvae~a~q~fi~~~~~Nv~gLilaGsadfKtelsqSd~fd~rl 242 (431)
T KOG0688|consen 163 EVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAELAVQRFITNDKPNVAGLILAGSADFKTELSQSDMFDPRL 242 (431)
T ss_pred hhhheeeecCccccCccchhHHhhhhhhhhhhccceeeecccceeEEecCCCcceeEEEEecccccccccchhhhcchHH
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred hhceeEEEECCCCCcchHHHHHHHHHhhhcccccC
Q psy9095 169 QAKIIKLVDVSYGGENGFNQAIELAAESLQNVLIV 203 (203)
Q Consensus 169 ~~k~i~~~~~s~~~~~gl~E~l~~~~~~l~~~~~~ 203 (203)
+.|++.++|+||||++|++++|+.+.+.|+.+.++
T Consensus 243 qskvi~~vdvsyGGengfnQaIeL~aevlsnvk~v 277 (431)
T KOG0688|consen 243 QSKVLKTVDVSYGGENGFNQAIELSAEVLSNVKFV 277 (431)
T ss_pred hhhHHhhhcccccchhhHHHHHHHHHhhhhcceee
Confidence 99999999999999999999999999999998764
No 6
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=100.00 E-value=3.4e-33 Score=247.20 Aligned_cols=172 Identities=22% Similarity=0.291 Sum_probs=152.3
Q ss_pred CCCCeEEEEEeeEecCC------CeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCC--CcEEEEEEECCceEEE
Q psy9095 10 VPPNGLVIYCGTIVTEE------GKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADD--NKFGFIVMDGNGALFG 81 (203)
Q Consensus 10 ~p~~Glv~f~G~~~~~~------G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~--~~~~vvvvd~g~a~i~ 81 (203)
.|.+|..-++|.+..++ |+|| |++|+||.|++++|+ ||++|++++|++|++++ +.+++|+||.|+|+||
T Consensus 73 ~~~~~~Lri~G~i~~~~e~~v~~G~~H--Tl~ie~~~~i~i~K~-~w~~~~le~L~ea~~~~~~~~~~~vv~d~g~A~i~ 149 (351)
T TIGR00111 73 DMKTERLRYKGVIVTGPEDDVPVGSYH--TLEIKYVYPLSIIKQ-NWKKWQLKRLREAVEISKRPKTAAVVMEEGIAHVG 149 (351)
T ss_pred cCCCCEEEEEEEEecCCcccccccceE--EEEEcCCCcEEEEEe-cCCHHHHHHHHHHhccccCCcEEEEEEeCCcEEEE
Confidence 68899999999999763 8999 999999999999997 69999999999999987 8899999999999999
Q ss_pred EEeCCeEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhcc
Q psy9095 82 TLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQS 161 (203)
Q Consensus 82 ~~~g~~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~ 161 (203)
+++++++++++++++++|+||+ + + .+++.+++||++|++++.+ | .++++||||||||+|++|.
T Consensus 150 ll~~~~~~~~~~i~~~iP~K~~-~--~------~~e~~~~~Ff~~v~~~l~~-~-----~~v~~iIiaGPGf~k~~f~-- 212 (351)
T TIGR00111 150 LVRQYSVEEIQKIEYHMPGKKR-T--L------KFGELRKEFYKEIAKKLLN-F-----DDLKTIIVAGPGFYKNDFY-- 212 (351)
T ss_pred EEcCCEEEEEEEEEEeCCCCcc-c--c------hhHHHHHHHHHHHHHHHhh-h-----cccCEEEEECCHHHHHHHH--
Confidence 9999999999999999999984 2 2 2677888999999999854 2 4699999999999999998
Q ss_pred CCCChhhhh---ceeEEEECCCCCcchHHHHHHHH--Hhhhccccc
Q psy9095 162 DMFDPRLQA---KIIKLVDVSYGGENGFNQAIELA--AESLQNVLI 202 (203)
Q Consensus 162 ~~L~~~l~~---k~i~~~~~s~~~~~gl~E~l~~~--~~~l~~~~~ 202 (203)
+||..++.+ +. .+.|+|+++++||+|+|+++ ++.|++.++
T Consensus 213 ~~l~~~~~~~~~k~-ii~~~s~g~~~gl~EvL~~~~v~~~l~d~k~ 257 (351)
T TIGR00111 213 DFIFERYPEEANKA-VLENCSTGGRAGINEVLKRGLVARILQETRY 257 (351)
T ss_pred HHHHHHhhhhhCCc-EEEecCCCchhHHHHHHhChHHHHHHhhhhH
Confidence 577766543 32 35799999999999999988 999998875
No 7
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=99.97 E-value=2.7e-31 Score=205.49 Aligned_cols=128 Identities=30% Similarity=0.533 Sum_probs=114.5
Q ss_pred cEEEEEEECCceEEEEEeCCeEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEE
Q psy9095 67 KFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGL 146 (203)
Q Consensus 67 ~~~vvvvd~g~a~i~~~~g~~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~i 146 (203)
++++|+||.|+|.||+++++++++++++++++|+||.+||+|+.||+ |++++++||++|++.+.++|+ .++.++++|
T Consensus 1 ~v~~v~id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~Gg~s~~rf~--r~~~~~~f~~~i~~~l~~~f~-~~~~~~~~i 77 (133)
T PF03464_consen 1 KVGIVVIDEGEANICLLRGYGTEILQRIESNIPGKHKKGGQSQRRFE--REKALEKFFKEIAEALKKYFL-VNFDDVKCI 77 (133)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEEEE-GHCCCSSTTCSHHHHHH--HHHHHHHHHHHHHHHHHHHCC-CHTTTCSEE
T ss_pred CEEEEEEeCCCEEEEEEcCCEEEEEEEEEecCCCccCCCCcchhhHH--HHHHHHHHHHHHHHHHHHHhh-hccccccEE
Confidence 48999999999999999999999999999999999999999999999 899999999999999999975 246789999
Q ss_pred EEecChhhHHhhhccCCCCh--hhhh-ceeEEEECCCCCcchHHHHHHH--HHhhhcc
Q psy9095 147 ILAGSADFKTELSQSDMFDP--RLQA-KIIKLVDVSYGGENGFNQAIEL--AAESLQN 199 (203)
Q Consensus 147 IiaGpg~~k~~f~~~~~L~~--~l~~-k~i~~~~~s~~~~~gl~E~l~~--~~~~l~~ 199 (203)
|||||||+|++|.+ |+.. ..++ +.+.++|+|+++++||+|+|++ .+++|+|
T Consensus 78 IiaGPGf~k~~f~~--~l~~~~~~~~~~~i~~~~~s~~~~~gl~Evl~~~~v~~~l~d 133 (133)
T PF03464_consen 78 IIAGPGFTKEEFYK--YLKAEARRKDKKKIVVVDTSSGGESGLNEVLKRPEVQKILKD 133 (133)
T ss_dssp EEEESTTHHHHHHH--HHHHHHHHHTCCEEEEEE-SSSCHHHHHHHHHSHHHHHHHCT
T ss_pred EEECCHHHHHHHHH--HHHHhhHhhcCCEEEEEECCCCCHHHHHHHHHhhhHHHHhcC
Confidence 99999999999995 5554 4444 6678999999999999999999 8888875
No 8
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=99.92 E-value=4.4e-24 Score=185.92 Aligned_cols=169 Identities=22% Similarity=0.268 Sum_probs=142.0
Q ss_pred CCeEEEEEeeEecC--C---CeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcC--CCcEEEEEEECCceEEEEEe
Q psy9095 12 PNGLVIYCGTIVTE--E---GKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLAD--DNKFGFIVMDGNGALFGTLQ 84 (203)
Q Consensus 12 ~~Glv~f~G~~~~~--~---G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~--~~~~~vvvvd~g~a~i~~~~ 84 (203)
-++..-+.|.+... + |+|| |+++.+..++++.|.+ |+.+.+++|++++++ .+++++|++|.|+|.||+++
T Consensus 74 f~nrLRi~G~i~~~~e~~~~G~yH--Ti~v~~g~~i~I~K~~-W~~~~lerLkeA~~~~~~~~~~~v~~degea~i~iv~ 150 (352)
T COG1537 74 FANRLRIKGPIVEGPEEVVKGSYH--TINVTIGTEIEIEKEE-WNKDQLERLKEAVEASKRPEVAIVVVDEGEAAIAIVR 150 (352)
T ss_pred cccEEEEEEEEEEcCcccccccce--EEEeccCceEEEEEcc-CCHHHHHHHHHHhhcccCCceEEEEEecCceEEEEEe
Confidence 35556677877743 3 9999 9999999999999965 899999999999999 59999999999999999999
Q ss_pred CCeEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCCC
Q psy9095 85 GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMF 164 (203)
Q Consensus 85 g~~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L 164 (203)
+++++.+.+++++.|+|... .. +.+ .+||..+++.+.+.+ +++.+|||||||+|++|+ +|+
T Consensus 151 ~ygi~~~~~i~~~~~gK~~~---~~------~~~--~k~~~~i~~~~~~~~------~~~~iIvaGPGF~k~~~~--~~~ 211 (352)
T COG1537 151 DYGIIILGKIRSGIPGKREG---DI------RAE--RKFFDEIAKALKEYA------NLDIIIVAGPGFAKEDFY--DFL 211 (352)
T ss_pred ccceEEEEEEeccCCCCccc---ch------hhH--HHHHHHHHHHHHHhh------CCCeEEEeCCchHHHHHH--HHH
Confidence 99999999999999988432 11 122 689999999998864 579999999999999999 688
Q ss_pred Chhhhhce-eEEEECCCCCcchHHHHHHHHH--hhhccccc
Q psy9095 165 DPRLQAKI-IKLVDVSYGGENGFNQAIELAA--ESLQNVLI 202 (203)
Q Consensus 165 ~~~l~~k~-i~~~~~s~~~~~gl~E~l~~~~--~~l~~~~~ 202 (203)
..+..+.. +.+.|+|++|.+|++|+|+++. ..+++.++
T Consensus 212 ~~~~p~~~~~~~~~~s~~g~~gi~EvLkr~~v~ki~~e~ri 252 (352)
T COG1537 212 RERYPELANIVIEDTSTGGRAGINEVLKRGAVDKILSETRI 252 (352)
T ss_pred HHhcccccceEEEeccCcchHHHHHHHhhhhHHhHhhhhHH
Confidence 87665433 6789999999999999999873 45555543
No 9
>KOG2869|consensus
Probab=99.90 E-value=1e-23 Score=181.18 Aligned_cols=162 Identities=17% Similarity=0.214 Sum_probs=142.7
Q ss_pred EEEEEeeEecCC-----CeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCC--CcEEEEEEECCceEEEEEeCCe
Q psy9095 15 LVIYCGTIVTEE-----GKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADD--NKFGFIVMDGNGALFGTLQGNT 87 (203)
Q Consensus 15 lv~f~G~~~~~~-----G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~--~~~~vvvvd~g~a~i~~~~g~~ 87 (203)
..-+.|.++.+| |+|| |++++|.+|+++.|. .|+++.+++|++++++. ..+++|++++|-|.||+++.+.
T Consensus 80 ~L~~KGrti~eNe~Vk~GaYH--Tidlel~r~FtL~K~-ewds~al~~l~~A~dp~~~ad~aaVvlqEGla~IcLvt~s~ 156 (379)
T KOG2869|consen 80 VLRLKGRTIEENEYVKMGAYH--TIDLELNRPFTLRKE-EWDSMALKLLKEACDPAPSADVAAVVLQEGLAHICLVTKSS 156 (379)
T ss_pred EEEEeeeeeeeccccccccee--EEEeccCCceEEEhh-hchHHHHHHHHHhhCcccccceeeeehhcCceeEEEechhH
Confidence 445688888776 9999 999999999999995 68999999999999984 8999999999999999999999
Q ss_pred EEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCCCChh
Q psy9095 88 REVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPR 167 (203)
Q Consensus 88 ~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L~~~ 167 (203)
+...++++.++|+| ++|+.|+ .|+..++||+.|..++.+++ +++.++++|||+|||+++.|. +|+-..
T Consensus 157 tilr~kIe~siPrK-r~~~~s~------~e~~l~kfye~V~qA~~k~v---~fd~vk~~vvASpgF~~~~~~--d~~~q~ 224 (379)
T KOG2869|consen 157 TILRAKIEVSIPRK-RKGDVSQ------HEEGLEKFYENVVQAILKHV---NFDVVKCVVVASPGFVKDQFM--DYLFQQ 224 (379)
T ss_pred HHHHHhhhcccccc-cCcchhH------HHHHHHHHHHHHHHHHHHhc---CcceEEEEEEcCCchhHHHHH--HHHHHH
Confidence 99999999999999 5666888 89999999999999999986 588999999999999999998 445332
Q ss_pred h-----------hhceeEEEECCCCCcchHHHHHHH
Q psy9095 168 L-----------QAKIIKLVDVSYGGENGFNQAIEL 192 (203)
Q Consensus 168 l-----------~~k~i~~~~~s~~~~~gl~E~l~~ 192 (203)
. +.|+ ..+++|+|..++|+|+|.-
T Consensus 225 A~~~~~k~il~nk~kf-~~~h~ssg~~hslnevL~d 259 (379)
T KOG2869|consen 225 AVKLDLKLILENKSKF-PLVHASSGYKHSLNEVLKD 259 (379)
T ss_pred HHHhchhhhhhcccce-eEEecCCchHHHHHHHhcC
Confidence 1 2243 5899999999999999963
No 10
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification.; PDB: 2VGN_A 2VGM_A 3J16_A 3IZQ 3AGK_A 3AGJ_B 3OBW_A 3E1Y_D 1DT9_A 2LLX_A ....
Probab=98.69 E-value=1.6e-08 Score=78.14 Aligned_cols=51 Identities=31% Similarity=0.522 Sum_probs=45.1
Q ss_pred CCCCeEEEEEeeEecCC-----CeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHc
Q psy9095 10 VPPNGLVIYCGTIVTEE-----GKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLA 63 (203)
Q Consensus 10 ~p~~Glv~f~G~~~~~~-----G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~ 63 (203)
.|++|++.|+|.+..++ |+|| |++|+|+.||+++|+. |++++++.|.++++
T Consensus 76 ~~~~~~Lri~G~i~~~~~~~~~G~~h--T~~i~~~~~~ti~K~~-wd~~~~~~l~ea~~ 131 (132)
T PF03463_consen 76 DPENGLLRISGKIVEENEDVKLGKYH--TLDIEPGRPFTIIKYR-WDSYFLDRLKEAMD 131 (132)
T ss_dssp ETTTTEEEEEEEEEEGSCGGGTTSEE--EEEEETSSEEEEEEEE-EEHHHHHHHHHHTS
T ss_pred cCCCCEEEEEeEEccCCCCCCcceEE--EEEEeCCCceEEEEec-CCHHHHHHHHHHhc
Confidence 79999999999999773 9999 9999999999999975 57777788888765
No 11
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=97.27 E-value=0.00057 Score=52.81 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=73.8
Q ss_pred EEEEEECCceEEEEEeCCeE---EEE------------EEEEeeCCCcCCC-CCc--chHHHHHHHHHHHHHHHHHHHHH
Q psy9095 69 GFIVMDGNGALFGTLQGNTR---EVL------------HKFTVDLPKKHGR-GGQ--SALRFARLRMEKRHNYVRKVAEV 130 (203)
Q Consensus 69 ~vvvvd~g~a~i~~~~g~~~---~~~------------~~i~~~vp~Kh~~-GG~--S~~RfeR~re~~i~~~~~~vae~ 130 (203)
.|||+|.+.|-|....+... ..+ ..+.++-||.... +|. |........++..++|.++|++.
T Consensus 2 wVvVaD~~~Ar~f~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~d~~Gr~~~~~g~~~~~~~~~~~~~~~~~~Fa~~vA~~ 81 (138)
T PF10116_consen 2 WVVVADGSRARIFENEGDESEPLLELEELDHPESRLKDRDLVSDRPGRFHDSAGQRGSMEERTDPKEEEEERFAREVADR 81 (138)
T ss_pred EEEEEecceeEEEEecCCCCCcchhhhhhcccccccchhhhccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 48999999998888877643 211 2344566665222 221 21122233677788999999999
Q ss_pred HHhhhhhCCCCCccEEEEecChhhHHhhhccCCCChhhhhceeEEEECCCC
Q psy9095 131 ATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYG 181 (203)
Q Consensus 131 ~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L~~~l~~k~i~~~~~s~~ 181 (203)
+.+... ...++.|||++|..+-..+.+ .|+..+++++++.++=.++
T Consensus 82 L~~~~~---~~~~~~LvlvA~p~~LG~LR~--~L~~~~~~~V~~ei~kDlt 127 (138)
T PF10116_consen 82 LEKARR---AGKFDRLVLVAPPRFLGLLRE--HLSKAVRKRVVGEIDKDLT 127 (138)
T ss_pred HHHHHH---hCCCCeEEEEECHHHHHHHHH--HhCHHHHHHHHHHHhhhhh
Confidence 999765 456888999999998888884 5999988877655544443
No 12
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.74 E-value=1.1 Score=42.79 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=28.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9095 102 HGRGGQSALRFARLRMEKRHNYVRKVAEVATTL 134 (203)
Q Consensus 102 h~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~ 134 (203)
.++|||||.||.|..-..+.+-.++|-+.+.+.
T Consensus 148 ~g~GGwSq~RY~R~vh~av~~~~reIee~L~~a 180 (652)
T COG2433 148 LGPGGWSQNRYRRRVHGAVKRVVREIEEKLDEA 180 (652)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367999999999998888888888888887754
No 13
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=61.57 E-value=24 Score=28.31 Aligned_cols=42 Identities=31% Similarity=0.506 Sum_probs=34.8
Q ss_pred ccEEEEecCh-------hhHHhhhccCCCChh-hhhceeEEEECCCCCcchHH
Q psy9095 143 IAGLILAGSA-------DFKTELSQSDMFDPR-LQAKIIKLVDVSYGGENGFN 187 (203)
Q Consensus 143 ~~~iIiaGpg-------~~k~~f~~~~~L~~~-l~~k~i~~~~~s~~~~~gl~ 187 (203)
-+++|++.|- .+|+.+ |+|..+ +..|.+..+-+|++..+|++
T Consensus 68 aD~li~~tPeYn~s~pg~lKnai---D~l~~~~~~~Kpv~~~~~s~g~~~~~~ 117 (184)
T COG0431 68 ADGLIIATPEYNGSYPGALKNAI---DWLSREALGGKPVLLLGTSGGGAGGLR 117 (184)
T ss_pred CCEEEEECCccCCCCCHHHHHHH---HhCCHhHhCCCcEEEEecCCCchhHHH
Confidence 4889999875 467777 789886 77899889999999999884
No 14
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=53.82 E-value=33 Score=25.93 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhhhhCCCCCccEEEEecChh------hHHhhhccCCC----ChhhhhceeEEEECCCCCcchHHHHHH
Q psy9095 122 NYVRKVAEVATTLFITNDKPNIAGLILAGSAD------FKTELSQSDMF----DPRLQAKIIKLVDVSYGGENGFNQAIE 191 (203)
Q Consensus 122 ~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~------~k~~f~~~~~L----~~~l~~k~i~~~~~s~~~~~gl~E~l~ 191 (203)
+-++++.+.+.+ -++||++.|-. .-..|. |++ ...++.|.+..+.++.+. .|-..++.
T Consensus 59 d~~~~~~~~l~~---------aD~iI~~sP~y~~~~s~~lK~~l--D~~~~~~~~~~~~K~~~~i~~~g~~-~g~~~~~~ 126 (152)
T PF03358_consen 59 DDVQELYDKLKE---------ADGIIFASPVYNGSVSGQLKNFL--DRLSCWFRRALRGKPVAIIAVGGGR-RGGLRALE 126 (152)
T ss_dssp HHHHHHHHHHHH---------SSEEEEEEEEBTTBE-HHHHHHH--HTHHHTHTTTTTTSEEEEEEEESSS-STTHHHHH
T ss_pred HHHHHHHhceec---------CCeEEEeecEEcCcCChhhhHHH--HHhccccccccCCCEEEEEEEecCC-cHHHHHHH
Confidence 344555555544 38899999864 244454 566 457778988888766543 33333444
Q ss_pred HHHhhhc
Q psy9095 192 LAAESLQ 198 (203)
Q Consensus 192 ~~~~~l~ 198 (203)
.-...+.
T Consensus 127 ~l~~~~~ 133 (152)
T PF03358_consen 127 QLRQILD 133 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 15
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=50.97 E-value=20 Score=25.26 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=22.8
Q ss_pred ccccCcCCCCCCeEEEEEeeEecCCCeeeEEEEeeeCCC
Q psy9095 2 NSISGRYLVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFK 40 (203)
Q Consensus 2 ~~~~~~~~~p~~Glv~f~G~~~~~~G~~h~~t~~iepp~ 40 (203)
+.|.+++.+|+|+||+..-. +. ..+.++=.|..
T Consensus 32 ~~i~r~f~TpdN~lV~V~~~-----nr-~l~r~eR~pgS 64 (83)
T PF10623_consen 32 DKIARRFCTPDNCLVCVLQD-----NR-FLFRWERAPGS 64 (83)
T ss_pred HHHHhhccCcCCeEEEEEeC-----Cc-eEEEEeeCCCc
Confidence 45677888999999998764 33 24456656654
No 16
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=43.71 E-value=1.6e+02 Score=25.43 Aligned_cols=94 Identities=16% Similarity=0.239 Sum_probs=49.6
Q ss_pred EEEEEEECCceEEEEEeCCeEEEEEEEEee-------------CCC------cCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy9095 68 FGFIVMDGNGALFGTLQGNTREVLHKFTVD-------------LPK------KHGRGGQSALRFARLRMEKRHNYVRKVA 128 (203)
Q Consensus 68 ~~vvvvd~g~a~i~~~~g~~~~~~~~i~~~-------------vp~------Kh~~GG~S~~RfeR~re~~i~~~~~~va 128 (203)
+++|=+..+...+.++.+........+... ++- |. .+|.+... ..+.++.++++++
T Consensus 190 ~~lvdiG~~~t~l~i~~~g~~~~~r~i~~G~~~i~~~i~~~~~~~~~~Ae~~k~-~~~~~~~~----~~~~~~~~~~~l~ 264 (348)
T TIGR01175 190 AALVDIGATSSTLNLLHPGRMLFTREVPFGTRQLTSELSRAYGLNPEEAGEAKQ-QGGLPLLY----DPEVLRRFKGELV 264 (348)
T ss_pred EEEEEECCCcEEEEEEECCeEEEEEEeechHHHHHHHHHHHcCCCHHHHHHHHh-cCCCCCch----hHHHHHHHHHHHH
Confidence 445445566669999988887776666531 110 00 11111110 1233445555555
Q ss_pred HHHHhhh---h-hCCCCCccEEEEecChhhHHhhhccCCCChhh
Q psy9095 129 EVATTLF---I-TNDKPNIAGLILAGSADFKTELSQSDMFDPRL 168 (203)
Q Consensus 129 e~~~~~f---~-~~~~~~~~~iIiaGpg~~k~~f~~~~~L~~~l 168 (203)
..+.+.+ . ......+++|+|+|.|.....|. ++|...+
T Consensus 265 ~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~--~~l~~~l 306 (348)
T TIGR01175 265 DEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLD--AAIYQRL 306 (348)
T ss_pred HHHHHHHHhhcCCCCCcccceEEEECccccchhHH--HHHHHHH
Confidence 5554432 1 12234689999999887666665 3444433
No 17
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=38.51 E-value=1.6e+02 Score=22.96 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=26.5
Q ss_pred ccEEEEecCh-------hhHHhhhccCCCC-hhhhhceeEEEECCCCCcch
Q psy9095 143 IAGLILAGSA-------DFKTELSQSDMFD-PRLQAKIIKLVDVSYGGENG 185 (203)
Q Consensus 143 ~~~iIiaGpg-------~~k~~f~~~~~L~-~~l~~k~i~~~~~s~~~~~g 185 (203)
-++||++.|- .+|+-+ |++. ..++.|.+.++.++.+...+
T Consensus 69 AD~iIi~tP~Y~~s~~~~LKn~l---D~~~~~~l~~K~~~~v~~~g~~~~~ 116 (174)
T TIGR03566 69 ADLLVVGSPVYRGSYTGLFKHLF---DLVDPNALIGKPVLLAATGGSERHA 116 (174)
T ss_pred CCEEEEECCcCcCcCcHHHHHHH---HhcCHhHhCCCEEEEEEecCCccch
Confidence 4889999985 345544 4554 35777888888877655444
No 18
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=37.19 E-value=38 Score=23.38 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhhhCCCCCccEEEEecChhh
Q psy9095 123 YVRKVAEVATTLFITNDKPNIAGLILAGSADF 154 (203)
Q Consensus 123 ~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~ 154 (203)
-=.++|+.+.+.+.. ...++.+=++||||.
T Consensus 52 ~P~~iA~~i~~~l~~--~~~i~~vev~gpGFi 81 (85)
T PF03485_consen 52 NPREIAEEIAEKLEK--SPIIEKVEVAGPGFI 81 (85)
T ss_dssp -HHHHHHHHHHCHCT--TTTEEEEEEETTTEE
T ss_pred CHHHHHHHHHHhcCC--CCCEEEEEEcCCcEE
Confidence 344677777776643 234899999999984
No 19
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=31.33 E-value=40 Score=23.06 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.4
Q ss_pred CCcchHHHHHHHHHhhhccccc
Q psy9095 181 GGENGFNQAIELAAESLQNVLI 202 (203)
Q Consensus 181 ~~~~gl~E~l~~~~~~l~~~~~ 202 (203)
+-+++++++|.||+|.|++++.
T Consensus 18 S~d~Ai~~Ai~RA~~t~~~l~w 39 (71)
T COG3360 18 SIDAAIANAIARAADTLDNLDW 39 (71)
T ss_pred cHHHHHHHHHHHHHhhhhcceE
Confidence 3477999999999999988764
No 20
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.15 E-value=59 Score=29.15 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhh---hhh-CCCCCccEEEEecChhhHHhhh
Q psy9095 116 RMEKRHNYVRKVAEVATTL---FIT-NDKPNIAGLILAGSADFKTELS 159 (203)
Q Consensus 116 re~~i~~~~~~vae~~~~~---f~~-~~~~~~~~iIiaGpg~~k~~f~ 159 (203)
..+.++.|..++.+.+.+. |.. .....+++|+++|||.....+.
T Consensus 257 ~~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~ 304 (354)
T COG4972 257 GSEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLA 304 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHH
Confidence 3455678888888887753 333 2346799999999998766654
No 21
>PLN02854 3-ketoacyl-CoA synthase
Probab=30.13 E-value=1.1e+02 Score=29.06 Aligned_cols=86 Identities=19% Similarity=0.075 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhh-HHhhhccCCCChhhhhc-eeEEEECCCCCcchHHH
Q psy9095 111 RFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADF-KTELSQSDMFDPRLQAK-IIKLVDVSYGGENGFNQ 188 (203)
Q Consensus 111 RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~-k~~f~~~~~L~~~l~~k-~i~~~~~s~~~~~gl~E 188 (203)
+++..|+|.-.-.|.-+-+.+.+.= .+.++|+.||++-.++. ...+. ..+.+++.-+ -+..+|++..+.+|---
T Consensus 180 ~~~~~r~ea~~v~~~~~~~lL~kaG--i~p~dID~LIv~cS~~~p~PSlA--a~I~n~LGlr~~i~afdLsgmGCSggl~ 255 (521)
T PLN02854 180 CMEEARAEAEAVMFGALDSLFSKTG--VKPRDIGILIVNCSLFNPTPSLS--AMIVNHYKLRTDIKSYNLGGMGCSAGLI 255 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHCCEEEEECCCCCCCCCHH--HHHHHHhCCCCCceEEecccchhhhHHH
Confidence 5666677776666665555554432 23467999999654441 22221 1122222222 34579999889999999
Q ss_pred HHHHHHhhhccc
Q psy9095 189 AIELAAESLQNV 200 (203)
Q Consensus 189 ~l~~~~~~l~~~ 200 (203)
.|.-|+++|+.-
T Consensus 256 aL~lA~~lL~~~ 267 (521)
T PLN02854 256 SIDLANDLLKAN 267 (521)
T ss_pred HHHHHHHHHHhC
Confidence 999999999753
No 22
>COG4031 Predicted metal-binding protein [General function prediction only]
Probab=29.90 E-value=2.6e+02 Score=23.10 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhc
Q psy9095 117 MEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQ 160 (203)
Q Consensus 117 e~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~ 160 (203)
+..++.||..+||.+..+ .+..++++|..+..+++++
T Consensus 55 dg~lRNl~erlae~i~s~-------rpe~~~v~gs~e~I~~v~e 91 (227)
T COG4031 55 DGSLRNLYERLAERIYSY-------RPESIVVSGSEELIDEVLE 91 (227)
T ss_pred cchHHHHHHHHHHHHHhc-------CccceEecCChHHHHHHHh
Confidence 335678999999998664 4788999999999999885
No 23
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=29.26 E-value=1.2e+02 Score=25.40 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=25.6
Q ss_pred ccEEEEecCh-------hhHHhhhccCCCChh------hhhceeEEEECCC
Q psy9095 143 IAGLILAGSA-------DFKTELSQSDMFDPR------LQAKIIKLVDVSY 180 (203)
Q Consensus 143 ~~~iIiaGpg-------~~k~~f~~~~~L~~~------l~~k~i~~~~~s~ 180 (203)
-+++|++.|. -+|+-+ |++... +..|.++++.+|.
T Consensus 91 ADgvii~TPEYn~sipg~LKNai---Dwls~~~~~~~~~~~KpvaivgaSg 138 (219)
T TIGR02690 91 SEGQVWCSPERHGAITGSQKDQI---DWIPLSVGPVRPTQGKTLAVMQVSG 138 (219)
T ss_pred CCEEEEeCCccccCcCHHHHHHH---HhcccCcccccccCCCcEEEEEeCC
Confidence 4899999985 456655 567653 5678889998873
No 24
>PRK14878 UGMP family protein; Provisional
Probab=28.44 E-value=2.8e+02 Score=24.30 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEe-cChhh
Q psy9095 103 GRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILA-GSADF 154 (203)
Q Consensus 103 ~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIia-Gpg~~ 154 (203)
.+||.-+.-..|...+.+-...+++.+.+ +.+..+++.|.+. |||..
T Consensus 31 ~~gg~~p~~~~~~h~~~l~~~i~~~l~~a-----~~~~~did~Iavt~gPG~~ 78 (323)
T PRK14878 31 EKGGIHPREAAQHHAEVAPELLRKALEKA-----GISIEDIDAVAVSQGPGLG 78 (323)
T ss_pred CcCCcCccHHHHHHHHHHHHHHHHHHHHc-----CCCHHHCCEEEEecCCCcc
Confidence 45666663333333333333333333321 1223567888776 78754
No 25
>PRK00962 hypothetical protein; Provisional
Probab=27.99 E-value=3.2e+02 Score=21.94 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=54.0
Q ss_pred CCeeeEEEEeeeCCCC---ceeeeec--cCCccchHHHHHhHcC--CCcEEEEEEEC-CceEEEEEeCCeEEEE-EEEEe
Q psy9095 26 EGKEKKVNIDFEPFKP---INTSLYL--CDNKFHTEALTALLAD--DNKFGFIVMDG-NGALFGTLQGNTREVL-HKFTV 96 (203)
Q Consensus 26 ~G~~h~~t~~iepp~p---v~~~~~~--~~~~f~~e~L~~~~~~--~~~~~vvvvd~-g~a~i~~~~g~~~~~~-~~i~~ 96 (203)
+|... -+.++||.| +.-.+-- -.+......+.+.+.. ..++++-.--. |...||++++...... ..+..
T Consensus 54 e~~~~--lL~v~~~~p~~~~~~~kaysee~De~vA~~MA~~vr~~l~aDiaI~tTAGiGrG~i~i~~~~~~~~~tsdv~a 131 (165)
T PRK00962 54 SGIES--LLDIEPPEPDYVYKYIKAYNEENDLLVAKLMAEALKNKTNCDIAIGTTAGIGRGAICIVTDKNEYLFTSDVYA 131 (165)
T ss_pred HHHHH--hcCCCCccccchhccccccCcccCHHHHHHHHHHHHHHhCCCEEEEeccccCCceEEEEeCCceEEEecceee
Confidence 46666 788999998 3332211 1124444555555554 37777755443 6669999999887553 33555
Q ss_pred eCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9095 97 DLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATT 133 (203)
Q Consensus 97 ~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~ 133 (203)
++.. ++.=++| .+..+++-++...+.+++
T Consensus 132 dl~~-------~~~i~~R-q~~gi~~~~~~~~~~l~~ 160 (165)
T PRK00962 132 DLIT-------AENILKR-QKNGIEKALKKFLEILKK 160 (165)
T ss_pred cccc-------HHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 6632 2222223 344456555555554443
No 26
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=27.29 E-value=96 Score=26.28 Aligned_cols=36 Identities=11% Similarity=0.287 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhcc
Q psy9095 122 NYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQS 161 (203)
Q Consensus 122 ~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~ 161 (203)
+|.+++.+.+.+... ..--.||+||.|+..+.++.+
T Consensus 40 ~f~~~a~~~i~~i~~----rgk~PIlvGGTglYi~all~g 75 (253)
T PF01715_consen 40 DFQRDAREAIEDILA----RGKIPILVGGTGLYIQALLNG 75 (253)
T ss_dssp HHHHHHHHHHHHHHH----TT-EEEEEES-HHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHh----cCCeEEEECChHHHHHHHHhC
Confidence 455566666666543 234568999999999999863
No 27
>PRK09557 fructokinase; Reviewed
Probab=27.21 E-value=1.2e+02 Score=25.81 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCCCChhhhhc------eeEEEECCCCCcchHH
Q psy9095 120 RHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAK------IIKLVDVSYGGENGFN 187 (203)
Q Consensus 120 i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L~~~l~~k------~i~~~~~s~~~~~gl~ 187 (203)
++++.+.++..+..... .-+++.|||+|.-...+.|.+ .+...++++ .+.+.-++.+..+++.
T Consensus 225 l~~~~~~La~~l~~l~~---~ldP~~IvlgG~~~~~~~~~~--~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~ 293 (301)
T PRK09557 225 FRRYEDRLAKSLAHVIN---ILDPDVIVLGGGMSNVDRLYP--TLPALLKQYVFGGECETPVRKALHGDSSGVR 293 (301)
T ss_pred HHHHHHHHHHHHHHHHH---HhCCCEEEEcCcccchHHHHH--HHHHHHHHHhcccccCCeEEEcccCCchhhh
Confidence 34444444555444332 345799999997644444442 133333221 1234555566565553
No 28
>PRK09604 UGMP family protein; Validated
Probab=27.06 E-value=3.8e+02 Score=23.49 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=22.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEe-cChhh
Q psy9095 104 RGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILA-GSADF 154 (203)
Q Consensus 104 ~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIia-Gpg~~ 154 (203)
.||--+.--.|...+.+-..++++.+.+. .+..+++.|.++ |||..
T Consensus 39 ~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~-----~~~~did~iavt~GPG~~ 85 (332)
T PRK09604 39 YGGVVPELASRAHVENIVPLIEEALKEAG-----LTLEDIDAIAVTAGPGLV 85 (332)
T ss_pred cCCcCcchhHHHHHHHHHHHHHHHHHHcC-----CCHHHCCEEEEecCCCcH
Confidence 45554422223344444444444444321 123457777765 89864
No 29
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=26.61 E-value=1.7e+02 Score=24.61 Aligned_cols=46 Identities=15% Similarity=0.295 Sum_probs=26.3
Q ss_pred CCccEEEEecChhhHHhhhccCCCChhhhhc----eeEEEECCCCCcchHHH
Q psy9095 141 PNIAGLILAGSADFKTELSQSDMFDPRLQAK----IIKLVDVSYGGENGFNQ 188 (203)
Q Consensus 141 ~~~~~iIiaGpg~~k~~f~~~~~L~~~l~~k----~i~~~~~s~~~~~gl~E 188 (203)
-+++.|||+|+-...+.|.+ .+...+++. .+.+.-...+..+++.=
T Consensus 232 ~dpe~IvlgG~~~~~~~~~~--~i~~~l~~~~~~~~~~i~~s~~~~~~~~~G 281 (291)
T PRK05082 232 LDCQCVVLGGSVGLAEGYLE--LVQAYLAQEPAIYHVPLLAAHYRHDAGLLG 281 (291)
T ss_pred hCCCEEEEcCccccHHHHHH--HHHHHHHhcccccCCeEEECccCCchhhhh
Confidence 45799999998766666663 244444432 12334455555555443
No 30
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=26.36 E-value=3.1e+02 Score=21.28 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=22.5
Q ss_pred ccEEEEecCh-------hhHHhhhccCCCC-hhhhhceeEEEECC
Q psy9095 143 IAGLILAGSA-------DFKTELSQSDMFD-PRLQAKIIKLVDVS 179 (203)
Q Consensus 143 ~~~iIiaGpg-------~~k~~f~~~~~L~-~~l~~k~i~~~~~s 179 (203)
-++||++.|- .+|+-+ |++. ..++.|.+..+.++
T Consensus 66 AD~iI~~sP~Y~~sip~~LK~~i---D~~~~~~l~~K~v~~~~~g 107 (171)
T TIGR03567 66 ADGVVVATPVYKASYSGVLKALL---DLLPQRALRGKVVLPIATG 107 (171)
T ss_pred CCEEEEECCcccCCCCHHHHHHH---HhCChhhhCCCEEEEEEcC
Confidence 4899999994 345544 4564 35777877666655
No 31
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=26.02 E-value=1.2e+02 Score=27.75 Aligned_cols=37 Identities=11% Similarity=-0.082 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhh
Q psy9095 114 RLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADF 154 (203)
Q Consensus 114 R~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~ 154 (203)
+.+|.....-|+++|+.+++.-. ..=+-++++||...
T Consensus 177 vS~E~p~~~~~~~ia~~lr~~r~----~gG~Iv~V~GPAvv 213 (407)
T TIGR00300 177 VSSERPVETLIEQIAWEMYEIRD----KGGKIGVVAGPAVI 213 (407)
T ss_pred CCcCCccHHHHHHHHHHHHHHHH----CCCCEEEEecCeEE
Confidence 44566666778889998877532 24567999999853
No 32
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=25.48 E-value=1.2e+02 Score=23.09 Aligned_cols=33 Identities=24% Similarity=0.521 Sum_probs=23.6
Q ss_pred eCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy9095 97 DLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEV 130 (203)
Q Consensus 97 ~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~ 130 (203)
.+|+|+..|-+++ -|-..|...+++|+++|+..
T Consensus 60 plP~K~~~g~f~~-~FIe~Rr~~Le~FL~ri~~h 92 (126)
T cd07285 60 SLPDKQVTGRFEE-EFIKMRMERLQAWMTRMCRH 92 (126)
T ss_pred CCCCccccCCCCH-HHHHHHHHHHHHHHHHHHcC
Confidence 3788876664444 46666888899998888764
No 33
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=25.38 E-value=2e+02 Score=23.10 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=23.5
Q ss_pred ccEEEEecCh-------hhHHhhhccCCCCh-hhhhceeEEEECC
Q psy9095 143 IAGLILAGSA-------DFKTELSQSDMFDP-RLQAKIIKLVDVS 179 (203)
Q Consensus 143 ~~~iIiaGpg-------~~k~~f~~~~~L~~-~l~~k~i~~~~~s 179 (203)
-++||++.|- .+|+-| |++.. .++.|.+.++.++
T Consensus 67 AD~iIi~tP~Y~~s~pg~LKn~i---D~l~~~~l~~K~v~iiat~ 108 (191)
T PRK10569 67 ADGLIVATPVYKASFSGALKTLL---DLLPERALEHKVVLPLATG 108 (191)
T ss_pred CCEEEEECCccCCCCCHHHHHHH---HhCChhhhCCCEEEEEEec
Confidence 4899999994 345544 45654 5667887777776
No 34
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=24.69 E-value=1.1e+02 Score=23.14 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=14.6
Q ss_pred ccCcCCCCC-CeEEEEEeeEecC
Q psy9095 4 ISGRYLVPP-NGLVIYCGTIVTE 25 (203)
Q Consensus 4 ~~~~~~~p~-~Glv~f~G~~~~~ 25 (203)
++...+.|. .++|.|.|.+-..
T Consensus 6 ~~~~~~~~~~GAiv~F~G~VR~~ 28 (124)
T cd00756 6 LLAALRDPEAGAVVTFVGTVRDH 28 (124)
T ss_pred HHHhhhCCCCCEEEEEEEEECCC
Confidence 444555555 6688999998543
No 35
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=24.64 E-value=1.3e+02 Score=22.85 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=24.8
Q ss_pred eeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy9095 96 VDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEV 130 (203)
Q Consensus 96 ~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~ 130 (203)
-.+|+|+..|.++. -|-..|...+++|+++|+..
T Consensus 58 PpLP~K~~~g~f~~-~FIe~Rr~~Lq~FL~ria~h 91 (127)
T cd07286 58 PHIPEKQATGRFEE-DFISKRRKGLIWWMDHMCSH 91 (127)
T ss_pred CCCcCCCcCCCCCH-HHHHHHHHHHHHHHHHHHcC
Confidence 46888877665554 46666888888998887764
No 36
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=24.39 E-value=2.1e+02 Score=25.76 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhC--CCCCccEE-EEecChh
Q psy9095 117 MEKRHNYVRKVAEVATTLFITN--DKPNIAGL-ILAGSAD 153 (203)
Q Consensus 117 e~~i~~~~~~vae~~~~~f~~~--~~~~~~~i-IiaGpg~ 153 (203)
|.+.++|.+.+...+.+.+.+- ...+++.| +-.|||=
T Consensus 44 e~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL 83 (342)
T COG0533 44 ELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGL 83 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCc
Confidence 5666678888887777776432 23577777 4579983
No 37
>COG0314 MoaE Molybdopterin converting factor, large subunit [Coenzyme metabolism]
Probab=23.79 E-value=96 Score=24.41 Aligned_cols=40 Identities=13% Similarity=0.381 Sum_probs=23.2
Q ss_pred ccCcCCCCC--CeEEEEEeeEecCCCeeeEEEEeeeCCCCce
Q psy9095 4 ISGRYLVPP--NGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 43 (203)
Q Consensus 4 ~~~~~~~p~--~Glv~f~G~~~~~~G~~h~~t~~iepp~pv~ 43 (203)
++..+..|+ .++|.|.|.+-+.++-.....+..+.-.+..
T Consensus 18 ~i~~~~~~~~~GAivtF~G~VR~~~~G~~v~~L~yEaY~~ma 59 (149)
T COG0314 18 LIEALSEPSEAGAIVTFVGIVREENDGRRVEALEYEAYPEMA 59 (149)
T ss_pred HHHHHhCcccCceEEEEEEEEecCCCCceeeeEEEecCHHHH
Confidence 344443344 7789999999877643333355555544433
No 38
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=23.47 E-value=1.1e+02 Score=27.06 Aligned_cols=112 Identities=16% Similarity=0.231 Sum_probs=53.2
Q ss_pred CccchHHHHHhHcCC-CcEEEEEEECCce-EEEEEeCCeEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy9095 51 NKFHTEALTALLADD-NKFGFIVMDGNGA-LFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVA 128 (203)
Q Consensus 51 ~~f~~e~L~~~~~~~-~~~~vvvvd~g~a-~i~~~~g~~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~va 128 (203)
..|.-+.+.++++.. -+..++-|....= .+-+..+..-. .-+-+-|+= .- -+++++.|.+++-
T Consensus 60 Gg~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~---~Tein~~Gp------~i------s~~~~~~~l~~~~ 124 (310)
T COG1105 60 GGFTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGE---ETEINFPGP------EI------SEAELEQFLEQLK 124 (310)
T ss_pred CCccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCc---EEEecCCCC------CC------CHHHHHHHHHHHH
Confidence 455556666666664 3444444443332 66666553210 111223332 11 2455555655444
Q ss_pred HHHHhhhhhCCCCCccEEEEec--ChhhHHhhhccCCCChhhhhce-eEEEECCCCCcchHHHHHH
Q psy9095 129 EVATTLFITNDKPNIAGLILAG--SADFKTELSQSDMFDPRLQAKI-IKLVDVSYGGENGFNQAIE 191 (203)
Q Consensus 129 e~~~~~f~~~~~~~~~~iIiaG--pg~~k~~f~~~~~L~~~l~~k~-i~~~~~s~~~~~gl~E~l~ 191 (203)
..+ .+.+.+|++| |.-...+++.. |-+.+++.= -.++|+|. +.|.++|+
T Consensus 125 ~~l---------~~~d~VvlsGSlP~g~~~d~y~~--li~~~~~~g~~vilD~Sg---~~L~~~L~ 176 (310)
T COG1105 125 ALL---------ESDDIVVLSGSLPPGVPPDAYAE--LIRILRQQGAKVILDTSG---EALLAALE 176 (310)
T ss_pred Hhc---------ccCCEEEEeCCCCCCCCHHHHHH--HHHHHHhcCCeEEEECCh---HHHHHHHc
Confidence 332 2357799999 33344444421 334344311 13578775 45555554
No 39
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=22.98 E-value=1.3e+02 Score=25.55 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCCCChhhhhc
Q psy9095 117 MEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAK 171 (203)
Q Consensus 117 e~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L~~~l~~k 171 (203)
++.+++|++++++.+..+... -.++-.+.+ |.-++-..|. ||..+++.+
T Consensus 69 ~e~~~~~~~e~a~~va~~l~~--G~~VAf~~l-GDP~~YsTf~---~l~~~l~~~ 117 (234)
T COG2243 69 REELEDAWEEAAAEVAAELEA--GRDVAFLTL-GDPTFYSTFM---YLLERLRER 117 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCeEEEEEc-cCccHHHHHH---HHHHHhhcc
Confidence 466788999999998887643 224544444 5555666665 677777776
No 40
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=22.78 E-value=3.5e+02 Score=23.35 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=28.7
Q ss_pred EEEEEEeeCCCcC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEE-ecChhh
Q psy9095 90 VLHKFTVDLPKKH-GRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLIL-AGSADF 154 (203)
Q Consensus 90 ~~~~i~~~vp~Kh-~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIi-aGpg~~ 154 (203)
++.....+.+.+| ..||-.+..-.|...+.+-..++++.+.+ +.+..+++.|.+ .|||..
T Consensus 21 il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~-----~~~~~did~iav~~GPG~~ 82 (305)
T TIGR00329 21 VLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIES-----NVDKSEIDLIAYTQGPGLG 82 (305)
T ss_pred EEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHc-----CCCHHHCCEEEEecCCCch
Confidence 3444444445543 45777663333333433333333333321 112345777766 589854
No 41
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=22.71 E-value=1.5e+02 Score=25.82 Aligned_cols=36 Identities=8% Similarity=0.165 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhc
Q psy9095 121 HNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQ 160 (203)
Q Consensus 121 ~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~ 160 (203)
.+|++...+.+.+... ..--.|++||.|+..+.++.
T Consensus 71 ~~f~~~a~~~i~~~~~----~g~~pi~vGGTg~Yi~all~ 106 (287)
T TIGR00174 71 ADFQTLALNAIADITA----RGKIPLLVGGTGLYLKALLE 106 (287)
T ss_pred HHHHHHHHHHHHHHHh----CCCCEEEEcCcHHHHHHHHc
Confidence 3566666777666542 22356999999999999885
No 42
>KOG0458|consensus
Probab=22.46 E-value=66 Score=30.93 Aligned_cols=107 Identities=16% Similarity=0.108 Sum_probs=56.2
Q ss_pred CCCCeEEEEEeeEecCCCeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCCCcEEEEEEEC--CceEEEEEeCCe
Q psy9095 10 VPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDG--NGALFGTLQGNT 87 (203)
Q Consensus 10 ~p~~Glv~f~G~~~~~~G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~~~~~vvvvd~--g~a~i~~~~g~~ 87 (203)
.-++|.-.+.|+.--+ -..+.+|+--.|+. ..|-...+..+.. .+++++|||. |+...|+..+..
T Consensus 236 ERerGvTm~v~~~~fe-s~~~~~tliDaPGh----------kdFi~nmi~g~sq--aD~avLvvd~s~~~FE~gfd~~gQ 302 (603)
T KOG0458|consen 236 ERERGVTMDVKTTWFE-SKSKIVTLIDAPGH----------KDFIPNMISGASQ--ADVAVLVVDASTGEFESGFDPGGQ 302 (603)
T ss_pred hhhcceeEEeeeEEEe-cCceeEEEecCCCc----------cccchhhhccccc--cceEEEEEECCcchhhhccCCCCc
Confidence 4456776666654222 11223344444431 2333333333333 4577888886 555667665555
Q ss_pred EEEEEEEEee--------CCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy9095 88 REVLHKFTVD--------LPKKHGRGGQSALRFARLRMEKRHNYVRKVAEV 130 (203)
Q Consensus 88 ~~~~~~i~~~--------vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~ 130 (203)
+.+...+-.+ .-+|-..=+|||.||+. ....+..|+++-+.-
T Consensus 303 trEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~e-Ik~~l~~fL~~~~gf 352 (603)
T KOG0458|consen 303 TREHALLLRSLGISQLIVAINKMDLVSWSQDRFEE-IKNKLSSFLKESCGF 352 (603)
T ss_pred hHHHHHHHHHcCcceEEEEeecccccCccHHHHHH-HHHHHHHHHHHhcCc
Confidence 4432221111 22344455699999988 466677777655553
No 43
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=21.26 E-value=84 Score=26.90 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=28.9
Q ss_pred CccchHHHHHhHcCCCcEE--EEEEECCce-EEEEEeCCe
Q psy9095 51 NKFHTEALTALLADDNKFG--FIVMDGNGA-LFGTLQGNT 87 (203)
Q Consensus 51 ~~f~~e~L~~~~~~~~~~~--vvvvd~g~a-~i~~~~g~~ 87 (203)
.++=++|+..++.....|+ +||||.|.| +|..+.+++
T Consensus 103 ~elG~DR~~n~vaA~~~~~~~~vVVD~GTA~Tid~v~~~~ 142 (251)
T COG1521 103 EELGADRIANAVAAYHKYGKAVVVVDFGTATTIDLVDEGG 142 (251)
T ss_pred hhhcHHHHHHHHHHHHHcCCcEEEEEcCCeEEEEEEcCCC
Confidence 4555677777777765455 899999999 999998877
No 44
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=21.13 E-value=1.6e+02 Score=22.86 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=23.6
Q ss_pred eeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy9095 96 VDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEV 130 (203)
Q Consensus 96 ~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~ 130 (203)
-.+|.|+..-|....-|.+.|...+++|+++|+..
T Consensus 90 PplP~k~~~~~~~~~E~~~~rr~~LqrfL~RV~~h 124 (140)
T cd06891 90 PALPLPSTSYGSNNEEDARKLKANLQRWFNRVCSD 124 (140)
T ss_pred CCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 35777764323444456666788899999988864
No 45
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=21.08 E-value=4.7e+02 Score=22.70 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=25.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEe-cChhh
Q psy9095 103 GRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILA-GSADF 154 (203)
Q Consensus 103 ~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIia-Gpg~~ 154 (203)
.+||.-+.-..|...+.+-..++++.+.+. .+..+++.|.+. |||..
T Consensus 32 ~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~-----~~~~did~Iavt~gPg~~ 79 (322)
T TIGR03722 32 EKGGIHPREAAEHHAEVAPKLIKEALEEAG-----VSLEDIDAVAFSQGPGLG 79 (322)
T ss_pred CcCCcChhHHHHHHHHHHHHHHHHHHHHcC-----CCHHHCCEEEEecCCchH
Confidence 356777744444445444444444444321 123468888776 78754
No 46
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=21.05 E-value=3.7e+02 Score=23.42 Aligned_cols=99 Identities=8% Similarity=0.113 Sum_probs=50.7
Q ss_pred CcEEEEEEECCceEEEEEeCCeEEEEEEEEeeCCCcCCCC------CcchHHHH----------HHHHHHHHHHHHHHHH
Q psy9095 66 NKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRG------GQSALRFA----------RLRMEKRHNYVRKVAE 129 (203)
Q Consensus 66 ~~~~vvvvd~g~a~i~~~~g~~~~~~~~i~~~vp~Kh~~G------G~S~~Rfe----------R~re~~i~~~~~~vae 129 (203)
..+++|=+......+.++.+........+.. .+.+-.- +-+-..-+ ....+.+..++++++.
T Consensus 180 ~~~~lvdiG~~~t~~~i~~~g~~~f~R~i~~--G~~~l~~~i~~~~~i~~~~Ae~~k~~~~l~~~~~~~~l~~~~~~l~~ 257 (340)
T PF11104_consen 180 ETVALVDIGASSTTVIIFQNGKPIFSRSIPI--GGNDLTEAIARELGIDFEEAEELKRSGGLPEEYDQDALRPFLEELAR 257 (340)
T ss_dssp -EEEEEEE-SS-EEEEEEETTEEEEEEEES---SHHHHHHHHHHHTT--HHHHHHHHHHT------HHHHHHHHHHHHHH
T ss_pred ceEEEEEecCCeEEEEEEECCEEEEEEEEee--CHHHHHHHHHHhcCCCHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH
Confidence 3456655666667888988888766555432 1110000 00000001 1123456677778877
Q ss_pred HHHhhh---hh-CCCCCccEEEEecChhhHHhhhccCCCChhh
Q psy9095 130 VATTLF---IT-NDKPNIAGLILAGSADFKTELSQSDMFDPRL 168 (203)
Q Consensus 130 ~~~~~f---~~-~~~~~~~~iIiaGpg~~k~~f~~~~~L~~~l 168 (203)
.+.+.+ .. .....++.|+|+|.|.....+. +||..++
T Consensus 258 EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~--~~l~~~l 298 (340)
T PF11104_consen 258 EIRRSLDFYQSQSGGESIERIYLSGGGARLPGLA--EYLSEEL 298 (340)
T ss_dssp HHHHHHHHHHHH------SEEEEESGGGGSTTHH--HHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEECCccchhhHH--HHHHHHH
Confidence 777654 22 2345799999999998877766 4565554
No 47
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=20.56 E-value=1.3e+02 Score=26.76 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChh
Q psy9095 117 MEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSAD 153 (203)
Q Consensus 117 e~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~ 153 (203)
.+...+.|.++.+.+.+. .++.||+||.=|
T Consensus 22 ~~d~~~~f~~~l~~a~~~-------~vD~vliAGDlF 51 (390)
T COG0420 22 LEDQKKAFDELLEIAKEE-------KVDFVLIAGDLF 51 (390)
T ss_pred hHHHHHHHHHHHHHHHHc-------cCCEEEEccccc
Confidence 444456777777776553 589999999765
No 48
>COG5622 Protein required for attachment to host cells [Cell motility and secretion]
Probab=20.16 E-value=59 Score=25.25 Aligned_cols=55 Identities=11% Similarity=0.173 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCCCChhhhhceeEEEECCC
Q psy9095 121 HNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSY 180 (203)
Q Consensus 121 ~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L~~~l~~k~i~~~~~s~ 180 (203)
+.|-..+++.+.+.... ..++.|||.-+--+--++.+ .|++.+++++++.++=..
T Consensus 70 ~~fa~~~a~~l~r~v~~---g~~~~LvIiAaPrtLG~lRK--~lh~~lk~~~~~EI~Kdl 124 (139)
T COG5622 70 DSFAAEIAKELNRSVHG---GKFKNLVIIAAPRTLGELRK--ELHKGLKEKLTAEIAKDL 124 (139)
T ss_pred hhHHHHHHHHHHHHHhh---cccceeEEEeCchhHHHHHH--HHHHHHHHHHHHHHhhHh
Confidence 47888999999988764 34566666555556666663 377778777765554433
Done!