Query psy9095
Match_columns 203
No_of_seqs 119 out of 458
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 18:45:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e20_C Eukaryotic peptide chai 100.0 2.5E-46 8.5E-51 338.1 1.1 192 9-202 92-285 (441)
2 3agk_A Peptide chain release f 100.0 6.9E-42 2.4E-46 303.5 14.9 191 9-202 87-279 (373)
3 1dt9_A ERF1, protein (eukaryot 100.0 1.3E-41 4.4E-46 307.4 11.5 192 9-202 87-280 (437)
4 3mca_B Protein DOM34, elongati 100.0 1.3E-37 4.4E-42 277.5 9.8 177 10-202 75-271 (390)
5 2vgn_A DOM34; translation term 100.0 1.5E-35 5.2E-40 263.9 15.7 178 10-202 75-277 (386)
6 3agj_B Protein pelota homolog; 100.0 4.1E-35 1.4E-39 258.9 14.7 174 10-202 71-252 (358)
7 3obw_A Protein pelota homolog; 100.0 1.5E-35 5.3E-40 261.9 10.5 171 10-202 87-265 (364)
8 3oby_A Protein pelota homolog; 100.0 3.2E-35 1.1E-39 258.8 12.2 165 10-202 73-246 (352)
9 3j15_A Protein pelota; ribosom 100.0 2.6E-35 9E-40 260.0 5.1 175 10-202 73-260 (357)
10 2qi2_A Pelota, cell division p 100.0 2.2E-32 7.5E-37 240.5 7.2 163 12-202 81-247 (347)
11 3gfs_A FMN-dependent NADPH-azo 43.2 54 0.0018 24.2 6.0 54 143-199 64-124 (174)
12 3u7r_A NADPH-dependent FMN red 38.5 23 0.00078 27.5 3.2 42 143-187 68-121 (190)
13 3eno_A Putative O-sialoglycopr 36.9 1.7E+02 0.0058 24.4 8.7 73 70-153 8-85 (334)
14 3gdz_A Arginyl-tRNA synthetase 36.7 23 0.00078 25.0 2.7 29 124-154 58-86 (109)
15 4hs4_A Chromate reductase; tri 33.4 59 0.002 25.0 4.9 41 143-186 74-125 (199)
16 2ivn_A O-sialoglycoprotein end 30.8 2.3E+02 0.0077 23.4 10.6 14 140-153 66-80 (330)
17 2ych_A Competence protein PILM 30.5 1.6E+02 0.0053 24.4 7.4 39 121-159 281-323 (377)
18 3svl_A Protein YIEF; E. coli C 25.1 81 0.0028 24.0 4.3 41 143-185 73-123 (193)
19 1k2d_P MBP peptide, myelin bas 24.9 17 0.00058 18.8 0.2 10 102-111 1-10 (26)
20 3k1y_A Oxidoreductase; structu 21.4 96 0.0033 23.7 4.0 38 143-182 86-130 (191)
21 2pk8_A Uncharacterized protein 20.7 1.8E+02 0.0061 20.3 4.8 33 119-154 14-46 (103)
22 3u61_B DNA polymerase accessor 20.4 1.4E+02 0.0049 23.9 5.1 49 143-194 48-97 (324)
No 1
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-46 Score=338.10 Aligned_cols=192 Identities=73% Similarity=1.170 Sum_probs=51.5
Q ss_pred CCCCCeEEEEEeeEecCC--CeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCCCcEEEEEEECCceEEEEEeCC
Q psy9095 9 LVPPNGLVIYCGTIVTEE--GKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGN 86 (203)
Q Consensus 9 ~~p~~Glv~f~G~~~~~~--G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~~~~~vvvvd~g~a~i~~~~g~ 86 (203)
++|+||+|+|||.+++++ |++| |++|+||.||++++|.||++|+++||+++++++.++++|+||+++|+++++.|+
T Consensus 92 ~vp~~g~v~~~G~~~~e~~~~~~~--T~~iep~~pi~i~k~~~w~~~~le~L~eal~~~~~~gvVvvD~~ga~i~~l~g~ 169 (441)
T 3e20_C 92 KVPDNGLVIYCGEVIMEGNKTRKL--NIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGS 169 (441)
T ss_dssp SCTTSCCEEEEEEECCGGGCCEEE--EEEECCSCCTTCCEEEEESSCCCTTGGGGC------------------------
T ss_pred cCCCCCEEEEeceeeccCCceeEE--EEEecCCCceEEEEEccCCHHHHHHHHHHhCccCcEEEEEEecCCeEEEEEecC
Confidence 699999999999998776 6666 999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCCCCh
Q psy9095 87 TREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDP 166 (203)
Q Consensus 87 ~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L~~ 166 (203)
.++++++++.++|+||++|||||+||+|+|++++++||++|++.+.++|...++..+++|||||||++|++|.+.++|++
T Consensus 170 ~~evl~~i~~~vPkK~~~GG~S~~RF~R~ree~~~~f~~~Vae~l~~~~~~~~~~~v~~lVlaGPg~~k~~f~~~~~l~~ 249 (441)
T 3e20_C 170 AREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFITDDKPNVAGIVLAGSADFKTELGQSDLFDQ 249 (441)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEEEEecCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcCEEEEECCHHHHHHHHHhcccCH
Confidence 99999999999999999999999999999999999999999999999986544568999999999999999997779999
Q ss_pred hhhhceeEEEECCCCCcchHHHHHHHHHhhhccccc
Q psy9095 167 RLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVLI 202 (203)
Q Consensus 167 ~l~~k~i~~~~~s~~~~~gl~E~l~~~~~~l~~~~~ 202 (203)
+++++++.++|+||++++|++|+|++++++|++.++
T Consensus 250 ~L~~kvv~~vdvs~gg~~Gl~EvL~~~~~~L~d~k~ 285 (441)
T 3e20_C 250 RLQSRIIKTVDVSYGGDAGFNQAIELAADTLSNVKY 285 (441)
T ss_dssp --------------------------------CHHH
T ss_pred HHHhheEEEEECCCCCccCHHHHHHHHHHHHHHHHH
Confidence 999998889999999999999999999999988764
No 2
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=100.00 E-value=6.9e-42 Score=303.55 Aligned_cols=191 Identities=33% Similarity=0.568 Sum_probs=163.2
Q ss_pred CCCCCeEEEEEeeEecCCCeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCCCcEEEEEEECCceEEEEEeCCeE
Q psy9095 9 LVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTR 88 (203)
Q Consensus 9 ~~p~~Glv~f~G~~~~~~G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~~~~~vvvvd~g~a~i~~~~g~~~ 88 (203)
++|+||+|+|||... ..|++| |++++||.|++.++|.||++|+++||.++++++.++++|+||+++|.||+++++.+
T Consensus 87 ~~~~~Gl~vf~~~~~-~~~~~~--t~~~~~~~p~~~~~~~~~~~f~l~~L~~~~~~~~~~~vvvvd~~~A~i~~~~~~~~ 163 (373)
T 3agk_A 87 STPPNGLVLFCGEDM-STGKFE--CFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNNAIGIIIVERDQATIGLLKGARL 163 (373)
T ss_dssp SCCTTCEEEEEEC------CCE--EEEEBCSSCCCSCEEEEESSCCCHHHHTTSSCSCEEEEEEEETTEEEEEEEETTEE
T ss_pred CCCCCEEEEEEecCC-CCccEE--EEEecCCCCceEEEEecCChhHHHHHHHHhcCCCCEEEEEEeCCcEEEEEEeCcEE
Confidence 689999999999864 347788 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCC-CCCccEEEEecChhhHHhhhccCCCChh
Q psy9095 89 EVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITND-KPNIAGLILAGSADFKTELSQSDMFDPR 167 (203)
Q Consensus 89 ~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~-~~~~~~iIiaGpg~~k~~f~~~~~L~~~ 167 (203)
++++.++.++|+||.+||||+.||+|++++.+++||++|++.+.++|.+.+ +.++++|||||||++|++|.+++||+++
T Consensus 164 ~~~~~i~~~vp~K~~~gG~s~~rf~r~~e~~~~~f~~~V~~~l~~~~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l~~~ 243 (373)
T 3agk_A 164 EVLKELEGFVPGKHKMGGQSQRRYERIIEQMVDEFFKKVGEEASNLLVPLAEKGVLKGVIVAGPGLAKQEFVEGNYLDYR 243 (373)
T ss_dssp EEEEEEECCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEESTTHHHHHHHSSCSCHH
T ss_pred EEEEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcceEEEECChHHHHHhhhhhhcChH
Confidence 999999999999999999999999999999999999999999999985322 3578999999999999999988899999
Q ss_pred hhhcee-EEEECCCCCcchHHHHHHHHHhhhccccc
Q psy9095 168 LQAKII-KLVDVSYGGENGFNQAIELAAESLQNVLI 202 (203)
Q Consensus 168 l~~k~i-~~~~~s~~~~~gl~E~l~~~~~~l~~~~~ 202 (203)
++++++ +++|+|+++++|++|++++++++|++.++
T Consensus 244 l~~~vi~~~v~~s~~~~~g~~E~l~~~~~~l~~~~~ 279 (373)
T 3agk_A 244 LKKILAPELVDVAYQGLQGLKEAVMKAEKVVEAQMY 279 (373)
T ss_dssp HHTTBCSSCEECCCCHHHHHHHHHHHCTTCGGGHHH
T ss_pred hhhCceeEEEccCCCccccHHHHHHHHHHHHHHHHH
Confidence 999987 68999999999999999999999988653
No 3
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=100.00 E-value=1.3e-41 Score=307.41 Aligned_cols=192 Identities=86% Similarity=1.315 Sum_probs=178.7
Q ss_pred CCCCCeEEEEEeeEecCCC--eeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCCCcEEEEEEECCceEEEEEeCC
Q psy9095 9 LVPPNGLVIYCGTIVTEEG--KEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGN 86 (203)
Q Consensus 9 ~~p~~Glv~f~G~~~~~~G--~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~~~~~vvvvd~g~a~i~~~~g~ 86 (203)
++|+||+|+|||.+..++| ++| |++++||.|++.+.|.||++|+++||.++++++.++++|+||+++|.||+++++
T Consensus 87 ~~~~~Glvvf~g~~~~~~g~~~~~--tl~~e~~~pi~~~~~~~~~~f~l~~L~~~~~~~~~~~vvvvd~~~A~i~~~~~~ 164 (437)
T 1dt9_A 87 KVPPNGLVVYCGTIVTEEGKEKKV--NIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGN 164 (437)
T ss_dssp SCCTTCEEEEEEEEECGGGCEEEE--EEEECCSCCTTCCEEEEESSCCCHHHHHHCCCCCEEEEEECCSSCCCEEEEETT
T ss_pred CCCCCeEEEEeCccccCCCceEEE--EEEecCCCCCceeEEEecChhhHHHHHHHhcCCCCEEEEEEeCCceEEEEEcCc
Confidence 5899999999999887767 566 999999999987778899999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCCCCh
Q psy9095 87 TREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDP 166 (203)
Q Consensus 87 ~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L~~ 166 (203)
.++.+++++.++|+||++|||||.||+|+|++.+++||++|++.+.++|...+..++++|||||||++|++|.+.+++++
T Consensus 165 ~~~~~~~i~~~~P~K~~~Gg~s~~Rf~R~ree~~~~f~~~Vae~l~~~~~~~~~~~~~~lIlaGpg~~k~~f~~~~~l~~ 244 (437)
T 1dt9_A 165 TREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQ 244 (437)
T ss_dssp EEEEEECCCCCCSCCCCSSCSCSHHHHHHHHHHTTTTTTHHHHHTTTTTSCSSSCSSSCCEEEESTTTTHHHHSCSSSCT
T ss_pred EEEEEEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccEEEEECCHHHHHHHHHhhccCh
Confidence 99999999999999999999999999999999999999999999999886433457999999999999999998789999
Q ss_pred hhhhceeEEEECCCCCcchHHHHHHHHHhhhccccc
Q psy9095 167 RLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVLI 202 (203)
Q Consensus 167 ~l~~k~i~~~~~s~~~~~gl~E~l~~~~~~l~~~~~ 202 (203)
+++++++.++|+||++++|++|+|++++++|++.++
T Consensus 245 ~L~~~vv~~v~~s~g~~~gl~E~l~~~~~~l~~~k~ 280 (437)
T 1dt9_A 245 RLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKF 280 (437)
T ss_dssp TTTTTCCCEEECSSCTTHHHHHHHHHHSSTTTSHHH
T ss_pred hhHhcEEEEEecCCCccccHHHHHHHHHHHHHHHHH
Confidence 999998889999999999999999999999988754
No 4
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-37 Score=277.51 Aligned_cols=177 Identities=15% Similarity=0.145 Sum_probs=160.8
Q ss_pred CCCCeEEEEEeeEecCC-----CeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCC--CcEEEEEEECCceEEEE
Q psy9095 10 VPPNGLVIYCGTIVTEE-----GKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADD--NKFGFIVMDGNGALFGT 82 (203)
Q Consensus 10 ~p~~Glv~f~G~~~~~~-----G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~--~~~~vvvvd~g~a~i~~ 82 (203)
.|.+|++-++|.|..++ |+|| |++|+|+.||+++|+ ||++|++++|++++++. ..+++|++|+|+|+||+
T Consensus 75 ~~~~~~Lri~G~i~~~~~~vk~G~~H--Tl~ie~~~~i~i~K~-~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~l 151 (390)
T 3mca_B 75 DTKAAQLHIKGRTTEYHPEVKMGSYH--TLDLELHRNFTLYKN-EWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICL 151 (390)
T ss_dssp CTTSSCEEEC-CBCSCCC---CCSCC--CCCCCSSSCCBCC-C-CCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEE
T ss_pred cCCCCEEEEEEEEecCCccccccceE--EEEEecCCcEEEEEc-CCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEE
Confidence 79999999999999776 9999 999999999999995 89999999999999986 66999999999999999
Q ss_pred EeCCeEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccC
Q psy9095 83 LQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSD 162 (203)
Q Consensus 83 ~~g~~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~ 162 (203)
+++++++.+++++.++|+||++||+ + |++.+++||++|++.+.++| ++.++++||||||||+|++|+ +
T Consensus 152 l~~~~~~~~~~i~~~iPkK~~~gg~-~------~~~~~~~F~~~V~e~l~~~~---d~~~v~~iIlaGPgf~K~~f~--~ 219 (390)
T 3mca_B 152 ITDYMTILRQRIDQVIPRKRRGDSS-A------YQKGLDKFYDSVFQSINSEF---DFDKLKVVILASPGFVARGLY--D 219 (390)
T ss_dssp ECSSCEEEEEEEECCCCCCBTTBCH-H------HHHHHHHHHHHHHHHHHHHC---CTTTCSEEEEEESSSHHHHHH--H
T ss_pred EcCCEEEEEEEEEEeCCCcCCCCch-h------HHHHHHHHHHHHHHHHHHHh---cccCCcEEEEECChHHHHHHH--H
Confidence 9999999999999999999998875 5 79999999999999999987 467899999999999999999 4
Q ss_pred CCChhh-----------hhceeEEEECCCCCcchHHHHHHH--HHhhhccccc
Q psy9095 163 MFDPRL-----------QAKIIKLVDVSYGGENGFNQAIEL--AAESLQNVLI 202 (203)
Q Consensus 163 ~L~~~l-----------~~k~i~~~~~s~~~~~gl~E~l~~--~~~~l~~~~~ 202 (203)
||++++ +.++ .++|+|+++++||+|+|++ ++++|++.++
T Consensus 220 ~L~~~~~~~~~k~l~~~~~k~-~vv~~s~gg~~gl~Evl~~~~v~~~l~~~k~ 271 (390)
T 3mca_B 220 YIFSMAVKLDLKQIVKSKNKF-VILHSSTGHIHSLNEILKDPAVESKLADTKY 271 (390)
T ss_dssp HHHHHHHHTTCHHHHHHGGGE-EEEECSCSSGGGGGTSSSCHHHHHHHTTSHH
T ss_pred HHHHHHhhccchhhhhhcCeE-EEEEcCCCcchhHHHHHhChhHHHHHHHHHH
Confidence 788754 4566 6899999999999999999 7999998765
No 5
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=100.00 E-value=1.5e-35 Score=263.93 Aligned_cols=178 Identities=17% Similarity=0.159 Sum_probs=153.7
Q ss_pred CCCCeEEEEEeeEecC--C--------CeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcC--CCcEEEEEEECCc
Q psy9095 10 VPPNGLVIYCGTIVTE--E--------GKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLAD--DNKFGFIVMDGNG 77 (203)
Q Consensus 10 ~p~~Glv~f~G~~~~~--~--------G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~--~~~~~vvvvd~g~ 77 (203)
.|.+|++-+||.|..+ . |+|| |++++||.||+++||. |++|++++|++++++ +..+++|+||+|+
T Consensus 75 ~~~~~~lri~G~i~~~~~~~~~~~vk~g~~h--T~~iep~~~i~i~k~~-w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~ 151 (386)
T 2vgn_A 75 DMKDEYLKYKGVTVTDESGASNVDIPVGKYL--SFTLDYVYPFTIIKQN-FNKFMQKLLNEACNIEYKSDTAAVVLQEGI 151 (386)
T ss_dssp ETTTTEEEEEEEECCCTTSSSSTTCCTTCEE--EEECCSSSCEEEEESC-CCHHHHHHHHHTTCTTTTTCEEEEEEETTE
T ss_pred cCCCCEEEEEEEEEccCCccccccccCccEE--EEEEeCCCeEEEEEcc-CChhhHHHHHHHhccccCCCEEEEEEECCc
Confidence 6999999999999844 2 8999 9999999999999998 999999999999985 5999999999999
Q ss_pred eEEEEEeCCeEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHh
Q psy9095 78 ALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTE 157 (203)
Q Consensus 78 a~i~~~~g~~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~ 157 (203)
|.||++++++++++++++.++|+||+.|++|+ |++.+++||++|++++.++| ++.++++||||||||+|++
T Consensus 152 A~i~~l~~~~~~~~~~i~~~iP~K~~~g~~s~------~~~~~~~F~~~V~~~l~~~~---~~~~v~~lIlaGPg~~k~~ 222 (386)
T 2vgn_A 152 AHVCLVTSSSTILKQKIEYSMPKKKRTTDVLK------FDEKTEKFYKAIYSAMKKDL---NFDKLKTIILCSPGFYAKI 222 (386)
T ss_dssp EEEEEECSSCEEEEEEEEC---------CCSS------CCHHHHHHHHHHHHHHHHHC---CTTTCSEEEEEESTTHHHH
T ss_pred EEEEEEECCEEEEEEEEEecCCCCccCCCcch------HHHHHHHHHHHHHHHHHHHh---cccCCcEEEEECCHHHHHH
Confidence 99999999999999999999999998764565 67889999999999999988 3578999999999999999
Q ss_pred hhccCCCChhhh-----------hceeEEEECCCCCcchHHHHHHH--HHhhhccccc
Q psy9095 158 LSQSDMFDPRLQ-----------AKIIKLVDVSYGGENGFNQAIEL--AAESLQNVLI 202 (203)
Q Consensus 158 f~~~~~L~~~l~-----------~k~i~~~~~s~~~~~gl~E~l~~--~~~~l~~~~~ 202 (203)
|. +||+++++ +++ .++|+|+++++|++|+|++ ++++|++.++
T Consensus 223 f~--~~l~~~~~~~~~~~~~~~~~ki-~vv~~s~~~~~gl~Evl~~~~v~~~L~d~k~ 277 (386)
T 2vgn_A 223 LM--DKIFQYAEEEHNKKILDNKGMF-FIAHCSTGYLQGINEVLKNPLYASKLQDTKY 277 (386)
T ss_dssp HH--HHHHHHHHHTTCHHHHTTGGGE-EEEECSCSSTHHHHHHHHCGGGHHHHHHHHT
T ss_pred HH--HHHHHHhhhhccchhhhccCcE-EEEECCCCccccHHHHHhChHHHHHHHHHHH
Confidence 99 68988764 566 6899999999999999999 9999988764
No 6
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=100.00 E-value=4.1e-35 Score=258.92 Aligned_cols=174 Identities=18% Similarity=0.210 Sum_probs=160.3
Q ss_pred CCCCeEEEEEeeEecCC------CeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCCCcEEEEEEECCceEEEEE
Q psy9095 10 VPPNGLVIYCGTIVTEE------GKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTL 83 (203)
Q Consensus 10 ~p~~Glv~f~G~~~~~~------G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~~~~~vvvvd~g~a~i~~~ 83 (203)
+.+|+|.+ +|.|..++ |+|| |++++||.||+++||.||++|+++||.++ +.+..+++|+||+++|.||++
T Consensus 71 ~~~~~Lri-~G~i~~~~~~~v~~g~~h--t~~ie~~~~i~i~k~~~w~~~~le~L~~~-~~~~~~~~vvvd~~~A~i~~l 146 (358)
T 3agj_B 71 PFTGKLRI-SGIVVEGPDEFGVKGRRH--STAVSIGTWLVVERDKGWSEQELERLAAG-RARGTAVIAAVDYDEFALAVL 146 (358)
T ss_dssp TTSCEEEE-EEEEEECCGGGCCTTSEE--EEEEETTCCEEEECTTCCCHHHHHHHHHC-CCCCEEEEEEECSSEEEEEEE
T ss_pred CCCCEEEE-EEEEccCCCcccccccEE--EEEEeCCCcEEEEEecCCCHhhHHHHHhh-CcCCCEEEEEEECCcEEEEEE
Confidence 55789988 99998654 7899 99999999999999988999999999999 888999999999999999999
Q ss_pred eCCeEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCC
Q psy9095 84 QGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDM 163 (203)
Q Consensus 84 ~g~~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~ 163 (203)
+++++++++.++.++|+|| | +| +++.+++||++|++.+.++|. +.++++|||||||++|++|. +|
T Consensus 147 ~~~~~~~~~~i~~~vpkK~--g--~q------~e~~~~~f~~~Va~~l~~~~~---~~~~~~lIlAGpg~~k~~f~--~~ 211 (358)
T 3agj_B 147 AGHGMKILEDTSARLPGKD--D--PS------REQEVEKYVDRAAKRIVEEAA---RHRSPIAVIAGPGQLKTSVA--EK 211 (358)
T ss_dssp ESSCEEEEEEEECCCCCTT--S--TT------HHHHHHHHHHHHHHHHHHHHH---HHTCSEEEEEESSSHHHHHH--HH
T ss_pred eCCEEEEEEEEEecCCCCC--c--hH------HHHHHHHHHHHHHHHHHHHhc---ccCCcEEEEECCHHHHHHHH--HH
Confidence 9999999999999999998 4 55 788999999999999999883 45699999999999999998 68
Q ss_pred CChhhhhceeEEEECCCCCcchHHHHHHHH--Hhhhccccc
Q psy9095 164 FDPRLQAKIIKLVDVSYGGENGFNQAIELA--AESLQNVLI 202 (203)
Q Consensus 164 L~~~l~~k~i~~~~~s~~~~~gl~E~l~~~--~~~l~~~~~ 202 (203)
|+++++++++.++|+|+++++|++|+|+++ ++.|++.++
T Consensus 212 L~~~~~~~~i~~v~~s~g~~~gl~E~l~~~~v~~~l~~~k~ 252 (358)
T 3agj_B 212 VQRAMPSLKVATVDTSMGGVAGVREALRRESVTRILRELSI 252 (358)
T ss_dssp HHHHSTTSEEEEEECSCCHHHHHHHHTTSHHHHHHTTTCHH
T ss_pred HHHHhhhceEEEEEcCCCCchhHHHHHhChhHHHHHHHHHH
Confidence 999999988899999999999999999997 999988754
No 7
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.5e-35 Score=261.89 Aligned_cols=171 Identities=15% Similarity=0.131 Sum_probs=143.6
Q ss_pred CCCCeEEEEEeeEecCC------CeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcCCCcEEEEEEECCceEEEEE
Q psy9095 10 VPPNGLVIYCGTIVTEE------GKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTL 83 (203)
Q Consensus 10 ~p~~Glv~f~G~~~~~~------G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~~~~~~vvvvd~g~a~i~~~ 83 (203)
.|.+|.+-++|.|..++ |+|| |++++|+.||+++||. |++|++++|+++++.+..+++|+||+|+|.||++
T Consensus 87 ~~~~~~Lri~G~iv~~~~~~v~~G~~H--T~~ie~~~~i~i~K~~-w~~~~le~L~e~~~~~~~~~~vv~d~g~A~i~~l 163 (364)
T 3obw_A 87 QEFTNRLRIHGIIEDAPERFGIKGAHH--TINLDIGDEIIIIKQQ-WNKYVLDRLKRQANKRSRIIIALVDFDEYLIAIP 163 (364)
T ss_dssp ETTTTEEEEEEEEEECCGGGCCTTCEE--EEEECTTCEEEEECSC-C--------------CCCEEEEEEETTEEEEEEE
T ss_pred cCCCCEEEEEEEEEeccccccccceEE--EEEEcCCCeEEEEEcc-CCHHHHHHHHHHhCcCCCEEEEEEECCcEEEEEE
Confidence 68899999999999765 9999 9999999999999987 9999999999999999999999999999999999
Q ss_pred eCCeEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCC
Q psy9095 84 QGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDM 163 (203)
Q Consensus 84 ~g~~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~ 163 (203)
++++++++++++.++|+||. +.+++||++|++.+.+++. +.++++||||||||+|++|. +|
T Consensus 164 ~~~~~~~~~~i~~~iPkK~~--------------~~~~~f~~~V~e~~~~~~~---~~~v~~iIlaGPg~~K~~f~--~~ 224 (364)
T 3obw_A 164 FEQGIKILSEKSLRPLNEEE--------------GIIEQNALEIATELAEYVK---QYDPDAILLAGPGFFKEEVS--KK 224 (364)
T ss_dssp CSSCEECCCEEECGGGCSST--------------THHHHHHHHHHHHHHHHHH---HHCCSEEEEECSSSHHHHHH--HH
T ss_pred eCCEEEEEEEEEeeCccchh--------------HHHHHHHHHHHHHHHHHhc---cccCCEEEEECChHHHHHHH--HH
Confidence 99999999999999999973 4456999999999999863 56799999999999999999 58
Q ss_pred CChhhhhceeEEEECCCCCcchHHHHHHH--HHhhhccccc
Q psy9095 164 FDPRLQAKIIKLVDVSYGGENGFNQAIEL--AAESLQNVLI 202 (203)
Q Consensus 164 L~~~l~~k~i~~~~~s~~~~~gl~E~l~~--~~~~l~~~~~ 202 (203)
|+++++++++.++|+||++++||+|+|++ ++++|++.++
T Consensus 225 l~~~~~~~~i~~vd~s~g~~~gl~Evl~~~~v~~~l~~~k~ 265 (364)
T 3obw_A 225 VNAILKNKKIYIDSVSSATRAGLHEVLKRDIIDKIMTDYEI 265 (364)
T ss_dssp HHTTTCCSEEEEECCSCSSHHHHHHHHTSHHHHHHHHHHHH
T ss_pred HHHHhhcCeEEEEeCCCCchHhHHHHHhchHHHHHHHHHHH
Confidence 99888888889999999999999999998 5888887654
No 8
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=100.00 E-value=3.2e-35 Score=258.77 Aligned_cols=165 Identities=18% Similarity=0.198 Sum_probs=144.5
Q ss_pred CCCCeEEEEEeeEecCC--CeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHc--CCCcEEEEEEECCceEEEEEeC
Q psy9095 10 VPPNGLVIYCGTIVTEE--GKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLA--DDNKFGFIVMDGNGALFGTLQG 85 (203)
Q Consensus 10 ~p~~Glv~f~G~~~~~~--G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~--~~~~~~vvvvd~g~a~i~~~~g 85 (203)
.|.+|..-++|.|..++ |+|| |++++||.||+++| ||++|++++|++|++ .++.+|+|+||.|+|.||++++
T Consensus 73 ~~~~~~Lri~G~i~~~~~~G~~h--T~~iep~~~i~i~k--~w~~~~~e~L~ea~~~~~~~~~~~vv~d~g~A~i~~l~~ 148 (352)
T 3oby_A 73 HRFANRLRVSGKIVAGIEESGYH--TLNITVGKELSIIK--KWKPEQLERLRRAVEDSNRPEIVMLTIEEGYAVAGVLRQ 148 (352)
T ss_dssp CSSSSCEEEEEEEEEC----CEE--EEEECTTCCEEEEE--ECCHHHHHHHHHHHTTSCCCCEEEEEEETTEEEEEEEET
T ss_pred cCCCCEEEEEEEEEecCCCCeEE--EEEEeCCCeEEEEE--cCCHHHHHHHHHHhhccccCcEEEEEEECCcEEEEEEeC
Confidence 68899999999999775 9999 99999999999999 899999999999999 5799999999999999999999
Q ss_pred CeEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCCCC
Q psy9095 86 NTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFD 165 (203)
Q Consensus 86 ~~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L~ 165 (203)
++++++++++.++|+|| | |.| ++||++|++.+.++ ++++||||||||+|++|. +||+
T Consensus 149 ~~~~~~~~i~~~ipkK~--g---~~r---------~~F~~~V~e~~~~~-------~v~~iIlaGPg~~K~~f~--~~l~ 205 (352)
T 3oby_A 149 WGVEEIFEERMGYGKGM--G---DSR---------KEFFGEVAAKLESF-------DFKYLIVAGPGFAKNDFL--DFLK 205 (352)
T ss_dssp TEEEEEEEEEC-------------CC---------CCHHHHHHHHHHHH-------CCSEEEEECSTTHHHHHH--HHHH
T ss_pred CEEEEEEEEeccCCCcc--c---hhH---------HHHHHHHHHHHHhc-------CCCEEEEECCHHHHHHHH--HHHH
Confidence 99999999999999986 3 322 58999999999987 489999999999999999 4898
Q ss_pred h---hhhhceeEEEECCCCCcchHHHHHHHH--Hhhhccccc
Q psy9095 166 P---RLQAKIIKLVDVSYGGENGFNQAIELA--AESLQNVLI 202 (203)
Q Consensus 166 ~---~l~~k~i~~~~~s~~~~~gl~E~l~~~--~~~l~~~~~ 202 (203)
+ ++++|++ ++|+||++++||+|+|+++ +++|++.++
T Consensus 206 ~~~~~l~~kvv-~v~~s~gg~~gl~Evl~~~~v~~~L~~~k~ 246 (352)
T 3oby_A 206 ERYPEMAKNAV-VVDVSSVGSRGFIEILKRRVVDKIVGEVRL 246 (352)
T ss_dssp HHCHHHHTTEE-ECCCCCCHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHhhCcEE-EEECCCCchhhHHHHHhChhHHHHHHHHHH
Confidence 8 6788887 9999999999999999999 999998765
No 9
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.6e-35 Score=260.03 Aligned_cols=175 Identities=20% Similarity=0.255 Sum_probs=159.0
Q ss_pred CCCCeEEEEEeeEecCC------CeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHc--CCCcEEEEEEECCceEEE
Q psy9095 10 VPPNGLVIYCGTIVTEE------GKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLA--DDNKFGFIVMDGNGALFG 81 (203)
Q Consensus 10 ~p~~Glv~f~G~~~~~~------G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~--~~~~~~vvvvd~g~a~i~ 81 (203)
.|.++..=+.|.|..++ |+|| |++++||.||+++||. |++|++++|+++++ .++++++|+||.|+|.||
T Consensus 73 ~~~~~~Lri~G~i~~~~~~~v~~G~~h--T~~ie~~~~i~i~k~~-w~~~~~e~L~ea~~~~~~~~~~~Vv~d~g~A~i~ 149 (357)
T 3j15_A 73 HKFANQVRVTGPIVYASREDVPLGKYH--TIAIEQGTVVTIQKPR-WKEHHIERLKEAVAASKRARVMIVVIDDGEADMA 149 (357)
T ss_dssp ETTTTEEEECCBEEECCCSSCCCSSBC--CEEECSSCCEEECTTC-CCHHHHHHHHHSCSSCCCSCCCEEEECSSCEEEE
T ss_pred cCCCCEEEEEEEEEeccccccccccEE--EEEecCCCeEEEEEec-CCHHHHHHHHHHHhccccCcEEEEEEECCcEEEE
Confidence 56677777899988766 9999 9999999999999987 99999999999999 569999999999999999
Q ss_pred EEeCCeEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhcc
Q psy9095 82 TLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQS 161 (203)
Q Consensus 82 ~~~g~~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~ 161 (203)
++++++++++++++.++|+||. +|+ +++.+++||++|++.+.++|. +.++++||||||||+|++|.
T Consensus 150 ~l~~~~~~~~~~i~~~ipkK~~---~~~------~e~~~~~f~~~Vae~~~~~~~---~~~v~~iilaGPg~~k~~f~-- 215 (357)
T 3j15_A 150 LVREYGVEILNSIRHNLGGKRY---NTD------RESEEMKFFHDVAKTMEEVMK---RENVEKAIVAGPGFVKEDFY-- 215 (357)
T ss_dssp EEETTEEEEEECCCCCSCSSSS---SCC------CCHHHHHHHHHHHHHHHHHHH---HHTCCCCEECCSTTHHHHHH--
T ss_pred EEeCCEEEEEEEEEecCCCCcc---cch------HHHHHHHHHHHHHHHHHHHhc---ccCCCEEEEECChHHHHHHH--
Confidence 9999999999999999999985 555 688999999999999999984 46799999999999999999
Q ss_pred CCCCh---hhhhceeEEEECCCCCcchHHHHHHHH--Hhhhccccc
Q psy9095 162 DMFDP---RLQAKIIKLVDVSYGGENGFNQAIELA--AESLQNVLI 202 (203)
Q Consensus 162 ~~L~~---~l~~k~i~~~~~s~~~~~gl~E~l~~~--~~~l~~~~~ 202 (203)
+||++ ++++|++ ++|+|+++++||+|+|+++ ++.|++.++
T Consensus 216 ~~l~~~~~~l~~kvv-~v~~s~g~~~gl~Evl~~~~v~~~l~~~k~ 260 (357)
T 3j15_A 216 KFLKEKYPELAKKVV-IEDTSVTGRTGIYEVIKRGVVDRVYQENRV 260 (357)
T ss_dssp HHHHHHSCCSSCEEC-CCCCSCCHHHHHHHHHHTCTHHHHHHHHHH
T ss_pred HHHHHhhHHhhCeEE-EEeCCCCchhhHHHHHhChhHHHHHHHHHH
Confidence 58988 6778887 9999999999999999998 888887654
No 10
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=99.97 E-value=2.2e-32 Score=240.49 Aligned_cols=163 Identities=15% Similarity=0.122 Sum_probs=136.4
Q ss_pred CCeEEEEEeeEecCCCeeeEEEEeeeCCCCceeeeeccCCccchHHHHHhHcC--CCcEEEEEEECCceEEEEEeCCeEE
Q psy9095 12 PNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLAD--DNKFGFIVMDGNGALFGTLQGNTRE 89 (203)
Q Consensus 12 ~~Glv~f~G~~~~~~G~~h~~t~~iepp~pv~~~~~~~~~~f~~e~L~~~~~~--~~~~~vvvvd~g~a~i~~~~g~~~~ 89 (203)
.+|+|+|+|.- .-|+|| |++++||.||+++| ||++|++++|++++++ +..+++|+||+++|.||++++++++
T Consensus 81 i~G~vv~~~~~--~~g~~h--tl~ie~~~~i~i~k--~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~ 154 (347)
T 2qi2_A 81 ILGTVIEGPED--TKGKHQ--SITVTVDSEISITK--EWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIFLIHPYGIQ 154 (347)
T ss_dssp ECC-----------CCSEE--EEEECTTCEEEEES--CCCHHHHHHHHHHTCHHHHCCEEEEEECSSEEEEEEECSSCEE
T ss_pred cceEEEEcCCC--CCccEE--EEEEcCCCeEEEEE--cCCHhHHHHHHHHhccccCCCEEEEEEeCCcEEEEEEECCEEE
Confidence 38999999863 349999 99999999999866 9999999999999997 6899999999999999999999999
Q ss_pred EEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhhHHhhhccCCCChhhh
Q psy9095 90 VLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQ 169 (203)
Q Consensus 90 ~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~k~~f~~~~~L~~~l~ 169 (203)
++++++.++|+|+. +| +|+| ++||++|++.+.++ + ++||||||||+|++|. +||+++++
T Consensus 155 ~~~~i~~~~~Kk~~---~s--~f~r------~~F~~~V~~~~~~~-------d-~~lIlaGPg~~k~~f~--~~l~~~~~ 213 (347)
T 2qi2_A 155 QVGTVYSGRSGKYA---EG--NYSE------ASYFDQIVNALKNY-------S-NSIIILGPGFARDRFA--RYCAQRGV 213 (347)
T ss_dssp EEEEEECCHHHHC---------CCH------HHHHHHHHHHHHTC-------C-SCEEEEESSSHHHHHH--HHHHHTSC
T ss_pred EEEEEeecCCCccc---cc--hhhH------HHHHHHHHHHHHhc-------C-CeEEEECCHHHHHHHH--HHHHHhhc
Confidence 99999999777664 34 3544 58999999998885 2 8999999999999997 68999887
Q ss_pred hceeEEEECCCCCcchHHHHHHHH--Hhhhccccc
Q psy9095 170 AKIIKLVDVSYGGENGFNQAIELA--AESLQNVLI 202 (203)
Q Consensus 170 ~k~i~~~~~s~~~~~gl~E~l~~~--~~~l~~~~~ 202 (203)
+++ .++|+||++++|++|+|+++ +++|++.++
T Consensus 214 ~~i-~~v~~s~~~~~gl~Evl~~~~v~~~L~~~k~ 247 (347)
T 2qi2_A 214 NVI-GSFPANRTDSGAVYEFITSADGAKLLSNERI 247 (347)
T ss_dssp CCS-CCEECSSSSHHHHHHHHHSHHHHHHHTTSHH
T ss_pred ceE-EEEecCCCccccHHHHHhChhHHHHHHHHHH
Confidence 655 69999999999999999999 999998765
No 11
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=43.24 E-value=54 Score=24.18 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=33.1
Q ss_pred ccEEEEecChh------hHHhhhccCCCCh-hhhhceeEEEECCCCCcchHHHHHHHHHhhhcc
Q psy9095 143 IAGLILAGSAD------FKTELSQSDMFDP-RLQAKIIKLVDVSYGGENGFNQAIELAAESLQN 199 (203)
Q Consensus 143 ~~~iIiaGpg~------~k~~f~~~~~L~~-~l~~k~i~~~~~s~~~~~gl~E~l~~~~~~l~~ 199 (203)
-++||++.|-. .-..|. |++.. .++.|.++++.+|++...+. .++..-+++|..
T Consensus 64 aD~ii~~tP~y~~~~p~~lk~~l--D~l~~~~~~gK~~~~~~~sgg~~g~~-~a~~~l~~~l~~ 124 (174)
T 3gfs_A 64 ADAIVLLSPEYHSGMSGALKNAL--DFLSSEQFKYKPVALLAVAGGGDGGI-NALNNMRTVMRG 124 (174)
T ss_dssp CSSEEEEEECSSSSCCHHHHHHH--HTCCHHHHTTCEEEEEEECCSTTCSH-HHHHHHHHHHHH
T ss_pred CCEEEEEcCCcCCCCCHHHHHHH--HHhCHhhhCCCcEEEEEECCCChhHH-HHHHHHHHHHHH
Confidence 47899998863 234444 46664 67788888888877654432 344444444443
No 12
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=38.50 E-value=23 Score=27.45 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=30.2
Q ss_pred ccEEEEecChh-------hHHhhhccCCC-----ChhhhhceeEEEECCCCCcchHH
Q psy9095 143 IAGLILAGSAD-------FKTELSQSDMF-----DPRLQAKIIKLVDVSYGGENGFN 187 (203)
Q Consensus 143 ~~~iIiaGpg~-------~k~~f~~~~~L-----~~~l~~k~i~~~~~s~~~~~gl~ 187 (203)
-+++|++.|-. +|+-+ |++ ...+..|.++++.+|.|...|.+
T Consensus 68 aD~~ii~tPeYn~s~pg~LKn~i---Dwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~~ 121 (190)
T 3u7r_A 68 SDAVLAITPEYNRSYPGMIKNAI---DWATRPYGQNSWKGKPAAVIGTSPGVIGAAL 121 (190)
T ss_dssp SSEEEEECCCBTTBCCHHHHHHH---HHHHCSTTCCTTTTCEEEEEEEESSTTTTHH
T ss_pred CCcEEEechhhcccCCHHHHHHH---HHhcccccCCccCCCEEEEEEeCCchhhHHH
Confidence 58999999864 45544 333 34677899999999888776653
No 13
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=36.86 E-value=1.7e+02 Score=24.43 Aligned_cols=73 Identities=11% Similarity=0.113 Sum_probs=36.2
Q ss_pred EEEEEC--CceEEEEEeCCeEEEEEEEEeeCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhh--CCCCCccE
Q psy9095 70 FIVMDG--NGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATTLFIT--NDKPNIAG 145 (203)
Q Consensus 70 vvvvd~--g~a~i~~~~g~~~~~~~~i~~~vp~Kh~~GG~S~~RfeR~re~~i~~~~~~vae~~~~~f~~--~~~~~~~~ 145 (203)
++-+|. ++..++++++..+ +...+.+... .+||.-+ +...++|-+.+...+.+++.. ....+++.
T Consensus 8 iLgIdts~~~~svAl~~~~~i--~~~~~~~~~~--~~gGv~p-------~~a~~~H~~~l~~~i~~~L~~ag~~~~did~ 76 (334)
T 3eno_A 8 VLGLEGTAHTISCGIIDESRI--LAMESSMYRP--KTGGIRP-------LDAAVHHSEVIDTVISRALEKAKISIHDIDL 76 (334)
T ss_dssp EEEEECSSSEEEEEEEESSCC--CEEEEEECCC--SSCSCCH-------HHHHHHHHHHHHHHHHHHHHHHTCCGGGCCE
T ss_pred EEEEECCCcCeEEEEEECCEE--EEEEEEeecc--ccCCcCc-------chHHHHHHHHHHHHHHHHHHHcCCCHHHCCE
Confidence 445552 4456666655432 2233333333 4467776 222334444444444443321 12356888
Q ss_pred EEEe-cChh
Q psy9095 146 LILA-GSAD 153 (203)
Q Consensus 146 iIia-Gpg~ 153 (203)
|.+. |||.
T Consensus 77 Iav~~gPG~ 85 (334)
T 3eno_A 77 IGFSMGPGL 85 (334)
T ss_dssp EEEECSSSC
T ss_pred EEEEcCCCC
Confidence 8765 8885
No 14
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=36.72 E-value=23 Score=24.96 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhhhhCCCCCccEEEEecChhh
Q psy9095 124 VRKVAEVATTLFITNDKPNIAGLILAGSADF 154 (203)
Q Consensus 124 ~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~ 154 (203)
=.++|+.+.+.+.. ...+..+-++||||.
T Consensus 58 P~~iA~~i~~~l~~--~~~i~~vevagpGFI 86 (109)
T 3gdz_A 58 PRQLAEQVLSHLDL--NGIANKVEIAGPGFI 86 (109)
T ss_dssp HHHHHHHHHHHCCC--TTTEEEEEEETTTEE
T ss_pred HHHHHHHHHHhcCc--CCcEeEEEEeCCCeE
Confidence 34677777765531 234789999999984
No 15
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=33.37 E-value=59 Score=25.04 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=27.6
Q ss_pred ccEEEEecChh-------hHHhhhccCCCCh----hhhhceeEEEECCCCCcchH
Q psy9095 143 IAGLILAGSAD-------FKTELSQSDMFDP----RLQAKIIKLVDVSYGGENGF 186 (203)
Q Consensus 143 ~~~iIiaGpg~-------~k~~f~~~~~L~~----~l~~k~i~~~~~s~~~~~gl 186 (203)
-++||++.|-. +|+-+ |++.. .++.|.+.++.+|.+...|.
T Consensus 74 AD~iVi~tP~Y~~s~p~~LK~~i---D~~~~~~~~~l~gK~v~~v~tsgg~~g~~ 125 (199)
T 4hs4_A 74 ADAVVIVTPEYNYSVPGVLKNAI---DWLSRVSPQPLAGKPVALVTASPGMIGGA 125 (199)
T ss_dssp SSEEEEEECCBTTBCCHHHHHHH---HHHTTSSSCTTTTCEEEEEEECSSSSCSH
T ss_pred CCEEEEEcCccCCCcCHHHHHHH---HHhcccCCcccCCCEEEEEEeCCCCcccH
Confidence 48899999874 34433 34443 67788888898886655443
No 16
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=30.79 E-value=2.3e+02 Score=23.41 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=11.2
Q ss_pred CCCccEEEE-ecChh
Q psy9095 140 KPNIAGLIL-AGSAD 153 (203)
Q Consensus 140 ~~~~~~iIi-aGpg~ 153 (203)
..+++.|.+ .|||.
T Consensus 66 ~~did~Ia~~~GPG~ 80 (330)
T 2ivn_A 66 LDDIDVIAFSQGPGL 80 (330)
T ss_dssp TTTCCEEEEEEESSC
T ss_pred HHHCcEEEEECCCCc
Confidence 467999987 69994
No 17
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=30.51 E-value=1.6e+02 Score=24.39 Aligned_cols=39 Identities=8% Similarity=-0.014 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhhh----hCCCCCccEEEEecChhhHHhhh
Q psy9095 121 HNYVRKVAEVATTLFI----TNDKPNIAGLILAGSADFKTELS 159 (203)
Q Consensus 121 ~~~~~~vae~~~~~f~----~~~~~~~~~iIiaGpg~~k~~f~ 159 (203)
+.+++++++.+.+.+. ......++.|++.|-+.....+.
T Consensus 281 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~ 323 (377)
T 2ych_A 281 RPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLA 323 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHH
Confidence 3444555554444332 12234689999998776555554
No 18
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=25.09 E-value=81 Score=24.03 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=25.7
Q ss_pred ccEEEEecChhh------HHhhhccCCCC----hhhhhceeEEEECCCCCcch
Q psy9095 143 IAGLILAGSADF------KTELSQSDMFD----PRLQAKIIKLVDVSYGGENG 185 (203)
Q Consensus 143 ~~~iIiaGpg~~------k~~f~~~~~L~----~~l~~k~i~~~~~s~~~~~g 185 (203)
-++||++.|-.. -..|. |++. ..++.|.+.++.+|.+...|
T Consensus 73 AD~iv~~sP~y~~~~~~~lK~~i--D~~~~~~~~~~~gK~~~~~~~s~g~~gg 123 (193)
T 3svl_A 73 ADGVVIVTPEYNYSVPGGLKNAI--DWLSRLPDQPLAGKPVLIQTSSMGVIGG 123 (193)
T ss_dssp SSEEEEEECCBTTBCCHHHHHHH--HHHHTSTTCTTTTCEEEEEEECSSTTTT
T ss_pred CCEEEEEecccCCCCCHHHHHHH--HHHhhcCccccCCCeEEEEEeCCCCcch
Confidence 489999999742 22333 2232 25677888888887664444
No 19
>1k2d_P MBP peptide, myelin basic protein peptide with 8 residue linke; MHC class II, I-AU, H-2U, autoimmune disease; HET: NDG NAG; 2.20A {Mus musculus}
Probab=24.87 E-value=17 Score=18.79 Aligned_cols=10 Identities=60% Similarity=1.026 Sum_probs=6.7
Q ss_pred CCCCCcchHH
Q psy9095 102 HGRGGQSALR 111 (203)
Q Consensus 102 h~~GG~S~~R 111 (203)
|+.||.||.|
T Consensus 1 hsrggasq~r 10 (26)
T 1k2d_P 1 HSRGGASQYR 10 (26)
T ss_pred CCcccccccC
Confidence 5667788753
No 20
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=21.37 E-value=96 Score=23.75 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=23.7
Q ss_pred ccEEEEecChhh------HHhhhccCCCC-hhhhhceeEEEECCCCC
Q psy9095 143 IAGLILAGSADF------KTELSQSDMFD-PRLQAKIIKLVDVSYGG 182 (203)
Q Consensus 143 ~~~iIiaGpg~~------k~~f~~~~~L~-~~l~~k~i~~~~~s~~~ 182 (203)
-++||++.|-.. -..|. |++. ..+..|.+.++.++.+.
T Consensus 86 AD~ivi~sP~Y~~~~~~~lK~~i--D~~~~~~l~gK~~~~v~t~G~~ 130 (191)
T 3k1y_A 86 SDGLVVATPVFKASYTGLFKMFF--DILDTDALTGMPTIIAATAGSA 130 (191)
T ss_dssp CSEEEEEEECBTTBSCHHHHHHH--HHSCTTTTTTCEEEEEEEESSS
T ss_pred CCEEEEEcCccCCcCcHHHHHHH--HHhhhhhcCCCEEEEEEeCCCc
Confidence 488999988642 33444 3454 35677887777765433
No 21
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=20.69 E-value=1.8e+02 Score=20.27 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhhhhCCCCCccEEEEecChhh
Q psy9095 119 KRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADF 154 (203)
Q Consensus 119 ~i~~~~~~vae~~~~~f~~~~~~~~~~iIiaGpg~~ 154 (203)
.+.+-+..+-++++++-... + + .-||++||.|.
T Consensus 14 dlirIl~~ieekinELk~dG-~-e-PDIiL~G~eay 46 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDG-F-N-PDIILFGREAY 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-C-C-CCEEEECHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcC-C-C-CCeEEEcHHHH
Confidence 34456677777777765432 2 2 33899999973
No 22
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=20.38 E-value=1.4e+02 Score=23.93 Aligned_cols=49 Identities=12% Similarity=0.005 Sum_probs=31.8
Q ss_pred ccEEEEec-ChhhHHhhhccCCCChhhhhceeEEEECCCCCcchHHHHHHHHH
Q psy9095 143 IAGLILAG-SADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAA 194 (203)
Q Consensus 143 ~~~iIiaG-pg~~k~~f~~~~~L~~~l~~k~i~~~~~s~~~~~gl~E~l~~~~ 194 (203)
...++++| ||.-|..+... +...+...+ ..++++..+...+++.+....
T Consensus 48 ~~~~L~~G~~G~GKT~la~~--la~~l~~~~-~~i~~~~~~~~~i~~~~~~~~ 97 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKA--LCHDVNADM-MFVNGSDCKIDFVRGPLTNFA 97 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHH--HHHHTTEEE-EEEETTTCCHHHHHTHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHHH--HHHHhCCCE-EEEcccccCHHHHHHHHHHHH
Confidence 46789999 99889888742 444443333 467777766666666665543
Done!