RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9095
         (203 letters)



>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide
           chain release factor subunit 1, ERF1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 134

 Score =  197 bits (503), Expect = 3e-66
 Identities = 114/133 (85%), Positives = 125/133 (93%)

Query: 65  DNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYV 124
           D+KFGFIV+DG+GALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYV
Sbjct: 1   DSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYV 60

Query: 125 RKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGEN 184
           RKVAE A  LFI+ DK N+AGL+LAGSADFKTELSQSDMFD RLQ+K++KLVD+SYGGEN
Sbjct: 61  RKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGEN 120

Query: 185 GFNQAIELAAESL 197
           GFNQAIEL+ E L
Sbjct: 121 GFNQAIELSTEVL 133


>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide
           chain release factor subunit 1, ERF1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 138

 Score =  104 bits (262), Expect = 1e-29
 Identities = 53/55 (96%), Positives = 55/55 (100%)

Query: 10  VPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLAD 64
           VPPNGLV+YCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALL+D
Sbjct: 84  VPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSD 138


>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae
           [TaxId: 4932]}
          Length = 142

 Score = 80.2 bits (198), Expect = 4e-20
 Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 19/142 (13%)

Query: 69  GFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVA 128
             +V+    A    +  ++  +  K    +PKK                EK   + + + 
Sbjct: 8   AAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRTTDVLK------FDEKTEKFYKAIY 61

Query: 129 EVATTLFITNDKPNIAGLILAGSADFKTELSQSDM-FDPRLQAKIIK-------LVDVSY 180
                     +   +  +IL     +   L      +      K I        +   S 
Sbjct: 62  SAMKKDL---NFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKKILDNKGMFFIAHCST 118

Query: 181 GGENGFNQAIE--LAAESLQNV 200
           G   G N+ ++  L A  LQ+ 
Sbjct: 119 GYLQGINEVLKNPLYASKLQDT 140


>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota
           {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 117

 Score = 68.3 bits (167), Expect = 7e-16
 Identities = 13/134 (9%), Positives = 35/134 (26%), Gaps = 24/134 (17%)

Query: 68  FGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKV 127
           +  + MD + A    +     + +         K+  G  S   +               
Sbjct: 7   YTAVAMDEDEAQIFLIHPYGIQQVGTVYSGRSGKYAEGNYSEASYFD------------- 53

Query: 128 AEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFN 187
            ++   L     K     +I+ G    +   ++   +  +    +I     +        
Sbjct: 54  -QIVNAL-----KNYSNSIIILGPGFARDRFAR---YCAQRGVNVIGSFPANRTDSGAVY 104

Query: 188 QAIELAAESLQNVL 201
           + I   +     +L
Sbjct: 105 EFIT--SADGAKLL 116


>d1pbua_ d.58.46.1 (A:) Elongation factor 1-gamma C-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 162

 Score = 25.8 bits (57), Expect = 2.5
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 116 RMEKRHNYVRKVAEVATTLFITNDKPNIAGLILAGSADFKTELSQSDMFD 165
           R++K    +RK A  +  LF TN+  +I+G+ +    +    LS     D
Sbjct: 73  RLDK----LRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVD 118


>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2
           {Crab-eating macaque (Macaca fascicularis) [TaxId:
           9541]}
          Length = 161

 Score = 25.9 bits (57), Expect = 2.6
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 13/76 (17%)

Query: 105 GGQSALRFARLRMEKRHNYVRKVAE-------------VATTLFITNDKPNIAGLILAGS 151
            G +A+     R++ RH     V E                  F+   KPN+A L + G 
Sbjct: 69  MGAAAMYLISKRLKSRHRLQDNVREDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGV 128

Query: 152 ADFKTELSQSDMFDPR 167
                 L   D     
Sbjct: 129 LRVMEGLDAFDDLMQH 144


>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc
           6803 [TaxId: 1148]}
          Length = 249

 Score = 25.8 bits (56), Expect = 4.3
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 76  NGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALR 111
           N  +   L+   +  + + T DL  +  R G +  R
Sbjct: 201 NREVMHDLEDLIKAAIGEHTFDLLTRQDRPGSTEAR 236


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.394 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 723,960
Number of extensions: 31946
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 9
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)