Query psy9097
Match_columns 152
No_of_seqs 153 out of 1204
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 18:48:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00135 COesterase: Carboxyle 99.9 4.4E-28 9.6E-33 207.0 5.2 104 20-147 19-122 (535)
2 KOG4389|consensus 99.9 5E-27 1.1E-31 198.6 10.8 100 23-142 30-129 (601)
3 COG2272 PnbA Carboxylesterase 99.9 3.5E-26 7.5E-31 194.1 7.7 87 24-142 2-88 (491)
4 cd00312 Esterase_lipase Estera 99.9 5.7E-25 1.2E-29 188.1 9.3 89 26-144 1-89 (493)
5 KOG1516|consensus 99.9 6.1E-23 1.3E-27 177.7 9.7 98 21-146 12-109 (545)
6 PF04596 Pox_F15: Poxvirus pro 44.1 19 0.00042 26.2 2.1 20 128-147 98-117 (136)
7 PHA02993 hypothetical protein; 35.3 31 0.00066 25.4 2.0 18 129-146 110-127 (147)
8 KOG3448|consensus 22.9 1E+02 0.0023 20.9 2.7 52 22-86 12-64 (96)
9 PF04272 Phospholamban: Phosph 19.4 1.3E+02 0.0029 17.8 2.4 14 4-17 36-49 (52)
10 COG4939 Major membrane immunog 18.6 2E+02 0.0042 21.0 3.6 52 1-55 1-52 (147)
No 1
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.94 E-value=4.4e-28 Score=206.97 Aligned_cols=104 Identities=42% Similarity=0.769 Sum_probs=69.8
Q ss_pred cCCCCcEEEcCceeeEEEEEecCCCCccceeeecccccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCC
Q psy9097 20 DYIAPRIVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKFAPVCPQDFAAGATG 99 (152)
Q Consensus 20 ~~~~~~~V~t~~G~v~G~~~~~~~~~~~~v~~F~GIPYA~~P~G~~RF~~P~~~~~w~g~~~at~~gp~CpQ~~~~~~~~ 99 (152)
...+.++|+|++|+|+|........ .+|++|+|||||+||+|++||++|+++.+|+++++|+++|+.|||......
T Consensus 19 ~~~~~~~v~~~~g~i~G~~~~~~~~--~~v~~f~gIpYA~pP~g~~Rf~~p~~~~~~~~~~~a~~~~~~C~Q~~~~~~-- 94 (535)
T PF00135_consen 19 AQASSPVVTTSYGKIRGIRVNTDDG--KGVYSFLGIPYAQPPVGELRFRPPQPPPPWSGVRDATKYGPACPQPPPPGP-- 94 (535)
T ss_dssp CCSTCCEEEETTEEEEEEEEEESTC--CEEEEEEEEESSE---GGGTTS--EB--S-SSEEETBS---BESCECTTSS--
T ss_pred ccCCCCEEEECCeEEEeEEEecCCC--cceEEEeCcccCCCCCCCcccccccccccchhhhhhhhccccccccccccc--
Confidence 4456789999999999987765421 479999999999999999999999999999999999999999999876310
Q ss_pred CccCCCcCCccccccchhhhhhhcCCCCCCCCCceEEEEEecCCCCCC
Q psy9097 100 GAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSPIRKGLF 147 (152)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sEDCL~LNI~~P~~~~~~ 147 (152)
. ........++||||+||||+|....+.
T Consensus 95 ------------~--------~~~~~~~~~sEDCL~LnI~~P~~~~~~ 122 (535)
T PF00135_consen 95 ------------S--------PGFNPPVGQSEDCLYLNIYTPSNASSN 122 (535)
T ss_dssp ------------H--------HHCSHSSHBES---EEEEEEETSSSST
T ss_pred ------------c--------cccccccCCCchHHHHhhhhccccccc
Confidence 0 000001236999999999999988754
No 2
>KOG4389|consensus
Probab=99.94 E-value=5e-27 Score=198.58 Aligned_cols=100 Identities=37% Similarity=0.623 Sum_probs=84.8
Q ss_pred CCcEEEcCceeeEEEEEecCCCCccceeeecccccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCcc
Q psy9097 23 APRIVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKFAPVCPQDFAAGATGGAV 102 (152)
Q Consensus 23 ~~~~V~t~~G~v~G~~~~~~~~~~~~v~~F~GIPYA~~P~G~~RF~~P~~~~~w~g~~~at~~gp~CpQ~~~~~~~~~~~ 102 (152)
+..+|+|+.|+|||......+ +.|.+|+|||||+||+|++||++|+|.++|.|+.|||++.+.|.|....
T Consensus 30 ~~~vv~t~~G~vRG~~~t~~g---~~V~aFlGIPfAePPvg~~RFkkP~p~~pW~g~ldAtt~a~~C~Q~~D~------- 99 (601)
T KOG4389|consen 30 DDLVVQTKLGTVRGTELTFPG---KPVSAFLGIPFAEPPVGDLRFKKPEPKQPWSGVLDATTLANTCYQTRDT------- 99 (601)
T ss_pred cceEEeccCCcccceEEecCC---ceEEEEecCccCCCCCccccCCCCCcCCCccceecccccchhhhccccc-------
Confidence 447999999999999988765 7899999999999999999999999999999999999999999998874
Q ss_pred CCCcCCccccccchhhhhhhcCCCCCCCCCceEEEEEecC
Q psy9097 103 GAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSPI 142 (152)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sEDCL~LNI~~P~ 142 (152)
..+.|.+. + +.....+-||||||||||+|.
T Consensus 100 ----yfp~F~Gs-----E-MWNpNt~lSEDCLYlNVW~P~ 129 (601)
T KOG4389|consen 100 ----YFPGFWGS-----E-MWNPNTELSEDCLYLNVWAPA 129 (601)
T ss_pred ----cCCCCCcc-----c-ccCCCCCcChhceEEEEeccC
Confidence 23333322 2 333456789999999999996
No 3
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.93 E-value=3.5e-26 Score=194.12 Aligned_cols=87 Identities=45% Similarity=0.856 Sum_probs=76.6
Q ss_pred CcEEEcCceeeEEEEEecCCCCccceeeecccccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCccC
Q psy9097 24 PRIVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKFAPVCPQDFAAGATGGAVG 103 (152)
Q Consensus 24 ~~~V~t~~G~v~G~~~~~~~~~~~~v~~F~GIPYA~~P~G~~RF~~P~~~~~w~g~~~at~~gp~CpQ~~~~~~~~~~~~ 103 (152)
.++++|.+|++.|+.. ++|++|+|||||+||+|++||++|+++++|.+++||+++||.|||.....
T Consensus 2 ~~~~~t~~G~~~g~~~-------~~v~~w~GIpYA~pPvG~~Rfr~p~~~~~w~~~rda~~~gp~~~Q~~~~~------- 67 (491)
T COG2272 2 APVAETTTGKVEGITV-------NGVHSWLGIPYAAPPVGELRFRRPVPPEPWSGVRDATQFGPACPQPFNRM------- 67 (491)
T ss_pred Cceeecccceeecccc-------cceeEEeecccCCCCCCcccccCCCCCcCCCcccchhccCCCCCCccccc-------
Confidence 5789999999999987 78999999999999999999999999999999999999999999995310
Q ss_pred CCcCCccccccchhhhhhhcCCCCCCCCCceEEEEEecC
Q psy9097 104 AAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSPI 142 (152)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~sEDCL~LNI~~P~ 142 (152)
........||||||||||+|.
T Consensus 68 ------------------~~~~~~~~sEDCL~LNIwaP~ 88 (491)
T COG2272 68 ------------------GSGEDFTGSEDCLYLNIWAPE 88 (491)
T ss_pred ------------------cccccCCccccceeEEeeccC
Confidence 001134789999999999999
No 4
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.92 E-value=5.7e-25 Score=188.07 Aligned_cols=89 Identities=45% Similarity=0.709 Sum_probs=74.7
Q ss_pred EEEcCceeeEEEEEecCCCCccceeeecccccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCccCCC
Q psy9097 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKFAPVCPQDFAAGATGGAVGAA 105 (152)
Q Consensus 26 ~V~t~~G~v~G~~~~~~~~~~~~v~~F~GIPYA~~P~G~~RF~~P~~~~~w~g~~~at~~gp~CpQ~~~~~~~~~~~~~~ 105 (152)
+|+|++|+|+|... .+|+.|+|||||+||+|++||++|+++++|+++++|+++|+.|||.......
T Consensus 1 ~v~t~~G~v~G~~~-------~~~~~F~GIPYA~pP~g~~Rf~~p~~~~~w~~~~~a~~~g~~c~Q~~~~~~~------- 66 (493)
T cd00312 1 LVVTPNGKVRGVDE-------GGVYSFLGIPYAEPPVGDLRFKEPQPYEPWSDVLDATSYPPSCMQWDQLGGG------- 66 (493)
T ss_pred CEEeCCceEEeEEe-------CCEEEEeccccCCCCCccccCCCCCCCCCCcCceeccccCCCCccCCccccc-------
Confidence 48999999999876 4799999999999999999999999999999999999999999998653100
Q ss_pred cCCccccccchhhhhhhcCCCCCCCCCceEEEEEecCCC
Q psy9097 106 AETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSPIRK 144 (152)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~sEDCL~LNI~~P~~~ 144 (152)
.......++||||+||||+|...
T Consensus 67 ----------------~~~~~~~~sEdcl~l~i~~p~~~ 89 (493)
T cd00312 67 ----------------LWNAKLPGSEDCLYLNVYTPKNT 89 (493)
T ss_pred ----------------cccCCCCCCCcCCeEEEEeCCCC
Confidence 00012357999999999999764
No 5
>KOG1516|consensus
Probab=99.88 E-value=6.1e-23 Score=177.75 Aligned_cols=98 Identities=41% Similarity=0.734 Sum_probs=84.4
Q ss_pred CCCCcEEEcCceeeEEEEEecCCCCccceeeecccccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCC
Q psy9097 21 YIAPRIVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKFAPVCPQDFAAGATGG 100 (152)
Q Consensus 21 ~~~~~~V~t~~G~v~G~~~~~~~~~~~~v~~F~GIPYA~~P~G~~RF~~P~~~~~w~g~~~at~~gp~CpQ~~~~~~~~~ 100 (152)
....++|.|.+|+++|........ ..+..|+|||||+||+|++||++|+|+++|+++++|+++++.|+|......
T Consensus 12 ~~~~~~~~t~~G~i~G~~~~~~~~--~~~~~F~gIpya~PP~G~lRF~~P~p~~~W~gv~~at~~~~~C~q~~~~~~--- 86 (545)
T KOG1516|consen 12 TPSPPVVGTPYGKIRGKTVSSTYD--VDVDRFLGIPYAKPPVGELRFRKPQPPEPWTGVLDATKYGPACPQNDELTG--- 86 (545)
T ss_pred ccCCceEecccceEeeeEeeccCC--ceeEEEcccccCCCCCccccCCCCCCCCCCccccccccCCCCCCCcccccc---
Confidence 566799999999999998876322 679999999999999999999999999999999999999999999976310
Q ss_pred ccCCCcCCccccccchhhhhhhcCCCCCCCCCceEEEEEecCCCCC
Q psy9097 101 AVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSPIRKGL 146 (152)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sEDCL~LNI~~P~~~~~ 146 (152)
.....++||||+||||+|....+
T Consensus 87 -----------------------~~~~~~sEDCLylNV~tp~~~~~ 109 (545)
T KOG1516|consen 87 -----------------------QNRVFGSEDCLYLNVYTPQGCSE 109 (545)
T ss_pred -----------------------ccCCCCcCCCceEEEeccCCCcc
Confidence 00246899999999999998875
No 6
>PF04596 Pox_F15: Poxvirus protein F15; InterPro: IPR007675 Protein F15 is found in a number of Poxviruses.
Probab=44.13 E-value=19 Score=26.15 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=16.4
Q ss_pred CCCCCceEEEEEecCCCCCC
Q psy9097 128 NQSEDCLYLNIYSPIRKGLF 147 (152)
Q Consensus 128 ~~sEDCL~LNI~~P~~~~~~ 147 (152)
..+||-|++||+.|....+.
T Consensus 98 ~~~~~~LninIFiPT~~~~~ 117 (136)
T PF04596_consen 98 KGNENSLNINIFIPTLNKSI 117 (136)
T ss_pred CCCCCceEEEEEeeccCccE
Confidence 45679999999999987753
No 7
>PHA02993 hypothetical protein; Provisional
Probab=35.35 E-value=31 Score=25.37 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.2
Q ss_pred CCCCceEEEEEecCCCCC
Q psy9097 129 QSEDCLYLNIYSPIRKGL 146 (152)
Q Consensus 129 ~sEDCL~LNI~~P~~~~~ 146 (152)
.++|-|++||++|....+
T Consensus 110 ~~~~~LniniFiPT~~~~ 127 (147)
T PHA02993 110 GDDDSLNINIFIPTINKS 127 (147)
T ss_pred CCCCceEEEEEEeccCcc
Confidence 356899999999998775
No 8
>KOG3448|consensus
Probab=22.94 E-value=1e+02 Score=20.88 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=32.0
Q ss_pred CCCcEEEcCce-eeEEEEEecCCCCccceeeecccccCCCCCCCCCCCCCCCCCCCCCcccccccC
Q psy9097 22 IAPRIVRTKYG-DVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKFA 86 (152)
Q Consensus 22 ~~~~~V~t~~G-~v~G~~~~~~~~~~~~v~~F~GIPYA~~P~G~~RF~~P~~~~~w~g~~~at~~g 86 (152)
....+|.++++ .|+|.. ..|++|+++.--.. |-..|...+.-..+.++--.|
T Consensus 12 g~~V~VeLKnd~~i~GtL--------~svDqyLNlkL~di-----~v~d~~kyPhm~Sv~ncfIRG 64 (96)
T KOG3448|consen 12 GKEVVVELKNDLSICGTL--------HSVDQYLNLKLTDI-----SVTDPDKYPHMLSVKNCFIRG 64 (96)
T ss_pred CCeEEEEEcCCcEEEEEe--------cccchhheeEEeee-----EeeCcccCCCeeeeeeEEEec
Confidence 44578888887 677765 57899999877654 555554333333344443333
No 9
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=19.39 E-value=1.3e+02 Score=17.80 Aligned_cols=14 Identities=50% Similarity=0.479 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHh
Q psy9097 4 RLINQYQLLIYIIL 17 (152)
Q Consensus 4 ~~~~~~~~l~~~~~ 17 (152)
++|+..++|++++.
T Consensus 36 clilicllli~iiv 49 (52)
T PF04272_consen 36 CLILICLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445555544
No 10
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=18.60 E-value=2e+02 Score=21.04 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=0.0
Q ss_pred ChhhhHHHHHHHHHHHhhhcCCCCcEEEcCceeeEEEEEecCCCCccceeeeccc
Q psy9097 1 MRIRLINQYQLLIYIILYLDYIAPRIVRTKYGDVSGVIINADNRYLDAVEVFRGI 55 (152)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~~~~~~~V~t~~G~v~G~~~~~~~~~~~~v~~F~GI 55 (152)
|....+...++++.|+...+..+..-.+.+.|.++|.....+. ++-..|.-|
T Consensus 1 mvk~g~~~~~~~~~LL~aCg~sd~s~~t~~dGtY~~~y~~fDd---~gwk~f~~i 52 (147)
T COG4939 1 MVKYGLVGMIVALSLLTACGKSDFSKMTFNDGTYQGHYESFDD---HGWKAFVTI 52 (147)
T ss_pred CceehhhHHHHHHHHHHHhcccccccccccCCceeeeeccccc---cCccceEEE
Done!