RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9097
(152 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 108 bits (273), Expect = 1e-28
Identities = 43/116 (37%), Positives = 51/116 (43%), Gaps = 26/116 (22%)
Query: 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKF 85
+V T YG V G+ + D V F GIPYA PVG LRF P PE W V A K+
Sbjct: 2 VVETSYGKVRGLRVTVDG---GPVYAFLGIPYAKPPVGELRFKKPQPPEPWTGVLDATKY 58
Query: 86 APVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
P CPQ+ +M M SEDCLYLN+Y+P
Sbjct: 59 GPACPQN---------------NDLGSEMWNKNTGM--------SEDCLYLNVYTP 91
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 89.7 bits (223), Expect = 1e-21
Identities = 42/116 (36%), Positives = 48/116 (41%), Gaps = 30/116 (25%)
Query: 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKF 85
+V T G V GV V F GIPYA PVG+LRF P E W DV A +
Sbjct: 1 LVVTPNGKVRGVDE-------GGVYSFLGIPYAEPPVGDLRFKEPQPYEPWSDVLDATSY 53
Query: 86 APVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
P C Q G A+ PG SEDCLYLN+Y+P
Sbjct: 54 PPSCMQW----DQLGGGLWNAKLPG-------------------SEDCLYLNVYTP 86
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 86.7 bits (215), Expect = 1e-20
Identities = 41/116 (35%), Positives = 50/116 (43%), Gaps = 32/116 (27%)
Query: 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKF 85
+ T G V G+ +N V + GIPYA+ PVG LRF P PE W V+ A +F
Sbjct: 4 VAETTTGKVEGITVNG-------VHSWLGIPYAAPPVGELRFRRPVPPEPWSGVRDATQF 56
Query: 86 APVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
P CP QP M G SEDCLYLNI++P
Sbjct: 57 GPACP-------------------------QPFNRMGSGEDFTGSEDCLYLNIWAP 87
>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP). This entry
represents proteins encoded by genes which are always
found in type III secretion operons, although their
function in the processes of secretion and virulence is
unclear. Hpa stands for Hrp-associated gene, where Hrp
stands for hypersensitivity response and virulence. see
also PMID:18584024.
Length = 185
Score = 33.6 bits (77), Expect = 0.021
Identities = 21/85 (24%), Positives = 25/85 (29%), Gaps = 18/85 (21%)
Query: 53 RGIPYASAPVGNLRFMPPTTPETWKDVKPAHKFAPVCPQDFAA----------------- 95
R YA R PP TP + AH P P+D A
Sbjct: 12 RSFDYARLMRRAARAGPPGTPAPPGPAEDAHPEFPERPRDAPAPPAPPRATDGDRDPQPL 71
Query: 96 -GATGGAVGAAAETPGAEKMRQPRL 119
A A+ AA A R R+
Sbjct: 72 ADALAEAMARAAAARFAAGQRMVRV 96
>gnl|CDD|185536 PTZ00275, PTZ00275, biotin-acetyl-CoA-carboxylase ligase;
Provisional.
Length = 285
Score = 28.6 bits (64), Expect = 1.2
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 18 YLDYIAPRIVRTKYGDVSGVIINADNRYLD 47
+LDYI PR++ Y D V+I+ DN +
Sbjct: 225 FLDYITPRLL---YKD-KKVLIDQDNELIV 250
>gnl|CDD|234723 PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase;
Reviewed.
Length = 264
Score = 27.3 bits (62), Expect = 3.3
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 24 PRIVRTKYGDVSGVIINADNRYLDAVE 50
P+ V+ +Y D++G I A Y+ V+
Sbjct: 227 PKFVK-RYADLAGSIREAVKAYVAEVK 252
>gnl|CDD|119342 cd06557, KPHMT-like, Ketopantoate hydroxymethyltransferase (KPHMT)
is the first enzyme in the pantothenate biosynthesis
pathway. Ketopantoate hydroxymethyltransferase (KPHMT)
catalyzes the first committed step in the biosynthesis
of pantothenate (vitamin B5), which is a precursor to
coenzyme A and is required for penicillin biosynthesis.
Length = 254
Score = 27.0 bits (61), Expect = 4.1
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 24 PRIVRTKYGDVSGVIINADNRYLDAVE 50
P+ V+ +Y D+ +I A Y++ V+
Sbjct: 224 PKFVK-RYADLGELIREAVKAYVEEVK 249
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 27.2 bits (60), Expect = 4.7
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 2 RIRLINQYQLLIYIILYL-----DYIAPRIVRTKYGDVSGVIINADNRYLDAV 49
+ RL Q +Y +L L + R+V T+ + + + YLD +
Sbjct: 189 QYRLYQQELEEVYNVLRLEGQIQQSLRDRVVETQKLNSTIQLDQQHTAYLDLL 241
>gnl|CDD|224373 COG1456, CdhE, CO dehydrogenase/acetyl-CoA synthase gamma subunit
(corrinoid Fe-S protein) [Energy production and
conversion].
Length = 467
Score = 26.3 bits (58), Expect = 8.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 43 NRYLDAVEVFRGI-PYASAPVGNLRFMPPTTPETWKDVKP 81
NRY D + + + P+A PV LR T P T + V+P
Sbjct: 304 NRYADIL-ILHSLEPWALMPVLTLRQCIYTDPRTPQAVEP 342
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.429
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,163,266
Number of extensions: 748574
Number of successful extensions: 693
Number of sequences better than 10.0: 1
Number of HSP's gapped: 688
Number of HSP's successfully gapped: 19
Length of query: 152
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 64
Effective length of database: 7,034,450
Effective search space: 450204800
Effective search space used: 450204800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)